Citrus Sinensis ID: 004685

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------
Protein Sequence
MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSL
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccccccccccccEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEcccccEEEEEccccccccEEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccEEcccccccEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEcccccEEEEccccccEEEEEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccEEEEEcccccccccccccEEEEEEEcccccEEEEEEcccEEEEEEccccccccEEEEccccccEEEEccccccccccccccccccccccccccEEccccccHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccEEEcccccccccEEEEEcccccEEEEEEEccccccccccccccEEEccccccccccEEcccccccccEEEEEEEcccccEEEEccccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEcccccEEEEcccccEEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccccccEEcccccccccEEEEEEccccccEEEEEccccEEEEEEccccccccccccccccccccEEEccccEEEccccccEEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEEEcccccEEEccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEcccccEEEEEEccccccccccccEEEcccccEEEEccccccEEEEEEcccccEEEccccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEcccccEEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEccccccEEEEcccccccEEEEEEEcccccccEccccccccc
Coil and Loop (DISEMBL)
menfpfhdgsiydmldtrhtdtrpdvnhsLQMHSSLVRRLSQereleghqgcvnaiswnskgsllisgsddthinvWSYSSRKLLHSIetghsanvfctkfvpetsdelvvsgagdaEVRLFNlsrfsgrglddnaitpsalyqcHTRRVKKLAVEvgnphvvwsasedgtlrqhdfrqgsscppagsshqECRNILLDLrcgakrsladppkqtlslkscdisstrphlllvggsdafarlydrrmlppltscqkrmspppcvnyfcpmhlsehgrsslhlthvtfspngEEVLLSYSGEHVYLMDVnhaggramrytvgdaskimsftptlnglelqppihdflQTNIRVRGEVATGLGKCRMLVEIARNsleegkhpyygieaCNEVLEghlsgigpmlRHECLCIRAALLLKRKWKNDAQMAIRDCynarridsssfRAHLYMSEALEQLCKYKEALDFAIAAqcldpsnsvmAEKVENIKKHIAAAEteknnkandggarseprtgrvlsLSDIIYrseansdasqdgprseredsdydeevevdfhtsvpgdegrdveanflhgslnvrihrrgdsaretvdangssgspssssqndripyqpetVIDMKQRYVGhcnvgtdikqasflgqrgdyiasgsddgrwfIWEKQTGRLIKMLLgdeavvncvqchpfdcvvatsgidntikiwtpsasvpsivsggaagpdTADVLEAMESNQRKLsrnrehsl
Flexible Loop (DISEMBL)
menfpfhdgsiydMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSrfsgrglddnaitpsalyqCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRsladppkqtlslkscdisstrphLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAaaeteknnkandggarseprtgrVLSLSDIIYrseansdasqdgprseredsdydeevEVDFHtsvpgdegrdvEANFLHGSLNVRIHRRGDSAREtvdangssgspssssqndriPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIasgsddgrwFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMEsnqrklsrnrehsl
Low Complexity Region (SEG)
MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIaaaeteknnkanDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPrseredsdydeevevdFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANgssgspssssQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSL
Disordered region (IsUnstruct)
************************************************HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA**************************CRNILLDLRCGA****************CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP**********************************************************************************************FLH*****************************************TVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASV***********************************
Disordered Region (DISOPRED)
MENFPFHDGSIYDMLDTRHTD****VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA*****GDASKIMSFTPTL*****************RVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANS*****G**SEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDAN***********NDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS************************************
Disordered Region (DISEMBL)
MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD**************QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEK**************TGRVLSLSDIIYRSE*********************EVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRG************************IPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMES*************
Disordered Region (DISPRO)
*ENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMES*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKxxxxxxxxxxxxxxxxxxxxxGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	737	2.2.26 [Sep-21-2011]
Q8N5D0	677	WD and tetratricopeptide	yes	no	0.571	0.621	0.305	1e-45
Q80ZK9	677	WD and tetratricopeptide	yes	no	0.504	0.549	0.295	1e-43
Q9DC22	876	DDB1- and CUL4-associated	no	no	0.390	0.328	0.313	4e-34
Q58WW2	860	DDB1- and CUL4-associated	no	no	0.390	0.334	0.310	9e-34
Q5R9B8	860	DDB1- and CUL4-associated	no	no	0.390	0.334	0.310	1e-33
O94527	809	WD repeat protein iqw1 OS	yes	no	0.458	0.417	0.288	2e-33
Q5R448	597	DDB1- and CUL4-associated	no	no	0.354	0.437	0.288	4e-28
Q5TAQ9	597	DDB1- and CUL4-associated	no	no	0.354	0.437	0.285	3e-27
Q5U2M6	591	DDB1- and CUL4-associated	no	no	0.317	0.395	0.296	4e-27
Q8N7N5	591	DDB1- and CUL4-associated	no	no	0.354	0.441	0.282	1e-26

>sp|Q8N5D0|WDTC1_HUMAN WD and tetratricopeptide repeats protein 1 OS=Homo sapiens GN=WDTC1 PE=1 SV=2

 Score =  185 bits (469), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 152/497 (30%), Positives = 221/497 (44%), Gaps = 76/497 (15%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN
Sbjct: 33  FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P   D ++++GA D++V + +L+                ++  HT RVK++A 
Sbjct: 93  IFSVKFLPHAGDRILITGAADSKVHVHDLT----------VKETIHMFGDHTNRVKRIAT 142

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAKRSLADPPK 213
               P+  WSA+EDG +RQ+D R+        S H E   +L+DL   CG          
Sbjct: 143 APMWPNTFWSAAEDGLIRQYDLRE-------NSKHSE---VLIDLTEYCG---------- 182

Query: 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC----- 268
           Q +  K   ++    + L VG S  F RLYD RM+       K+ SP   V+ FC     
Sbjct: 183 QLVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIHNHRKSMKQ-SPSAGVHTFCDRQKP 241

Query: 269 --------------PMHLSEHGR--SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312
                         P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +  
Sbjct: 242 LPDGAAQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY-- 299

Query: 313 GRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRG---EVATGLGKCRMLVEI 369
            +   YT     K  S     NG      + + +   + +      +    G     VE+
Sbjct: 300 -KQRPYTFLLPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVEL 358

Query: 370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR--HECLCI--RAALLLKRKWKNDAQM 425
               LE  K       AC +  +        + R  H  +    RAA  +KRKW  D   
Sbjct: 359 P-PYLERVKQQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYD 417

Query: 426 AIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN-- 483
           A+RDC  A  ++    +AH  ++  L +L    EAL      +CLD       E+  +  
Sbjct: 418 ALRDCLKAISLNPCHLKAHFRLARCLFELKYVAEAL------ECLDDFKGKFPEQAHSSA 471

Query: 484 ---IKKHIAAAETEKNN 497
              + + I AA   KN+
Sbjct: 472 CDALGRDITAALFSKND 488

Homo sapiens (taxid: 9606)

>sp|Q80ZK9|WDTC1_MOUSE WD and tetratricopeptide repeats protein 1 OS=Mus musculus GN=Wdtc1 PE=1 SV=1

 Score =  178 bits (452), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 144/488 (29%), Positives = 212/488 (43%), Gaps = 116/488 (23%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN
Sbjct: 33  FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P   D ++++GA D++V + +L+                ++  HT RVK++A 
Sbjct: 93  IFSVKFLPHAGDRILITGAADSKVHVHDLT----------VKETIHMFGDHTNRVKRIAT 142

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAKRSLADPPK 213
               P+  WSA+EDG +RQ+D R+        S H E   +L+DL   CG          
Sbjct: 143 APMWPNTFWSAAEDGLIRQYDLRE-------NSKHSE---VLIDLTEYCGP--------- 183

Query: 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC----- 268
             +  K   ++    + L VG S  F RLYD RM+        R SP   V+ FC     
Sbjct: 184 -MVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIHNHRKSM-RQSPSAGVHTFCDRQKP 241

Query: 269 --------------PMHLSEHGR--SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312
                         P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +  
Sbjct: 242 LPDGAAQYYVAGHLPVKLPDYNSRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY-- 299

Query: 313 GRAMRYTV-------------GDASKIMSFTPTLNGLEL----------------QPPIH 343
            +   YT              G  S         NGL L                Q  + 
Sbjct: 300 -KQRPYTFLLPRKCHSVEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESKGCISPQVELP 358

Query: 344 DFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR 403
            +L+  ++ +   A    +    +++   ++++  H        N +L G+         
Sbjct: 359 PYLE-RVKQQANEAFACQQWTQAIQLYSQAVQKAPH--------NAMLYGN--------- 400

Query: 404 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDF 463
                 RAA  +KRKW  D   A+RDC  A  ++    +AH  ++  L +L    EAL  
Sbjct: 401 ------RAAAYMKRKWDGDHYDALRDCLKAISLNPCHLKAHFRLARCLFELKYVAEAL-- 452

Query: 464 AIAAQCLD 471
               +CLD
Sbjct: 453 ----ECLD 456

Mus musculus (taxid: 10090)

>sp|Q9DC22|DCAF6_MOUSE DDB1- and CUL4-associated factor 6 OS=Mus musculus GN=Dcaf6 PE=1 SV=1

 Score =  147 bits (370), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 153/322 (47%), Gaps = 34/322 (10%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            ++RL  E  L  H GCVN I WN  G  ++SGSDDT + + +  SRK+L +I +GH AN
Sbjct: 37  FIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRAN 96

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P T D+ +VS +GD  +   N+ +       D        + CH     ++  
Sbjct: 97  IFSAKFLPCTDDKQIVSCSGDGVIFYTNIEQ-------DAETNRQCQFTCHYGTTYEIMT 149

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQ 214
              +P+   S  EDGT+R  D R  +SC     + ++C+ +IL++ R  A      PP  
Sbjct: 150 VPNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPV- 203

Query: 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLS 273
                        P+ L VG SD+  R+YDRRML    T           V  F P HLS
Sbjct: 204 -------------PYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLS 250

Query: 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333
                S  +T + +S +G+E+L+SYS +++YL D      R ++    +  +     P +
Sbjct: 251 NK---SCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPV 307

Query: 334 NGLELQPPIHDFLQTNIRVRGE 355
             L L+    D+  T  R R E
Sbjct: 308 KRLRLR---GDWSDTGPRARPE 326

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q58WW2|DCAF6_HUMAN DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1

 Score =  145 bits (367), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 154/322 (47%), Gaps = 34/322 (10%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            ++RL  E  L  H GCVN I WN  G  ++SGSDDT + + +  SRK+L +I +GH AN
Sbjct: 37  FIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRAN 96

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P T+D+ +VS +GD  +   N+ +       D        + CH     ++  
Sbjct: 97  IFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQ-------DAETNRQCQFTCHYGTTYEIMT 149

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQ 214
              +P+   S  EDGT+R  D R  +SC     + ++C+ +IL++ R  A      PP  
Sbjct: 150 VPNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPI- 203

Query: 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLS 273
                        P+ L VG SD+  R+YDRRML    T           V  F P HL+
Sbjct: 204 -------------PYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLN 250

Query: 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333
                S  +T + +S +G+E+L+SYS +++YL D      R ++    +  +     P +
Sbjct: 251 ---NKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPV 307

Query: 334 NGLELQPPIHDFLQTNIRVRGE 355
             L L+    D+  T  R R E
Sbjct: 308 KRLRLR---GDWSDTGPRARPE 326

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5R9B8|DCAF6_PONAB DDB1- and CUL4-associated factor 6 OS=Pongo abelii GN=DCAF6 PE=2 SV=2

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 154/322 (47%), Gaps = 34/322 (10%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            ++RL  E  L  H GCVN I WN  G  ++SGSDDT + + +  SRK+L +I +GH AN
Sbjct: 37  FIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRAN 96

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P T+D+ +VS +GD  +   N+ +       D        + CH     ++  
Sbjct: 97  IFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQ-------DAETNRQCQFTCHYGTTYEIMT 149

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQ 214
              +P+   S  EDGT+R  D R  +SC     + ++C+ +IL++ R  A      PP  
Sbjct: 150 VPNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPI- 203

Query: 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLS 273
                        P+ L VG SD+  R+YDRRML    T           V  F P HL+
Sbjct: 204 -------------PYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLN 250

Query: 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333
                S  +T + +S +G+E+L+SYS +++YL D      R ++    +  +     P +
Sbjct: 251 ---NKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPV 307

Query: 334 NGLELQPPIHDFLQTNIRVRGE 355
             L L+    D+  T  R R E
Sbjct: 308 KRLRLR---GDWSDTGPRARPE 326

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|O94527|IQW1_SCHPO WD repeat protein iqw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iqw1 PE=1 SV=1

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 182/388 (46%), Gaps = 50/388 (12%)

Query: 15  LDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHI 74
           LD R    R  ++  +  +S+ +  +  ++EL GH GCVN + W++ G  L+SGSDDT +
Sbjct: 11  LDYRDWFQR-KISRDIYGNSTWLTGIDLQKELTGHTGCVNTLDWSADGEFLLSGSDDTRL 69

Query: 75  NVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133
            VW  ++  K  H I TGH  N+F  KFVP +++  ++S +GD  ++LF+L      G+D
Sbjct: 70  IVWDVFNEYKPRHLISTGHVQNIFSAKFVPYSNNRQILSASGDKLIKLFDLDSSKEGGMD 129

Query: 134 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193
               T +  + C    VK + V   N H     SEDGT RQ+D R+   C    +   +C
Sbjct: 130 HGMETQTRCWSCALDSVKNI-VPCDNGHTFLVCSEDGTARQYDIREPHVC----NQDLDC 184

Query: 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253
            +IL++          +P +  ++L +  +S + P+   +GG+  +A LYDRRM+     
Sbjct: 185 PSILVNY---------NPYR--INLYTITMSPSNPYYFAIGGTHPYAFLYDRRMVKKSFR 233

Query: 254 CQKRMSPPP-----CVNYFCP-MHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLM 306
               M+  P     CV  F P    +  G    ++T   FS  N  E+L+S++ ++VYL 
Sbjct: 234 DDWTMNTSPEKDCRCVRKFSPDGSCNSQGILDRYITCCQFSAANPNELLVSWNSDYVYLF 293

Query: 307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLE---LQPPIHDFLQTNIRVRGEVA----TG 359
            V+                  S+TPT N +E    +P     LQT    R   +      
Sbjct: 294 HVHEDK---------------SYTPTFNKIEDSNKKPSKPSLLQTQPLKRKNYSPWYKNN 338

Query: 360 LGKCRMLVEIARN---SLEEGKHPYYGI 384
            G       ++RN   + +  KH +Y +
Sbjct: 339 FGASTPASRVSRNPYTAAQPRKHTFYQM 366

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5R448|DCAF8_PONAB DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1

 Score =  127 bits (318), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 143/322 (44%), Gaps = 61/322 (18%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 179 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 238

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 151
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 239 VFQAKFLPNSGDSTLAMRARDGQVRVAELS----------------ATQCCKNTKRVAQH 282

Query: 152 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 283 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 322

Query: 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266
            +    ++ + L +  ++    H   VGG D F R+YD+R +               +  
Sbjct: 323 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI-------DENENNGVLKK 375

Query: 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG--RAMRYTVGDAS 324
           FCP HL  +G S  ++T + +S +G E+L SY+ E +YL + +H+ G     RY      
Sbjct: 376 FCPHHLV-NGESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRY------ 428

Query: 325 KIMSFTPTLNGLELQPPIHDFL 346
           K      T+ G+    P  +F+
Sbjct: 429 KGHRNNATVKGVNFYGPKSEFV 450

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q5TAQ9|DCAF8_HUMAN DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1

 Score =  124 bits (310), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 142/322 (44%), Gaps = 61/322 (18%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 179 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 238

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 151
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 239 VFQAKFLPNSGDSTLAMCARDGQVRVAELS----------------ATQCCKNTKRVAQH 282

Query: 152 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 283 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 322

Query: 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266
            +    ++ + L +  ++    H   VGG D F R+YD+R +               +  
Sbjct: 323 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI-------DENENNGVLKK 375

Query: 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG--RAMRYTVGDAS 324
           FCP HL  +  S  ++T + +S +G E+L SY+ E +YL + +H+ G     RY      
Sbjct: 376 FCPHHLV-NSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRY------ 428

Query: 325 KIMSFTPTLNGLELQPPIHDFL 346
           K      T+ G+    P  +F+
Sbjct: 429 KGHRNNATVKGVNFYGPKSEFV 450

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5U2M6|DCAF8_RAT DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=2 SV=1

 Score =  124 bits (310), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 131/287 (45%), Gaps = 53/287 (18%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 173 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 232

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 151
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 233 VFQAKFLPNSGDSTLAMCARDGQVRVAELS----------------ATQCCKNTKRVAQH 276

Query: 152 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 277 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 316

Query: 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266
            +    ++ + L +  ++    H   VGG D F R+YD+R +               +  
Sbjct: 317 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI-------DENENNGVLKK 369

Query: 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313
           FCP HL  +  S  ++T + +S +G E+L SY+ E +YL + +H+ G
Sbjct: 370 FCPHHLV-NSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 415

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q8N7N5|DCAF8_MOUSE DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1

 Score =  122 bits (306), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 142/322 (44%), Gaps = 61/322 (18%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 173 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 232

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 151
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 233 VFQAKFLPNSGDSTLAMCARDGQVRVAELS----------------ATQCCKNTKRVAQH 276

Query: 152 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 277 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 316

Query: 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266
            +    ++ + L +  ++    H   VGG D + R+YD+R +               +  
Sbjct: 317 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQYVRIYDQRKI-------DENENNGVLKK 369

Query: 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM--RYTVGDAS 324
           FCP HL  +  S  ++T + +S +G E+L SY+ E +YL + +H+ G     RY      
Sbjct: 370 FCPHHLV-NSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRY------ 422

Query: 325 KIMSFTPTLNGLELQPPIHDFL 346
           K      T+ G+    P  +F+
Sbjct: 423 KGHRNNATVKGVNFYGPKSEFV 444

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	737
255545904	761	WD and tetratricopeptide repeat protein,	0.993	0.961	0.782	0.0
224081993	756	predicted protein [Populus trichocarpa]	0.990	0.965	0.795	0.0
302142032	762	unnamed protein product [Vitis vinifera]	0.998	0.965	0.765	0.0
449436964	759	PREDICTED: WD and tetratricopeptide repe	0.994	0.965	0.729	0.0
297811205	755	hypothetical protein ARALYDRAFT_487925 [	0.985	0.961	0.720	0.0
334187604	754	WD and tetratricopeptide repeats protein	0.985	0.962	0.721	0.0
356515704	762	PREDICTED: WD and tetratricopeptide repe	0.990	0.958	0.723	0.0
18416416	757	WD and tetratricopeptide repeats protein	0.986	0.960	0.717	0.0
357465333	758	DDB1- and CUL4-associated factor [Medica	0.987	0.960	0.717	0.0
356508017	762	PREDICTED: WD and tetratricopeptide repe	0.990	0.958	0.720	0.0

>gi|255545904|ref|XP_002514012.1| WD and tetratricopeptide repeat protein, putative [Ricinus communis] gi|223547098|gb|EEF48595.1| WD and tetratricopeptide repeat protein, putative [Ricinus communis]

 Score = 1213 bits (3138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/734 (78%), Positives = 649/734 (88%), Gaps = 2/734 (0%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M+   FHDG+IY+ L+TR+ D+R D+NHSLQMHSSL+RRLSQERELEGHQGCVN+I+WNS
Sbjct: 1   MDTCGFHDGNIYNFLETRYFDSRRDINHSLQMHSSLIRRLSQERELEGHQGCVNSIAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
            GSLL+SGSDDT +N+WSYS RKLLHSI+TGHSAN+FCTKF+PETSDELVVSGAGDAEVR
Sbjct: 61  TGSLLVSGSDDTRMNIWSYSGRKLLHSIDTGHSANIFCTKFIPETSDELVVSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFNLSR SGRG DDNAI P ALYQCHT+RVKKLAVEVGNP+VVWSASEDGTLRQHD R+ 
Sbjct: 121 LFNLSRLSGRGPDDNAIAPLALYQCHTKRVKKLAVEVGNPNVVWSASEDGTLRQHDLRED 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           SSCPPAGSS QECRN+LLDLRCGAKRSL DPPKQTL+LKSCDIS+ RPHLLLVGGSDAFA
Sbjct: 181 SSCPPAGSSPQECRNVLLDLRCGAKRSLVDPPKQTLALKSCDISARRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPLTSC+KRM PPPCVNY CPMHLSE GRS LHLTHVTFSP+G+EVLLSYSG
Sbjct: 241 RLYDRRMLPPLTSCRKRMPPPPCVNYICPMHLSERGRSGLHLTHVTFSPSGDEVLLSYSG 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VNHAGG +M+YT GDASK+M+F P LNGLELQPP  D  +  +R +  VA+ L
Sbjct: 301 EHVYLMNVNHAGGSSMQYTTGDASKLMTFAPILNGLELQPPPSDISKNGLRFKSYVASTL 360

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KCR L++ A   L++G + +YGIEACNEVL+ H   I P +RH+CLC RAALLLKRKWK
Sbjct: 361 QKCRKLLQFAEKCLDDGANFFYGIEACNEVLDRHGRDISPAIRHDCLCTRAALLLKRKWK 420

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           ND  MAIRDCYNARRIDSSSFRA  YMSEAL QL KYKEALDFA+A+QC+ PS++ +AE 
Sbjct: 421 NDVHMAIRDCYNARRIDSSSFRALYYMSEALSQLGKYKEALDFAVASQCVAPSDTEIAEW 480

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VENIK ++A AE EK NKANDG  +SE R+GR LSLSDI+YRSEA SD SQDGP +ERE+
Sbjct: 481 VENIKNNLAQAEAEKTNKANDGALKSESRSGRALSLSDILYRSEATSDGSQDGP-TEREE 539

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS 600
           SDYDEE+E+DF TS+ GDEGRD+E N LHGSLN+RIHRRGDS+RET   NGS GSP SSS
Sbjct: 540 SDYDEELELDFETSISGDEGRDIEPNTLHGSLNLRIHRRGDSSRETSCTNGSCGSP-SSS 598

Query: 601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 660
            NDR+PYQPETVIDMKQR+VGHCNVGTDIKQASFLG+RG+Y+ASGSDDGRWFIWEKQTGR
Sbjct: 599 HNDRMPYQPETVIDMKQRFVGHCNVGTDIKQASFLGERGEYVASGSDDGRWFIWEKQTGR 658

Query: 661 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLE 720
           LIKMLLGDEAV+NCVQ HPFDCVVATSGIDNTIKIWTP+ASVPS V+GG+AGP+T+DVL+
Sbjct: 659 LIKMLLGDEAVLNCVQSHPFDCVVATSGIDNTIKIWTPTASVPSNVAGGSAGPETSDVLD 718

Query: 721 AMESNQRKLSRNRE 734
            MESNQR+LS NRE
Sbjct: 719 VMESNQRRLSHNRE 732

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081993|ref|XP_002306549.1| predicted protein [Populus trichocarpa] gi|222855998|gb|EEE93545.1| predicted protein [Populus trichocarpa]

 Score = 1211 bits (3134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/737 (79%), Positives = 654/737 (88%), Gaps = 7/737 (0%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M+N+ FHDG+I +ML++RH   RPDVNHSLQMHSSL+RRLSQERELEGHQGCVN+I+WNS
Sbjct: 1   MDNYGFHDGNICNMLESRH---RPDVNHSLQMHSSLIRRLSQERELEGHQGCVNSIAWNS 57

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           KGSLLISGSDDT +N+W+Y+ RKLLHSI+TGHSAN+FCTKFVPETSDELVV+GAGDAEVR
Sbjct: 58  KGSLLISGSDDTRMNIWNYAGRKLLHSIDTGHSANIFCTKFVPETSDELVVAGAGDAEVR 117

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFNLSR SGR  DDN+I PSALYQCHTRRVKKLAVEVGNP+VVWSASEDGTLRQHDFR+G
Sbjct: 118 LFNLSRLSGRSPDDNSIAPSALYQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREG 177

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAGSSH ECRNILLDLR GAKRSLADPPKQTL+L+SCDIS++RPHLLLVGGSDAFA
Sbjct: 178 ASCPPAGSSH-ECRNILLDLRSGAKRSLADPPKQTLALRSCDISTSRPHLLLVGGSDAFA 236

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPLTSC+KRMSPPPCVNYFCPMHLSE GRSSLHLTHVTFSPNG+EVLLSYSG
Sbjct: 237 RLYDRRMLPPLTSCRKRMSPPPCVNYFCPMHLSERGRSSLHLTHVTFSPNGDEVLLSYSG 296

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VNH+GG A+RYT GD SK+M+F PTLNGLELQP      +     +   ++ L
Sbjct: 297 EHVYLMNVNHSGGTAVRYTTGDTSKLMTFAPTLNGLELQPLPSCVFKRQSHSKTNGSSML 356

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KCR LV+IA  SLEEG   +YGIEACNEVL+GH   IGP LRHECLCIRAALLLKRKWK
Sbjct: 357 EKCRRLVQIAEKSLEEGTCYFYGIEACNEVLDGHGRVIGPTLRHECLCIRAALLLKRKWK 416

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           ND  MAIRDC+NARRIDSSSFRA  YMSEAL +L K+KEAL+F+IAAQC  P N+ +A  
Sbjct: 417 NDVHMAIRDCFNARRIDSSSFRALYYMSEALSRLGKHKEALEFSIAAQCSAPGNTEVAVL 476

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           +E+I+K++A A   K++K NDG  RSE R GR LSLSDI+Y SEANS+AS DGP S+RED
Sbjct: 477 MEDIRKNLATA--GKSSKENDGATRSETRNGRALSLSDILYHSEANSEASHDGPGSDRED 534

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS 600
           SDYDEE+E+DF TSV GDEGRDVE N LHGSLN+RIHR+GDSAR++   NGS GSP SSS
Sbjct: 535 SDYDEELELDFETSVSGDEGRDVEPNILHGSLNLRIHRKGDSARDSSCTNGSCGSP-SSS 593

Query: 601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 660
           QNDR PYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDY+ASGSDDGRWFIWEKQTGR
Sbjct: 594 QNDRTPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYVASGSDDGRWFIWEKQTGR 653

Query: 661 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLE 720
           LIKMLLGDEAVVNC+QCHPFDCVVATSGIDNTIKIWTPSASVPSIV+GGAAGP+T++VLE
Sbjct: 654 LIKMLLGDEAVVNCIQCHPFDCVVATSGIDNTIKIWTPSASVPSIVAGGAAGPETSNVLE 713

Query: 721 AMESNQRKLSRNREHSL 737
           AMESNQR+L  NRE  L
Sbjct: 714 AMESNQRRLCHNREAIL 730

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142032|emb|CBI19235.3| unnamed protein product [Vitis vinifera]

 Score = 1185 bits (3066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/737 (76%), Positives = 641/737 (86%), Gaps = 1/737 (0%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           ME   FHD ++Y+ +D R  D R DV+ SLQMHSSL+RRL+QE ELEGHQGCVN ++WNS
Sbjct: 1   METTNFHDSNLYNFVDGRSIDFRHDVSRSLQMHSSLLRRLTQEGELEGHQGCVNTVAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           +GSLLISGSDDT IN+W+Y SRKLLH IETGHSAN+FC KF+PETSDELV SGAGDAEVR
Sbjct: 61  RGSLLISGSDDTRINIWNYPSRKLLHCIETGHSANIFCAKFIPETSDELVASGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LF+LSR SGRG D+NAITPSAL+QCHTRRVKKLAVEVGNP+VVWSASEDGTLRQHDFR+G
Sbjct: 121 LFHLSRLSGRGPDENAITPSALFQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREG 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAGSSHQECRN+LLDLRCGAK+SLADPPKQ LSLKSCDISSTRPHLLLVGGSDAFA
Sbjct: 181 ASCPPAGSSHQECRNVLLDLRCGAKKSLADPPKQCLSLKSCDISSTRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPLTSC K M+PPPCVNYFCPMHLS+HGRSSLHLTHVTFSPNGEEVL+SYS 
Sbjct: 241 RLYDRRMLPPLTSCGKTMTPPPCVNYFCPMHLSDHGRSSLHLTHVTFSPNGEEVLISYSA 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLMDVNHA G  + Y  GDA K+M+ +P L+G+    P+ D    +  ++  +A  L
Sbjct: 301 EHVYLMDVNHACGSTVCYAPGDALKLMNPSPILDGIGFGSPVSDAFTYDFSMKSNIAAKL 360

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KCR LV+ A   L+EG   +YGIEACNEVL+GH   IGP L+H+CLC RAALLLKRKWK
Sbjct: 361 DKCRKLVQFAERCLKEGTDYFYGIEACNEVLDGHPHEIGPTLKHDCLCTRAALLLKRKWK 420

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           NDA MAIRDC  ARRID+SSF+A  YMSEAL QL K+KEAL+FA+A+QCL P +S +AE+
Sbjct: 421 NDAHMAIRDCNRARRIDTSSFKALFYMSEALLQLNKHKEALEFAVASQCLAPYDSEVAER 480

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VE+IKKH+AAAE EK+NK+NDG  RSE R+GR LSLS+I+YRSEANSDASQDGPRSERED
Sbjct: 481 VEDIKKHLAAAEAEKSNKSNDGVPRSETRSGRFLSLSEILYRSEANSDASQDGPRSERED 540

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS 600
           SDYDEE+E+DF TSV GDEGRDVE+N LHGSLN+RIHRR DSARET   NG+ GSP +SS
Sbjct: 541 SDYDEELELDFETSVSGDEGRDVESNILHGSLNLRIHRRCDSARETSGTNGACGSP-TSS 599

Query: 601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 660
           +ND+  YQPET IDMKQRYVGHCN+GTDIKQASFLG RG+Y+ASGSDDGRWFIW+K+TGR
Sbjct: 600 RNDKTTYQPETAIDMKQRYVGHCNIGTDIKQASFLGCRGEYVASGSDDGRWFIWDKRTGR 659

Query: 661 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLE 720
           LIKML+GDE VVNCVQCHPFDC VATSGIDNTIKIWTPSA +PSIV+GGAAGP+TADVLE
Sbjct: 660 LIKMLMGDEHVVNCVQCHPFDCTVATSGIDNTIKIWTPSAPIPSIVAGGAAGPETADVLE 719

Query: 721 AMESNQRKLSRNREHSL 737
           AME+NQRKL RNR+  L
Sbjct: 720 AMENNQRKLCRNRDAIL 736

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436964|ref|XP_004136262.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Cucumis sativus] gi|449497029|ref|XP_004160293.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Cucumis sativus]

 Score = 1117 bits (2890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/737 (72%), Positives = 619/737 (83%), Gaps = 4/737 (0%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           ME+F FHDG++  +L++RH + R D  + LQMHSS ++RLSQE+ELEGHQGCVNA++WNS
Sbjct: 1   MEDFAFHDGNVCALLESRHINFRQDPAYGLQMHSSFIQRLSQEKELEGHQGCVNAVAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           +GSLLISGSDDT IN+WSYS RKLLHS++TGHSAN+FCTKFVPE SD+LV+SGAGDAEVR
Sbjct: 61  RGSLLISGSDDTRINIWSYSGRKLLHSVDTGHSANIFCTKFVPEMSDDLVLSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFNLSR  GRG DDN I PSALY+CH RRVKKLAVE+GNP+VVWSASEDGTLRQHDFR+G
Sbjct: 121 LFNLSRLRGRGQDDNPIAPSALYRCHARRVKKLAVEIGNPNVVWSASEDGTLRQHDFREG 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
            SCPP G+SHQEC N+LLDLRCGAKRSLADPP+QTL+LKSCDISSTRPHLLLVGGSDAFA
Sbjct: 181 MSCPPDGASHQECHNVLLDLRCGAKRSLADPPRQTLALKSCDISSTRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPL+S QKRMSPPPCV+YFCPMHLS+  RS LHLTHVTFSPNGEE+LLSYSG
Sbjct: 241 RLYDRRMLPPLSSSQKRMSPPPCVSYFCPMHLSDRVRSGLHLTHVTFSPNGEEILLSYSG 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VNH G   M+YT GD SK+MSFTP LNG ELQ  + +      R        L
Sbjct: 301 EHVYLMNVNHGGLGTMQYTSGDVSKLMSFTPVLNGFELQHHVSNLSNNGSRFNLTSIFQL 360

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            + R L++IA   LE G + + GIEACNE+L+G+   IG +L+H+ LC RAALLLKRKWK
Sbjct: 361 DRSRKLLQIAEKCLEGGNY-FGGIEACNEILDGNGRNIGVILKHDSLCTRAALLLKRKWK 419

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           ND  MAIRDCY+AR+ID SSFRAH YM EAL QL ++KEALDFA AAQCL PSNS +AEK
Sbjct: 420 NDVHMAIRDCYSARKIDHSSFRAHYYMCEALSQLGRHKEALDFAFAAQCLAPSNSEVAEK 479

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VE+IK+ +AAAE EK+NK NDG  +S P  G VLSLSD +YRS+ANSD SQDG RSERED
Sbjct: 480 VESIKRDLAAAELEKSNKGNDGALKSAP-LGGVLSLSDFLYRSDANSDVSQDGLRSERED 538

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS 600
           SDYDEEVE+DF T + GDE  DV++N LHGSLN+RIHRR D +RE V  NGS GSP SSS
Sbjct: 539 SDYDEEVELDFET-LSGDESHDVDSNVLHGSLNLRIHRRIDPSRERVGPNGSCGSP-SSS 596

Query: 601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 660
           QND   YQPE VIDMKQRYVGHCN+GTDIKQASFLGQ+G+Y+ASGSDDGRWFIWEK+TGR
Sbjct: 597 QNDATLYQPEPVIDMKQRYVGHCNIGTDIKQASFLGQKGEYVASGSDDGRWFIWEKETGR 656

Query: 661 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLE 720
           LIK+L+GD AVVNCVQ HPFDC +ATSGIDNTIK+WTP+A VPS+V+GGA GP  ADVL 
Sbjct: 657 LIKILVGDGAVVNCVQSHPFDCAIATSGIDNTIKLWTPTAPVPSVVAGGAVGPQEADVLA 716

Query: 721 AMESNQRKLSRNREHSL 737
            +E+NQR+L RNRE  L
Sbjct: 717 VIENNQRRLCRNREAIL 733

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811205|ref|XP_002873486.1| hypothetical protein ARALYDRAFT_487925 [Arabidopsis lyrata subsp. lyrata] gi|297319323|gb|EFH49745.1| hypothetical protein ARALYDRAFT_487925 [Arabidopsis lyrata subsp. lyrata]

 Score = 1093 bits (2828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/740 (72%), Positives = 619/740 (83%), Gaps = 14/740 (1%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           MEN  FHDG+I+++L TR  D   +V+  +Q+HSSLVRRLSQE+ELEGHQGCVN ++WNS
Sbjct: 1   MENLSFHDGNIFNLLHTRSQDPSHEVDQRMQLHSSLVRRLSQEQELEGHQGCVNTLAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
            GSLLISGSDD  IN+W+YSSR LLHSI+TGH+AN+FCTKFVPETSDELVVSGAGDAEVR
Sbjct: 61  NGSLLISGSDDLRINIWNYSSRTLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFNLS  SGR  DDNAITPSALYQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+ 
Sbjct: 121 LFNLSHLSGRAEDDNAITPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAG++HQECR++LLDLR GAKR+LADPPKQTLSLKSCDIS+TRPHLLLVGGSDAFA
Sbjct: 181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPLTS +KRM PPPCVNYFCPMHLS+ GR++LHLTHVTFSPNGEEVLLSYSG
Sbjct: 241 RLYDRRMLPPLTSSRKRMPPPPCVNYFCPMHLSDRGRTNLHLTHVTFSPNGEEVLLSYSG 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VN+  G  ++YT GD   + SF+  L+ +E  P +    Q         AT +
Sbjct: 301 EHVYLMNVNNGTG-ILQYTQGDVDNLFSFSNNLHDVEYPPQVSTTPQNGFHRNCNAAT-V 358

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KC  LVEIA+ SLEEG   +Y IEA NEVL+GH + I   LRHECLC RAALLLKRKWK
Sbjct: 359 KKCTELVEIAKRSLEEGTDVFYAIEAANEVLDGHSNDIDSALRHECLCTRAALLLKRKWK 418

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           NDA MA+RDC+NAR+ID+SSF+AH YMSEAL+QL + KEALDFA AAQ L+PS++ +  K
Sbjct: 419 NDAHMAVRDCHNARKIDASSFKAHYYMSEALQQLGRCKEALDFANAAQHLNPSDADIVAK 478

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VE+IK+ + AA +EKN +   G       T RVLSLSDI+YRSEANSD+S D  RSERED
Sbjct: 479 VESIKRDLQAAGSEKNEETGAG-------TTRVLSLSDILYRSEANSDSSHDMSRSERED 531

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSAR---ETVDANGSSGSPS 597
           SDYDEE+E+D  TS+  DEGRD E+N + GSLN+RIHR GD  +    TVD N SSG+ +
Sbjct: 532 SDYDEELELDIQTSLSDDEGRDPESNAMRGSLNLRIHRVGDDDKPMENTVD-NASSGT-A 589

Query: 598 SSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQ 657
           SSSQNDR  YQPE  IDMK+RYVGHCNVGTDIKQASFLGQRG+YIASGSDDGRWFIWEKQ
Sbjct: 590 SSSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEKQ 649

Query: 658 TGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTAD 717
           TGRL+K+L+GDEAV+NC+QCHPFD VVATSGIDNTIKIW+P+ASVPS+V+GG+AGP TA+
Sbjct: 650 TGRLMKVLVGDEAVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSVVAGGSAGPATAN 709

Query: 718 VLEAMESNQRKLSRNREHSL 737
           V+E MESNQ+KLSRNRE+ L
Sbjct: 710 VVEVMESNQQKLSRNRENPL 729

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187604|ref|NP_001190286.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana] gi|8979728|emb|CAB96849.1| putative protein [Arabidopsis thaliana] gi|332004229|gb|AED91612.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana]

 Score = 1092 bits (2823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/739 (72%), Positives = 615/739 (83%), Gaps = 13/739 (1%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M+N  FHDG+I+++L TR  D   +V+  +Q HSSLVRRLSQE+ELEGHQGCVNA++WNS
Sbjct: 1   MDNLSFHDGNIFNLLHTRSQDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
            GSLLISGSDD  IN+W+YSSRKLLHSI+TGH+AN+FCTKFVPETSDELVVSGAGDAEVR
Sbjct: 61  NGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFN SR SGR  DDNAI PSALYQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+ 
Sbjct: 121 LFNTSRLSGRAEDDNAIIPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAG++HQECR++LLDLR GAKR+LADPPKQTLSLKSCDIS+TRPHLLLVGGSDAFA
Sbjct: 181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPL S +KRM PPPCVNYFCPMHLSE GR++LHLTHVTFSPNGEEVLLSYSG
Sbjct: 241 RLYDRRMLPPLASSRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSG 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VN+  G  M+YT GD   + SF+  L+ +E  P +    Q     R   A  +
Sbjct: 301 EHVYLMNVNNGTG-IMQYTPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFH-RSSNAATV 358

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KC  LVEIA+ SLEEG   +Y IEA NEVL+ H + I   LRHECLC RAALLLKRKWK
Sbjct: 359 KKCTELVEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRKWK 418

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           NDA MA+RDC+NARRID+SSF+AH YMSEAL+QL K KEALDFA AAQ ++PS++ +  K
Sbjct: 419 NDAHMAVRDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIVAK 478

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VE+IK+ + AA  EKN +   G       T RVLSLSDI+YRSEANSD+S D  RSERED
Sbjct: 479 VESIKRDLQAAGAEKNEETGAG-------TTRVLSLSDILYRSEANSDSSHDMSRSERED 531

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSA--RETVDANGSSGSPSS 598
           SDYDEE+E+D  TS+  DEGRD ++N + GSLN+RIHR GD      TVD N SSG+ +S
Sbjct: 532 SDYDEELELDIQTSLSDDEGRDTDSNSMRGSLNLRIHRVGDDKPMENTVD-NASSGT-AS 589

Query: 599 SSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT 658
           SSQNDR  YQPE  IDMK+RYVGHCNVGTDIKQASFLGQRG+YIASGSDDGRWFIWEKQT
Sbjct: 590 SSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEKQT 649

Query: 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADV 718
           GRL+K+L+GDE+V+NC+QCHPFD VVATSGIDNTIKIW+P+ASVPSIV+GG+AGP TA+V
Sbjct: 650 GRLMKVLVGDESVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSIVAGGSAGPATANV 709

Query: 719 LEAMESNQRKLSRNREHSL 737
           +E MESNQ+KLSRNRE+ L
Sbjct: 710 VEVMESNQQKLSRNRENPL 728

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515704|ref|XP_003526538.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Glycine max]

 Score = 1090 bits (2819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/733 (72%), Positives = 623/733 (84%), Gaps = 3/733 (0%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M++ PF DG+I+ +LD+R+  +  DVNHSL  HSSL+RRLSQERELEGH GCVNA++WNS
Sbjct: 1   MDSVPFRDGNIHTILDSRYLHSPLDVNHSLHTHSSLIRRLSQERELEGHTGCVNAVAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           KGSLLISGSDD  IN+WSYS  KLLHSI+TGH+AN+FCTKF+PETSDELV SGAGDAEVR
Sbjct: 61  KGSLLISGSDDQRINIWSYSGWKLLHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAI-TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179
           LFNLSR +G G  DNAI  PSA YQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+
Sbjct: 121 LFNLSRLNGSGFSDNAIIAPSAYYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFRE 180

Query: 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239
           G+SCPPAGSSHQECRNILLDLR G+KRSLADPPKQ L+LKSCDISST+PHLLLVGGSDAF
Sbjct: 181 GTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLALKSCDISSTKPHLLLVGGSDAF 240

Query: 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299
           ARLYDRRMLPPL+SCQKRMSPPPCVNYFCPMHLS+ G  SLHLTHVTFSP+G EVLLSYS
Sbjct: 241 ARLYDRRMLPPLSSCQKRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYS 300

Query: 300 GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATG 359
           GEHVYLM+VNHAG + M+YT GD SK+M+++PT+NG E+QP + +       ++  +A  
Sbjct: 301 GEHVYLMNVNHAGVKEMQYTSGDESKLMTYSPTINGSEMQPCVSNVFPNRFPIKKNIAAK 360

Query: 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKW 419
           L KCR  ++ A+ SL+ G  PYYGI+ACNEVL G+   IGP L+HECLC RAALL+KRKW
Sbjct: 361 LDKCRKQIKYAKKSLDNGI-PYYGIDACNEVLNGYSHIIGPALKHECLCTRAALLVKRKW 419

Query: 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479
           KNDA MAIRDCY AR ID+SS++A  YMSEAL QL ++++AL+FA+A+  L PS S +AE
Sbjct: 420 KNDAHMAIRDCYAARIIDNSSYKALYYMSEALSQLGRHEDALEFAVASHSLAPSKSEVAE 479

Query: 480 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERE 539
           +V N+K+ IA AE EKN++ NDG +R + R GR+LSLSDI+Y  E+NSD   DG RSER+
Sbjct: 480 RVANVKRDIALAEAEKNSQTNDGASRFDSRGGRILSLSDILYCPESNSDDPHDGSRSERD 539

Query: 540 DSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSS 599
           DSDYD+E+E+DF TS+ GDEG D+E+N LHG+LN+RIH RGDS R+  DA+GS  SPSSS
Sbjct: 540 DSDYDDELELDFETSISGDEGHDLESNILHGNLNLRIHGRGDS-RDNADASGSCESPSSS 598

Query: 600 SQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTG 659
           SQN R  YQPE  +DMKQR+VGHCN+GTDIKQASFLGQRG+Y+ASGSDDGRWFIWEK TG
Sbjct: 599 SQNSRTSYQPEPAVDMKQRFVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKCTG 658

Query: 660 RLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVL 719
           RLIKML GDE+VVNCVQCHPFD VVATSGID+TIKIWTP+A VPS V+GG+AGP+T DVL
Sbjct: 659 RLIKMLSGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPTAPVPSSVAGGSAGPETGDVL 718

Query: 720 EAMESNQRKLSRN 732
            AMESNQ+KLSR+
Sbjct: 719 VAMESNQQKLSRS 731

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416416|ref|NP_568242.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana] gi|14532680|gb|AAK64141.1| unknown protein [Arabidopsis thaliana] gi|23297429|gb|AAN12885.1| unknown protein [Arabidopsis thaliana] gi|332004228|gb|AED91611.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana]

 Score = 1088 bits (2813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/741 (71%), Positives = 614/741 (82%), Gaps = 14/741 (1%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M+N  FHDG+I+++L TR  D   +V+  +Q HSSLVRRLSQE+ELEGHQGCVNA++WNS
Sbjct: 1   MDNLSFHDGNIFNLLHTRSQDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
            GSLLISGSDD  IN+W+YSSRKLLHSI+TGH+AN+FCTKFVPETSDELVVSGAGDAEVR
Sbjct: 61  NGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFN SR SGR  DDNAI PSALYQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+ 
Sbjct: 121 LFNTSRLSGRAEDDNAIIPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAG++HQECR++LLDLR GAKR+LADPPKQTLSLKSCDIS+TRPHLLLVGGSDAFA
Sbjct: 181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPL S +KRM PPPCVNYFCPMHLSE GR++LHLTHVTFSPNGEEVLLSYSG
Sbjct: 241 RLYDRRMLPPLASSRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSG 300

Query: 301 EHVYLMDVNHA--GGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVAT 358
           EHVYLM+VN+       M+YT GD   + SF+  L+ +E  P +    Q         AT
Sbjct: 301 EHVYLMNVNNGICSTGIMQYTPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFHRSSNAAT 360

Query: 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK 418
            + KC  LVEIA+ SLEEG   +Y IEA NEVL+ H + I   LRHECLC RAALLLKRK
Sbjct: 361 -VKKCTELVEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRK 419

Query: 419 WKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478
           WKNDA MA+RDC+NARRID+SSF+AH YMSEAL+QL K KEALDFA AAQ ++PS++ + 
Sbjct: 420 WKNDAHMAVRDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIV 479

Query: 479 EKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSER 538
            KVE+IK+ + AA  EKN +   G       T RVLSLSDI+YRSEANSD+S D  RSER
Sbjct: 480 AKVESIKRDLQAAGAEKNEETGAG-------TTRVLSLSDILYRSEANSDSSHDMSRSER 532

Query: 539 EDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSA--RETVDANGSSGSP 596
           EDSDYDEE+E+D  TS+  DEGRD ++N + GSLN+RIHR GD      TVD N SSG+ 
Sbjct: 533 EDSDYDEELELDIQTSLSDDEGRDTDSNSMRGSLNLRIHRVGDDKPMENTVD-NASSGT- 590

Query: 597 SSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEK 656
           +SSSQNDR  YQPE  IDMK+RYVGHCNVGTDIKQASFLGQRG+YIASGSDDGRWFIWEK
Sbjct: 591 ASSSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEK 650

Query: 657 QTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTA 716
           QTGRL+K+L+GDE+V+NC+QCHPFD VVATSGIDNTIKIW+P+ASVPSIV+GG+AGP TA
Sbjct: 651 QTGRLMKVLVGDESVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSIVAGGSAGPATA 710

Query: 717 DVLEAMESNQRKLSRNREHSL 737
           +V+E MESNQ+KLSRNRE+ L
Sbjct: 711 NVVEVMESNQQKLSRNRENPL 731

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465333|ref|XP_003602948.1| DDB1- and CUL4-associated factor [Medicago truncatula] gi|355491996|gb|AES73199.1| DDB1- and CUL4-associated factor [Medicago truncatula]

 Score = 1085 bits (2807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/739 (71%), Positives = 618/739 (83%), Gaps = 11/739 (1%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M++ PF DG+I+ +LD+R+  +RPDVN SLQ HSSL+RRLSQE+ELEGH GCVNAI+WNS
Sbjct: 1   MDSSPFLDGNIHRILDSRYLHSRPDVNQSLQTHSSLIRRLSQEKELEGHLGCVNAIAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           KGSLL+SGSDDT INVWSY+ +KL+HSI+TGH+AN+FCTKF+PETSDELV SGAGDAEVR
Sbjct: 61  KGSLLVSGSDDTRINVWSYAGQKLVHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFN SR SG GL+DN ITPSALYQCHTRRVKKL VE GNP+VVWSASEDGTLRQHDFR+G
Sbjct: 121 LFNRSRVSGNGLNDNPITPSALYQCHTRRVKKL-VENGNPNVVWSASEDGTLRQHDFREG 179

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAGS  QEC N+LLDLR GAKRSL DPPKQ L+LKS DISSTRPHLLLVGGSDAFA
Sbjct: 180 TSCPPAGSPRQECHNVLLDLRNGAKRSLGDPPKQVLALKSFDISSTRPHLLLVGGSDAFA 239

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPL+SC KRM PPPCVNYFCPMHLS+ G  SLHLTHVTFSP+G EVLLSYSG
Sbjct: 240 RLYDRRMLPPLSSCGKRMPPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGSEVLLSYSG 299

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VNHAG   ++Y+ GD SK+M+++P++NGLELQP + +        +  +   L
Sbjct: 300 EHVYLMNVNHAGVNEVQYSSGDVSKLMTYSPSVNGLELQPFVSNVFTNGFHTKKNITAKL 359

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KCR L++  + SL+EG  PYYGIEACNEVL G+   IGP L+ ECLC RAALLLKRKWK
Sbjct: 360 DKCRKLIKYGKKSLDEGA-PYYGIEACNEVLIGYNHIIGPALKQECLCTRAALLLKRKWK 418

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           NDA MAIRDC+ AR+ D S+++   YMSEAL QL K+KEALDFA+A+  L PS S +AE+
Sbjct: 419 NDAHMAIRDCHAARKFDKSAYKPLYYMSEALSQLGKHKEALDFAVASHSLAPSKSEVAER 478

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VEN KK I  AETEKN+K N+G      R GR+LSLSDI+YRSEANSD SQDG RS+R+D
Sbjct: 479 VENAKKDIVLAETEKNSKTNNG------RGGRMLSLSDILYRSEANSDTSQDGQRSDRDD 532

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDA--NGSSGSPSS 598
           SDY+EE+E+DF TSV GDE  D ++N LH SLN+RIHRRGDS RE V+A  +  S S SS
Sbjct: 533 SDYEEEMELDFETSVSGDEEHDSDSNILHRSLNLRIHRRGDS-RENVEASGSDESPSSSS 591

Query: 599 SSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT 658
           SSQN R  YQPE  IDMKQR++GHCNVGTDIKQA+FLGQ+G+Y+ASGSDDGRWFIWEK+T
Sbjct: 592 SSQNGRASYQPEAAIDMKQRFIGHCNVGTDIKQANFLGQKGEYVASGSDDGRWFIWEKRT 651

Query: 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADV 718
           GRL+K+L GDE+VVNCVQCHPFD VVATSGIDNTIKIWTPSA V S V+GG+AGP+T DV
Sbjct: 652 GRLMKLLSGDESVVNCVQCHPFDFVVATSGIDNTIKIWTPSAPVASSVAGGSAGPETGDV 711

Query: 719 LEAMESNQRKLSRNREHSL 737
           L AME+NQ+KLSRNR+  L
Sbjct: 712 LGAMENNQQKLSRNRDSML 730

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508017|ref|XP_003522759.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Glycine max]

 Score = 1084 bits (2804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/733 (72%), Positives = 619/733 (84%), Gaps = 3/733 (0%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M++ PF DGSI+ +LD+R+  +  DV+HSL  HSSL+RRLSQE ELEGH GCVNA++WNS
Sbjct: 1   MDSVPFRDGSIHTILDSRYFHSPLDVSHSLHTHSSLIRRLSQETELEGHTGCVNAVAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           KGS+LISGSDD  IN+WSYS  KLLHSI+TGH+AN+FCTKF+PETSDELV SGAGDA VR
Sbjct: 61  KGSILISGSDDLRINIWSYSGWKLLHSIDTGHTANIFCTKFIPETSDELVASGAGDAGVR 120

Query: 121 LFNLSRFSGRGLDDNAI-TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179
           LFNLSR SG G  DNAI  PSA YQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+
Sbjct: 121 LFNLSRLSGSGFSDNAIIAPSAHYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFRE 180

Query: 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239
           G+SCPPAGSSHQECRNILLDLR G+KRSLADPPKQ L+LKSCDISSTRPHLLLVGGSDAF
Sbjct: 181 GTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAF 240

Query: 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299
           ARLYDRRMLPPL+SC KRMSPPPCVNYFCPMHLS+HG  SLHLTHVTFSP+G EVLLSYS
Sbjct: 241 ARLYDRRMLPPLSSCWKRMSPPPCVNYFCPMHLSDHGHPSLHLTHVTFSPDGHEVLLSYS 300

Query: 300 GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATG 359
           GEHVYLM+VNHAG   M+YT GD SK+M+++PT+NG E+QP + +       ++  +A  
Sbjct: 301 GEHVYLMNVNHAGVNEMQYTSGDNSKLMTYSPTINGTEMQPCVSNVFPNGFPIKKNIAAK 360

Query: 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKW 419
           L KCR L++ A+ SL+ G  PYYGI+ACNEVL G+   IGP L+HECLC RAALL+KRKW
Sbjct: 361 LDKCRKLIKYAKKSLDNGT-PYYGIDACNEVLNGYSHIIGPALKHECLCTRAALLVKRKW 419

Query: 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479
           KNDA M IRDCY AR ID+SS++A  YMSEAL QL ++++AL+FA+A+  L PS S +AE
Sbjct: 420 KNDAHMVIRDCYAAREIDNSSYKALYYMSEALSQLGRHEDALEFAVASHSLAPSKSEVAE 479

Query: 480 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERE 539
           +V N+K+ IA AE EK++K NDG +R + R GR+LSLSDI+YR  +N D  QDG R ER+
Sbjct: 480 RVANVKRDIALAEAEKSSKTNDGASRFDSRGGRILSLSDILYRPGSNGDPPQDGSRLERD 539

Query: 540 DSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSS 599
           DSDYDEE+E+DF TS+ GDE  D+E+N LHGSLN+RIHRRGDS R+   A+GS  SPSSS
Sbjct: 540 DSDYDEELELDFETSISGDEEHDLESNILHGSLNLRIHRRGDS-RDNARASGSCESPSSS 598

Query: 600 SQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTG 659
           SQN R  YQPE  +DMKQR+VGHCN+GTDIKQASFLGQRG+Y+ASGSDDGRW+IWEK+TG
Sbjct: 599 SQNSRTSYQPEPAVDMKQRFVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWYIWEKRTG 658

Query: 660 RLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVL 719
           RLIKML GDE+VVNCVQCHPFD VVATSGID+TIKIWTP+A VPS V+GG+AGP+T DVL
Sbjct: 659 RLIKMLNGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPNAPVPSSVAGGSAGPETGDVL 718

Query: 720 EAMESNQRKLSRN 732
            AMESNQ+KLSR+
Sbjct: 719 VAMESNQQKLSRS 731

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	737
TAIR|locus:2183735	757	ASG2 "AT5G10940" [Arabidopsis	0.986	0.960	0.682	8.5e-271
UNIPROTKB|Q8N5D0	677	WDTC1 "WD and tetratricopeptid	0.561	0.611	0.298	8.9e-65
UNIPROTKB|E2RA21	679	WDTC1 "Uncharacterized protein	0.561	0.609	0.298	9.3e-65
MGI|MGI:2685541	677	Wdtc1 "WD and tetratricopeptid	0.339	0.369	0.344	1.3e-64
UNIPROTKB|B6CVL4	678	WDTC1 "Uncharacterized protein	0.561	0.610	0.298	1.5e-64
RGD|1310362	676	Wdtc1 "WD and tetratricopeptid	0.339	0.369	0.341	2.9e-64
UNIPROTKB|E1C4X5	671	WDTC1 "Uncharacterized protein	0.347	0.381	0.327	7.1e-63
FB|FBgn0000057	628	adp "adipose" [Drosophila mela	0.153	0.179	0.508	1.3e-57
POMBASE|SPBC609.03	809	iqw1 "WD repeat protein, Iqw1"	0.415	0.378	0.307	3.3e-49
UNIPROTKB|F1NU19	825	F1NU19 "Uncharacterized protei	0.242	0.216	0.338	6.7e-46

TAIR|locus:2183735 ASG2 "AT5G10940" [Arabidopsis thaliana (taxid:3702)]

 Score = 2604 (921.7 bits), Expect = 8.5e-271, P = 8.5e-271
 Identities = 506/741 (68%), Positives = 583/741 (78%)

Query:     1 MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
             M+N  FHDG+I+++L TR  D   +V+  +Q HSSLVRRLSQE+ELEGHQGCVNA++WNS
Sbjct:     1 MDNLSFHDGNIFNLLHTRSQDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNS 60

Query:    61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
              GSLLISGSDD  IN+W+YSSRKLLHSI+TGH+AN+FCTKFVPETSDELVVSGAGDAEVR
Sbjct:    61 NGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120

Query:   121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
             LFN SR SGR  DDNAI PSALYQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+ 
Sbjct:   121 LFNTSRLSGRAEDDNAIIPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180

Query:   181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
             +SCPPAG++HQECR++LLDLR GAKR+LADPPKQTLSLKSCDIS+TRPHLLLVGGSDAFA
Sbjct:   181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240

Query:   241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
             RLYDRRMLPPL S +KRM PPPCVNYFCPMHLSE GR++LHLTHVTFSPNGEEVLLSYSG
Sbjct:   241 RLYDRRMLPPLASSRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSG 300

Query:   301 EHVYLMDVNHA--GGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVAT 358
             EHVYLM+VN+       M+YT GD   + SF+  L+ +E  P +    Q         AT
Sbjct:   301 EHVYLMNVNNGICSTGIMQYTPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFHRSSNAAT 360

Query:   359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK 418
              + KC  LVEIA+ SLEEG   +Y IEA NEVL+ H + I   LRHECLC RAALLLKRK
Sbjct:   361 -VKKCTELVEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRK 419

Query:   419 WKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478
             WKNDA MA+RDC+NARRID+SSF+AH YMSEAL+QL K KEALDFA AAQ ++PS++ + 
Sbjct:   420 WKNDAHMAVRDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIV 479

Query:   479 EKVENIKKHIXXXXXXXXXXXXDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPXXXX 538
              KVE+IK+ +             G       T RVLSLSDI+YRSEANSD+S D      
Sbjct:   480 AKVESIKRDLQAAGAEKNEETGAG-------TTRVLSLSDILYRSEANSDSSHDMSRSER 532

Query:   539 XXXXXXXXXXXXFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSA--RETVDANXXXXXX 596
                           TS+  DEGRD ++N + GSLN+RIHR GD      TVD        
Sbjct:   533 EDSDYDEELELDIQTSLSDDEGRDTDSNSMRGSLNLRIHRVGDDKPMENTVD--NASSGT 590

Query:   597 XXXXQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEK 656
                 QNDR  YQPE  IDMK+RYVGHCNVGTDIKQASFLGQRG+YIASGSDDGRWFIWEK
Sbjct:   591 ASSSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEK 650

Query:   657 QTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTA 716
             QTGRL+K+L+GDE+V+NC+QCHPFD VVATSGIDNTIKIW+P+ASVPSIV+GG+AGP TA
Sbjct:   651 QTGRLMKVLVGDESVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSIVAGGSAGPATA 710

Query:   717 DVLEAMESNQRKLSRNREHSL 737
             +V+E MESNQ+KLSRNRE+ L
Sbjct:   711 NVVEVMESNQQKLSRNRENPL 731

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|Q8N5D0 WDTC1 "WD and tetratricopeptide repeats protein 1" [Homo sapiens (taxid:9606)]

 Score = 427 (155.4 bits), Expect = 8.9e-65, Sum P(2) = 8.9e-65
 Identities = 140/469 (29%), Positives = 210/469 (44%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGA---KRSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGQLVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 321
                  P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +   +   YT  
Sbjct:   251 VAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY---KQRPYTFL 307

Query:   322 DASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE---VATGLGKCRMLVEIARNSLEEGK 378
                K  S     NG      + + +   + +      +    G     VE+    LE  K
Sbjct:   308 LPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVELPPY-LERVK 366

Query:   379 HPYYGIEACNEVLEG-HL-SGIGPMLRHECLCI--RAALLLKRKWKNDAQMAIRDCYNAR 434
                    AC +  +   L S       H  +    RAA  +KRKW  D   A+RDC  A 
Sbjct:   367 QQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAI 426

Query:   435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483
              ++    +AH  ++  L +L KY      A A +CLD       E+  +
Sbjct:   427 SLNPCHLKAHFRLARCLFEL-KY-----VAEALECLDDFKGKFPEQAHS 469

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0055082 "cellular chemical homeostasis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E2RA21 WDTC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 427 (155.4 bits), Expect = 9.3e-65, Sum P(2) = 9.3e-65
 Identities = 140/469 (29%), Positives = 210/469 (44%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGA---KRSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGQLVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 321
                  P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +   +   YT  
Sbjct:   251 VAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY---KQRPYTFL 307

Query:   322 DASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE---VATGLGKCRMLVEIARNSLEEGK 378
                K  S     NG      + + +   + +      +    G     VE+    LE  K
Sbjct:   308 LPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPENRGHVSPQVELPPY-LERVK 366

Query:   379 HPYYGIEACNEVLEG-HL-SGIGPMLRHECLCI--RAALLLKRKWKNDAQMAIRDCYNAR 434
                    AC +  +   L S       H  +    RAA  +KRKW  D   A+RDC  A 
Sbjct:   367 QQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAI 426

Query:   435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483
              ++    +AH  ++  L +L KY      A A +CLD       E+  +
Sbjct:   427 SLNPCHLKAHFRLARCLFEL-KY-----VAEALECLDDFKGKFPEQAHS 469

GO:0055082 "cellular chemical homeostasis" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:2685541 Wdtc1 "WD and tetratricopeptide repeats 1" [Mus musculus (taxid:10090)]

 Score = 375 (137.1 bits), Expect = 1.3e-64, Sum P(3) = 1.3e-64
 Identities = 100/290 (34%), Positives = 148/290 (51%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAK---RSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGPMVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             R  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMRQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSSLHL---THVTFSPNGEEVLLSYSGEHVYLMDVNH 310
                  P+ L ++  S L +   T+VTFSPNG E+L++  GE VYL D+ +
Sbjct:   251 VAGHLPVKLPDYN-SRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY 299

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0004857 "enzyme inhibitor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006006 "glucose metabolic process" evidence=IMP

GO:0008361 "regulation of cell size" evidence=IMP

GO:0032869 "cellular response to insulin stimulus" evidence=IMP

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0042393 "histone binding" evidence=IPI

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IMP;IDA

GO:0055082 "cellular chemical homeostasis" evidence=IMP

UNIPROTKB|B6CVL4 WDTC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 427 (155.4 bits), Expect = 1.5e-64, Sum P(2) = 1.5e-64
 Identities = 140/469 (29%), Positives = 210/469 (44%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGA---KRSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGQLVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 321
                  P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +   +   YT  
Sbjct:   251 VAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY---KQRPYTFL 307

Query:   322 DASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE---VATGLGKCRMLVEIARNSLEEGK 378
                K  S     NG      + + +   + +      +    G     VE+    LE  K
Sbjct:   308 LPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVELPPY-LERVK 366

Query:   379 HPYYGIEACNEVLEG-HL-SGIGPMLRHECLCI--RAALLLKRKWKNDAQMAIRDCYNAR 434
                    AC +  +   L S       H  +    RAA  +KRKW  D   A+RDC  A 
Sbjct:   367 QQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAI 426

Query:   435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483
              ++    +AH  ++  L +L KY      A A +CLD       E+  +
Sbjct:   427 SLNPCHLKAHFRLARCLFEL-KY-----VAEALECLDDFKGKFPEQAHS 469

GO:0055082 "cellular chemical homeostasis" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

RGD|1310362 Wdtc1 "WD and tetratricopeptide repeats 1" [Rattus norvegicus (taxid:10116)]

 Score = 372 (136.0 bits), Expect = 2.9e-64, Sum P(3) = 2.9e-64
 Identities = 99/290 (34%), Positives = 148/290 (51%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAK---RSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGPMVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSSLHL---THVTFSPNGEEVLLSYSGEHVYLMDVNH 310
                  P+ L ++  S L +   T+VTFSPNG E+L++  GE VYL D+ +
Sbjct:   251 VAGHLPVKLPDYN-SRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY 299

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0004857 "enzyme inhibitor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006006 "glucose metabolic process" evidence=IEA;ISO

GO:0008361 "regulation of cell size" evidence=IEA;ISO

GO:0032869 "cellular response to insulin stimulus" evidence=IEA;ISO

GO:0035264 "multicellular organism growth" evidence=IEA;ISO

GO:0042393 "histone binding" evidence=IEA;ISO

GO:0042826 "histone deacetylase binding" evidence=IEA;ISO

GO:0043086 "negative regulation of catalytic activity" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA;ISO

GO:0055082 "cellular chemical homeostasis" evidence=IEA;ISO

UNIPROTKB|E1C4X5 WDTC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 363 (132.8 bits), Expect = 7.1e-63, Sum P(3) = 7.1e-63
 Identities = 93/284 (32%), Positives = 143/284 (50%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P + D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHSGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216
                P+  WSA+EDG +RQ+D R+ S          E    L++ +C     L   P+   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSKRSEVLIDLTEYCGQLVEAKC-----LTVNPQDNN 198

Query:   217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYFC---- 268
              L    + ++ P + L             +  P     T C ++   P     Y+     
Sbjct:   199 YLA---VGASGPFVRLYDIRMIHNHRKSMKQCPSAGVHTFCDRQKPLPDGAAQYYVAGHL 255

Query:   269 PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310
             P+ L ++      L  T+VTFSP+G E+L++  GE VYL D+ +
Sbjct:   256 PVKLPDYNNRLRVLVATYVTFSPDGTELLVNMGGEQVYLFDLTY 299

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0055082 "cellular chemical homeostasis" evidence=IEA

FB|FBgn0000057 adp "adipose" [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
 Identities = 61/120 (50%), Positives = 81/120 (67%)

Query:   611 TVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEA 670
             T  D  QRYVGHCNV TDIK+A++LG +G++IA+GSDDG  +IWE  TG++  +   D A
Sbjct:   498 TARDYMQRYVGHCNVTTDIKEANYLGSQGEFIAAGSDDGNMYIWEGDTGKIRAVYRADSA 557

Query:   671 VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD-TADVLEAMESNQRKL 729
             +VNCVQ HP  C++ATSGID+ IKIW+P A+           P+  ADV   +E NQ K+
Sbjct:   558 IVNCVQPHPSICMLATSGIDHNIKIWSPCAA------SAEERPNLVADVTRFVEDNQEKM 611

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=IMP;TAS

GO:0009269 "response to desiccation" evidence=IMP

GO:0010891 "negative regulation of sequestering of triglyceride" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0010883 "regulation of lipid storage" evidence=IMP

POMBASE|SPBC609.03 iqw1 "WD repeat protein, Iqw1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 375 (137.1 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 103/335 (30%), Positives = 169/335 (50%)

Query:    15 LDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHI 74
             LD R    R  ++  +  +S+ +  +  ++EL GH GCVN + W++ G  L+SGSDDT +
Sbjct:    11 LDYRDWFQRK-ISRDIYGNSTWLTGIDLQKELTGHTGCVNTLDWSADGEFLLSGSDDTRL 69

Query:    75 NVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133
              VW  ++  K  H I TGH  N+F  KFVP +++  ++S +GD  ++LF+L      G+D
Sbjct:    70 IVWDVFNEYKPRHLISTGHVQNIFSAKFVPYSNNRQILSASGDKLIKLFDLDSSKEGGMD 129

Query:   134 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193
                 T +  + C    VK + V   N H     SEDGT RQ+D R+   C    +   +C
Sbjct:   130 HGMETQTRCWSCALDSVKNI-VPCDNGHTFLVCSEDGTARQYDIREPHVC----NQDLDC 184

Query:   194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253
              +IL++          +P +  ++L +  +S + P+   +GG+  +A LYDRRM+     
Sbjct:   185 PSILVNY---------NPYR--INLYTITMSPSNPYYFAIGGTHPYAFLYDRRMVKKSFR 233

Query:   254 CQKRMSPPP-----CVNYFCPM-HLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLM 306
                 M+  P     CV  F P    +  G    ++T   FS  N  E+L+S++ ++VYL 
Sbjct:   234 DDWTMNTSPEKDCRCVRKFSPDGSCNSQGILDRYITCCQFSAANPNELLVSWNSDYVYLF 293

Query:   307 DVNHAGGRAMRYT-VGDASKIMSFTPTLNGLELQP 340
              V+        +  + D++K  S  P+L  L+ QP
Sbjct:   294 HVHEDKSYTPTFNKIEDSNKKPS-KPSL--LQTQP 325

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0043234 "protein complex" evidence=NAS

UNIPROTKB|F1NU19 F1NU19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 6.7e-46, Sum P(3) = 6.7e-46
 Identities = 65/192 (33%), Positives = 98/192 (51%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             ++RL  E  L  H GCVN I WN  G  ++SGSDDT++ + +  SRK+L +I +GH AN+
Sbjct:     5 IQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTNLVITNPYSRKVLTTIRSGHRANI 64

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P T+D+ +VS +GD  +   N+ +       D        Y CH     ++   
Sbjct:    65 FSAKFLPCTNDKQIVSCSGDGVIFYTNVEQ-------DAETNRQCQYTCHYGTTYEIMTV 117

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN-ILLDLRCGAKRSLADPPKQT 215
               +P+   S  EDGT+R  D R  +SC     + ++C++ IL++ R  A      PP   
Sbjct:   118 PNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPIPY 172

Query:   216 LSLKSCDISSTR 227
                  C  SS R
Sbjct:   173 YLAVGCSDSSVR 184

GO:0005634 "nucleus" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.4660.1 hypothetical protein (756 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	737
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-06
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.003
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.004
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.004
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 48/219 (21%)

Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
              R L+GH G V  ++ ++ G+ L SGS D  I +W   + + + ++ TGH++ V    
Sbjct: 42  ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVA 100

Query: 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160
           F P     ++ S + D  ++++++                   + HT  V  +A      
Sbjct: 101 FSP--DGRILSSSSRDKTIKVWDVETG----------KCLTTLRGHTDWVNSVAFSPDGT 148

Query: 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220
            V  S+S+DGT++  D R G                                  TL+  +
Sbjct: 149 FVA-SSSQDGTIKLWDLRTGK------------------------------CVATLTGHT 177

Query: 221 CDISSTRPH----LLLVGGSDAFARLYDRRMLPPLTSCQ 255
            +++S         LL   SD   +L+D      L + +
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.1 bits (185), Expect = 9e-15
 Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 14/130 (10%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
             L GH G VN+++++  G  L+S S D  I +W  S+ K L ++  GH   V    F P
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSP 229

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
                L+ SG+ D  +R+++L                     HT  V  LA       + 
Sbjct: 230 --DGYLLASGSEDGTIRVWDLRTGE----------CVQTLSGHTNSVTSLAWSPDGKRLA 277

Query: 164 WSASEDGTLR 173
            S S DGT+R
Sbjct: 278 -SGSADGTIR 286

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 55/258 (21%), Positives = 91/258 (35%), Gaps = 69/258 (26%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
           R L+GH G V  ++++  G LL +GS D  I VW   + +LL ++  GH+  V       
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASA 61

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
                 + SG+ D  +RL++L   +G  +             HT  V  +A    +  ++
Sbjct: 62  --DGTYLASGSSDKTIRLWDLE--TGECVRT--------LTGHTSYVSSVAF-SPDGRIL 108

Query: 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223
            S+S D T++  D   G                                  TL   +  +
Sbjct: 109 SSSSRDKTIKVWDVETGK------------------------------CLTTLRGHTDWV 138

Query: 224 SSTRPH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279
           +S         +     D   +L+D             +    CV      H  E     
Sbjct: 139 NSVAFSPDGTFVASSSQDGTIKLWD-------------LRTGKCV-ATLTGHTGE----- 179

Query: 280 LHLTHVTFSPNGEEVLLS 297
             +  V FSP+GE++L S
Sbjct: 180 --VNSVAFSPDGEKLLSS 195

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 14/140 (10%)

Query: 42  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
               L GH   VN+++++  G+ + S S D  I +W   + K + ++ TGH+  V    F
Sbjct: 127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAF 185

Query: 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161
            P    E ++S + D  ++L++LS                  + H   V  +A       
Sbjct: 186 SP--DGEKLLSSSSDGTIKLWDLSTGK----------CLGTLRGHENGVNSVAFSPDGYL 233

Query: 162 VVWSASEDGTLRQHDFRQGS 181
           +  S SEDGT+R  D R G 
Sbjct: 234 LA-SGSEDGTIRVWDLRTGE 252

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 46  LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105
           L GH+  VN+++++  G LL SGS+D  I VW   + + + ++ +GH+ +V    + P+ 
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDG 273

Query: 106 SDELVVSGAGDAEVRLFN 123
               + SG+ D  +R+++
Sbjct: 274 KR--LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 70/319 (21%), Positives = 110/319 (34%), Gaps = 60/319 (18%)

Query: 42  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRKLLHSIETGHSANVFCTK 100
               L GH+  + +I+++  G LL+SGS D  I +W   +  KL+ S+E  H ++V    
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 101 F-VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
              P+ +  L+ S + D  V+L++LS                  + H+  V  LA     
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLS---------TPGKLIRTLEGHSESVTSLAFSPDG 167

Query: 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219
             +   +S DGT++  D R G                          +LA       SL 
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPL----------------------STLAGHTDPVSSL- 204

Query: 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM--------- 270
               S     L+  G SD   RL+D      L S     S    V+ F P          
Sbjct: 205 --AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS-DSVVSSFSPDGSLLASGSS 261

Query: 271 --------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316
                          L      S  +  V FSP+G+ +    S   V L D+      + 
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321

Query: 317 RYTVGDASKIMSFTPTLNG 335
               G    + S + + +G
Sbjct: 322 LTLKGHEGPVSSLSFSPDG 340

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 614 DMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVN 673
           ++ +   GH     D+  ++     G Y+ASGS D    +W+ +TG  ++ L G  + V+
Sbjct: 42  ELLRTLKGHTGPVRDVAASAD----GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97

Query: 674 CVQCHPFDCVVATSGIDNTIKIW 696
            V   P   ++++S  D TIK+W
Sbjct: 98  SVAFSPDGRILSSSSRDKTIKVW 120

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           +   GH +    +   +F    G  ++S S D    +W+ +TG+ +  L G    VN V 
Sbjct: 87  RTLTGHTS---YVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142

Query: 677 CHPFDCVVATSGIDNTIKIW 696
             P    VA+S  D TIK+W
Sbjct: 143 FSPDGTFVASSSQDGTIKLW 162

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G  +A+GS DG   +W+ +TG L++ L G    V  V        +A+   D TI++W
Sbjct: 21  GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 45  ELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
            L GH    V++ S +  GSLL SGS D  I +W   S   L    +GHS++V    F P
Sbjct: 237 TLSGHSDSVVSSFSPD--GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
               +L+ SG+ D  VRL++L            +  S   + H   V  L+       +V
Sbjct: 295 --DGKLLASGSSDGTVRLWDLE--------TGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344

Query: 164 WSASEDGTLRQHDFRQGSS 182
              S+DGT+R  D R G  
Sbjct: 345 SGGSDDGTIRLWDLRTGKP 363

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 44/157 (28%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCT 99
           S  R L GH   V +++++  G LL SGS D  + +W   + KLL S+   GH   V   
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334

Query: 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
            F P+ S  LV  G+ D  +RL++L             T   L                +
Sbjct: 335 SFSPDGSL-LVSGGSDDGTIRLWDLR------------TGKPLKTLEGHSNVLSVSFSPD 381

Query: 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196
             VV S S DGT+R  D   GS             ++
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL 418

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.3 bits (134), Expect = 3e-08
 Identities = 67/292 (22%), Positives = 101/292 (34%), Gaps = 58/292 (19%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           R LEGH   V +++++  G LL SGS  D  I +W   + K L ++  GH+  V    F 
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFS 207

Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+    L+ SG+ D  +RL++LS               +    H+  V       G+   
Sbjct: 208 PD-GGLLIASGSSDGTIRLWDLS---------TGKLLRSTLSGHSDSVVSSFSPDGSLLA 257

Query: 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222
             S S DGT+R  D R  SS     S H                          S+ S  
Sbjct: 258 --SGSSDGTIRLWDLRSSSSLLRTLSGHSS------------------------SVLSVA 291

Query: 223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282
            S     LL  G SD   RL+D                         + L  H      +
Sbjct: 292 FSPD-GKLLASGSSDGTVRLWDLETGKL----------------LSSLTLKGHEGP---V 331

Query: 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334
           + ++FSP+G  ++   S +    +     G              +SF+P   
Sbjct: 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGR 383

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 628 DIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATS 687
            +   +F    G ++AS S DG   +W+ +TG+ +  L G    VN V   P    + +S
Sbjct: 137 WVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195

Query: 688 GIDNTIKIWTPSA 700
             D TIK+W  S 
Sbjct: 196 SSDGTIKLWDLST 208

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G  +ASGS+DG   +W+ +TG  ++ L G    V  +   P    +A+   D TI+IW
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
             R L+GH G V +++++  G+LL SGSDD  + VW 
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSAN 95
           +R       L GH   V++++++  G LLI SGS D  I +W  S+ KLL S  +GHS +
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           V  + F P     L+ SG+ D  +RL++L   S         +       H+  V  +A 
Sbjct: 245 V-VSSFSP--DGSLLASGSSDGTIRLWDLRSSS---------SLLRTLSGHSSSVLSVAF 292

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSS 182
              +  ++ S S DGT+R  D   G  
Sbjct: 293 S-PDGKLLASGSSDGTVRLWDLETGKL 318

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
             + L+GH G V +++++  G  L SGSDD  I +W 
Sbjct: 3  ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 16/137 (11%)

Query: 38  RRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
            +L     L+GH+G V+++S++  GS L+  GSDD  I +W   + K L ++E     NV
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS--NV 373

Query: 97  FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
               F P+    +V SG+ D  VRL++LS  S     D           HT RV  L   
Sbjct: 374 LSVSFSPDG--RVVSSGSTDGTVRLWDLSTGSLLRNLD----------GHTSRVTSLDFS 421

Query: 157 VGNPHVVWSASEDGTLR 173
                +  S S D T+R
Sbjct: 422 PDGKSLA-SGSSDNTIR 437

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 658 TGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           +G L+K L G    V  V   P    +A+   D TIK+W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 642 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           + S S DG   +W+  TG+ +  L G E  VN V   P   ++A+   D TI++W
Sbjct: 192 LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 639 GDYIASGSDDGRWFIWE-KQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G  +ASGS DG   +W+ + +  L++ L G  + V  V   P   ++A+   D T+++W
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G+L++ L G    V  V   P   ++A+   D T+++W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.2 bits (100), Expect = 5e-04
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKML--LGDEAVVNCVQCHPFDCVVATSG-IDNTIKI 695
           G  +ASGS DG   +W+ +TG+L+  L   G E  V+ +   P   ++ + G  D TI++
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 696 W 696
           W
Sbjct: 356 W 356

Length = 466

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 405 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFA 464
           +     AA   K       + A+ D   A  +D  + +A+  +  A  +L KY+EAL+  
Sbjct: 35  DAYYNLAAAYYK---LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91

Query: 465 IAAQCLDPS 473
             A  LDP+
Sbjct: 92  EKALELDPN 100

Length = 100

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
           + L GH   V +++W+  G  L SGS D  I +W 
Sbjct: 255 QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 0.004
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 618 RYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQC 677
              GH      +   SF       ++ GSDDG   +W+ +TG+ +K L G   V   V  
Sbjct: 323 TLKGHEGP---VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSF 378

Query: 678 HPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT 715
            P   VV++   D T+++W  S         G     T
Sbjct: 379 SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT 416

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 0.004
 Identities = 21/80 (26%), Positives = 37/80 (46%)

Query: 628 DIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATS 687
            +   +F    G  IASGS DG   +W+  TG+L++  L   +        P   ++A+ 
Sbjct: 200 PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASG 259

Query: 688 GIDNTIKIWTPSASVPSIVS 707
             D TI++W   +S   + +
Sbjct: 260 SSDGTIRLWDLRSSSSLLRT 279

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	737
KOG1310	758	consensus WD40 repeat protein [General function pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG1334	559	consensus WD40 repeat protein [General function pr	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
PTZ00421	493	coronin; Provisional	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG4227	609	consensus WD40 repeat protein [General function pr	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.89
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.89
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.89
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.89
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.87
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
KOG0641	350	consensus WD40 repeat protein [General function pr	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.86
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.84
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG0267	825	consensus Microtubule severing protein katanin p80	99.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.82
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG2096	420	consensus WD40 repeat protein [General function pr	99.78
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.77
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.77
KOG0639	705	consensus Transducin-like enhancer of split protei	99.76
KOG1273	405	consensus WD40 repeat protein [General function pr	99.76
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.76
KOG1274	933	consensus WD40 repeat protein [General function pr	99.76
KOG2048	691	consensus WD40 repeat protein [General function pr	99.76
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.75
KOG4328	498	consensus WD40 protein [Function unknown]	99.75
KOG1963	792	consensus WD40 repeat protein [General function pr	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.7
KOG2055	514	consensus WD40 repeat protein [General function pr	99.7
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.7
KOG1188	376	consensus WD40 repeat protein [General function pr	99.7
COG2319	466	FOG: WD40 repeat [General function prediction only	99.7
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.69
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.67
COG2319	466	FOG: WD40 repeat [General function prediction only	99.67
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.66
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.66
PRK11028	330	6-phosphogluconolactonase; Provisional	99.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.65
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.63
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.63
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.63
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.63
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.63
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.62
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.61
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.59
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.58
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.55
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.53
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.52
PRK01742	429	tolB translocation protein TolB; Provisional	99.52
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.51
KOG0649	325	consensus WD40 repeat protein [General function pr	99.5
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.49
PRK01742	429	tolB translocation protein TolB; Provisional	99.49
KOG1310	758	consensus WD40 repeat protein [General function pr	99.49
KOG4227	609	consensus WD40 repeat protein [General function pr	99.48
KOG1963	792	consensus WD40 repeat protein [General function pr	99.48
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.46
PRK11028	330	6-phosphogluconolactonase; Provisional	99.45
KOG0649	325	consensus WD40 repeat protein [General function pr	99.43
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.4
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.4
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.38
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.38
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.37
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.36
KOG1334	559	consensus WD40 repeat protein [General function pr	99.34
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.33
PRK04922	433	tolB translocation protein TolB; Provisional	99.33
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.33
PRK03629	429	tolB translocation protein TolB; Provisional	99.32
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.31
KOG2139	445	consensus WD40 repeat protein [General function pr	99.31
PRK03629	429	tolB translocation protein TolB; Provisional	99.31
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.31
PRK02889	427	tolB translocation protein TolB; Provisional	99.28
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.27
PRK05137	435	tolB translocation protein TolB; Provisional	99.27
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.26
PRK04922	433	tolB translocation protein TolB; Provisional	99.24
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.21
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.19
KOG2321	703	consensus WD40 repeat protein [General function pr	99.19
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.17
KOG2139	445	consensus WD40 repeat protein [General function pr	99.16
PRK02889	427	tolB translocation protein TolB; Provisional	99.15
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.15
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.13
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.12
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.11
KOG2321	703	consensus WD40 repeat protein [General function pr	99.1
KOG2315	566	consensus Predicted translation initiation factor	99.08
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.07
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.05
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.05
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.05
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.04
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.04
PRK04792	448	tolB translocation protein TolB; Provisional	99.04
PRK00178	430	tolB translocation protein TolB; Provisional	99.03
PRK05137	435	tolB translocation protein TolB; Provisional	99.03
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.02
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.0
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.97
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.97
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.93
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.92
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.86
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.86
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.86
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.84
PRK01029	428	tolB translocation protein TolB; Provisional	98.84
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.82
KOG4547	541	consensus WD40 repeat-containing protein [General	98.79
KOG4547	541	consensus WD40 repeat-containing protein [General	98.74
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.72
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.72
KOG2314	698	consensus Translation initiation factor 3, subunit	98.71
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.69
PRK00178	430	tolB translocation protein TolB; Provisional	98.69
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.68
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.67
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.66
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.65
PRK04792	448	tolB translocation protein TolB; Provisional	98.65
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.64
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.63
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.62
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.62
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.6
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.59
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.57
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.55
KOG2315	566	consensus Predicted translation initiation factor	98.55
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.51
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.51
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.5
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.48
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.47
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.45
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.41
KOG2695	425	consensus WD40 repeat protein [General function pr	98.37
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.33
COG4946	668	Uncharacterized protein related to the periplasmic	98.31
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.29
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.29
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.28
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.27
PRK01029	428	tolB translocation protein TolB; Provisional	98.26
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.26
PRK04043	419	tolB translocation protein TolB; Provisional	98.22
KOG2314	698	consensus Translation initiation factor 3, subunit	98.22
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.21
KOG2695	425	consensus WD40 repeat protein [General function pr	98.14
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.13
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.11
COG4946	668	Uncharacterized protein related to the periplasmic	98.08
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.07
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.07
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.06
PRK04043	419	tolB translocation protein TolB; Provisional	98.0
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.96
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.95
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.94
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.94
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.9
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.87
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.77
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.65
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.63
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.6
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.6
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.55
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.49
KOG3621	726	consensus WD40 repeat-containing protein [General	97.47
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.39
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.37
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.36
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.23
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.14
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.11
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.95
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.87
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.83
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.73
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.67
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.51
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.47
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.43
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.4
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.36
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.34
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.19
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.16
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.13
KOG3621	726	consensus WD40 repeat-containing protein [General	96.08
COG3391	381	Uncharacterized conserved protein [Function unknow	96.03
PRK02888	635	nitrous-oxide reductase; Validated	96.01
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.01
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.01
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.94
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.91
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.88
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.74
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.74
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.74
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.74
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.71
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.67
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.66
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.48
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.33
PHA02713	557	hypothetical protein; Provisional	95.01
COG3391	381	Uncharacterized conserved protein [Function unknow	94.94
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.83
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.83
PRK02888	635	nitrous-oxide reductase; Validated	94.66
KOG2444	238	consensus WD40 repeat protein [General function pr	94.32
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.29
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.06
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.71
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.62
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	93.56
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.54
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.29
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.06
KOG2395	644	consensus Protein involved in vacuole import and d	92.78
KOG0553	304	consensus TPR repeat-containing protein [General f	92.77
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	92.75
KOG2444	238	consensus WD40 repeat protein [General function pr	92.62
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.27
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.25
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.16
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.02
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.87
KOG4234	271	consensus TPR repeat-containing protein [General f	91.81
PHA02713	557	hypothetical protein; Provisional	91.71
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.64
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.43
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.31
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.1
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.06
PRK13616	591	lipoprotein LpqB; Provisional	90.85
PHA03098	534	kelch-like protein; Provisional	90.52
KOG2395	644	consensus Protein involved in vacuole import and d	90.51
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	90.35
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.12
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	89.5
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.44
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.34
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.23
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	89.13
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.11
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	88.87
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	88.82
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.31
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	87.78
PHA02790	480	Kelch-like protein; Provisional	87.73
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.94
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	86.82
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	86.59
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	86.45
PHA03098	534	kelch-like protein; Provisional	86.32
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	85.64
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	84.15
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	84.0
PRK13616	591	lipoprotein LpqB; Provisional	83.07
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	82.77
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	82.75
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	82.23
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	81.73
PHA02790	480	Kelch-like protein; Provisional	81.39
KOG2247	615	consensus WD40 repeat-containing protein [General	80.85
KOG2377	657	consensus Uncharacterized conserved protein [Funct	80.4

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.4e-62  Score=484.95  Aligned_cols=712  Identities=36%  Similarity=0.509  Sum_probs=564.6

Q ss_pred             CCCCCCCCChhhhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004685            1 MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS   80 (737)
Q Consensus         1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~   80 (737)
                      |-+..|+++.+...|..+-..+.......--..+..++++.+...|.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-
T Consensus         1 M~~vs~s~~~i~rql~~r~~~~~h~~rq~y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~   80 (758)
T KOG1310|consen    1 MSGVSLSDGNILRQLDYRDAFQLHISRQIYMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF   80 (758)
T ss_pred             CCceeccchhHhhhccccccchhhhHHHHhccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecch
Confidence            66778888887777776665554433331116778899999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC
Q 004685           81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  160 (737)
Q Consensus        81 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  160 (737)
                      ..+.++.+..+|...|.|++|.|..+..++++|..|..|+++|+....+...+.+.......+..|...|..|+-.|.++
T Consensus        81 ~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P  160 (758)
T KOG1310|consen   81 EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP  160 (758)
T ss_pred             hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC
Confidence            99999999899999999999999887789999999999999999987777777777778888999999999999999888


Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcE
Q 004685          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (737)
Q Consensus       161 ~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i  240 (737)
                      +.+.+++.||+|+-+|++...........+..+..               .........++..+|.++.+|++|+.|-..
T Consensus       161 htfwsasEDGtirQyDiREph~c~p~~~~~~~l~n---------------y~~~lielk~ltisp~rp~~laVGgsdpfa  225 (758)
T KOG1310|consen  161 HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN---------------YNPQLIELKCLTISPSRPYYLAVGGSDPFA  225 (758)
T ss_pred             ceEEEecCCcceeeecccCCccCCccccccHHHHH---------------hchhhheeeeeeecCCCCceEEecCCCchh
Confidence            99999999999999999986544322222222221               122235678999999999999999999999


Q ss_pred             EEEECC-CCCCcccccCCCCCC----CCcccccccccc-CCCCccc---ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          241 RLYDRR-MLPPLTSCQKRMSPP----PCVNYFCPMHLS-EHGRSSL---HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       241 ~iwd~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~---~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ++||.| ..++...-.....++    .|+++|++.++. ..+....   .++-+.|+|+|..|++.-....|++||+..+
T Consensus       226 rLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  226 RLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             hhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence            999954 444443333323333    489999999983 2221111   2577889999999999988889999999997


Q ss_pred             Ccceeeeec------CCCCeeeeecc----CCCCccCCCCCCCccc-ccccccccccccccchhhhHHHHhhhcccCCCC
Q 004685          312 GGRAMRYTV------GDASKIMSFTP----TLNGLELQPPIHDFLQ-TNIRVRGEVATGLGKCRMLVEIARNSLEEGKHP  380 (737)
Q Consensus       312 ~~~~~~~~~------~~~~~~~~~~p----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (737)
                      +.+...+..      +.......|..    ......+........+ .+.+.. .......++..+.+...+....+...
T Consensus       306 ~~~~~y~~~~~~~~~~~~~~~~lfT~~~~~sN~lh~~en~~~~~tP~sr~hrs-p~~a~~~~~~eL~e~ie~~~~egnd~  384 (758)
T KOG1310|consen  306 KSPTPYFLPIEDSNKKPSKPSLLFTQPLKRSNYLHWYENNFGASTPASRVHRS-PYTAAQPRFYELPENIEKFKTEGNDG  384 (758)
T ss_pred             CCceeecCcccccccCCCCcchhhccccccccccccccCCccccCCccccccC-cccccccchhhchHHHHHHHhhccch
Confidence            765544332      11122222321    1111111111111111 112222 22344555677777777777777666


Q ss_pred             ccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHH
Q 004685          381 YYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEA  460 (737)
Q Consensus       381 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (737)
                      .......+.+.......+.-+....++++|+++++.|.|++|.++|++||+.++.+++..+++|+++.++|..+.+..++
T Consensus       385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea  464 (758)
T KOG1310|consen  385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA  464 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence            55555554444444444444555789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCchhhHHHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCC
Q 004685          461 LDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED  540 (737)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (737)
                      ......++..+|...-....+..+...+..+..++..-       ....+.||.+..+++.|.+-..+...+...+...+
T Consensus       465 l~~~~alq~~~Ptd~a~~~~v~~l~rDi~aa~~~~~~e-------~~~~~~ri~t~~~~~~r~~~~~~~~~~~~~l~s~d  537 (758)
T KOG1310|consen  465 LSCHWALQMSFPTDVARQNFVLCLPRDISAALFSNPSE-------MIRAFARIDTDLSSVRRFFWIHKVLRGCLLLISSD  537 (758)
T ss_pred             hhhHHHHhhcCchhhhhhhhhhccccchHHHhccCchh-------hhhhhheeccchhhhhhhhhhhhhhhhhhhhhccc
Confidence            99999999999977666667777777776654433222       23356788999999999999999999999999999


Q ss_pred             CCcchhhhhcccCCCCCCCCcccccccccccceeeeccCCCCccccccCCCCCCCCCCCCCCCCCCCCccccccceEEEe
Q 004685          541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYV  620 (737)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (737)
                      ...+++.+.+...+....+.+...+|...+.|.+++++.++.+...--...+.....++.++|...+.+........+|.
T Consensus       538 ~~~e~e~p~d~qts~vds~~R~dd~n~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~ssl~nDe~dyq~E~sydy~~rYv  617 (758)
T KOG1310|consen  538 IYWEQEQPWDSQTSDVDSSQRLDDENGFLTLLEPPVNYENEVESSSGENIVSMYTGHSSLNNDEDDYQDEESYDYASRYV  617 (758)
T ss_pred             ccccccCCCCCCceeccccccccccccccccccCccccccccccccccccccccccccccccchhhcccchhhhHHhhhc
Confidence            99999999999999999999999899999999999999887654443333444455566788999998888889999999


Q ss_pred             eecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCC
Q 004685          621 GHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA  700 (737)
Q Consensus       621 gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~  700 (737)
                      ||++..++|+.+.|+...|.|+++||.||...||+..+|.++.++.|-...|.|+.-+|..+++||+|.|.+|+||.+..
T Consensus       618 GHCNv~TDIKeanFlGqrgeyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiDstiKIwsp~a  697 (758)
T KOG1310|consen  618 GHCNVTTDIKEANFLGQRGEYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGIDSTIKIWSPEA  697 (758)
T ss_pred             cccccccccccccccccCCCeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCccceEEecccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccCCCCCCChhhHHHHHHHHHHHhhhcccCC
Q 004685          701 SVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHS  736 (737)
Q Consensus       701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  736 (737)
                       .|.+...+..+|.+..+.+.++.|||+++|+++..
T Consensus       698 -~p~~~as~~h~pns~~iv~~~e~n~Q~~sR~~~~~  732 (758)
T KOG1310|consen  698 -TPPSGASRNHRPNSYAIVATNEMNRQQGSRDSYIT  732 (758)
T ss_pred             -CCCcccccccCCchhhhhhhhhhhhhhhccCCcch
Confidence             77778888889999999999999999999998754

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.1e-48  Score=369.40  Aligned_cols=330  Identities=20%  Similarity=0.319  Sum_probs=277.4

Q ss_pred             eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004685           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd  123 (737)
                      ..+.||.++|.|++|+|+|..||+|+.|.++|+||+.+.....+. ++|...|.|++|+||  |..|++|+.||+|++||
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPD--gk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPD--GKKIASGSKDGSIRLWD  185 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCC--cchhhccccCCeEEEec
Confidence            457899999999999999999999999999999999999999998 899999999999999  79999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC----CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      ..++..         ....+.+|...|++++|.|-    ...+|++++.||.|+|||+..+..                 
T Consensus       186 pktg~~---------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-----------------  239 (480)
T KOG0271|consen  186 PKTGQQ---------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-----------------  239 (480)
T ss_pred             CCCCCc---------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-----------------
Confidence            887543         25788999999999999873    346899999999999999987752                 


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                              +....+|+.+|+|+.|-.+  .++++|+.|++|++|+...+....++.                    ||..
T Consensus       240 --------~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lk--------------------GHah  289 (480)
T KOG0271|consen  240 --------VRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELK--------------------GHAH  289 (480)
T ss_pred             --------EEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhhc--------------------ccch
Confidence                    3344578999999999864  599999999999999998876555442                    2222


Q ss_pred             cceeEEEEc-----------CCCC-------------------------EEEEEeCCCeEEEEEcCCCCc-ceeeeecCC
Q 004685          280 LHLTHVTFS-----------PNGE-------------------------EVLLSYSGEHVYLMDVNHAGG-RAMRYTVGD  322 (737)
Q Consensus       280 ~~i~~v~~s-----------p~g~-------------------------~l~~g~~dg~v~iwd~~~~~~-~~~~~~~~~  322 (737)
                       +|+.++.+           |.++                         .|++|+.|.++++|+....+. ...+.+|..
T Consensus       290 -wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~  368 (480)
T KOG0271|consen  290 -WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA  368 (480)
T ss_pred             -heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhh
Confidence             35555544           3333                         599999999999999887663 445677888


Q ss_pred             CCeeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcc
Q 004685          323 ASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPML  402 (737)
Q Consensus       323 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  402 (737)
                      .++.+.|+|+..-++..                                                               
T Consensus       369 lVn~V~fSPd~r~IASa---------------------------------------------------------------  385 (480)
T KOG0271|consen  369 LVNHVSFSPDGRYIASA---------------------------------------------------------------  385 (480)
T ss_pred             heeeEEECCCccEEEEe---------------------------------------------------------------
Confidence            88899999974321111                                                               


Q ss_pred             hhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHH
Q 004685          403 RHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVE  482 (737)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (737)
                                                                                                      
T Consensus       386 --------------------------------------------------------------------------------  385 (480)
T KOG0271|consen  386 --------------------------------------------------------------------------------  385 (480)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCcc
Q 004685          483 NIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRD  562 (737)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (737)
                                                                                                      
T Consensus       386 --------------------------------------------------------------------------------  385 (480)
T KOG0271|consen  386 --------------------------------------------------------------------------------  385 (480)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccceeeeccCCCCccccccCCCCCCCCCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEE
Q 004685          563 VEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYI  642 (737)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l  642 (737)
                                                           +.+.-+.+|..++++.+..|.||.+.||.+.    ||.|.++|
T Consensus       386 -------------------------------------SFDkSVkLW~g~tGk~lasfRGHv~~VYqva----wsaDsRLl  424 (480)
T KOG0271|consen  386 -------------------------------------SFDKSVKLWDGRTGKFLASFRGHVAAVYQVA----WSADSRLL  424 (480)
T ss_pred             -------------------------------------ecccceeeeeCCCcchhhhhhhccceeEEEE----eccCccEE
Confidence                                                 1122233455566667779999999999988    99999999


Q ss_pred             EEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEc
Q 004685          643 ASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT  697 (737)
Q Consensus       643 ~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~  697 (737)
                      +|||.|.+++|||+++.++..-|.||.+.|.+|.|+|||..++|||.|..+|+|.
T Consensus       425 VS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  425 VSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999999999999999999999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-44  Score=347.45  Aligned_cols=355  Identities=19%  Similarity=0.228  Sum_probs=274.3

Q ss_pred             EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (737)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  163 (737)
                      +...+ .+|.++|.|++|+|+  +..|++|+.|.++++||+.+.          .|..+.++|...|.|++|+| ++..|
T Consensus       107 CssS~-~GH~e~Vl~~~fsp~--g~~l~tGsGD~TvR~WD~~Te----------Tp~~t~KgH~~WVlcvawsP-Dgk~i  172 (480)
T KOG0271|consen  107 CSSSI-AGHGEAVLSVQFSPT--GSRLVTGSGDTTVRLWDLDTE----------TPLFTCKGHKNWVLCVAWSP-DGKKI  172 (480)
T ss_pred             ecccc-CCCCCcEEEEEecCC--CceEEecCCCceEEeeccCCC----------CcceeecCCccEEEEEEECC-Ccchh
Confidence            44556 799999999999998  799999999999999999973          34889999999999999999 67999


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC----CcEEEEEeCCCc
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR----PHLLLVGGSDAF  239 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~----~~~l~t~s~Dg~  239 (737)
                      ++|+.||.|++||..+++..                        ...+++|...|++++|.|-.    .++||+++.||.
T Consensus       173 ASG~~dg~I~lwdpktg~~~------------------------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~  228 (480)
T KOG0271|consen  173 ASGSKDGSIRLWDPKTGQQI------------------------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS  228 (480)
T ss_pred             hccccCCeEEEecCCCCCcc------------------------cccccCcccceeEEeecccccCCCccceecccCCCC
Confidence            99999999999999998754                        44566789999999997642    468999999999


Q ss_pred             EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeee
Q 004685          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT  319 (737)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~  319 (737)
                      |+|||+..+..+..+                    .+|.. +|+|+.|--+| +|++|+.|++|++|+...+.....+.+
T Consensus       229 vrIWd~~~~~~~~~l--------------------sgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkG  286 (480)
T KOG0271|consen  229 VRIWDTKLGTCVRTL--------------------SGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKG  286 (480)
T ss_pred             EEEEEccCceEEEEe--------------------ccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcc
Confidence            999999876544332                    44555 69999998775 699999999999999999988889999


Q ss_pred             cCCCCeeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCC
Q 004685          320 VGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG  399 (737)
Q Consensus       320 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  399 (737)
                      |.+.++.++.+-+.     ....+.|-+.+..+..     ..+..                                   
T Consensus       287 HahwvN~lalsTdy-----~LRtgaf~~t~~~~~~-----~se~~-----------------------------------  321 (480)
T KOG0271|consen  287 HAHWVNHLALSTDY-----VLRTGAFDHTGRKPKS-----FSEEQ-----------------------------------  321 (480)
T ss_pred             cchheeeeeccchh-----hhhccccccccccCCC-----hHHHH-----------------------------------
Confidence            99999999887642     1112222221111110     00000                                   


Q ss_pred             CcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHH
Q 004685          400 PMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE  479 (737)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (737)
                                                                         ..++.+                       
T Consensus       322 ---------------------------------------------------~~Al~r-----------------------  327 (480)
T KOG0271|consen  322 ---------------------------------------------------KKALER-----------------------  327 (480)
T ss_pred             ---------------------------------------------------HHHHHH-----------------------
Confidence                                                               000000                       


Q ss_pred             HHHHHHhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCC
Q 004685          480 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDE  559 (737)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (737)
                          +..-.                                                                       
T Consensus       328 ----Y~~~~-----------------------------------------------------------------------  332 (480)
T KOG0271|consen  328 ----YEAVL-----------------------------------------------------------------------  332 (480)
T ss_pred             ----HHHhh-----------------------------------------------------------------------
Confidence                00000                                                                       


Q ss_pred             CcccccccccccceeeeccCCCCccccccCCCCCCCCCCCCCCCCCCC-Ccc-ccccceEEEeeecccccceeeeecccC
Q 004685          560 GRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPY-QPE-TVIDMKQRYVGHCNVGTDIKQASFLGQ  637 (737)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~gh~~~~~~i~~~~~~s~  637 (737)
                                                     ...+..++++++|...+ |.. ...+++.+..||...|..+.    |||
T Consensus       333 -------------------------------~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~----fSP  377 (480)
T KOG0271|consen  333 -------------------------------KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS----FSP  377 (480)
T ss_pred             -------------------------------ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEE----ECC
Confidence                                           00011122333333333 332 33447789999999999877    999


Q ss_pred             CCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCCCCCCChhh
Q 004685          638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTAD  717 (737)
Q Consensus       638 d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~~~  717 (737)
                      |++||||||-|.+|++||..+|+.+.+|+||.++|--|+||.|.++|+|||.|.++++|++++-+...-+.||.++|.  
T Consensus       378 d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf--  455 (480)
T KOG0271|consen  378 DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF--  455 (480)
T ss_pred             CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999987  


Q ss_pred             HHHHHHHHHHHh
Q 004685          718 VLEAMESNQRKL  729 (737)
Q Consensus       718 ~~~~~~~~~~~~  729 (737)
                      ..++.++.|+-.
T Consensus       456 ~vDwspDG~rV~  467 (480)
T KOG0271|consen  456 AVDWSPDGQRVA  467 (480)
T ss_pred             EEEecCCCceee
Confidence            556666655543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.6e-43  Score=342.83  Aligned_cols=211  Identities=25%  Similarity=0.312  Sum_probs=186.0

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      .+...--|-+.+|..+.|+++++.||||+.+|.++||+..+...+++| .+|...|.++.|+|..++..+++|+.||+++
T Consensus       166 ~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk  244 (459)
T KOG0272|consen  166 ELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVK  244 (459)
T ss_pred             hhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCcee
Confidence            333344467789999999999999999999999999999999999999 8999999999999984367899999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      +|++...          .++..+.+|...|..++|+| ++++|+|++.|.+-++||++++...                 
T Consensus       245 lw~~~~e----------~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~El-----------------  296 (459)
T KOG0272|consen  245 LWKLSQE----------TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSEL-----------------  296 (459)
T ss_pred             eeccCCC----------cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhh-----------------
Confidence            9999863          34788999999999999999 7799999999999999999998632                 


Q ss_pred             cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (737)
                              .-..+|...|.+++|.|+ |.++++|+.|..-||||+|++..+..+                    .+|.. 
T Consensus       297 --------L~QEGHs~~v~~iaf~~D-GSL~~tGGlD~~~RvWDlRtgr~im~L--------------------~gH~k-  346 (459)
T KOG0272|consen  297 --------LLQEGHSKGVFSIAFQPD-GSLAATGGLDSLGRVWDLRTGRCIMFL--------------------AGHIK-  346 (459)
T ss_pred             --------HhhcccccccceeEecCC-CceeeccCccchhheeecccCcEEEEe--------------------ccccc-
Confidence                    233468889999999997 689999999999999999999765444                    34554 


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .|.+|+|+|+|..|++|+.|++++|||++.
T Consensus       347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~  376 (459)
T KOG0272|consen  347 EILSVAFSPNGYHLATGSSDNTCKVWDLRM  376 (459)
T ss_pred             ceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence            699999999999999999999999999987

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.8e-39  Score=299.69  Aligned_cols=218  Identities=22%  Similarity=0.321  Sum_probs=189.1

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      ++..++|+||.+.|.+|.|++|+++|++++.||.+.|||..+...++.+ +.....|..++|+|.  ++++++|+.|+..
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sPS--g~~VAcGGLdN~C  121 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSPS--GNFVACGGLDNKC  121 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECCC--CCeEEecCcCcee
Confidence            3455899999999999999999999999999999999999998888888 678899999999999  7999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      .||++...+....    .+..+.+.+|++.+.|+.|-+ + ..|+|++-|.++.+||+++++.                 
T Consensus       122 siy~ls~~d~~g~----~~v~r~l~gHtgylScC~f~d-D-~~ilT~SGD~TCalWDie~g~~-----------------  178 (343)
T KOG0286|consen  122 SIYPLSTRDAEGN----VRVSRELAGHTGYLSCCRFLD-D-NHILTGSGDMTCALWDIETGQQ-----------------  178 (343)
T ss_pred             EEEeccccccccc----ceeeeeecCccceeEEEEEcC-C-CceEecCCCceEEEEEcccceE-----------------
Confidence            9999986432211    233567889999999999987 5 4566999999999999999873                 


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                              +..+.+|.+.|.+++++|.+++.|++|+-|+..++||+|.+.-++.|                    .+|..
T Consensus       179 --------~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF--------------------~ghes  230 (343)
T KOG0286|consen  179 --------TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF--------------------EGHES  230 (343)
T ss_pred             --------EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee--------------------ccccc
Confidence                    44556899999999999976899999999999999999987644444                    55665


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                       .|++|.|.|+|.-+++|+.|++.++||++...
T Consensus       231 -DINsv~ffP~G~afatGSDD~tcRlyDlRaD~  262 (343)
T KOG0286|consen  231 -DINSVRFFPSGDAFATGSDDATCRLYDLRADQ  262 (343)
T ss_pred             -ccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence             59999999999999999999999999999843

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.4e-38  Score=289.37  Aligned_cols=188  Identities=18%  Similarity=0.300  Sum_probs=157.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCcee
Q 004685           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  142 (737)
Q Consensus        63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~  142 (737)
                      -+|++++.|.+||+|...+|.+..++ +..++.|+.+...|+  +..|++++. -.|++||+++...        .|+.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTpd--k~~LAaa~~-qhvRlyD~~S~np--------~Pv~t   78 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITPD--KKDLAAAGN-QHVRLYDLNSNNP--------NPVAT   78 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcCC--cchhhhccC-CeeEEEEccCCCC--------CceeE
Confidence            48999999999999999999999999 666789999999999  677777764 6799999997553        46899


Q ss_pred             eccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEE
Q 004685          143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD  222 (737)
Q Consensus       143 ~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  222 (737)
                      +.+|..-|+++.|.. +++.+++|+.||+++|||++.....                          ....+..+|+++.
T Consensus        79 ~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~q--------------------------R~~~~~spVn~vv  131 (311)
T KOG0315|consen   79 FEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQ--------------------------RNYQHNSPVNTVV  131 (311)
T ss_pred             EeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccc--------------------------hhccCCCCcceEE
Confidence            999999999999998 6799999999999999999985421                          2223457899999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCe
Q 004685          223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH  302 (737)
Q Consensus       223 ~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~  302 (737)
                      .+|. ...|++|..+|.|++||++.......+             .|..       .-.|.++...|||.+++++...|.
T Consensus       132 lhpn-QteLis~dqsg~irvWDl~~~~c~~~l-------------iPe~-------~~~i~sl~v~~dgsml~a~nnkG~  190 (311)
T KOG0315|consen  132 LHPN-QTELISGDQSGNIRVWDLGENSCTHEL-------------IPED-------DTSIQSLTVMPDGSMLAAANNKGN  190 (311)
T ss_pred             ecCC-cceEEeecCCCcEEEEEccCCcccccc-------------CCCC-------CcceeeEEEcCCCcEEEEecCCcc
Confidence            9997 578999999999999999875422222             1111       125999999999999999999999


Q ss_pred             EEEEEcCC
Q 004685          303 VYLMDVNH  310 (737)
Q Consensus       303 v~iwd~~~  310 (737)
                      .++|++-.
T Consensus       191 cyvW~l~~  198 (311)
T KOG0315|consen  191 CYVWRLLN  198 (311)
T ss_pred             EEEEEccC
Confidence            99999876

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8e-39  Score=331.58  Aligned_cols=400  Identities=20%  Similarity=0.203  Sum_probs=290.8

Q ss_pred             cccccccccccccccceeecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCC
Q 004685           28 HSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~  106 (737)
                      ..+++|+  .++.+.++.++. |++||..|+|+|.+.+|++|+.|+.|+|||+..+.+.+.| .+|.+.|.++.|+|+..
T Consensus        84 ~llrv~~--L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~  160 (775)
T KOG0319|consen   84 QLLRVWS--LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWN  160 (775)
T ss_pred             ceEEEEE--cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccc
Confidence            3466666  667788999998 9999999999999999999999999999999999999999 89999999999999864


Q ss_pred             CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC--
Q 004685          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP--  184 (737)
Q Consensus       107 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~--  184 (737)
                      -.+|++|..|+++++||++...         .++..+..|.+.|++++|.++ +..+++++.|..+.+||+.+.+...  
T Consensus       161 ~~lL~sg~~D~~v~vwnl~~~~---------tcl~~~~~H~S~vtsL~~~~d-~~~~ls~~RDkvi~vwd~~~~~~l~~l  230 (775)
T KOG0319|consen  161 RWLLASGATDGTVRVWNLNDKR---------TCLHTMILHKSAVTSLAFSED-SLELLSVGRDKVIIVWDLVQYKKLKTL  230 (775)
T ss_pred             hhheeecCCCceEEEEEcccCc---------hHHHHHHhhhhheeeeeeccC-CceEEEeccCcEEEEeehhhhhhhhee
Confidence            4568999999999999999633         237888999999999999994 6778899999999999985544320  


Q ss_pred             -------------C--------CCCCCCccceEEEeccCCc---------------------------------------
Q 004685          185 -------------P--------AGSSHQECRNILLDLRCGA---------------------------------------  204 (737)
Q Consensus       185 -------------~--------~~~~~~~~~~~~~~~~~~~---------------------------------------  204 (737)
                                   .        .+.....+...+++...+.                                       
T Consensus       231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~  310 (775)
T KOG0319|consen  231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE  310 (775)
T ss_pred             chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence                         0        0000000111111110000                                       


Q ss_pred             -------------------------------------eee-------ccCCCCCccceEEEEEecCCCcEEEEEeCCCcE
Q 004685          205 -------------------------------------KRS-------LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (737)
Q Consensus       205 -------------------------------------~~~-------~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i  240 (737)
                                                           .+.       ..-.++|...|.++....+ +.+|++|+.|..+
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~-g~llat~sKD~sv  389 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS-GDLLATGSKDKSV  389 (775)
T ss_pred             cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc-CcEEEEecCCceE
Confidence                                                 000       0011456777777773333 4699999999999


Q ss_pred             EEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCcceeeee
Q 004685          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRYT  319 (737)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g-~~l~~g~~dg~v~iwd~~~~~~~~~~~~  319 (737)
                      ++|.++...              ....+....  .+|.. .|.+++++..+ .+|++++.|+++++|++...+....   
T Consensus       390 ilWr~~~~~--------------~~~~~~a~~--~gH~~-svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~---  449 (775)
T KOG0319|consen  390 ILWRLNNNC--------------SKSLCVAQA--NGHTN-SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF---  449 (775)
T ss_pred             EEEEecCCc--------------chhhhhhhh--ccccc-ccceeeecccCccEEEEecCCceEEEecCCCcccccc---
Confidence            999884322              111111122  34554 59999997654 6899999999999999987321000   


Q ss_pred             cCCCCeeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCC
Q 004685          320 VGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG  399 (737)
Q Consensus       320 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  399 (737)
                                .+.                 +                                   .+.....       
T Consensus       450 ----------~~~-----------------~-----------------------------------~~~~t~~-------  460 (775)
T KOG0319|consen  450 ----------PIV-----------------L-----------------------------------TCRYTER-------  460 (775)
T ss_pred             ----------cce-----------------e-----------------------------------hhhHHHH-------
Confidence                      000                 0                                   0000000       


Q ss_pred             CcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHH
Q 004685          400 PMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE  479 (737)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (737)
                                                                                  +++.........        
T Consensus       461 ------------------------------------------------------------aHdKdIN~Vaia--------  472 (775)
T KOG0319|consen  461 ------------------------------------------------------------AHDKDINCVAIA--------  472 (775)
T ss_pred             ------------------------------------------------------------hhcccccceEec--------
Confidence                                                                        000000000000        


Q ss_pred             HHHHHHhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCC
Q 004685          480 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDE  559 (737)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (737)
                                                                                                      
T Consensus       473 --------------------------------------------------------------------------------  472 (775)
T KOG0319|consen  473 --------------------------------------------------------------------------------  472 (775)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccccccccceeeeccCCCCccccccCCCCCCCCCC-CCCCCCCCCCccccccceEEEeeecccccceeeeecccCC
Q 004685          560 GRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSS-SSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQR  638 (737)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d  638 (737)
                                                      .+++.+. .+++....+|..........+.||+..++++.    |++.
T Consensus       473 --------------------------------~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~----Fs~~  516 (775)
T KOG0319|consen  473 --------------------------------PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS----FSKN  516 (775)
T ss_pred             --------------------------------CCCceEEecccccceeeecccCceEEEEeeCCccceEEEE----eccc
Confidence                                            1111121 13445566677777888999999999999998    9999


Q ss_pred             CCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCCCCCCC
Q 004685          639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD  714 (737)
Q Consensus       639 ~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~  714 (737)
                      ++.|||+|.|++|+||.+++..|+.+|.||+..|..+.|--+++.|+|+|.||.|+||++++.+|..++-+|+.+|
T Consensus       517 dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Drv  592 (775)
T KOG0319|consen  517 DQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRV  592 (775)
T ss_pred             cceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcccee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999886

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-37  Score=301.43  Aligned_cols=209  Identities=18%  Similarity=0.192  Sum_probs=166.9

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  117 (737)
                      +..+.|..|+..|+-+.||++|++||+++.|.+..+|++....   ..+++ .+|..+|..+.|+|+  ..+|++|+.|.
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPD--dryLlaCg~~e  291 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPD--DRYLLACGFDE  291 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCC--CCeEEecCchH
Confidence            3446688999999999999999999999999999999876443   45666 799999999999999  69999999999


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      .+.+||..++....         ..-.++...+.+++|.| ++..+++|+.|++|..||+.....-             -
T Consensus       292 ~~~lwDv~tgd~~~---------~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~-------------~  348 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRH---------LYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILG-------------N  348 (519)
T ss_pred             heeeccCCcchhhh---------hcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhh-------------c
Confidence            99999999865422         11123567899999999 5577889999999999999875411             0


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (737)
                      |.            ......|.+++..++ +.++++.+.|..|++|+..+......+                    ..+
T Consensus       349 W~------------gvr~~~v~dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~li--------------------se~  395 (519)
T KOG0293|consen  349 WE------------GVRDPKVHDLAITYD-GKYVLLVTVDKKIRLYNREARVDRGLI--------------------SEE  395 (519)
T ss_pred             cc------------ccccceeEEEEEcCC-CcEEEEEecccceeeechhhhhhhccc--------------------ccc
Confidence            00            011246889999997 578888889999999998865432211                    112


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       278 ~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +  +|++++.|.+|+++++.-.+..+++||+..
T Consensus       396 ~--~its~~iS~d~k~~LvnL~~qei~LWDl~e  426 (519)
T KOG0293|consen  396 Q--PITSFSISKDGKLALVNLQDQEIHLWDLEE  426 (519)
T ss_pred             C--ceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence            2  599999999999999999999999999885

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.1e-37  Score=308.83  Aligned_cols=248  Identities=19%  Similarity=0.294  Sum_probs=204.7

Q ss_pred             CCCCCCCChhhhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004685            2 ENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYS   80 (737)
Q Consensus         2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~   80 (737)
                      |++.|+.-+...|..+..+..+......++-.+.++ .-+.++++.||+..|+++.|.| .+.+|++|+.|+.|+||++.
T Consensus       167 e~s~~h~k~~~dyq~r~~l~~P~dv~vnlR~~rc~~-Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy  245 (503)
T KOG0282|consen  167 ESSTLHGKSLFDYQGRSYLQKPKDVGVNLREERCYL-PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY  245 (503)
T ss_pred             ccccccccchhhccccccccCCcccCCccccceeec-cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEe
Confidence            567788888888888888887776665555222222 2367889999999999999999 89999999999999999997


Q ss_pred             C-CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC
Q 004685           81 S-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN  159 (737)
Q Consensus        81 ~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  159 (737)
                      . ++++.+| .+|..+|.+++|+++  |..|++++.|+.|++||+.++..          +..+. -...++|+.|+|++
T Consensus       246 ~~~~~lrtf-~gH~k~Vrd~~~s~~--g~~fLS~sfD~~lKlwDtETG~~----------~~~f~-~~~~~~cvkf~pd~  311 (503)
T KOG0282|consen  246 DDRRCLRTF-KGHRKPVRDASFNNC--GTSFLSASFDRFLKLWDTETGQV----------LSRFH-LDKVPTCVKFHPDN  311 (503)
T ss_pred             cCcceehhh-hcchhhhhhhhcccc--CCeeeeeecceeeeeeccccceE----------EEEEe-cCCCceeeecCCCC
Confidence            6 8899999 899999999999999  79999999999999999997532          34443 34567999999988


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc
Q 004685          160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF  239 (737)
Q Consensus       160 ~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~  239 (737)
                      .+.+++|+.|+.|+.||+++++.                         +.....|-+.|..+.|-+. +..+++.+.|+.
T Consensus       312 ~n~fl~G~sd~ki~~wDiRs~kv-------------------------vqeYd~hLg~i~~i~F~~~-g~rFissSDdks  365 (503)
T KOG0282|consen  312 QNIFLVGGSDKKIRQWDIRSGKV-------------------------VQEYDRHLGAILDITFVDE-GRRFISSSDDKS  365 (503)
T ss_pred             CcEEEEecCCCcEEEEeccchHH-------------------------HHHHHhhhhheeeeEEccC-CceEeeeccCcc
Confidence            89999999999999999999873                         4445567789999999997 689999999999


Q ss_pred             EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      ++||+.+..-++..+..                    .......+|..+|++.++++-+.|+.|.+|.+..
T Consensus       366 ~riWe~~~~v~ik~i~~--------------------~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~  416 (503)
T KOG0282|consen  366 VRIWENRIPVPIKNIAD--------------------PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP  416 (503)
T ss_pred             EEEEEcCCCccchhhcc--------------------hhhccCcceecCCCCCeehhhccCceEEEEeccc
Confidence            99999987665543321                    1111378899999999999999999999998554

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-36  Score=296.64  Aligned_cols=261  Identities=19%  Similarity=0.257  Sum_probs=233.5

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC-CCcEEEEEeC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASE  168 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~  168 (737)
                      .+.+.+|..+.|+++  +..|++|+.+|.+++|...+.          ..+.++.+|...|.++.|+|. +...|+||+.
T Consensus       172 ~gd~rPis~~~fS~d--s~~laT~swsG~~kvW~~~~~----------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~  239 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRD--SKHLATGSWSGLVKVWSVPQC----------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASA  239 (459)
T ss_pred             ccCCCcceeeEeecC--CCeEEEeecCCceeEeecCCc----------ceeEEEeccccceeeEEEccCCCccceeeecc
Confidence            366789999999999  799999999999999998863          237889999999999999997 4678999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004685          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (737)
Q Consensus       169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~  248 (737)
                      ||++++|++.+..+                         +....+|...|..++|+|+ |++|+|++.|.+-++||++++
T Consensus       240 Dgtvklw~~~~e~~-------------------------l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk  293 (459)
T KOG0272|consen  240 DGTVKLWKLSQETP-------------------------LQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETK  293 (459)
T ss_pred             CCceeeeccCCCcc-------------------------hhhhhcchhhheeeeecCC-Cceeeecccccchhhcccccc
Confidence            99999999988652                         4556678889999999997 699999999999999999987


Q ss_pred             CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeee
Q 004685          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS  328 (737)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  328 (737)
                      ..+.-                    ..||+. .|.+++|+|||..+++|+.|..-+|||++++.+               
T Consensus       294 ~ElL~--------------------QEGHs~-~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~---------------  337 (459)
T KOG0272|consen  294 SELLL--------------------QEGHSK-GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC---------------  337 (459)
T ss_pred             hhhHh--------------------hccccc-ccceeEecCCCceeeccCccchhheeecccCcE---------------
Confidence            64322                    155666 599999999999999999999999999999631               


Q ss_pred             eccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhh
Q 004685          329 FTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLC  408 (737)
Q Consensus       329 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  408 (737)
                                                                                                      
T Consensus       338 --------------------------------------------------------------------------------  337 (459)
T KOG0272|consen  338 --------------------------------------------------------------------------------  337 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhh
Q 004685          409 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (737)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (737)
                                                                                                      
T Consensus       338 --------------------------------------------------------------------------------  337 (459)
T KOG0272|consen  338 --------------------------------------------------------------------------------  337 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCcccccccc
Q 004685          489 AAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL  568 (737)
Q Consensus       489 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (737)
                                                                                                      
T Consensus       338 --------------------------------------------------------------------------------  337 (459)
T KOG0272|consen  338 --------------------------------------------------------------------------------  337 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceeeeccCCCCccccccCCCCCCCCCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEEEecCC
Q 004685          569 HGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDD  648 (737)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D  648 (737)
                                                                     .-.|.||.+.|+.+.    |||+|..|||||.|
T Consensus       338 -----------------------------------------------im~L~gH~k~I~~V~----fsPNGy~lATgs~D  366 (459)
T KOG0272|consen  338 -----------------------------------------------IMFLAGHIKEILSVA----FSPNGYHLATGSSD  366 (459)
T ss_pred             -----------------------------------------------EEEecccccceeeEe----ECCCceEEeecCCC
Confidence                                                           115888999999888    99999999999999


Q ss_pred             CcEEEEEcCcccEEEEeecCCCceEEEEecC-CCCeEEEEecCCcEEEEcCCCCCCccccCCCCCCCh
Q 004685          649 GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHP-FDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT  715 (737)
Q Consensus       649 ~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp-~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~  715 (737)
                      ++++|||++-..++.++.+|+..|+.|.|+| .|.+|+|+|.|++++||...+..|+.++-||.+.|.
T Consensus       367 nt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~  434 (459)
T KOG0272|consen  367 NTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI  434 (459)
T ss_pred             CcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence            9999999999999999999999999999999 578999999999999999999999999999999886

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-35  Score=307.53  Aligned_cols=469  Identities=17%  Similarity=0.204  Sum_probs=362.3

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      +.+++.|++|+....  ....+|.||+.+|++|.|...|..||+|+.|+.|.|||+-...-...+ .+|+..|+..-|..
T Consensus        83 GYaDGsVqif~~~s~--~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~  159 (888)
T KOG0306|consen   83 GYADGSVQIFSLESE--EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLN  159 (888)
T ss_pred             EecCceEEeeccCCC--ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccC
Confidence            567899999994433  788899999999999999999999999999999999999877777778 89999999999998


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC--C
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG--S  181 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~--~  181 (737)
                      .  .+++++++.|+.|++||+.+.          .+..+.-.|...+..+++++   +.+++++.|+-+++|++...  +
T Consensus       160 ~--~~~lvS~sKDs~iK~WdL~tq----------hCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~  224 (888)
T KOG0306|consen  160 G--DSFLVSVSKDSMIKFWDLETQ----------HCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDE  224 (888)
T ss_pred             C--CeEEEEeccCceEEEEecccc----------eeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeeccccc
Confidence            6  589999999999999999962          23677778999999999976   68889999999999998110  0


Q ss_pred             ----------------------CCC------------------------------------------CCCC---------
Q 004685          182 ----------------------SCP------------------------------------------PAGS---------  188 (737)
Q Consensus       182 ----------------------~~~------------------------------------------~~~~---------  188 (737)
                                            .+.                                          ....         
T Consensus       225 ~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~  304 (888)
T KOG0306|consen  225 KETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVE  304 (888)
T ss_pred             ccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchh
Confidence                                  000                                          0000         


Q ss_pred             -------------------------CCCccceEEEeccCCcee-----------------eccCCCCCccceEEEEEecC
Q 004685          189 -------------------------SHQECRNILLDLRCGAKR-----------------SLADPPKQTLSLKSCDISST  226 (737)
Q Consensus       189 -------------------------~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~v~~i~~sp~  226 (737)
                                               ........+..+.++...                 .-....+|...|.+++++.+
T Consensus       305 ~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d  384 (888)
T KOG0306|consen  305 KSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD  384 (888)
T ss_pred             hhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC
Confidence                                     000000001001111000                 00123567888999999986


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004685          227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (737)
Q Consensus       227 ~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iw  306 (737)
                        +.++..+..+.+++|+..+.+.+.++.                      .+ .+.+..|-|.++++++|...|.+.+|
T Consensus       385 --~~~~~Sga~~SikiWn~~t~kciRTi~----------------------~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vf  439 (888)
T KOG0306|consen  385 --SILLASGAGESIKIWNRDTLKCIRTIT----------------------CG-YILASKFVPGDRYIVLGTKNGELQVF  439 (888)
T ss_pred             --ceeeeecCCCcEEEEEccCcceeEEec----------------------cc-cEEEEEecCCCceEEEeccCCceEEE
Confidence              344444557899999999887665542                      11 38889999999999999999999999


Q ss_pred             EcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhh
Q 004685          307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEA  386 (737)
Q Consensus       307 d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (737)
                      |+.+.........|...+..++..|+..+......+..+-                                        
T Consensus       440 dlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVk----------------------------------------  479 (888)
T KOG0306|consen  440 DLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVK----------------------------------------  479 (888)
T ss_pred             EeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEE----------------------------------------
Confidence            9999887777778888888888888876654443332111                                        


Q ss_pred             hhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHH
Q 004685          387 CNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIA  466 (737)
Q Consensus       387 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (737)
                                                                                                      
T Consensus       480 --------------------------------------------------------------------------------  479 (888)
T KOG0306|consen  480 --------------------------------------------------------------------------------  479 (888)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccCCCchhhHHHHHHHHhhhhhhhhhcCCCCCCCC-CCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcch
Q 004685          467 AQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGG-ARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDE  545 (737)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (737)
                                           +|+......  ....+ .+-+.+..+++.++|.+++.+.++++...+-++-+.++..+.
T Consensus       480 ---------------------fWdf~l~~~--~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyf  536 (888)
T KOG0306|consen  480 ---------------------FWDFKLVVS--VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYF  536 (888)
T ss_pred             ---------------------EEeEEEEec--cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEE
Confidence                                 111110000  00000 012335567888889999999999999999999999999999


Q ss_pred             hhhhcccCCCCCCCCcccccccccccceeeeccCCCCccccccCCCCCCCCCC--CCCCCCCCCCccccccceEEEeeec
Q 004685          546 EVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSS--SSQNDRIPYQPETVIDMKQRYVGHC  623 (737)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~gh~  623 (737)
                      -..++++.+++|..-+                        ..|.+.+.++.+.  .+.+..+.+|..+-+++.+.|.+|.
T Consensus       537 lDtlKFflsLYGHkLP------------------------V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHd  592 (888)
T KOG0306|consen  537 LDTLKFFLSLYGHKLP------------------------VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHD  592 (888)
T ss_pred             ecceeeeeeecccccc------------------------eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhccc
Confidence            9999999999998855                        3356666666654  3677789999999999999999999


Q ss_pred             ccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCC
Q 004685          624 NVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVP  703 (737)
Q Consensus       624 ~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~  703 (737)
                      +.|.++.    |-|+..+++|+|.|+.|+-||-+.-++++.|.||...|+|++.+|+|.+++|+|.|.+||+|.-..+.-
T Consensus       593 DSvm~V~----F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  593 DSVMSVQ----FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             CceeEEE----EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence            9999888    899999999999999999999999999999999999999999999999999999999999998766544


Q ss_pred             ccc
Q 004685          704 SIV  706 (737)
Q Consensus       704 ~~~  706 (737)
                      ...
T Consensus       669 ~lE  671 (888)
T KOG0306|consen  669 ILE  671 (888)
T ss_pred             eee
Confidence            443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.9e-35  Score=295.27  Aligned_cols=256  Identities=18%  Similarity=0.272  Sum_probs=204.0

Q ss_pred             cCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeC--C--CcEEEEECCCCeEEEEEcccCccc
Q 004685           20 TDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD--D--THINVWSYSSRKLLHSIETGHSAN   95 (737)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~--d--g~V~vwd~~~~~~~~~~~~~h~~~   95 (737)
                      +-.++...+++++|+..-...-+..+|+--.++|..|+|++++++|+..++  +  |.+.+||  +|..+..+ .+|...
T Consensus        73 yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei-~GhSr~  149 (603)
T KOG0318|consen   73 YIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEI-TGHSRR  149 (603)
T ss_pred             EEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCcccee-ecccee
Confidence            345677889999999777677777888888999999999999998887654  2  4455666  66778888 899999


Q ss_pred             eEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004685           96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (737)
Q Consensus        96 V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw  175 (737)
                      |+++.|-|.. +-++++|+.|++|.+|+-..          ++.-.++..|..-|.|++|+| ++.++++.+.||+|.+|
T Consensus       150 ins~~~KpsR-PfRi~T~sdDn~v~ffeGPP----------FKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iy  217 (603)
T KOG0318|consen  150 INSVDFKPSR-PFRIATGSDDNTVAFFEGPP----------FKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIY  217 (603)
T ss_pred             EeeeeccCCC-ceEEEeccCCCeEEEeeCCC----------eeeeecccccccceeeEEECC-CCCeEEEecCCccEEEE
Confidence            9999999986 77899999999999997543          344566778999999999999 57899999999999999


Q ss_pred             EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (737)
Q Consensus       176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~  255 (737)
                      |=.+++.+                      ..+.....|.+.|.+++|+|+ +..+++++.|.+++|||+.+.+.+.++.
T Consensus       218 DGktge~v----------------------g~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt~KIWdVs~~slv~t~~  274 (603)
T KOG0318|consen  218 DGKTGEKV----------------------GELEDSDAHKGSIFALSWSPD-STQFLTVSADKTIKIWDVSTNSLVSTWP  274 (603)
T ss_pred             cCCCccEE----------------------EEecCCCCccccEEEEEECCC-CceEEEecCCceEEEEEeeccceEEEee
Confidence            98888743                      234445689999999999998 5899999999999999999988777765


Q ss_pred             CCCCC-------------------CCCcccccccc----ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          256 KRMSP-------------------PPCVNYFCPMH----LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       256 ~~~~~-------------------~~~~~~~~~~~----~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      .....                   ...+..+.+..    ....||.. .|+++..+|++.+|++|+.||.|.-|+..++.
T Consensus       275 ~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~  353 (603)
T KOG0318|consen  275 MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSGSGT  353 (603)
T ss_pred             cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence            43320                   00011111111    11245665 69999999999999999999999999999976


Q ss_pred             cc
Q 004685          313 GR  314 (737)
Q Consensus       313 ~~  314 (737)
                      .-
T Consensus       354 ~~  355 (603)
T KOG0318|consen  354 SD  355 (603)
T ss_pred             cc
Confidence            43

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-36  Score=313.50  Aligned_cols=211  Identities=19%  Similarity=0.237  Sum_probs=176.8

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      -...|+++++.||+++|++++....+++|++.+++.+...+..|+.||.-++|+|.  +.++++|+.|+.+++||+....
T Consensus        61 d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~--g~LlAtggaD~~v~VWdi~~~~  138 (775)
T KOG0319|consen   61 DEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPT--GTLLATGGADGRVKVWDIKNGY  138 (775)
T ss_pred             chhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCC--CceEEeccccceEEEEEeeCCE
Confidence            45689999999999999999999999999999999999885559999999999999  6999999999999999998632


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                                +...+++|.+.|.++.|+|.- ..+|++|..|+++++||++....                        .
T Consensus       139 ----------~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t------------------------c  184 (775)
T KOG0319|consen  139 ----------CTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT------------------------C  184 (775)
T ss_pred             ----------EEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch------------------------H
Confidence                      378999999999999999842 23688999999999999997653                        1


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                      +.....|...|++++|.++ +..+++++.|..+.+||+...+....++.                      ...+.++.+
T Consensus       185 l~~~~~H~S~vtsL~~~~d-~~~~ls~~RDkvi~vwd~~~~~~l~~lp~----------------------ye~~E~vv~  241 (775)
T KOG0319|consen  185 LHTMILHKSAVTSLAFSED-SLELLSVGRDKVIIVWDLVQYKKLKTLPL----------------------YESLESVVR  241 (775)
T ss_pred             HHHHHhhhhheeeeeeccC-CceEEEeccCcEEEEeehhhhhhhheech----------------------hhheeeEEE
Confidence            4445568889999999998 58999999999999999966554433321                      113667777


Q ss_pred             cCC-----CCEEEEEeCCCeEEEEEcCCCCcceeee
Q 004685          288 SPN-----GEEVLLSYSGEHVYLMDVNHAGGRAMRY  318 (737)
Q Consensus       288 sp~-----g~~l~~g~~dg~v~iwd~~~~~~~~~~~  318 (737)
                      -++     |.++++++.+|.+++||..+++......
T Consensus       242 l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~  277 (775)
T KOG0319|consen  242 LREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQR  277 (775)
T ss_pred             echhcCCcceEEEEecCCceEEEEecccchhhhhhc
Confidence            777     7899999999999999999987554443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.4e-34  Score=270.42  Aligned_cols=209  Identities=24%  Similarity=0.322  Sum_probs=177.3

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      .++..+.||++.|+.+.|+|+|..||||+.|..|.+|++.... -..++ ++|.++|..+.|.++  ++.+++++.|.+|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d--~s~i~S~gtDk~v  114 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRD--GSHILSCGTDKTV  114 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeeeeccC--CCEEEEecCCceE
Confidence            4566788999999999999999999999999999999976543 33445 799999999999999  7999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      +.||.++++.          ...+++|..-|+++.-+..+..++.+++.||++++||+|+...+                
T Consensus       115 ~~wD~~tG~~----------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~----------------  168 (338)
T KOG0265|consen  115 RGWDAETGKR----------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI----------------  168 (338)
T ss_pred             EEEeccccee----------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh----------------
Confidence            9999997533          67889999999999876667788999999999999999977633                


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                               .. ...+.+++++.|... +..+.+|+-|+.|++||++.......+                    .||..
T Consensus       169 ---------~t-~~~kyqltAv~f~d~-s~qv~sggIdn~ikvWd~r~~d~~~~l--------------------sGh~D  217 (338)
T KOG0265|consen  169 ---------KT-FENKYQLTAVGFKDT-SDQVISGGIDNDIKVWDLRKNDGLYTL--------------------SGHAD  217 (338)
T ss_pred             ---------hc-cccceeEEEEEeccc-ccceeeccccCceeeeccccCcceEEe--------------------ecccC
Confidence                     11 122467899999986 578999999999999999876644433                    34554


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                       +|+.+..+|+|.++++-+.|.++++||++.
T Consensus       218 -tIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  218 -TITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             -ceeeEEeccCCCccccccccceEEEEEecc
Confidence             699999999999999999999999999886

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.1e-34  Score=261.01  Aligned_cols=234  Identities=15%  Similarity=0.246  Sum_probs=190.9

Q ss_pred             ccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccce
Q 004685           19 HTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANV   96 (737)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V   96 (737)
                      -+..+.+++++|++|.  ..++...++++-..+.|+.+.+.|+++.||+|+. -.||+||+.++.  .+.+| .+|...|
T Consensus        11 viLvsA~YDhTIRfWq--a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~-e~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQ--ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF-EGHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeee--hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE-eccCCce
Confidence            3567889999999999  6778899999977889999999999999999886 589999999875  57788 7999999


Q ss_pred             EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (737)
Q Consensus        97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd  176 (737)
                      +.+.|.-+  |..+++|+.||+++|||++...           .+....|..+|+++..+| +...|++|..+|.|++||
T Consensus        87 taVgF~~d--grWMyTgseDgt~kIWdlR~~~-----------~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWD  152 (311)
T KOG0315|consen   87 TAVGFQCD--GRWMYTGSEDGTVKIWDLRSLS-----------CQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWD  152 (311)
T ss_pred             EEEEEeec--CeEEEecCCCceEEEEeccCcc-----------cchhccCCCCcceEEecC-CcceEEeecCCCcEEEEE
Confidence            99999999  8999999999999999999733           233445789999999999 666777999999999999


Q ss_pred             cCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccC
Q 004685          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (737)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~  256 (737)
                      +........                        -.+.....|.++...|+ +.+++.+...|.+++|++-..+....+. 
T Consensus       153 l~~~~c~~~------------------------liPe~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~s~l~-  206 (311)
T KOG0315|consen  153 LGENSCTHE------------------------LIPEDDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTASELE-  206 (311)
T ss_pred             ccCCccccc------------------------cCCCCCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCccccce-
Confidence            998753211                        11223467899999997 6899999999999999997744332221 


Q ss_pred             CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                            ++..+       ..|.+ .|..+.+||++++|++++.|.+++||+..+
T Consensus       207 ------P~~k~-------~ah~~-~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  207 ------PVHKF-------QAHNG-HILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             ------Ehhhe-------ecccc-eEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence                  11111       22444 599999999999999999999999999776

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-34  Score=264.31  Aligned_cols=214  Identities=23%  Similarity=0.302  Sum_probs=180.4

Q ss_pred             cccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCC-----CeEEEEEcccCccceEEEEEeeCCCCCEEEEE
Q 004685           40 LSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVVSG  113 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~-----~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg  113 (737)
                      +....+|++|++.|+.++..+. .+.|++++.|.++.+|++..     |..++.+ .+|...|..+..+++  +++.+++
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~d--g~~alS~   81 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSD--GNFALSA   81 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccC--CceEEec
Confidence            4566789999999999999986 57899999999999998864     5567778 799999999999999  7999999


Q ss_pred             ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (737)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~  193 (737)
                      +.|+++++||+..+.          +.+.+.+|...|.+++|++++ ..+++|+.|++|++|+.......          
T Consensus        82 swD~~lrlWDl~~g~----------~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~----------  140 (315)
T KOG0279|consen   82 SWDGTLRLWDLATGE----------STRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKY----------  140 (315)
T ss_pred             cccceEEEEEecCCc----------EEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEE----------
Confidence            999999999999742          367889999999999999954 78889999999999998765311          


Q ss_pred             ceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccc
Q 004685          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (737)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (737)
                        .           +.. ..+...|.|+.|+|.. .-.|+.++.|+++++||+++.+....+                  
T Consensus       141 --t-----------~~~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~------------------  188 (315)
T KOG0279|consen  141 --T-----------IHE-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF------------------  188 (315)
T ss_pred             --E-----------Eec-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc------------------
Confidence              1           111 1126789999999974 458999999999999999988765554                  


Q ss_pred             cCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       273 ~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                        .||.+ .++.+++||||..+++|+.||.+++||++.++
T Consensus       189 --~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k  225 (315)
T KOG0279|consen  189 --IGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK  225 (315)
T ss_pred             --ccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence              33554 49999999999999999999999999999854

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.5e-35  Score=285.89  Aligned_cols=199  Identities=24%  Similarity=0.402  Sum_probs=168.0

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      +.+|..+.|.|+|+.|++|+..|.+.+|+...-.. ..+.+.|+.+|.++.|+++  +.+++||..+|.|++|+.+..  
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-EtilQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnmn--  170 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-ETILQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNMN--  170 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeH-HHHhhhhcccceeEEEccC--CCEEEEcCCCceEEecccchh--
Confidence            35899999999999999999999999999744322 2334789999999999999  799999999999999998852  


Q ss_pred             CCCCCCCCCCceeeccCC-CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          130 RGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                               .+..+..|. ..|++++|+| +...|++|+.||+|+|||....+...                        
T Consensus       171 ---------nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~------------------------  216 (464)
T KOG0284|consen  171 ---------NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEER------------------------  216 (464)
T ss_pred             ---------hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhh------------------------
Confidence                     255556555 8999999999 55778899999999999998876321                        


Q ss_pred             cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (737)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s  288 (737)
                       ...+|.-.|.+++|+|.. .++++++.|..|++||.++++.+.++                    ++|.. .|..+.|+
T Consensus       217 -vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tl--------------------h~HKn-tVl~~~f~  273 (464)
T KOG0284|consen  217 -VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATL--------------------HGHKN-TVLAVKFN  273 (464)
T ss_pred             -eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhh--------------------hhccc-eEEEEEEc
Confidence             113567789999999985 69999999999999999998766554                    44555 69999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCC
Q 004685          289 PNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       289 p~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      |++++|++++.|..+++||+++
T Consensus       274 ~n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  274 PNGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             CCCCeeEEccCCceEEEEehhH
Confidence            9999999999999999999886

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.4e-34  Score=272.50  Aligned_cols=217  Identities=16%  Similarity=0.272  Sum_probs=184.0

Q ss_pred             ccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE
Q 004685           35 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (737)
Q Consensus        35 ~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs  114 (737)
                      .-+.++.....+.||..+|+.+-|+|+-.++++++.|++|++||..++++...+ ++|...+.+++|+..  |.++++++
T Consensus        93 ~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~--Gk~l~tcS  169 (406)
T KOG0295|consen   93 LWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDAS--GKYLATCS  169 (406)
T ss_pred             hcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecC--ccEEEecC
Confidence            345666677788899999999999999999999999999999999999998888 899999999999998  79999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                      .|-.+++||....         ++++..+.+|...|.++.|-| .+.++++++.|.+|+.|++.++.             
T Consensus       170 sDl~~~LWd~~~~---------~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~-------------  226 (406)
T KOG0295|consen  170 SDLSAKLWDFDTF---------FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGY-------------  226 (406)
T ss_pred             CccchhheeHHHH---------HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccce-------------
Confidence            9999999999852         234678889999999999999 55899999999999999999986             


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (737)
                                  .+..+++|...|..+..+.+ +.++|+++.|.++++|-+.+++-...+                    
T Consensus       227 ------------cv~t~~~h~ewvr~v~v~~D-Gti~As~s~dqtl~vW~~~t~~~k~~l--------------------  273 (406)
T KOG0295|consen  227 ------------CVKTFPGHSEWVRMVRVNQD-GTIIASCSNDQTLRVWVVATKQCKAEL--------------------  273 (406)
T ss_pred             ------------eEEeccCchHhEEEEEecCC-eeEEEecCCCceEEEEEeccchhhhhh--------------------
Confidence                        35556678889999999987 699999999999999999887432222                    


Q ss_pred             CCCcccceeEEEEcCC---------------CCEEEEEeCCCeEEEEEcCCC
Q 004685          275 HGRSSLHLTHVTFSPN---------------GEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       275 ~~~~~~~i~~v~~sp~---------------g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ..|.- +|.+++|-|.               ++++++++.|++|++||+.++
T Consensus       274 R~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg  324 (406)
T KOG0295|consen  274 REHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG  324 (406)
T ss_pred             hcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence            11222 4777887763               258999999999999999885

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.2e-32  Score=273.44  Aligned_cols=280  Identities=16%  Similarity=0.210  Sum_probs=211.9

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc--ccCccceEEEEE
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTKF  101 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~--~~h~~~V~~v~~  101 (737)
                      .+.+..+.+++  -..+|...+++.|..-|+|+.|+|||+++||++.||+|.+||=.+++.+..+.  .+|++.|.+++|
T Consensus       166 ~sdDn~v~ffe--GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW  243 (603)
T KOG0318|consen  166 GSDDNTVAFFE--GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW  243 (603)
T ss_pred             ccCCCeEEEee--CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE
Confidence            56678888887  66778888999999999999999999999999999999999999999999882  289999999999


Q ss_pred             eeCCCCCEEEEEECCCcEEEEecCCCCCCC---------------------------------CCCCCCCCceeeccCCC
Q 004685          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRG---------------------------------LDDNAITPSALYQCHTR  148 (737)
Q Consensus       102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~---------------------------------~~~~~~~~~~~~~~h~~  148 (737)
                      +||  +..|++++.|.+++|||+.......                                 .+.....++..+.+|..
T Consensus       244 sPD--s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK  321 (603)
T KOG0318|consen  244 SPD--STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK  321 (603)
T ss_pred             CCC--CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc
Confidence            999  6999999999999999998632110                                 01222346778899999


Q ss_pred             ceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCC
Q 004685          149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP  228 (737)
Q Consensus       149 ~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  228 (737)
                      .|+++..+| ++.+|++|+.||.|.-||...+..-                        ......|...|.+++-+..  
T Consensus       322 ~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~------------------------~~~g~~h~nqI~~~~~~~~--  374 (603)
T KOG0318|consen  322 SITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSD------------------------RLAGKGHTNQIKGMAASES--  374 (603)
T ss_pred             ceeEEEEcC-CCCEEEeeccCceEEEEecCCcccc------------------------ccccccccceEEEEeecCC--
Confidence            999999999 4589999999999999999988633                        1122357778888888763  


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCcccc--cCCCCCCCCcccccc---------cc---cc-----CCCCcccceeEEEEcC
Q 004685          229 HLLLVGGSDAFARLYDRRMLPPLTSC--QKRMSPPPCVNYFCP---------MH---LS-----EHGRSSLHLTHVTFSP  289 (737)
Q Consensus       229 ~~l~t~s~Dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~---~~-----~~~~~~~~i~~v~~sp  289 (737)
                      ..+++++.|.++++.++.....-...  .....| .++.....         .+   +.     ..-.-.+...+++++|
T Consensus       375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP-~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~  453 (603)
T KOG0318|consen  375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP-KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP  453 (603)
T ss_pred             CcEEEEecCCeEEEEecccCcccccceeecCCCc-eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence            47888999999999988533211111  111111 11111000         00   00     0112233578899999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCC--cceeeeecCCCCeeeeeccCCCC
Q 004685          290 NGEEVLLSYSGEHVYLMDVNHAG--GRAMRYTVGDASKIMSFTPTLNG  335 (737)
Q Consensus       290 ~g~~l~~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~p~~~~  335 (737)
                      ++.++++|+.|++|++|.+....  .......+..+++.++|+|++.-
T Consensus       454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y  501 (603)
T KOG0318|consen  454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY  501 (603)
T ss_pred             CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence            99999999999999999998855  33456678889999999998643

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2e-34  Score=302.65  Aligned_cols=197  Identities=20%  Similarity=0.251  Sum_probs=151.8

Q ss_pred             ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw  122 (737)
                      ..++..-...++|..|++|+.+||.|-.|-.|++|.+...+ ++.+ + +..      +.+     .+=+.+.|-.+.+.
T Consensus       371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~l-k-~~~------~l~-----~~d~~sad~~~~~~  436 (707)
T KOG0263|consen  371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKL-K-DAS------DLS-----NIDTESADVDVDML  436 (707)
T ss_pred             EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccc-c-chh------hhc-----cccccccchhhhhc
Confidence            34454445689999999999999999999999999998653 2233 1 111      111     12233444445555


Q ss_pred             ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                      |.....          ....+.+|.++|....|+| +.++|++|+.|+++++|.+.+....                   
T Consensus       437 D~~~~~----------~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~-------------------  486 (707)
T KOG0263|consen  437 DDDSSG----------TSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCL-------------------  486 (707)
T ss_pred             cccCCc----------eeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeE-------------------
Confidence            555321          1466889999999999999 5589999999999999999987632                   


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  282 (737)
                            ....+|..+|+.+.|+|. |.+||+++.|++.++|.....++.+.+.                    +|-. .|
T Consensus       487 ------V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRifa--------------------ghls-DV  538 (707)
T KOG0263|consen  487 ------VIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIFA--------------------GHLS-DV  538 (707)
T ss_pred             ------EEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhhhc--------------------cccc-cc
Confidence                  233478889999999997 7999999999999999998877666552                    3333 59


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          283 THVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       283 ~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .|+.|+|+..|+++|+.|.+|++||+.++
T Consensus       539 ~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G  567 (707)
T KOG0263|consen  539 DCVSFHPNSNYVATGSSDRTVRLWDVSTG  567 (707)
T ss_pred             ceEEECCcccccccCCCCceEEEEEcCCC
Confidence            99999999999999999999999999885

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.2e-33  Score=249.66  Aligned_cols=207  Identities=22%  Similarity=0.321  Sum_probs=178.1

Q ss_pred             cceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEE
Q 004685           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (737)
Q Consensus        42 ~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~i  121 (737)
                      ..+.|..|+++|.++.|+-+|++.++|+.|.+|++|+...+.+++++ .+|...|..++.+.+  ...|++|+.|..|.+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~D--nskf~s~GgDk~v~v   85 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSD--NSKFASCGGDKAVQV   85 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeecccccc--ccccccCCCCceEEE
Confidence            45678899999999999999999999999999999999999999999 899999999999999  589999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004685          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~  201 (737)
                      ||+.++.          ..+.+.+|...|+.++|+. ....+++|+.|.++++||-+.....                  
T Consensus        86 wDV~TGk----------v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~e------------------  136 (307)
T KOG0316|consen   86 WDVNTGK----------VDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFE------------------  136 (307)
T ss_pred             EEcccCe----------eeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCC------------------
Confidence            9999743          2788999999999999998 6689999999999999999887532                  


Q ss_pred             CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc
Q 004685          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (737)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (737)
                           ++..+......|.++..+.   ..+++|+.||++|.||+|.++...-.                       -+.+
T Consensus       137 -----PiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy-----------------------~g~p  185 (307)
T KOG0316|consen  137 -----PIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDY-----------------------FGHP  185 (307)
T ss_pred             -----ccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhh-----------------------cCCc
Confidence                 1222233456778887764   58999999999999999988743222                       1226


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       282 i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      |++++|+++++..++++.|+++++.|-.++
T Consensus       186 it~vs~s~d~nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  186 ITSVSFSKDGNCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             ceeEEecCCCCEEEEeeccceeeecccchh
Confidence            999999999999999999999999987774

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.2e-32  Score=296.72  Aligned_cols=212  Identities=26%  Similarity=0.413  Sum_probs=179.6

Q ss_pred             ceeeccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           43 ERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        43 ~~~l~~H-~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      ...+.+| ...|.++.|+++|++|++++.|+.+++|+..+.+  ....+ .+|...|.+++|+|+  +.++++++.|++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d--~~~l~s~s~D~ti  227 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD--GSYLLSGSDDKTL  227 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC--CcEEEEecCCceE
Confidence            4455555 7899999999999999999999999999998777  66666 789999999999999  7899999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      +|||+... +        ..+.++.+|...|++++|+|.+ +++++|+.|++|++||+++++.                 
T Consensus       228 riwd~~~~-~--------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~-----------------  280 (456)
T KOG0266|consen  228 RIWDLKDD-G--------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC-----------------  280 (456)
T ss_pred             EEeeccCC-C--------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE-----------------
Confidence            99999431 1        2378899999999999999966 9999999999999999999753                 


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC--cccccCCCCCCCCccccccccccCCCC
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (737)
                              +.....|...|.+++|+++ ++.|++++.|+.|++||+.++..  ...+..                  ...
T Consensus       281 --------~~~l~~hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~------------------~~~  333 (456)
T KOG0266|consen  281 --------VRKLKGHSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKLCLKLLSG------------------AEN  333 (456)
T ss_pred             --------EEeeeccCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCceeeeecccC------------------CCC
Confidence                    3344568889999999997 68999999999999999998873  222211                  112


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       278 ~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      .. ++++++|+|++.++++++.|+.+++||+..+.
T Consensus       334 ~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~  367 (456)
T KOG0266|consen  334 SA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK  367 (456)
T ss_pred             CC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence            22 58999999999999999999999999999853

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.8e-32  Score=249.47  Aligned_cols=219  Identities=21%  Similarity=0.295  Sum_probs=180.1

Q ss_pred             cccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCC---CeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685           40 LSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  115 (737)
                      +-.++++++|++.|..++|+|- |..||||+.|+.|+||+...   -.+...+..+|+..|.+++|+|.  |++|++++.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aSF   81 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASASF   81 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEeec
Confidence            4456789999999999999997 88999999999999999884   44555666789999999999999  799999999


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      |.++.||.-...+        ++++..+.+|...|.|++|++ ++++||+|+.|++|-+|.+.....        .+   
T Consensus        82 D~t~~Iw~k~~~e--------fecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddE--------fe---  141 (312)
T KOG0645|consen   82 DATVVIWKKEDGE--------FECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDE--------FE---  141 (312)
T ss_pred             cceEEEeecCCCc--------eeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCc--------EE---
Confidence            9999999766432        566899999999999999999 779999999999999999986542        12   


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                                 .+.-...|...|..+.|+|. ..+|++++.|.+|++|+-.....-          .|...     +  .
T Consensus       142 -----------c~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW----------~c~~t-----l--~  192 (312)
T KOG0645|consen  142 -----------CIAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDW----------ECVQT-----L--D  192 (312)
T ss_pred             -----------EEeeeccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCCe----------eEEEE-----e--c
Confidence                       23334567888999999997 479999999999999987632110          11111     1  3


Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +|.. .|.+++|+|.|..|++++.|++|+||-..+
T Consensus       193 g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~  226 (312)
T KOG0645|consen  193 GHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT  226 (312)
T ss_pred             Cccc-eEEEEEecCCCceEEEecCCcceEeeeecc
Confidence            3444 699999999999999999999999997553

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.7e-32  Score=259.94  Aligned_cols=212  Identities=16%  Similarity=0.235  Sum_probs=179.7

Q ss_pred             cceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEE
Q 004685           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (737)
Q Consensus        42 ~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~i  121 (737)
                      ...+|..|++.|.+++.+|+.+++|||+.|..-.||++.++.....+ .+|+..|+++.|+.+  |.+|++|..+|.|+|
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fshd--gtlLATGdmsG~v~v  132 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHD--GTLLATGDMSGKVLV  132 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccC--ceEEEecCCCccEEE
Confidence            45788999999999999999999999999999999999999988888 899999999999999  799999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004685          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~  201 (737)
                      |...++..          ...+..--..+.=+.|+| ...+|+.|+.||.+-+|.+.+...                   
T Consensus       133 ~~~stg~~----------~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~-------------------  182 (399)
T KOG0296|consen  133 FKVSTGGE----------QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQAL-------------------  182 (399)
T ss_pred             EEcccCce----------EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcce-------------------
Confidence            99987543          233333445677789999 678999999999999999987531                   


Q ss_pred             CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc
Q 004685          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (737)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (737)
                            ...+.+|...+++=.|.|+ ++.++++..||+|++||+.+++++..+...                    ....
T Consensus       183 ------~kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~--------------------e~~~  235 (399)
T KOG0296|consen  183 ------CKVMSGHNSPCTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQA--------------------EGLE  235 (399)
T ss_pred             ------eeEecCCCCCcccccccCC-CceEEEEecCceEEEEecCCCceeEEeccc--------------------ccCc
Confidence                  2334467888999999998 799999999999999999999877665321                    1224


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 004685          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (737)
Q Consensus       282 i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~  313 (737)
                      .+++.++..+..++.|+.++.+++-+..+++.
T Consensus       236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKV  267 (399)
T KOG0296|consen  236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGKV  267 (399)
T ss_pred             CCccccccccceeEeccCCccEEEEccccceE
Confidence            67889999999999999999999999888763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.7e-31  Score=272.41  Aligned_cols=207  Identities=27%  Similarity=0.418  Sum_probs=172.6

Q ss_pred             ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw  122 (737)
                      ..+|++|.++|++++|+|++++|++++.||.|++|++.+++....+ ..|...+..+.|+|+  +.++++++.||.|++|
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~   78 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASAD--GTYLASGSSDKTIRLW   78 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCC--CCEEEEEcCCCeEEEE
Confidence            3567899999999999999999999999999999999988877777 789999999999999  6899999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                      ++....          ....+..|...+.++.|+++ +.++++++.|+.|.+||+++.+..                   
T Consensus        79 ~~~~~~----------~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~-------------------  128 (289)
T cd00200          79 DLETGE----------CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCL-------------------  128 (289)
T ss_pred             EcCccc----------ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEE-------------------
Confidence            998532          25667788889999999994 678888888999999999865421                   


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  282 (737)
                            .....|...+.+++|+|+ +.++++++.|+.|++||++..+.+..+.                    .+.. .+
T Consensus       129 ------~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~--------------------~~~~-~i  180 (289)
T cd00200         129 ------TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLT--------------------GHTG-EV  180 (289)
T ss_pred             ------EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeEe--------------------cCcc-cc
Confidence                  111245668999999997 5788888889999999998766544332                    1222 59


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          283 THVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       283 ~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .+++|+|+++.+++++.++.|++||+.+
T Consensus       181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         181 NSVAFSPDGEKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             ceEEECCCcCEEEEecCCCcEEEEECCC
Confidence            9999999999999999999999999876

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.8e-32  Score=258.56  Aligned_cols=210  Identities=20%  Similarity=0.287  Sum_probs=183.1

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      .+..+.+.||.+-|.|+++.|..++++||+.|++|+|||+.+|++..++ .+|...|..+++++.  -.++++++.|+.|
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~r--HpYlFs~gedk~V  217 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKR--HPYLFSAGEDKQV  217 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeeccc--CceEEEecCCCee
Confidence            3556678899999999999999999999999999999999999999999 899999999999999  4899999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      +.||+...          +.++.+.+|-+.|.|++.+| .-..|++|+.|.++++||+++..                  
T Consensus       218 KCwDLe~n----------kvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~------------------  268 (460)
T KOG0285|consen  218 KCWDLEYN----------KVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRA------------------  268 (460)
T ss_pred             EEEechhh----------hhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccc------------------
Confidence            99999863          34778889999999999999 45889999999999999999875                  


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                             .+..+.+|...|..+.+.|.++ .+++|+.|++|++||++.++....+.                     |+.
T Consensus       269 -------~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agkt~~tlt---------------------~hk  319 (460)
T KOG0285|consen  269 -------SVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGKTMITLT---------------------HHK  319 (460)
T ss_pred             -------eEEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCceeEeee---------------------ccc
Confidence                   2445567899999999999865 78999999999999999887554432                     334


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ..+.+++.+|....+++++.| .|+.|++..+
T Consensus       320 ksvral~lhP~e~~fASas~d-nik~w~~p~g  350 (460)
T KOG0285|consen  320 KSVRALCLHPKENLFASASPD-NIKQWKLPEG  350 (460)
T ss_pred             ceeeEEecCCchhhhhccCCc-cceeccCCcc
Confidence            469999999999888888887 7788877764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.9e-31  Score=263.53  Aligned_cols=228  Identities=16%  Similarity=0.213  Sum_probs=181.8

Q ss_pred             eeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC--eEEE--EEc---------ccCccceEEEEEeeCCCCCE
Q 004685           44 RELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR--KLLH--SIE---------TGHSANVFCTKFVPETSDEL  109 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~--~~~~--~~~---------~~h~~~V~~v~~sp~~~~~~  109 (737)
                      +.++ |+.+|.+.+|+|-.. +|++|+.|-..++|++...  ....  .+.         ......|++++|+.+  |++
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~--G~~  249 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND--GTL  249 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC--CCe
Confidence            3344 999999999999655 8999999999999998741  1111  010         112467999999999  899


Q ss_pred             EEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCC
Q 004685          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (737)
Q Consensus       110 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~  189 (737)
                      |++|+.||.++||+..-           ....++..|.++|.++.|+. .+.+|++++.|+++.+||..++...      
T Consensus       250 LatG~~~G~~riw~~~G-----------~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~------  311 (524)
T KOG0273|consen  250 LATGSEDGEARIWNKDG-----------NLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVK------  311 (524)
T ss_pred             EEEeecCcEEEEEecCc-----------hhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEE------
Confidence            99999999999999874           22678889999999999998 6689999999999999999877521      


Q ss_pred             CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccc
Q 004685          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (737)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (737)
                                         ..+..|..+...+.|-.+  ..|++++.|+.|+++-+....|+.++               
T Consensus       312 -------------------q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~---------------  355 (524)
T KOG0273|consen  312 -------------------QQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTF---------------  355 (524)
T ss_pred             -------------------EeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceee---------------
Confidence                               111223344456777764  68999999999999999887766655               


Q ss_pred             ccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCC
Q 004685          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (737)
Q Consensus       270 ~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~  334 (737)
                           .+|++ .|.++.|.|.|.+|++++.|++++||+.........+..|...+..+.|+|+..
T Consensus       356 -----~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~  414 (524)
T KOG0273|consen  356 -----IGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP  414 (524)
T ss_pred             -----ecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence                 33555 699999999999999999999999999988887777888888888888888643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9e-31  Score=305.72  Aligned_cols=204  Identities=19%  Similarity=0.286  Sum_probs=162.2

Q ss_pred             ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----e----EEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----K----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (737)
Q Consensus        46 l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~----~----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  117 (737)
                      +.+|.+.|.+++|+|+|++||+|+.|+.|+|||+...    .    ....+  .+...|.+++|+|.. +.+|++++.||
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~-~~~las~~~Dg  555 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYI-KSQVASSNFEG  555 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCC-CCEEEEEeCCC
Confidence            4569999999999999999999999999999997542    1    12223  345689999999864 68999999999


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      +|++||+...          +.+..+.+|...|++++|+|.++.+|++|+.|+.|++||++++...           .  
T Consensus       556 ~v~lWd~~~~----------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~-----------~--  612 (793)
T PLN00181        556 VVQVWDVARS----------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI-----------G--  612 (793)
T ss_pred             eEEEEECCCC----------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE-----------E--
Confidence            9999999853          2256778999999999999867789999999999999999876522           0  


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccccccCCC
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (737)
                               .+   . +...+.++.|++.++.+|++|+.|+.|++||++..+ ++..+                    .+
T Consensus       613 ---------~~---~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~--------------------~~  659 (793)
T PLN00181        613 ---------TI---K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM--------------------IG  659 (793)
T ss_pred             ---------EE---e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe--------------------cC
Confidence                     01   0 123578899977667899999999999999998654 11111                    22


Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      |.. .|.++.|. ++.+|++++.|+.|++||+..
T Consensus       660 h~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        660 HSK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             CCC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence            333 59999997 788999999999999999875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.8e-31  Score=254.86  Aligned_cols=263  Identities=18%  Similarity=0.236  Sum_probs=189.0

Q ss_pred             CChhhhhhhccccCCCCCcccccccccccccccccceeec--ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004685            8 DGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELE--GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL   85 (737)
Q Consensus         8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~   85 (737)
                      ..++..+|....+.....    |.+..  ++...+.+.+.  -|.+-|.++...  +++|++|+.||.++|||.. |+.+
T Consensus        67 RtsL~e~l~~kgiSsE~~----leIEY--v~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~  137 (423)
T KOG0313|consen   67 RTSLDEHLEEKGISSEEI----LEIEY--VEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSI  137 (423)
T ss_pred             eccHHHHHHHcCcChhhe----eEEEE--EEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceE
Confidence            566777777666655443    33333  44443333333  388889988877  7899999999999999964 6778


Q ss_pred             EEEcccCccceEEEEEeeC-CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEE
Q 004685           86 HSIETGHSANVFCTKFVPE-TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (737)
Q Consensus        86 ~~~~~~h~~~V~~v~~sp~-~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~  164 (737)
                      ..+ .+|.++|.+++|.-. .....|++++.|.++++|-++.+....      +.+....+|...|-+++..+ ++..++
T Consensus       138 ~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~------~~~~~~~GHk~~V~sVsv~~-sgtr~~  209 (423)
T KOG0313|consen  138 KTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV------KALKVCRGHKRSVDSVSVDS-SGTRFC  209 (423)
T ss_pred             EEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh------hHHhHhcccccceeEEEecC-CCCeEE
Confidence            888 799999998887653 213369999999999999998654322      33455569999999999998 568888


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (737)
Q Consensus       165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd  244 (737)
                      +|+.|.+|++|+......-.............-.....+....+....+|..+|.++.|++  ...+++++.|.+|+.||
T Consensus       210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WD  287 (423)
T KOG0313|consen  210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWD  287 (423)
T ss_pred             eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEE
Confidence            9999999999994332211000000000001111111222334556678999999999998  46999999999999999


Q ss_pred             CCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +.++..+.++.                      .+..++++..+|...+|++|+.|..+++||.+++
T Consensus       288 letg~~~~~~~----------------------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  288 LETGGLKSTLT----------------------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             eecccceeeee----------------------cCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence            99987655442                      1225999999999999999999999999998884

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.7e-31  Score=243.80  Aligned_cols=268  Identities=16%  Similarity=0.218  Sum_probs=235.0

Q ss_pred             EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004685           86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  165 (737)
Q Consensus        86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  165 (737)
                      ..+ ++|...|.++.|+++  ..++++++.||.+.|||.-+...          ++.+.-....|..++|+| .++++++
T Consensus        49 r~L-kGH~~Ki~~~~ws~D--sr~ivSaSqDGklIvWDs~TtnK----------~haipl~s~WVMtCA~sP-Sg~~VAc  114 (343)
T KOG0286|consen   49 RTL-KGHLNKIYAMDWSTD--SRRIVSASQDGKLIVWDSFTTNK----------VHAIPLPSSWVMTCAYSP-SGNFVAC  114 (343)
T ss_pred             EEe-cccccceeeeEecCC--cCeEEeeccCCeEEEEEcccccc----------eeEEecCceeEEEEEECC-CCCeEEe
Confidence            455 899999999999999  69999999999999999886432          566666788999999999 7799999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~  245 (737)
                      |+.|....||++.....-                   +.........+|...+.++.|-++  ..|+|++.|.++.+||+
T Consensus       115 GGLdN~Csiy~ls~~d~~-------------------g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDi  173 (343)
T KOG0286|consen  115 GGLDNKCSIYPLSTRDAE-------------------GNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDI  173 (343)
T ss_pred             cCcCceeEEEeccccccc-------------------ccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEc
Confidence            999999999999865311                   222334556789999999999985  59999999999999999


Q ss_pred             CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCC
Q 004685          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS  324 (737)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~  324 (737)
                      ++++.+..+                    +||.+ .|.+++++| +++.+++|+-|+..++||++.+.            
T Consensus       174 e~g~~~~~f--------------------~GH~g-DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~------------  220 (343)
T KOG0286|consen  174 ETGQQTQVF--------------------HGHTG-DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ------------  220 (343)
T ss_pred             ccceEEEEe--------------------cCCcc-cEEEEecCCCCCCeEEecccccceeeeeccCcc------------
Confidence            999877665                    56666 599999999 99999999999999999998742            


Q ss_pred             eeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchh
Q 004685          325 KIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRH  404 (737)
Q Consensus       325 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  404 (737)
                                                                                                      
T Consensus       221 --------------------------------------------------------------------------------  220 (343)
T KOG0286|consen  221 --------------------------------------------------------------------------------  220 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHH
Q 004685          405 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI  484 (737)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (737)
                                                                                                      
T Consensus       221 --------------------------------------------------------------------------------  220 (343)
T KOG0286|consen  221 --------------------------------------------------------------------------------  220 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCcccc
Q 004685          485 KKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVE  564 (737)
Q Consensus       485 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (737)
                                                                                                      
T Consensus       221 --------------------------------------------------------------------------------  220 (343)
T KOG0286|consen  221 --------------------------------------------------------------------------------  220 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccceeeeccCCCCccccccCCCCCCCCCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEEE
Q 004685          565 ANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIAS  644 (737)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~s  644 (737)
                                                                        .++.|.||...|..+.    |.|+|.-++|
T Consensus       221 --------------------------------------------------c~qtF~ghesDINsv~----ffP~G~afat  246 (343)
T KOG0286|consen  221 --------------------------------------------------CVQTFEGHESDINSVR----FFPSGDAFAT  246 (343)
T ss_pred             --------------------------------------------------eeEeecccccccceEE----EccCCCeeee
Confidence                                                              3347999999988777    8999999999


Q ss_pred             ecCCCcEEEEEcCcccEEEEeecC--CCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCCCCCCCh
Q 004685          645 GSDDGRWFIWEKQTGRLIKMLLGD--EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT  715 (737)
Q Consensus       645 gs~D~~i~iWd~~t~~~~~~l~gH--~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~  715 (737)
                      ||+|+++++||++..+.+.++..-  ..+|++|+||..|++|+.|..|.++-+||.-+++..-.+.||..|+.
T Consensus       247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvS  319 (343)
T KOG0286|consen  247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVS  319 (343)
T ss_pred             cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeE
Confidence            999999999999999999999854  56899999999999999999999999999999999999999999986

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=8e-32  Score=245.27  Aligned_cols=205  Identities=18%  Similarity=0.247  Sum_probs=174.3

Q ss_pred             eeecccCCceEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           44 RELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~---~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      .+..||+.+|..++|||   +|-+|++++.|+.-.+-+-++|..+.+| .+|++.|.+...+.+  -.+-++++.|-+-+
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~n--a~~aasaaadftak   84 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKN--ATRAASAAADFTAK   84 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCch--hhhhhhhcccchhh
Confidence            45679999999999996   8999999999999999999999999999 799999999999988  47889999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      +||.-+++.          +..+. |...|..++|+. +.++|++|+.++-+++||++..+.+                 
T Consensus        85 vw~a~tgde----------lhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~Ap-----------------  135 (334)
T KOG0278|consen   85 VWDAVTGDE----------LHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAP-----------------  135 (334)
T ss_pred             hhhhhhhhh----------hhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCC-----------------
Confidence            999887543          55554 889999999998 6688889999999999999987744                 


Q ss_pred             cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (737)
                             .....+|...|..+-|...+ +.|+++..|++||+||.+++..++++...                      .
T Consensus       136 -------p~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~sL~~~----------------------s  185 (334)
T KOG0278|consen  136 -------PKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQSLEFN----------------------S  185 (334)
T ss_pred             -------chhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEEEecC----------------------C
Confidence                   33445678889999999864 78999999999999999999877766321                      1


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +|+++.++++|++|.++ ..+.|.+||..+.
T Consensus       186 ~VtSlEvs~dG~ilTia-~gssV~Fwdaksf  215 (334)
T KOG0278|consen  186 PVTSLEVSQDGRILTIA-YGSSVKFWDAKSF  215 (334)
T ss_pred             CCcceeeccCCCEEEEe-cCceeEEeccccc
Confidence            59999999999966555 4559999998874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.7e-31  Score=274.72  Aligned_cols=472  Identities=18%  Similarity=0.190  Sum_probs=304.7

Q ss_pred             cccccccccccccccccceee--cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685           26 VNHSLQMHSSLVRRLSQEREL--EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l--~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      ....+.+|+  +++.+..+.|  ..-+..|+|++-+++..+||.|..||.|+||+...+....++ .+|...|+++.|..
T Consensus        41 a~E~vn~Wd--lRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tf-ngHK~AVt~l~fd~  117 (888)
T KOG0306|consen   41 ALEQVNIWD--LRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITF-NGHKAAVTTLKFDK  117 (888)
T ss_pred             ccccEeEEe--eecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeee-cccccceEEEEEcc
Confidence            345688888  5555333332  334468999999999999999999999999999998888888 89999999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      .  |..|++|+.|+.|.+||+-...+          +..+.+|.+.|+..-|.. +..++++++.|+.|++||+.+..+ 
T Consensus       118 ~--G~rlaSGskDt~IIvwDlV~E~G----------l~rL~GHkd~iT~~~F~~-~~~~lvS~sKDs~iK~WdL~tqhC-  183 (888)
T KOG0306|consen  118 I--GTRLASGSKDTDIIVWDLVGEEG----------LFRLRGHKDSITQALFLN-GDSFLVSVSKDSMIKFWDLETQHC-  183 (888)
T ss_pred             c--CceEeecCCCccEEEEEecccee----------eEEeecchHHHhHHhccC-CCeEEEEeccCceEEEEeccccee-
Confidence            9  89999999999999999986444          678999999999999987 568999999999999999998653 


Q ss_pred             CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC--------------
Q 004685          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP--------------  249 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~--------------  249 (737)
                                              +.+.-.|...++++++.+   +.+++++.|+.+++|++....              
T Consensus       184 ------------------------f~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~  236 (888)
T KOG0306|consen  184 ------------------------FETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLR  236 (888)
T ss_pred             ------------------------eeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeecc
Confidence                                    222234667788888876   477778888888888871100              


Q ss_pred             ----------Cc---ccc-------c---------------------C---------CC---------------------
Q 004685          250 ----------PL---TSC-------Q---------------------K---------RM---------------------  258 (737)
Q Consensus       250 ----------~~---~~~-------~---------------------~---------~~---------------------  258 (737)
                                .+   ...       .                     .         ..                     
T Consensus       237 G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~  316 (888)
T KOG0306|consen  237 GTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLET  316 (888)
T ss_pred             ceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHh
Confidence                      00   000       0                     0         00                     


Q ss_pred             --------------CCCCC----------cccccc-------------ccccCCCCcccceeEEEEcCCCCEEEEEeCCC
Q 004685          259 --------------SPPPC----------VNYFCP-------------MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE  301 (737)
Q Consensus       259 --------------~~~~~----------~~~~~~-------------~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg  301 (737)
                                    .+...          +..++.             ..+...||.. .|.++++|.+...+++|+ .+
T Consensus       317 ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sga-~~  394 (888)
T KOG0306|consen  317 IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASGA-GE  394 (888)
T ss_pred             eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeecC-CC
Confidence                          00000          000000             0012234555 599999998876555554 55


Q ss_pred             eEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCc
Q 004685          302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPY  381 (737)
Q Consensus       302 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (737)
                      .+.+|+..+.++...+.. + -+...+|-|....+......+......                                
T Consensus       395 SikiWn~~t~kciRTi~~-~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfd--------------------------------  440 (888)
T KOG0306|consen  395 SIKIWNRDTLKCIRTITC-G-YILASKFVPGDRYIVLGTKNGELQVFD--------------------------------  440 (888)
T ss_pred             cEEEEEccCcceeEEecc-c-cEEEEEecCCCceEEEeccCCceEEEE--------------------------------
Confidence            999999998765444332 2 344455556433222222111110000                                


Q ss_pred             cchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHH
Q 004685          382 YGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEAL  461 (737)
Q Consensus       382 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (737)
                      .+                                                      +             ..+-+...|+
T Consensus       441 la------------------------------------------------------S-------------~~l~Eti~AH  453 (888)
T KOG0306|consen  441 LA------------------------------------------------------S-------------ASLVETIRAH  453 (888)
T ss_pred             ee------------------------------------------------------h-------------hhhhhhhhcc
Confidence            00                                                      0             0000111122


Q ss_pred             HHHHHhcccCCCchhhHHHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCC
Q 004685          462 DFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDS  541 (737)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (737)
                      +.+.+.....|+.                                                       ..-.+++.+.++
T Consensus       454 dgaIWsi~~~pD~-------------------------------------------------------~g~vT~saDktV  478 (888)
T KOG0306|consen  454 DGAIWSISLSPDN-------------------------------------------------------KGFVTGSADKTV  478 (888)
T ss_pred             ccceeeeeecCCC-------------------------------------------------------CceEEecCCcEE
Confidence            2222223333332                                                       223333334443


Q ss_pred             CcchhhhhcccCCCCCCCCcccccccccccceeeeccCCCCccccccCCCC-CCCCCCCC-CCCCCCCCccccccceEEE
Q 004685          542 DYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGS-SGSPSSSS-QNDRIPYQPETVIDMKQRY  619 (737)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~  619 (737)
                      .+++-.   +..++.|-.-.         .+.+.-.+.=+.+...-|...| .+..++.+ -+..+.+...++.+..-.+
T Consensus       479 kfWdf~---l~~~~~gt~~k---------~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL  546 (888)
T KOG0306|consen  479 KFWDFK---LVVSVPGTQKK---------VLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL  546 (888)
T ss_pred             EEEeEE---EEeccCcccce---------eeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee
Confidence            333211   01111111100         0000000000000111122212 12222222 2334555667778888899


Q ss_pred             eeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCC
Q 004685          620 VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPS  699 (737)
Q Consensus       620 ~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~  699 (737)
                      +||.-.|.++.    +|||+++++|||.|++|+||=++-|+|-..|.+|++.|.+|.|-|...++.|+|.|+.|+-||-.
T Consensus       547 YGHkLPV~smD----IS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~  622 (888)
T KOG0306|consen  547 YGHKLPVLSMD----ISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE  622 (888)
T ss_pred             cccccceeEEe----ccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechh
Confidence            99999999999    99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCCCCCh
Q 004685          700 ASVPSIVSGGAAGPDT  715 (737)
Q Consensus       700 ~~~~~~~~~~~~~~~~  715 (737)
                      +=++++.+.||.+.+-
T Consensus       623 kFe~iq~L~~H~~ev~  638 (888)
T KOG0306|consen  623 KFEEIQKLDGHHSEVW  638 (888)
T ss_pred             hhhhheeeccchheee
Confidence            9999999999988764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.98  E-value=2e-30  Score=240.36  Aligned_cols=231  Identities=19%  Similarity=0.240  Sum_probs=192.5

Q ss_pred             cccCCCCCccccccccccc---ccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCcc
Q 004685           18 RHTDTRPDVNHSLQMHSSL---VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA   94 (737)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~   94 (737)
                      ..+..+.+-++++.+|+..   .+.+.+.+.|.||...|..+..++||++.++++.|+++++||+.+++..+.| .+|..
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~  106 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTK  106 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCC
Confidence            4445566777888888743   3335668999999999999999999999999999999999999999999999 79999


Q ss_pred             ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccC--CCceeEEEEecCC-CcEEEEEeCCCc
Q 004685           95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH--TRRVKKLAVEVGN-PHVVWSASEDGT  171 (737)
Q Consensus        95 ~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~-~~~l~s~s~Dg~  171 (737)
                      .|.+++|+|+  ...+++|+.|.+|++|++....           ..++..+  .+.|.|+.|+|.. .-+|++++.|++
T Consensus       107 dVlsva~s~d--n~qivSGSrDkTiklwnt~g~c-----------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt  173 (315)
T KOG0279|consen  107 DVLSVAFSTD--NRQIVSGSRDKTIKLWNTLGVC-----------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT  173 (315)
T ss_pred             ceEEEEecCC--CceeecCCCcceeeeeeecccE-----------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce
Confidence            9999999999  6999999999999999997421           3333333  7899999999953 468999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004685          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (737)
Q Consensus       172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~  251 (737)
                      |++||+++.+.                         ...+.+|...++.++++|+ |.++++|+.||.+.+||++.++.+
T Consensus       174 vKvWnl~~~~l-------------------------~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~l  227 (315)
T KOG0279|consen  174 VKVWNLRNCQL-------------------------RTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNL  227 (315)
T ss_pred             EEEEccCCcch-------------------------hhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCcee
Confidence            99999998762                         3455678899999999998 689999999999999999988765


Q ss_pred             ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ..+.                     + ...|.+++|+|+..+|+.+... .|+|||+.+.
T Consensus       228 ysl~---------------------a-~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~  264 (315)
T KOG0279|consen  228 YSLE---------------------A-FDIVNSLCFSPNRYWLCAATAT-SIKIWDLESK  264 (315)
T ss_pred             Eecc---------------------C-CCeEeeEEecCCceeEeeccCC-ceEEEeccch
Confidence            4432                     2 2259999999997766666555 6999999985

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=9.4e-32  Score=255.38  Aligned_cols=194  Identities=17%  Similarity=0.315  Sum_probs=163.6

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      ...|.|+.+  |.+.+++|..|++|+|||..+..++..+ .+|++.|.|+.|..    ..+++|+.|.+|++||++++  
T Consensus       197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd~----rviisGSSDsTvrvWDv~tg--  267 (499)
T KOG0281|consen  197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYDE----RVIVSGSSDSTVRVWDVNTG--  267 (499)
T ss_pred             CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeeccc----eEEEecCCCceEEEEeccCC--
Confidence            467899887  4567999999999999999999988888 89999999999975    58999999999999999974  


Q ss_pred             CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (737)
                              +++.++..|...|..+.|+.   .++++++.|.++.+||+.....+                      ....
T Consensus       268 --------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i----------------------t~rr  314 (499)
T KOG0281|consen  268 --------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI----------------------TLRR  314 (499)
T ss_pred             --------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH----------------------HHHH
Confidence                    34788899999999999964   68999999999999999876522                      1122


Q ss_pred             CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004685          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (737)
Q Consensus       210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  289 (737)
                      -..+|...|+.+.|+.   +++++++.|.+|++|++.+...+.++                    ++|.. .|.|+.+  
T Consensus       315 VLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl--------------------~gHkR-GIAClQY--  368 (499)
T KOG0281|consen  315 VLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTL--------------------NGHKR-GIACLQY--  368 (499)
T ss_pred             HHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhh--------------------hcccc-cceehhc--
Confidence            3346788999999984   59999999999999999998766554                    55665 3776665  


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCC
Q 004685          290 NGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       290 ~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .|+++++|+.|.+|++||+..|
T Consensus       369 r~rlvVSGSSDntIRlwdi~~G  390 (499)
T KOG0281|consen  369 RDRLVVSGSSDNTIRLWDIECG  390 (499)
T ss_pred             cCeEEEecCCCceEEEEecccc
Confidence            8899999999999999999885

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.2e-29  Score=237.36  Aligned_cols=214  Identities=22%  Similarity=0.374  Sum_probs=173.2

Q ss_pred             cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC--
Q 004685           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--  115 (737)
Q Consensus        38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~--  115 (737)
                      +++++.+.|+.-.+.|++|.|+++|.+|++++.|.+|+|||..+++.++++ ..++..|..++|...  ...++.++.  
T Consensus         2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~--~~~~i~sStk~   78 (311)
T KOG1446|consen    2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHH--SNTVIHSSTKE   78 (311)
T ss_pred             cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecC--CceEEEccCCC
Confidence            456777888888889999999999999999999999999999999999999 678889999999887  466666665  


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      |.+|+..++...          ++++.+.+|...|.+++.+|.+ ..+++++.|++|++||++..++.           .
T Consensus        79 d~tIryLsl~dN----------kylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq-----------g  136 (311)
T KOG1446|consen   79 DDTIRYLSLHDN----------KYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ-----------G  136 (311)
T ss_pred             CCceEEEEeecC----------ceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCc-----------e
Confidence            899999999863          4589999999999999999955 78889999999999999976643           1


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC--CcccccCCCCCCCCcccccccccc
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP--PLTSCQKRMSPPPCVNYFCPMHLS  273 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  273 (737)
                      .+.                ...-..++|+|+ |-++|++.....|++||+|+..  |..++..             ..  
T Consensus       137 ~l~----------------~~~~pi~AfDp~-GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i-------------~~--  184 (311)
T KOG1446|consen  137 LLN----------------LSGRPIAAFDPE-GLIFALANGSELIKLYDLRSFDKGPFTTFSI-------------TD--  184 (311)
T ss_pred             EEe----------------cCCCcceeECCC-CcEEEEecCCCeEEEEEecccCCCCceeEcc-------------CC--
Confidence            111                122345789997 5788888887799999999753  2222211             10  


Q ss_pred             CCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       274 ~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                         .....++.+.|||||++++.++..+.+++.|.-+|
T Consensus       185 ---~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G  219 (311)
T KOG1446|consen  185 ---NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG  219 (311)
T ss_pred             ---CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence               11124899999999999999999999999998775

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-30  Score=264.72  Aligned_cols=212  Identities=14%  Similarity=0.282  Sum_probs=184.3

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      ++..++|..|+..|.++.|+|...+++++-.+|.|.|||.++...++.| .-...||.+.+|-+.  .+.+++|+.|..|
T Consensus         3 l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaR--knWiv~GsDD~~I   79 (794)
T KOG0276|consen    3 LDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIAR--KNWIVTGSDDMQI   79 (794)
T ss_pred             chhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeeec--cceEEEecCCceE
Confidence            3445667779999999999999999999999999999999999999999 677899999999999  6999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      ++|+.++.+          .+..+.+|.+.|++++.+|.. -+++|+|.|-+|++||....=.                 
T Consensus        80 rVfnynt~e----------kV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa-----------------  131 (794)
T KOG0276|consen   80 RVFNYNTGE----------KVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWA-----------------  131 (794)
T ss_pred             EEEecccce----------eeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCcee-----------------
Confidence            999999743          388999999999999999965 5677999999999999887532                 


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                             ....+.+|...|.+++|+|.+.+.+|+++-|++|++|.+.+..+..++                    .+|..
T Consensus       132 -------~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl--------------------~gHek  184 (794)
T KOG0276|consen  132 -------CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL--------------------EGHEK  184 (794)
T ss_pred             -------eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee--------------------ecccc
Confidence                   234456788899999999999999999999999999999876554443                    34555


Q ss_pred             cceeEEEEcC--CCCEEEEEeCCCeEEEEEcCC
Q 004685          280 LHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       280 ~~i~~v~~sp--~g~~l~~g~~dg~v~iwd~~~  310 (737)
                       .|+++.+-+  |..+|++|+.|.+|+|||.++
T Consensus       185 -GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt  216 (794)
T KOG0276|consen  185 -GVNCVDYYTGGDKPYLISGADDLTIKVWDYQT  216 (794)
T ss_pred             -CcceEEeccCCCcceEEecCCCceEEEeecch
Confidence             499999987  557999999999999999988

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=5.5e-30  Score=266.21  Aligned_cols=398  Identities=14%  Similarity=0.148  Sum_probs=287.7

Q ss_pred             ccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEEcccCccceEEEEEeeCCCCCEEEEEE
Q 004685           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGA  114 (737)
Q Consensus        37 ~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs  114 (737)
                      ...+.+.+++.||-..|.+|.|+.|.++|++|+.|-.++||+++..+-  ...+ .+|..+|..+-|..+  ..-+++.+
T Consensus       132 ~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l-~gHkd~VvacfF~~~--~~~l~tvs  208 (893)
T KOG0291|consen  132 FNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYAL-NGHKDYVVACFFGAN--SLDLYTVS  208 (893)
T ss_pred             cCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEec-cCCCcceEEEEeccC--cceEEEEe
Confidence            445677788999999999999999999999999999999999987654  4555 799999999999998  57899999


Q ss_pred             CCCcEEEEecCCCCCCCC-----------------CCCCCCCc-------eeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004685          115 GDAEVRLFNLSRFSGRGL-----------------DDNAITPS-------ALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (737)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~-----------------~~~~~~~~-------~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg  170 (737)
                      .||.+.+|.....-....                 ...+..+.       ..+......|++.+|++ ..++|++|-..|
T Consensus       209 kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG  287 (893)
T KOG0291|consen  209 KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSG  287 (893)
T ss_pred             cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCC
Confidence            999999998872111000                 00000010       11222347899999999 779999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC-CcEEEEECCCCC
Q 004685          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLP  249 (737)
Q Consensus       171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-g~i~iwd~~~~~  249 (737)
                      -..+|.+.....+              ..           .......|..++|+.. |.++|.|+.. |.+-||+.++..
T Consensus       288 ~f~LyelP~f~li--------------h~-----------LSis~~~I~t~~~N~t-GDWiA~g~~klgQLlVweWqsEs  341 (893)
T KOG0291|consen  288 EFGLYELPDFNLI--------------HS-----------LSISDQKILTVSFNST-GDWIAFGCSKLGQLLVWEWQSES  341 (893)
T ss_pred             eeEEEecCCceEE--------------EE-----------eecccceeeEEEeccc-CCEEEEcCCccceEEEEEeeccc
Confidence            9999998876532              11           1112357889999986 6899998876 899999998754


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeee
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF  329 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  329 (737)
                      -+..                    ..+|.. .+++++++|||+++++|+.||+|+|||..++-+...+..|...++.++|
T Consensus       342 YVlK--------------------QQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f  400 (893)
T KOG0291|consen  342 YVLK--------------------QQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQF  400 (893)
T ss_pred             eeee--------------------cccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEE
Confidence            3322                    244554 6999999999999999999999999999998888888899999999999


Q ss_pred             ccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhH
Q 004685          330 TPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCI  409 (737)
Q Consensus       330 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  409 (737)
                      +...+.+.....++.+..-.+...                        +.|.            .-..+.|.. +     
T Consensus       401 ~~~g~~llssSLDGtVRAwDlkRY------------------------rNfR------------Tft~P~p~Q-f-----  438 (893)
T KOG0291|consen  401 TARGNVLLSSSLDGTVRAWDLKRY------------------------RNFR------------TFTSPEPIQ-F-----  438 (893)
T ss_pred             EecCCEEEEeecCCeEEeeeeccc------------------------ceee------------eecCCCcee-e-----
Confidence            997765554444433332111111                        1110            000000000 0     


Q ss_pred             HHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhhh
Q 004685          410 RAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIA  489 (737)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (737)
                                            ..+..||.                                                  
T Consensus       439 ----------------------scvavD~s--------------------------------------------------  446 (893)
T KOG0291|consen  439 ----------------------SCVAVDPS--------------------------------------------------  446 (893)
T ss_pred             ----------------------eEEEEcCC--------------------------------------------------
Confidence                                  00000000                                                  


Q ss_pred             hhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCccccccccc
Q 004685          490 AAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLH  569 (737)
Q Consensus       490 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  569 (737)
                                                                                                      
T Consensus       447 --------------------------------------------------------------------------------  446 (893)
T KOG0291|consen  447 --------------------------------------------------------------------------------  446 (893)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccceeeeccCCCCccccccCCCCCCCCCCCC--CCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEEEecC
Q 004685          570 GSLNVRIHRRGDSARETVDANGSSGSPSSSS--QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSD  647 (737)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~  647 (737)
                                              +..++++  ..-.+.+|..++++++..+.||.+.|..+.    |+|+++.|||||.
T Consensus       447 ------------------------GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~----f~~~~~~LaS~SW  498 (893)
T KOG0291|consen  447 ------------------------GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS----FSPDGSLLASGSW  498 (893)
T ss_pred             ------------------------CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE----EccccCeEEeccc
Confidence                                    0011111  122355678888889999999999998766    8999999999999


Q ss_pred             CCcEEEEEcCccc-EEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccC
Q 004685          648 DGRWFIWEKQTGR-LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG  708 (737)
Q Consensus       648 D~~i~iWd~~t~~-~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~  708 (737)
                      |.+|++||+-... .+.+|. +..-|++|+|+|||+-||.+..||.|-+||++.....-++.
T Consensus       499 DkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id  559 (893)
T KOG0291|consen  499 DKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID  559 (893)
T ss_pred             cceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence            9999999987553 444444 45679999999999999999999999999999877664444

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.2e-30  Score=248.35  Aligned_cols=188  Identities=16%  Similarity=0.189  Sum_probs=161.8

Q ss_pred             EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEE
Q 004685           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (737)
Q Consensus        85 ~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~  164 (737)
                      ...+ .+|..+|+.+-|+|+  -.++++++.|++|++||..+++          ....+++|.+.+.+|+|+. .+.+++
T Consensus       101 ~~~l-~g~r~~vt~v~~hp~--~~~v~~as~d~tikv~D~~tg~----------~e~~LrGHt~sv~di~~~a-~Gk~l~  166 (406)
T KOG0295|consen  101 VQKL-AGHRSSVTRVIFHPS--EALVVSASEDATIKVFDTETGE----------LERSLRGHTDSVFDISFDA-SGKYLA  166 (406)
T ss_pred             hhhh-hccccceeeeeeccC--ceEEEEecCCceEEEEEccchh----------hhhhhhccccceeEEEEec-CccEEE
Confidence            3344 679999999999999  6888999999999999999743          3688999999999999998 669999


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (737)
Q Consensus       165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd  244 (737)
                      +++.|-.+++||+.+..                        ..+....+|...|.+++|-|. +.++++++.|.+|++|+
T Consensus       167 tcSsDl~~~LWd~~~~~------------------------~c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~We  221 (406)
T KOG0295|consen  167 TCSSDLSAKLWDFDTFF------------------------RCIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAWE  221 (406)
T ss_pred             ecCCccchhheeHHHHH------------------------HHHHHhcCcccceeeEEEEec-CCeeeecccccceeEEe
Confidence            99999999999998753                        124555678888999999997 58999999999999999


Q ss_pred             CCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCC
Q 004685          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS  324 (737)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~  324 (737)
                      +.++-.+.++                    .+|.. +|..++.+.||..+++++.|.+|++|-+.+......+..+.+++
T Consensus       222 ~~tg~cv~t~--------------------~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v  280 (406)
T KOG0295|consen  222 CDTGYCVKTF--------------------PGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV  280 (406)
T ss_pred             cccceeEEec--------------------cCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence            9988655444                    33444 79999999999999999999999999999988888888999999


Q ss_pred             eeeeeccC
Q 004685          325 KIMSFTPT  332 (737)
Q Consensus       325 ~~~~~~p~  332 (737)
                      .+++|.|.
T Consensus       281 Eci~wap~  288 (406)
T KOG0295|consen  281 ECIAWAPE  288 (406)
T ss_pred             EEEEeccc
Confidence            99999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.9e-31  Score=253.99  Aligned_cols=235  Identities=16%  Similarity=0.236  Sum_probs=180.1

Q ss_pred             CCCC-CChhhhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 004685            4 FPFH-DGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSS   81 (737)
Q Consensus         4 ~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g-~~lasgs~dg~V~vwd~~~   81 (737)
                      .|++ ++.+.|+-..+|.-   .+....++.+...+.  .+..|.||.+.|.||+=+|.. ..+|+|+.||.|+|||+.+
T Consensus        24 ~~rn~dp~lhPfe~~rEy~---RALNAtKleR~fakP--Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq   98 (433)
T KOG0268|consen   24 VPRNYDPALHPFERAREYT---RALNATKLERVFAKP--FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ   98 (433)
T ss_pred             cccccCCcCChhhhHHHHH---HHhhhHHHHHHhhcc--chhhccccccccchhhcCcchhhhhhccccCceEEEEehhh
Confidence            3444 45555555554442   233444555544433  456789999999999999976 7899999999999999999


Q ss_pred             CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCc
Q 004685           82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH  161 (737)
Q Consensus        82 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  161 (737)
                      ..++..| ..|.+.|..|++...    .+++++.|.+|+.|-+..           .+..++.+ ...+..|.-+. ...
T Consensus        99 R~~~~~f-~AH~G~V~Gi~v~~~----~~~tvgdDKtvK~wk~~~-----------~p~~tilg-~s~~~gIdh~~-~~~  160 (433)
T KOG0268|consen   99 RECIRTF-KAHEGLVRGICVTQT----SFFTVGDDKTVKQWKIDG-----------PPLHTILG-KSVYLGIDHHR-KNS  160 (433)
T ss_pred             hhhhhee-ecccCceeeEEeccc----ceEEecCCcceeeeeccC-----------Ccceeeec-ccccccccccc-ccc
Confidence            9999999 899999999999874    688999999999999874           23555543 34466666665 457


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEE
Q 004685          162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  241 (737)
Q Consensus       162 ~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~  241 (737)
                      .++||+.  .|.+||.....++                         ..+.-....|.++.|+|.....|++|..|+.|.
T Consensus       161 ~FaTcGe--~i~IWD~~R~~Pv-------------------------~smswG~Dti~svkfNpvETsILas~~sDrsIv  213 (433)
T KOG0268|consen  161 VFATCGE--QIDIWDEQRDNPV-------------------------SSMSWGADSISSVKFNPVETSILASCASDRSIV  213 (433)
T ss_pred             cccccCc--eeeecccccCCcc-------------------------ceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence            8888886  4999999877644                         112223457899999999888999999999999


Q ss_pred             EEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +||+|...+++.+....                      .-+.++|+|++-.+++|+.|..++.||++.
T Consensus       214 LyD~R~~~Pl~KVi~~m----------------------RTN~IswnPeafnF~~a~ED~nlY~~DmR~  260 (433)
T KOG0268|consen  214 LYDLRQASPLKKVILTM----------------------RTNTICWNPEAFNFVAANEDHNLYTYDMRN  260 (433)
T ss_pred             EEecccCCccceeeeec----------------------cccceecCccccceeeccccccceehhhhh
Confidence            99999999887764322                      245689999888899999999999999886

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.97  E-value=1.3e-30  Score=273.97  Aligned_cols=212  Identities=22%  Similarity=0.327  Sum_probs=191.7

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      ....+++.||.++|...+|+|+.++|++|+.|++||+|.+.+..++..+ .+|..||+++.|+|.  |.+|||++.|++.
T Consensus       441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~--GyYFatas~D~tA  517 (707)
T KOG0263|consen  441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPR--GYYFATASHDQTA  517 (707)
T ss_pred             CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCC--ceEEEecCCCcee
Confidence            3455679999999999999999999999999999999999999999888 799999999999999  8999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      ++|....          ..|++.+.+|-+.|.|+.|+| +..++++||.|.+|++||+.++..                 
T Consensus       518 rLWs~d~----------~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~-----------------  569 (707)
T KOG0263|consen  518 RLWSTDH----------NKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS-----------------  569 (707)
T ss_pred             eeeeccc----------CCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcE-----------------
Confidence            9999886          356899999999999999999 789999999999999999999862                 


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                              +..+.+|...|.+++|+|+ |.+|++|+.|+.|++||+.++.++..+                    .+| .
T Consensus       570 --------VRiF~GH~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------------------~~H-t  619 (707)
T KOG0263|consen  570 --------VRIFTGHKGPVTALAFSPC-GRYLASGDEDGLIKIWDLANGSLVKQL--------------------KGH-T  619 (707)
T ss_pred             --------EEEecCCCCceEEEEEcCC-CceEeecccCCcEEEEEcCCCcchhhh--------------------hcc-c
Confidence                    3334578999999999996 799999999999999999998877665                    345 3


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      +.|.++.|+.+|..|++|+.|+.|++||+....
T Consensus       620 ~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  620 GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            369999999999999999999999999998743

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.9e-28  Score=254.93  Aligned_cols=363  Identities=15%  Similarity=0.165  Sum_probs=271.0

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                      .+...|++++.||+|.+|++....|...+-++.....++.|  ..+.+|.|++|+|+  |.+++.|. .+.+.||.....
T Consensus        53 e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f--~fk~~v~~i~fSPn--g~~fav~~-gn~lqiw~~P~~  127 (893)
T KOG0291|consen   53 ETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRF--NFKRGVGAIKFSPN--GKFFAVGC-GNLLQIWHAPGE  127 (893)
T ss_pred             ecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEE--eecCccceEEECCC--CcEEEEEe-cceeEEEecCcc
Confidence            47789999999999999999999999999999988888877  36789999999999  67777765 578999987642


Q ss_pred             CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                      ...  .-+.+.....+.+|.+.|+++.|+. +.++|++|+.|.++++|+++..+..                       .
T Consensus       128 ~~~--~~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~~-----------------------~  181 (893)
T KOG0291|consen  128 IKN--EFNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKNL-----------------------F  181 (893)
T ss_pred             hhc--ccCcceEeeeecCCccceeEEEecc-CCceEEeccccceEEEEEecccccc-----------------------c
Confidence            221  1122233467789999999999998 6799999999999999999887632                       1


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccC-----------CCCCCCC-ccc-cc--c-cc
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK-----------RMSPPPC-VNY-FC--P-MH  271 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~-----------~~~~~~~-~~~-~~--~-~~  271 (737)
                      .....+|...|.++-|..+ ...+++.+.||.+.+|-.....+. ....           ....... ... +.  . .+
T Consensus       182 ~~~l~gHkd~VvacfF~~~-~~~l~tvskdG~l~~W~~~~~P~~-~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~  259 (893)
T KOG0291|consen  182 TYALNGHKDYVVACFFGAN-SLDLYTVSKDGALFVWTCDLRPPE-LDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKH  259 (893)
T ss_pred             eEeccCCCcceEEEEeccC-cceEEEEecCceEEEEEecCCCcc-cccccccccccccccccccchhhhcceEEEEEEee
Confidence            3334578899999999987 578999999999999987632111 0000           0000000 000 00  0 11


Q ss_pred             ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCccccccc
Q 004685          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIR  351 (737)
Q Consensus       272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  351 (737)
                      ...  .....+++.+|++.-..|++|-..|...+|++........+.-..+.+..++|+.++.-++....          
T Consensus       260 ~ln--~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~----------  327 (893)
T KOG0291|consen  260 YLN--QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS----------  327 (893)
T ss_pred             eec--ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC----------
Confidence            111  11236999999999999999999999999999986655444444555555555554322222110          


Q ss_pred             ccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHH
Q 004685          352 VRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCY  431 (737)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  431 (737)
                                                                                                      
T Consensus       328 --------------------------------------------------------------------------------  327 (893)
T KOG0291|consen  328 --------------------------------------------------------------------------------  327 (893)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCcC
Q 004685          432 NARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTG  511 (737)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  511 (737)
                                                                                                      
T Consensus       328 --------------------------------------------------------------------------------  327 (893)
T KOG0291|consen  328 --------------------------------------------------------------------------------  327 (893)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCcccccccccccceeeeccCCCCccccccCCC
Q 004685          512 RVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANG  591 (737)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (737)
                                                                                                      
T Consensus       328 --------------------------------------------------------------------------------  327 (893)
T KOG0291|consen  328 --------------------------------------------------------------------------------  327 (893)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCc
Q 004685          592 SSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV  671 (737)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~  671 (737)
                               ..++..+|.++.-..+.+..||-..++++.    +||||+++|||++||+|+|||..+|-|+.+|.-|+..
T Consensus       328 ---------klgQLlVweWqsEsYVlKQQgH~~~i~~l~----YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~  394 (893)
T KOG0291|consen  328 ---------KLGQLLVWEWQSESYVLKQQGHSDRITSLA----YSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSG  394 (893)
T ss_pred             ---------ccceEEEEEeeccceeeeccccccceeeEE----ECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCc
Confidence                     011222233333445567889999999888    9999999999999999999999999999999999999


Q ss_pred             eEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccC
Q 004685          672 VNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG  708 (737)
Q Consensus       672 V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~  708 (737)
                      |+++.|+..++.++|+|.||+||.||++....-.+..
T Consensus       395 Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft  431 (893)
T KOG0291|consen  395 VTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT  431 (893)
T ss_pred             eEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec
Confidence            9999999999999999999999999999988766654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.4e-30  Score=269.38  Aligned_cols=225  Identities=18%  Similarity=0.264  Sum_probs=181.4

Q ss_pred             eecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        45 ~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      .|+..+..|.+++|+|...+++++--+|.|++||.+=+.++..| ..|.++|..++|+|.  +.+|+||+.|-.|++|+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~--qplFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCC--CCeEEecCCccEEEEEec
Confidence            35556788999999999999999999999999999999999999 799999999999999  799999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (737)
                      .+.          +++.++.+|-+.|..+.|++.- -.++++|.|.+|++|+..+.+.                      
T Consensus        81 k~r----------rclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~----------------------  127 (1202)
T KOG0292|consen   81 KTR----------RCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKC----------------------  127 (1202)
T ss_pred             ccc----------eehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCce----------------------
Confidence            862          3488999999999999999954 5777999999999999998763                      


Q ss_pred             eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC----CCCC-ccccc----cccccCC
Q 004685          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS----PPPC-VNYFC----PMHLSEH  275 (737)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~----~~~~-~~~~~----~~~~~~~  275 (737)
                         +....+|...|.|.+|+|. ..+++++|-|.+||+||+...+....-+...+    .... ...|.    .....-.
T Consensus       128 ---iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE  203 (1202)
T KOG0292|consen  128 ---IAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE  203 (1202)
T ss_pred             ---EEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence               3344567889999999997 47999999999999999976543332222100    0000 00110    0111124


Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      ||.. .|+-++|+|.-..|++|+.|..|++|.+..
T Consensus       204 GHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  204 GHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             cccc-ccceEEecCCcceEEecCCcceeeEEEecc
Confidence            5665 499999999999999999999999998776

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=8.6e-31  Score=254.46  Aligned_cols=160  Identities=16%  Similarity=0.232  Sum_probs=131.4

Q ss_pred             CccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc
Q 004685           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT  171 (737)
Q Consensus        92 h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~  171 (737)
                      -..+|..|.|.|+  |..|++|+..|...+|+....          .....++.|.++|+++.|++ ++.++++|..+|.
T Consensus        95 vkc~V~~v~WtPe--GRRLltgs~SGEFtLWNg~~f----------nFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~  161 (464)
T KOG0284|consen   95 VKCPVNVVRWTPE--GRRLLTGSQSGEFTLWNGTSF----------NFETILQAHDSPVRTMKWSH-NGTWMISGDKGGM  161 (464)
T ss_pred             cccceeeEEEcCC--CceeEeecccccEEEecCcee----------eHHHHhhhhcccceeEEEcc-CCCEEEEcCCCce
Confidence            3568999999999  899999999999999998642          22456789999999999999 7799999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCC-CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004685          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (737)
Q Consensus       172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~  250 (737)
                      |++|+..-..                          +.... .|...|++++|+|.+ ..|++++.||+|+|||....+.
T Consensus       162 iKyWqpnmnn--------------------------Vk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~ke  214 (464)
T KOG0284|consen  162 IKYWQPNMNN--------------------------VKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKE  214 (464)
T ss_pred             EEecccchhh--------------------------hHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCch
Confidence            9999977553                          11122 244789999999974 7999999999999999987654


Q ss_pred             cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      ...+                    .||.- .|.+++|+|....|++|+.|..|++||.+++.
T Consensus       215 e~vL--------------------~GHgw-dVksvdWHP~kgLiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  215 ERVL--------------------RGHGW-DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             hhee--------------------ccCCC-CcceeccCCccceeEEccCCceeEeecCCCcc
Confidence            3322                    22332 59999999999999999999999999999853

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=2.8e-29  Score=235.11  Aligned_cols=162  Identities=22%  Similarity=0.329  Sum_probs=138.4

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      .+|++.|..+.|+|+  |.+|++|+.|..|.+|++..-.         +....+++|++.|..+.|.+ ++..+++++.|
T Consensus        44 ~gh~geI~~~~F~P~--gs~~aSgG~Dr~I~LWnv~gdc---------eN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtD  111 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPD--GSCFASGGSDRAIVLWNVYGDC---------ENFWVLKGHSGAVMELHGMR-DGSHILSCGTD  111 (338)
T ss_pred             CCCcceEEEEEECCC--CCeEeecCCcceEEEEeccccc---------cceeeeccccceeEeeeecc-CCCEEEEecCC
Confidence            789999999999998  8999999999999999976321         23567889999999999999 66888899999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      ++|+.||+++++.                         +..+..|...+++++-+.-+..++.+++.|+++++||+|+..
T Consensus       112 k~v~~wD~~tG~~-------------------------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~  166 (338)
T KOG0265|consen  112 KTVRGWDAETGKR-------------------------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE  166 (338)
T ss_pred             ceEEEEeccccee-------------------------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence            9999999999973                         444556778888888666667899999999999999999877


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .++.+.                      ..+.++++.|..++..+++|+-|+.|++||++.
T Consensus       167 ~~~t~~----------------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~  205 (338)
T KOG0265|consen  167 AIKTFE----------------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK  205 (338)
T ss_pred             hhhccc----------------------cceeEEEEEecccccceeeccccCceeeecccc
Confidence            665542                      223599999999999999999999999999886

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.2e-29  Score=227.27  Aligned_cols=202  Identities=17%  Similarity=0.236  Sum_probs=159.4

Q ss_pred             EEEEEcC-CCCEEEEE-------eCCCcEEEEECCCCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           54 NAISWNS-KGSLLISG-------SDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        54 ~~l~~s~-~g~~lasg-------s~dg~V~vwd~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      .++.||| -.++||.+       ...|.+.|-++...+-+..+. ..-.+.+..++|+++. .+.+++++.||+++|||+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH-ENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCC-cceEEEEecCceEEEecc
Confidence            4688999 23334333       236899999996444333331 1346789999999987 889999999999999997


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (737)
                      ..+.         .|+..++.|...|.++.|++.....++++|.|++|++|+.....                       
T Consensus        91 ~~~s---------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-----------------------  138 (311)
T KOG0277|consen   91 TMPS---------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-----------------------  138 (311)
T ss_pred             CCCC---------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-----------------------
Confidence            6433         56899999999999999999888888999999999999987665                       


Q ss_pred             eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (737)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (737)
                        .+.++.+|...|...+|+|..++++++++.|+.+++||++.......+                    ..|. ..|.+
T Consensus       139 --Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i--------------------~ah~-~Eil~  195 (311)
T KOG0277|consen  139 --SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI--------------------EAHN-SEILC  195 (311)
T ss_pred             --ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE--------------------Eecc-ceeEe
Confidence              345567788999999999999999999999999999999864322222                    1133 24999


Q ss_pred             EEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 004685          285 VTFSP-NGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       285 v~~sp-~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +.|+. +...|++|+.|+.|++||+++.
T Consensus       196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  196 CDWSKYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             ecccccCCcEEEecCCCceEEEEehhhc
Confidence            99997 6677888888999999999983

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.2e-28  Score=231.08  Aligned_cols=216  Identities=21%  Similarity=0.294  Sum_probs=176.8

Q ss_pred             eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEEcccCccceEEEEEeeCC
Q 004685           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFVPET  105 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~------------------~~~~~~~~~~h~~~V~~v~~sp~~  105 (737)
                      ..+..|++++.+.+|+|||.++|||+.|..|+|.|++.                  .-.+.++ -.|..+|+++.|+|. 
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPr-  183 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPR-  183 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecch-
Confidence            45678999999999999999999999999999999872                  1245666 689999999999999 


Q ss_pred             CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 004685          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (737)
Q Consensus       106 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~  185 (737)
                       ..+|++|+.|++|++||+.....+.        -........+|.++.|+| .+.+|+.|....++++||+.+.+... 
T Consensus       184 -e~ILiS~srD~tvKlFDfsK~saKr--------A~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfv-  252 (430)
T KOG0640|consen  184 -ETILISGSRDNTVKLFDFSKTSAKR--------AFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFV-  252 (430)
T ss_pred             -hheEEeccCCCeEEEEecccHHHHH--------HHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEee-
Confidence             6999999999999999998643221        122223567899999999 77899999999999999999876320 


Q ss_pred             CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcc
Q 004685          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (737)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (737)
                                           .......|...|+++.+++. +++.++++.||.|++||--+.+.             ++
T Consensus       253 ---------------------sanPd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rC-------------v~  297 (430)
T KOG0640|consen  253 ---------------------SANPDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNRC-------------VR  297 (430)
T ss_pred             ---------------------ecCcccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHHH-------------HH
Confidence                                 11233468899999999997 68999999999999999877654             43


Q ss_pred             ccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 004685          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (737)
Q Consensus       266 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~  313 (737)
                      ++.      +.|.+..|.+..|..+|+|+++.+.|..|++|.+.++..
T Consensus       298 t~~------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  298 TIG------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             HHH------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence            332      334455799999999999999999999999999999753

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=4e-29  Score=257.52  Aligned_cols=574  Identities=16%  Similarity=0.159  Sum_probs=314.2

Q ss_pred             ccccccceeecccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE
Q 004685           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (737)
Q Consensus        37 ~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs--~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs  114 (737)
                      .++-++.+.+..|..+++|++|+++|+++|+|-  ....++||++.....+..| ..|+..|+|++|+|.  +.++++.+
T Consensus        65 ~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEf-vdHKY~vtcvaFsp~--~kyvvSVG  141 (1080)
T KOG1408|consen   65 VDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEF-VDHKYNVTCVAFSPG--NKYVVSVG  141 (1080)
T ss_pred             ccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhh-hhccccceeeeecCC--CcEEEeec
Confidence            455566677778889999999999999999985  5677999999998888899 799999999999999  68988876


Q ss_pred             C--CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC----CCC-
Q 004685          115 G--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP----PAG-  187 (737)
Q Consensus       115 ~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~----~~~-  187 (737)
                      .  |-.|.+||.+.+.           ...-..-...|..++|+. ++.|++|.+ ...|++|.+..++...    ..+ 
T Consensus       142 sQHDMIVnv~dWr~N~-----------~~asnkiss~Vsav~fsE-dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gR  208 (1080)
T KOG1408|consen  142 SQHDMIVNVNDWRVNS-----------SGASNKISSVVSAVAFSE-DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGR  208 (1080)
T ss_pred             cccceEEEhhhhhhcc-----------cccccccceeEEEEEEcc-CCceeeeee-eeeEEEEEeeccccccCCccccch
Confidence            5  6778889887532           122233467789999998 667887776 4799999998776321    000 


Q ss_pred             ----------------CCCCccceEEEe-ccCCceeecc-------CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004685          188 ----------------SSHQECRNILLD-LRCGAKRSLA-------DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (737)
Q Consensus       188 ----------------~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw  243 (737)
                                      .+.+.|....+. ...|..-...       .....+.-.+||+.+.   +++++|+.+|.|++|
T Consensus       209 s~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~---r~I~cgCa~g~vrlF  285 (1080)
T KOG1408|consen  209 SYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSS---RLIACGCAKGMVRLF  285 (1080)
T ss_pred             hhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeec---ceEEEeeccceeeec
Confidence                            000101000010 1111110000       0011233446677764   699999999999999


Q ss_pred             ECCCCCCcccccCCCCCCCCccccc-ccccc---CCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccee---
Q 004685          244 DRRMLPPLTSCQKRMSPPPCVNYFC-PMHLS---EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM---  316 (737)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~---  316 (737)
                      +..+..-..+++........+.... +.++.   ..+... ....+.|+|....|.....|..++|||++..+++.+   
T Consensus       286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fP-D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s  364 (1080)
T KOG1408|consen  286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFP-DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS  364 (1080)
T ss_pred             CcchhhhccccccccccccchhhcccccccccccCcccCC-ceeEEEecCCCceEEEEEcCceEEEEeccccccccceee
Confidence            9998887776654443222221111 11111   111111 356788999999999999999999999998665433   


Q ss_pred             eeecCCCCeeeeeccC-CCCc-cCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccch---------h
Q 004685          317 RYTVGDASKIMSFTPT-LNGL-ELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGI---------E  385 (737)
Q Consensus       317 ~~~~~~~~~~~~~~p~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~  385 (737)
                      +..|...++.+.--|- .... +.-.+.++|..+.          .+..-++.....  -..+..|..-|         .
T Consensus       365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS----------sD~TIRlW~l~~--ctnn~vyrRNils~~l~ki~y  432 (1080)
T KOG1408|consen  365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS----------SDGTIRLWDLAF--CTNNQVYRRNILSANLSKIPY  432 (1080)
T ss_pred             eeeccceeeeeccccccccCcccccCCccceeEec----------CCCcEEEeeccc--ccccceeecccchhhhhcCcc
Confidence            4445555555443331 1111 1111222233321          111111111111  00001000000         0


Q ss_pred             hhh--hhhhcccCCCCCcchhhhhh----HHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHH
Q 004685          386 ACN--EVLEGHLSGIGPMLRHECLC----IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE  459 (737)
Q Consensus       386 ~~~--~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (737)
                      ...  +++......+.+..-...+.    .|+...    ..+..++|.+|+...+.+-.-         ..+..+ -..+
T Consensus       433 ~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v----Sp~gqhLAsGDr~GnlrVy~L---------q~l~~~-~~~e  498 (1080)
T KOG1408|consen  433 EDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV----SPDGQHLASGDRGGNLRVYDL---------QELEYT-CFME  498 (1080)
T ss_pred             ccCchhhhhhccCCcccccchhhcCcccceEEEEE----CCCcceecccCccCceEEEEe---------hhhhhh-hhee
Confidence            000  11111100000000000000    000000    011223333443333222100         000000 0001


Q ss_pred             HHHHHHHhcc-cCCC--chhhHHHHHHHHhhhhhhhhhcCCC-CCCCCCC--------CCCCcCccccc-c--ccccccc
Q 004685          460 ALDFAIAAQC-LDPS--NSVMAEKVENIKKHIAAAETEKNNK-ANDGGAR--------SEPRTGRVLSL-S--DIIYRSE  524 (737)
Q Consensus       460 ~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~--------~~~~~~~~~~~-~--~~~~~~~  524 (737)
                      |++.....-. .+|.  ..-++++..+--+++.++.-...+. ..+|+..        ......++.+- .  -++|++.
T Consensus       499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~  578 (1080)
T KOG1408|consen  499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVN  578 (1080)
T ss_pred             cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehh
Confidence            1111110000 0111  1222223333333333333222221 1122110        00000111111 1  1367777


Q ss_pred             cCCCCCCCCC---CCCCCCCCcchhhhhcccCCCCCCCCcccccccccccceeeeccCCCCccccccCCCCCCCCCCCCC
Q 004685          525 ANSDASQDGP---RSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQ  601 (737)
Q Consensus       525 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (737)
                      +++...-.++   .....++.+|.+++..-...+                                          ..++
T Consensus       579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~------------------------------------------t~cQ  616 (1080)
T KOG1408|consen  579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV------------------------------------------TVCQ  616 (1080)
T ss_pred             ccccCceeccccccccccceEEEeeeCCCcceEE------------------------------------------EEec
Confidence            6554443333   334555666665552222222                                          2345


Q ss_pred             CCCCCCCccccccceEEEeeeccc-ccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCC
Q 004685          602 NDRIPYQPETVIDMKQRYVGHCNV-GTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPF  680 (737)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~gh~~~-~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~  680 (737)
                      ++++-+......++++.|+|-.+. +..|...  ..|.|.|||+...|++++++|+.+||++.++.||...|+.+.|++|
T Consensus       617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~--lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD  694 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI--LDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND  694 (1080)
T ss_pred             ccceEEEeccccceeeeecccccCCCceEEEE--ECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence            666666677778899999987665 5555544  7899999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCcEEEEcCCC
Q 004685          681 DCVVATSGIDNTIKIWTPSA  700 (737)
Q Consensus       681 ~~~l~S~~~Dg~i~lW~~~~  700 (737)
                      .+.|+|++.||+|.||.+.-
T Consensus       695 CkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  695 CKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             chhheeecCCceEEEEECch
Confidence            99999999999999999865

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.2e-28  Score=251.19  Aligned_cols=255  Identities=15%  Similarity=0.187  Sum_probs=217.9

Q ss_pred             cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC
Q 004685           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~  105 (737)
                      +.+.+.+|.  .++...++.|.--.-||.+..|-+..+++++|+.|..|+||+..+++.++.| .+|.+.|.|++.+|. 
T Consensus        33 ynG~V~IWn--yetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt-  108 (794)
T KOG0276|consen   33 YNGDVQIWN--YETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPT-  108 (794)
T ss_pred             ecCeeEEEe--cccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCC-
Confidence            578899999  5555677888878889999999999999999999999999999999999999 899999999999999 


Q ss_pred             CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 004685          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (737)
Q Consensus       106 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~  185 (737)
                       ..++++++.|-+|++||....         +.+.+++.+|...|.+++|.|.+.+.+++++.|++|++|.+....+   
T Consensus       109 -~P~vLtsSDDm~iKlW~we~~---------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~---  175 (794)
T KOG0276|consen  109 -LPYVLTSSDDMTIKLWDWENE---------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP---  175 (794)
T ss_pred             -CCeEEecCCccEEEEeeccCc---------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC---
Confidence             689999999999999999852         4557899999999999999999999999999999999999987653   


Q ss_pred             CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCc
Q 004685          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (737)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (737)
                                            ..++.+|...|+|+.+-+.+ .-+|++|++|.+|+|||..+...++++          
T Consensus       176 ----------------------nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL----------  223 (794)
T KOG0276|consen  176 ----------------------NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL----------  223 (794)
T ss_pred             ----------------------ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh----------
Confidence                                  34456789999999998843 238999999999999999987655444          


Q ss_pred             cccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCC
Q 004685          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (737)
Q Consensus       265 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  340 (737)
                                .||.. .|..+.|+|.-..+++|+.||+|+||+..+-+....+....+.+.+++-.+..+.++..-
T Consensus       224 ----------eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~  288 (794)
T KOG0276|consen  224 ----------EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF  288 (794)
T ss_pred             ----------hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence                      34544 499999999999999999999999999998766666555666777777777666655543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=9.1e-29  Score=232.94  Aligned_cols=205  Identities=23%  Similarity=0.466  Sum_probs=169.8

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-------ccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~-------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      |.+..+.|..|+|||++|++|+.||-|.|||..+|+..+.++       .-+..+|.|+.|+.+  ...|++|+.||.|+
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDGKIK  288 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCCcEE
Confidence            455678899999999999999999999999999987654431       357899999999999  58999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      +|.+.++..          ++.+. +|+..|+|+.|+.++ ..+++++.|.++++.-+..++.                 
T Consensus       289 vWri~tG~C----------lRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~-----------------  340 (508)
T KOG0275|consen  289 VWRIETGQC----------LRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKC-----------------  340 (508)
T ss_pred             EEEEecchH----------HHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchh-----------------
Confidence            999997432          55555 899999999999966 4555999999999999999873                 


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                              +..+.+|...|+...|.++ +..+++++.||+|++|+..+..             |+.+|.+..      ..
T Consensus       341 --------LKEfrGHsSyvn~a~ft~d-G~~iisaSsDgtvkvW~~Ktte-------------C~~Tfk~~~------~d  392 (508)
T KOG0275|consen  341 --------LKEFRGHSSYVNEATFTDD-GHHIISASSDGTVKVWHGKTTE-------------CLSTFKPLG------TD  392 (508)
T ss_pred             --------HHHhcCccccccceEEcCC-CCeEEEecCCccEEEecCcchh-------------hhhhccCCC------Cc
Confidence                    5667789999999999997 6899999999999999999875             444443332      23


Q ss_pred             cceeEEEEcC-CCCEEEEEeCCCeEEEEEcCC
Q 004685          280 LHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       280 ~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .+|+++..-| +...++++...++|+|.++.-
T Consensus       393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG  424 (508)
T KOG0275|consen  393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG  424 (508)
T ss_pred             ccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence            3688888877 567888998899999988764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=2e-27  Score=218.30  Aligned_cols=206  Identities=19%  Similarity=0.337  Sum_probs=166.2

Q ss_pred             eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-cccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw  122 (737)
                      +.+++|.+.|.+++|+.+|..|++|+.|+++.+|+++..+..... ..+|.+.|-.++|+|.. .++|++++.|.+|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEE
Confidence            668899999999999999999999999999999999887544332 26899999999999987 8899999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                      |++...          +........+ -.-+.|+| ++.+++.++.|..|.+.|.++.+..                   
T Consensus        93 d~r~~k----------~~~~i~~~~e-ni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~-------------------  141 (313)
T KOG1407|consen   93 DIRSGK----------CTARIETKGE-NINITWSP-DGEYIAVGNKDDRITFIDARTYKIV-------------------  141 (313)
T ss_pred             EeccCc----------EEEEeeccCc-ceEEEEcC-CCCEEEEecCcccEEEEEeccccee-------------------
Confidence            999743          2444433333 34589999 5688889999999999999987632                   


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  282 (737)
                             ........+..++|+-+ +++|+.-...|+|.|......+++..+.                    .|.. ..
T Consensus       142 -------~~~~~~~e~ne~~w~~~-nd~Fflt~GlG~v~ILsypsLkpv~si~--------------------AH~s-nC  192 (313)
T KOG1407|consen  142 -------NEEQFKFEVNEISWNNS-NDLFFLTNGLGCVEILSYPSLKPVQSIK--------------------AHPS-NC  192 (313)
T ss_pred             -------ehhcccceeeeeeecCC-CCEEEEecCCceEEEEeccccccccccc--------------------cCCc-ce
Confidence                   11123456788889855 4677777778999999999888777663                    2443 48


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          283 THVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       283 ~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .|+.|+|+|+|+++|+.|..+.+||+..
T Consensus       193 icI~f~p~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             EEEEECCCCceEeeccccceeeccChhH
Confidence            8999999999999999999999999886

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=7.8e-29  Score=241.33  Aligned_cols=205  Identities=20%  Similarity=0.303  Sum_probs=167.9

Q ss_pred             ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      ...+..|.+.|..+.|-++...|++|+.|..|++|+....+  .+.++ .+..++|+.+.|.++  +..+++++.|+.++
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~--~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSD--NKHVIAASNDKNLR  244 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCC--CceEEeecCCCcee
Confidence            34567899999999999999999999999999999998766  55666 677889999999999  79999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      +|++....          ...++.+|++.|+++.|.... ..+++|+.|.+|+.||+....+...+.             
T Consensus       245 ~Wnvd~~r----------~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l-------------  300 (459)
T KOG0288|consen  245 LWNVDSLR----------LRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL-------------  300 (459)
T ss_pred             eeeccchh----------hhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc-------------
Confidence            99998632          367899999999999998743 448899999999999999865331111             


Q ss_pred             cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (737)
                                   ....+..|+.+   +..+++|..|+.||+||.++.......+.                      ++
T Consensus       301 -------------~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~----------------------gg  342 (459)
T KOG0288|consen  301 -------------PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPL----------------------GG  342 (459)
T ss_pred             -------------ccccccceEec---ceeeeecccccceEEEeccCCceeeEeec----------------------Cc
Confidence                         12344555555   35889999999999999998776554421                      12


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      .|+++..+++|..|++++.|.++.+.|+++.+
T Consensus       343 ~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e  374 (459)
T KOG0288|consen  343 RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE  374 (459)
T ss_pred             ceeeEeeccCCeEEeeecCCCceeeeeccccc
Confidence            59999999999999999999999999999843

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-28  Score=259.64  Aligned_cols=212  Identities=20%  Similarity=0.337  Sum_probs=168.5

Q ss_pred             eeec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------------------------------
Q 004685           44 RELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----------------------------------------   82 (737)
Q Consensus        44 ~~l~-~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~----------------------------------------   82 (737)
                      ..+. +|.++|++|.||+||+|||+|+.|+.|+||.+...                                        
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            4456 89999999999999999999999999999987540                                        


Q ss_pred             --------------------eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCcee
Q 004685           83 --------------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  142 (737)
Q Consensus        83 --------------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~  142 (737)
                                          +.++.| .+|.+.|.++.|+.+   ++|++++.|.+|+||++...+          ++..
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~~----------CL~~  405 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRKE----------CLKV  405 (712)
T ss_pred             ccccCCccccCCCccccccccchhhh-hccchhheecccccC---CeeEeccccccEEeecCCCcc----------eeeE
Confidence                                001111 589999999999997   799999999999999998632          3555


Q ss_pred             eccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEE
Q 004685          143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD  222 (737)
Q Consensus       143 ~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  222 (737)
                      | .|.+.|+||+|+|.+.++|++|+.|+.|++|++...+.             ..|             ..-..-|++++
T Consensus       406 F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V-------------v~W-------------~Dl~~lITAvc  458 (712)
T KOG0283|consen  406 F-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV-------------VDW-------------NDLRDLITAVC  458 (712)
T ss_pred             E-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCee-------------Eee-------------hhhhhhheeEE
Confidence            5 49999999999999999999999999999999987652             111             11236789999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCC
Q 004685          223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGE  301 (737)
Q Consensus       223 ~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg  301 (737)
                      |.|+ |+..++|+.+|.+++|+....+.............            ..... .|+.+.|.| +...|++.+.|.
T Consensus       459 y~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K------------k~~~~-rITG~Q~~p~~~~~vLVTSnDS  524 (712)
T KOG0283|consen  459 YSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK------------KKQGK-RITGLQFFPGDPDEVLVTSNDS  524 (712)
T ss_pred             eccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc------------cccCc-eeeeeEecCCCCCeEEEecCCC
Confidence            9998 79999999999999999998776555432211111            11111 599999998 444689999999


Q ss_pred             eEEEEEcCC
Q 004685          302 HVYLMDVNH  310 (737)
Q Consensus       302 ~v~iwd~~~  310 (737)
                      .|+|||..+
T Consensus       525 rIRI~d~~~  533 (712)
T KOG0283|consen  525 RIRIYDGRD  533 (712)
T ss_pred             ceEEEeccc
Confidence            999999866

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.2e-29  Score=246.30  Aligned_cols=262  Identities=31%  Similarity=0.501  Sum_probs=213.0

Q ss_pred             hhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccC
Q 004685           13 DMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH   92 (737)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h   92 (737)
                      +-|.+++++++..+...+..-+..++++...+.|.+|.+.|+.+.|+..|..|++|+.|..|.+||+..+.....|..+|
T Consensus       105 ~~l~~Re~gss~~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH  184 (559)
T KOG1334|consen  105 TALHQRELGSSSRFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGH  184 (559)
T ss_pred             hHHHhhhcCchhHHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccccc
Confidence            35778888888888888888888899999999999999999999999999999999999999999999999988888899


Q ss_pred             ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcE
Q 004685           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  172 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I  172 (737)
                      ...|.--+|-|.++..-+++++.||.+++=.+.....       .+....+..|.++|..++..|..+..|.+++.|+.+
T Consensus       185 ~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~-------~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v  257 (559)
T KOG1334|consen  185 CNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY-------VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVV  257 (559)
T ss_pred             ccchhhhhccCCCCCcCceeccccCceeeeeeccccc-------eecceecccccCccceeeecCCCCCcccccccccce
Confidence            9999999999988667899999999999877664222       122456678999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcc
Q 004685          173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (737)
Q Consensus       173 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~  252 (737)
                      .-+|++...+.....           .        ..........+..++.+|.+.+.+++++.|..+++||.+......
T Consensus       258 ~~~Dlr~~~pa~~~~-----------c--------r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~  318 (559)
T KOG1334|consen  258 FHIDLRQDVPAEKFV-----------C--------READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE  318 (559)
T ss_pred             eeeeeccCCccceee-----------e--------eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcc
Confidence            999999876431110           0        000001124678899999888899999999999999998654321


Q ss_pred             cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      .       ...+..|++.++....+.  .|++++|+.++.-|+++..|-.|++|+-.
T Consensus       319 ~-------n~~~~~f~p~hl~~d~~v--~ITgl~Ysh~~sElLaSYnDe~IYLF~~~  366 (559)
T KOG1334|consen  319 N-------NGVLDKFCPHHLVEDDPV--NITGLVYSHDGSELLASYNDEDIYLFNKS  366 (559)
T ss_pred             c-------cchhhhcCCccccccCcc--cceeEEecCCccceeeeecccceEEeccc
Confidence            1       134678888888773333  59999999999999999999999999433

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=3e-28  Score=232.74  Aligned_cols=163  Identities=20%  Similarity=0.311  Sum_probs=142.6

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      .+|.+.|.|+++.|.  ...|++|+.|++|+|||+.++..          ..++.+|-..|..+++++.. .|+++++.|
T Consensus       148 ~gHlgWVr~vavdP~--n~wf~tgs~DrtikIwDlatg~L----------kltltGhi~~vr~vavS~rH-pYlFs~ged  214 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPG--NEWFATGSADRTIKIWDLATGQL----------KLTLTGHIETVRGVAVSKRH-PYLFSAGED  214 (460)
T ss_pred             hhccceEEEEeeCCC--ceeEEecCCCceeEEEEcccCeE----------EEeecchhheeeeeeecccC-ceEEEecCC
Confidence            789999999999998  68999999999999999997432          56788899999999999955 688899999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      +.|+.||+...+.                         +....+|-..|.+++.+|.. ..|++|+.|.++|+||+|+..
T Consensus       215 k~VKCwDLe~nkv-------------------------IR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~  268 (460)
T KOG0285|consen  215 KQVKCWDLEYNKV-------------------------IRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRA  268 (460)
T ss_pred             CeeEEEechhhhh-------------------------HHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccc
Confidence            9999999998763                         55566888999999999984 899999999999999999987


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      .+..+                    .||.. +|.++.+.|....+++|+.|++|++||+..++
T Consensus       269 ~V~~l--------------------~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk  310 (460)
T KOG0285|consen  269 SVHVL--------------------SGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGK  310 (460)
T ss_pred             eEEEe--------------------cCCCC-cceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence            76655                    34554 69999999988889999999999999998753

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=4.7e-27  Score=247.36  Aligned_cols=257  Identities=15%  Similarity=0.202  Sum_probs=193.1

Q ss_pred             cccccccccccccccccceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeC
Q 004685           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~  104 (737)
                      .+++|-+..  ++..+.+.+|+.-.++|+.++|.-||+ .||+|+..|.+.+||++..+.+..+...|.+.|....|.|.
T Consensus       222 ~~G~ViifN--lK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~  299 (910)
T KOG1539|consen  222 ENGTVIIFN--LKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG  299 (910)
T ss_pred             cCceEEEEE--cccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC
Confidence            456666665  677788888985569999999999986 67888888999999999999888886789999999999998


Q ss_pred             CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 004685          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (737)
Q Consensus       105 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~  184 (737)
                        ...+++++.|..+++|=...+++..      ..++.-.+|..+..|++|.-.+++.+.+++.|++.+.+++.......
T Consensus       300 --epVl~ta~~DnSlk~~vfD~~dg~p------R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~  371 (910)
T KOG1539|consen  300 --EPVLVTAGADNSLKVWVFDSGDGVP------RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ  371 (910)
T ss_pred             --CceEeeccCCCceeEEEeeCCCCcc------hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence              6899999999999999887666542      44677789999999999997788999999999999998864322110


Q ss_pred             CCC-----------------------------------------CCC-CccceEEEeccCCceeec----cCCCCCccce
Q 004685          185 PAG-----------------------------------------SSH-QECRNILLDLRCGAKRSL----ADPPKQTLSL  218 (737)
Q Consensus       185 ~~~-----------------------------------------~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~v  218 (737)
                      ...                                         ..| .......|.++.......    ..+......+
T Consensus       372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~  451 (910)
T KOG1539|consen  372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA  451 (910)
T ss_pred             hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce
Confidence            000                                         000 111122233333222111    1112234678


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe
Q 004685          219 KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY  298 (737)
Q Consensus       219 ~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~  298 (737)
                      ++++.++. |++.+.|...|.|-+|++.++-....+...                 ..|. .+|+.++...-++.+++++
T Consensus       452 ~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~-----------------~ah~-~~V~gla~D~~n~~~vsa~  512 (910)
T KOG1539|consen  452 TAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFGDS-----------------PAHK-GEVTGLAVDGTNRLLVSAG  512 (910)
T ss_pred             EEEEEecc-CceEEEeccCCeEEEEEcccCeeecccccC-----------------cccc-CceeEEEecCCCceEEEcc
Confidence            89999996 689999999999999999988655444210                 1133 3699999999999999999


Q ss_pred             CCCeEEEEEcCCC
Q 004685          299 SGEHVYLMDVNHA  311 (737)
Q Consensus       299 ~dg~v~iwd~~~~  311 (737)
                      .+|.+.+||..+.
T Consensus       513 ~~Gilkfw~f~~k  525 (910)
T KOG1539|consen  513 ADGILKFWDFKKK  525 (910)
T ss_pred             CcceEEEEecCCc
Confidence            9999999999984

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=2.2e-27  Score=245.11  Aligned_cols=289  Identities=16%  Similarity=0.153  Sum_probs=189.4

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEE
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS---LLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFC   98 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~---~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~   98 (737)
                      -+.+..|.+++..  +.....++.||..+|+|+.|-|..+   ++++|+.|+.|++|.++...  ++..+ .+|...+.|
T Consensus        30 fGa~~~Iav~dp~--k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~-~g~~~~~~c  106 (764)
T KOG1063|consen   30 FGAGPAIAVADPE--KILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI-QGHCKECVC  106 (764)
T ss_pred             ecCCceEEEeCcc--cceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee-cCcceeEEE
Confidence            3556777777733  2245678899999999999999877   89999999999999998433  44555 455555544


Q ss_pred             EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC----------------------------------------CCCCCC
Q 004685           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL----------------------------------------DDNAIT  138 (737)
Q Consensus        99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~----------------------------------------~~~~~~  138 (737)
                        +...  .....+...|+++.+||.+..+--+.                                        ....+.
T Consensus       107 --v~a~--~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~  182 (764)
T KOG1063|consen  107 --VVAR--SSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFA  182 (764)
T ss_pred             --EEee--eeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCccee
Confidence              4443  12222237899999999954220000                                        111234


Q ss_pred             CceeeccCCCceeEEEEecCCC--cEEEEEeCCCcEEEEEcCCCCCCCCCC----CCCCccceEEEeccCCceeec---c
Q 004685          139 PSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAG----SSHQECRNILLDLRCGAKRSL---A  209 (737)
Q Consensus       139 ~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~Dg~I~vwdl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~  209 (737)
                      .+..+.+|.+.|.+++|....+  .+|+++|.|..|++|.+.-........    .........+..... -...+   .
T Consensus       183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~-i~~~is~ea  261 (764)
T KOG1063|consen  183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE-IQYRISFEA  261 (764)
T ss_pred             EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee-EEEEEehhh
Confidence            4567889999999999986444  488999999999999986554221000    000000000000000 00011   1


Q ss_pred             CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004685          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (737)
Q Consensus       210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  289 (737)
                      -..+|+..|+++.|+|. +..|++++.|.++.+|......-+-.              ....+.+.++.........|+|
T Consensus       262 ll~GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv--------------~~vRlGe~gg~a~GF~g~lw~~  326 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWV--------------DVVRLGEVGGSAGGFWGGLWSP  326 (764)
T ss_pred             hhcCcccceEEEEEccc-hhhheecccCcceEEEecCCccceEE--------------EEEEeecccccccceeeEEEcC
Confidence            23489999999999997 47899999999999997764321111              1111222334444588899999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCC---cceeeeecCCCCeeeeeccCCCC
Q 004685          290 NGEEVLLSYSGEHVYLMDVNHAG---GRAMRYTVGDASKIMSFTPTLNG  335 (737)
Q Consensus       290 ~g~~l~~g~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~p~~~~  335 (737)
                      ++..+++-+..|..++|-.....   ......+|-..++.+.|.|.+.-
T Consensus       327 n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef  375 (764)
T KOG1063|consen  327 NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF  375 (764)
T ss_pred             CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCE
Confidence            99999999999999999844322   34455677888999999998653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=1.2e-28  Score=234.22  Aligned_cols=220  Identities=18%  Similarity=0.297  Sum_probs=188.6

Q ss_pred             CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004685           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~  101 (737)
                      .++.-+.+|++||  .+.....+.|.||++.|.|+.|.  .+.|++|+.|.+|+|||+++++++.++ ..|...|..+.|
T Consensus       211 VSGlrDnTikiWD--~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf  285 (499)
T KOG0281|consen  211 VSGLRDNTIKIWD--KNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRF  285 (499)
T ss_pred             hcccccCceEEec--cccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEE
Confidence            3456688999999  67788899999999999999985  469999999999999999999999998 799999999999


Q ss_pred             eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 004685          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (737)
Q Consensus       102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~  181 (737)
                      +.    .++++++.|.++.+||+..+..       ......+.+|...|+.+.|+.   +++++++.|++|++|++.+.+
T Consensus       286 ~n----g~mvtcSkDrsiaVWdm~sps~-------it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~e  351 (499)
T KOG0281|consen  286 SN----GYMVTCSKDRSIAVWDMASPTD-------ITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCE  351 (499)
T ss_pred             eC----CEEEEecCCceeEEEeccCchH-------HHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEecccee
Confidence            86    4899999999999999987543       233577889999999999953   699999999999999999886


Q ss_pred             CCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCC
Q 004685          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (737)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (737)
                      .                         +....+|...|.|+++.   ++++++|+.|.+|++||+..+..+..+       
T Consensus       352 f-------------------------vRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvL-------  396 (499)
T KOG0281|consen  352 F-------------------------VRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVL-------  396 (499)
T ss_pred             e-------------------------ehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHH-------
Confidence            3                         34455777888888775   579999999999999999988755544       


Q ss_pred             CCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                                   .||.. -|.++.|  |.+.+++|+.||+|++||+..+
T Consensus       397 -------------eGHEe-LvRciRF--d~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  397 -------------EGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             -------------hchHH-hhhheee--cCceeeeccccceEEEEecccc
Confidence                         44555 4899999  6678999999999999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.9e-26  Score=269.46  Aligned_cols=188  Identities=15%  Similarity=0.240  Sum_probs=142.9

Q ss_pred             CCcEEEEECCCCeEEEEEc----ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccC
Q 004685           71 DTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH  146 (737)
Q Consensus        71 dg~V~vwd~~~~~~~~~~~----~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h  146 (737)
                      +|.+++|+.........+.    ..|...|.+++|+|+  +++|++|+.|+.|+||++........  ....+...+. +
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~d--g~~latgg~D~~I~iwd~~~~~~~~~--~~~~~~~~~~-~  531 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRD--GEFFATAGVNKKIKIFECESIIKDGR--DIHYPVVELA-S  531 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCC--CCEEEEEeCCCEEEEEECCccccccc--ccccceEEec-c
Confidence            6778999988766544432    348899999999999  79999999999999999864211000  0001223333 3


Q ss_pred             CCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004685          147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (737)
Q Consensus       147 ~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (737)
                      ...+.+++|++..+.+|++++.||+|++||+.+++.                         +.....|...|++++|+|.
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-------------------------~~~~~~H~~~V~~l~~~p~  586 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-------------------------VTEMKEHEKRVWSIDYSSA  586 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-------------------------EEEecCCCCCEEEEEEcCC
Confidence            567999999986678999999999999999987642                         2233467889999999986


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc-CCCCEEEEEeCCCeEEE
Q 004685          227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYL  305 (737)
Q Consensus       227 ~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s-p~g~~l~~g~~dg~v~i  305 (737)
                      ++.+|++|+.|+.|++||++++..+..+.                    .+  ..+.++.|+ ++|.+|++|+.||.|++
T Consensus       587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--------------------~~--~~v~~v~~~~~~g~~latgs~dg~I~i  644 (793)
T PLN00181        587 DPTLLASGSDDGSVKLWSINQGVSIGTIK--------------------TK--ANICCVQFPSESGRSLAFGSADHKVYY  644 (793)
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEEEEEe--------------------cC--CCeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence            57899999999999999998765443321                    11  148899995 57999999999999999


Q ss_pred             EEcCC
Q 004685          306 MDVNH  310 (737)
Q Consensus       306 wd~~~  310 (737)
                      ||+.+
T Consensus       645 wD~~~  649 (793)
T PLN00181        645 YDLRN  649 (793)
T ss_pred             EECCC
Confidence            99876

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=2.9e-27  Score=234.01  Aligned_cols=253  Identities=17%  Similarity=0.238  Sum_probs=214.5

Q ss_pred             CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004685           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~  101 (737)
                      ..+..++.+++|+   ....++.+|..|+++|.+|.|+..|.+|++++.|+++.|||..+++..+.| ..|..+-.+|.|
T Consensus       251 atG~~~G~~riw~---~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW  326 (524)
T KOG0273|consen  251 ATGSEDGEARIWN---KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDW  326 (524)
T ss_pred             EEeecCcEEEEEe---cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEE
Confidence            3466788899998   456778899999999999999999999999999999999999999998888 789888899999


Q ss_pred             eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 004685          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (737)
Q Consensus       102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~  181 (737)
                      -.+   +-|++++.|+.|+++.+...          .|..++.+|.++|.++.|+| .+.+|++++.|+++++|......
T Consensus       327 ~~~---~~F~ts~td~~i~V~kv~~~----------~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~  392 (524)
T KOG0273|consen  327 QSN---DEFATSSTDGCIHVCKVGED----------RPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSN  392 (524)
T ss_pred             ecC---ceEeecCCCceEEEEEecCC----------CcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCc
Confidence            987   78999999999999999852          45888999999999999999 56899999999999999987765


Q ss_pred             CCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC--------CcEEEEEeCCCcEEEEECCCCCCccc
Q 004685          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--------PHLLLVGGSDAFARLYDRRMLPPLTS  253 (737)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--------~~~l~t~s~Dg~i~iwd~~~~~~~~~  253 (737)
                      .                         +..+..|...|..+.|+|.+        +..+++++.|++|++||+..+.++..
T Consensus       393 ~-------------------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~  447 (524)
T KOG0273|consen  393 S-------------------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT  447 (524)
T ss_pred             c-------------------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence            2                         33445677788888888763        45799999999999999999987776


Q ss_pred             ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004685          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (737)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (737)
                      +.                    .|.. +|.+++|+|+|+|+++|+.||.|.+|+.++++ ....+..+..+..++|+-.+
T Consensus       448 f~--------------------kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~-l~~s~~~~~~Ifel~Wn~~G  505 (524)
T KOG0273|consen  448 LM--------------------KHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK-LVKSYQGTGGIFELCWNAAG  505 (524)
T ss_pred             ec--------------------cCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchh-eeEeecCCCeEEEEEEcCCC
Confidence            53                    2333 69999999999999999999999999999965 45555556668889999887


Q ss_pred             CCccCC
Q 004685          334 NGLELQ  339 (737)
Q Consensus       334 ~~~~~~  339 (737)
                      ..+...
T Consensus       506 ~kl~~~  511 (524)
T KOG0273|consen  506 DKLGAC  511 (524)
T ss_pred             CEEEEE
Confidence            655443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-27  Score=252.23  Aligned_cols=162  Identities=11%  Similarity=0.172  Sum_probs=139.9

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      ......|..++|+|.  ...++++-..|.|.+||.+-..          .+..+..|.++|..+.|+| ...++++|+.|
T Consensus         6 EskSsRvKglsFHP~--rPwILtslHsG~IQlWDYRM~t----------li~rFdeHdGpVRgv~FH~-~qplFVSGGDD   72 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPK--RPWILTSLHSGVIQLWDYRMGT----------LIDRFDEHDGPVRGVDFHP-TQPLFVSGGDD   72 (1202)
T ss_pred             hcccccccceecCCC--CCEEEEeecCceeeeehhhhhh----------HHhhhhccCCccceeeecC-CCCeEEecCCc
Confidence            456788999999999  6899999999999999998532          3778899999999999999 55799999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      -.|++|+..+.+                         .+.+..+|-..|..+.|++.- -+++++|+|.+||||+..+.+
T Consensus        73 ykIkVWnYk~rr-------------------------clftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~  126 (1202)
T KOG0292|consen   73 YKIKVWNYKTRR-------------------------CLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRK  126 (1202)
T ss_pred             cEEEEEecccce-------------------------ehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCc
Confidence            999999998865                         355667888999999999975 599999999999999999887


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .+..+                    .||.. .|.|..|+|....+++++-|.+|+|||+.-.
T Consensus       127 ~iavl--------------------tGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisGL  167 (1202)
T KOG0292|consen  127 CIAVL--------------------TGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISGL  167 (1202)
T ss_pred             eEEEE--------------------ecCce-EEEeeccCCccceEEEecccceEEEEeecch
Confidence            65544                    33444 4999999999999999999999999999864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=8.1e-27  Score=253.30  Aligned_cols=165  Identities=22%  Similarity=0.375  Sum_probs=138.8

Q ss_pred             cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004685           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (737)
Q Consensus        91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg  170 (737)
                      .+...|.++.|+|+  |..+++++.|+.+++|+......        .....+.+|...|.+++|+| ++.++++++.|+
T Consensus       157 ~~~~sv~~~~fs~~--g~~l~~~~~~~~i~~~~~~~~~~--------~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~  225 (456)
T KOG0266|consen  157 HECPSVTCVDFSPD--GRALAAASSDGLIRIWKLEGIKS--------NLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDK  225 (456)
T ss_pred             cccCceEEEEEcCC--CCeEEEccCCCcEEEeecccccc--------hhhccccccccceeeeEECC-CCcEEEEecCCc
Confidence            34788999999999  79999999999999999954221        12455688999999999999 668999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004685          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (737)
Q Consensus       171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~  250 (737)
                      +|++||+....                        ..+....+|...|++++|+|.+ +++++|+.|++|+|||+++++.
T Consensus       226 tiriwd~~~~~------------------------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~  280 (456)
T KOG0266|consen  226 TLRIWDLKDDG------------------------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC  280 (456)
T ss_pred             eEEEeeccCCC------------------------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE
Confidence            99999994442                        1244556889999999999985 9999999999999999999776


Q ss_pred             cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      +..+                    .+|.. .|++++|++++.+|++++.|+.|++||+.++.
T Consensus       281 ~~~l--------------------~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  281 VRKL--------------------KGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             EEee--------------------eccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence            5554                    33554 69999999999999999999999999999854

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=7e-27  Score=233.33  Aligned_cols=234  Identities=18%  Similarity=0.244  Sum_probs=176.3

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEEcccCccceEEEEEeeCCCCCEEEEEECC
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d  116 (737)
                      .....|++|+..|.++++.|.|-+|++|+.|..|++||+....    ..+.+.......|.+++|++.  ++.|++.+..
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg~  235 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT--GDQILVVSGS  235 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC--CCeEEEEecC
Confidence            4456788999999999999999999999999999999998643    334444566788999999999  6888888888


Q ss_pred             CcEEEEecCCCCCCC--CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685          117 AEVRLFNLSRFSGRG--LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       117 g~I~iwd~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                      ...+|+|-.-.....  ....++.-+...++|...++|.+|+|.+...++|++.||++++||+...+...          
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~----------  305 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL----------  305 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe----------
Confidence            889999865322111  11222334566789999999999999998999999999999999999876331          


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (737)
                      .++..         ....+....++.|+|+|+ +.+||+|+.||.|.+|+.+.......+           .....|.  
T Consensus       306 qVik~---------k~~~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~~-----------~vk~AH~--  362 (641)
T KOG0772|consen  306 QVIKT---------KPAGGKRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPVM-----------KVKDAHL--  362 (641)
T ss_pred             eEEee---------ccCCCcccCceeeecCCC-cchhhhcccCCceeeeecCCcccccce-----------EeeeccC--
Confidence            11111         111134567899999998 589999999999999998654321111           1111111  


Q ss_pred             CCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       275 ~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                         .+..|++|+||++|++|++-+.|+.+++||++..+
T Consensus       363 ---~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  363 ---PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             ---CCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence               11249999999999999999999999999999854

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.4e-26  Score=211.50  Aligned_cols=230  Identities=15%  Similarity=0.226  Sum_probs=188.3

Q ss_pred             cCCCCCccccccccccc-ccccccceeec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEEcccCccc
Q 004685           20 TDTRPDVNHSLQMHSSL-VRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSAN   95 (737)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~--~~~~~~~~~h~~~   95 (737)
                      +..+.+.++.|++|+.. ..+......|. +|+..|.+++|+|.|++||+|+.|.++.||.-..+  +++.++ .+|...
T Consensus        29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnE  107 (312)
T KOG0645|consen   29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL-EGHENE  107 (312)
T ss_pred             EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee-eccccc
Confidence            45667889999999965 45566666664 69999999999999999999999999999987654  577778 899999


Q ss_pred             eEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004685           96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (737)
Q Consensus        96 V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw  175 (737)
                      |.|++|+++  |++||+|+.|..|-||.+....       .+++...+..|+..|..+.|+| ...+|+++++|.+|++|
T Consensus       108 VK~Vaws~s--G~~LATCSRDKSVWiWe~dedd-------Efec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~  177 (312)
T KOG0645|consen  108 VKCVAWSAS--GNYLATCSRDKSVWIWEIDEDD-------EFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVY  177 (312)
T ss_pred             eeEEEEcCC--CCEEEEeeCCCeEEEEEecCCC-------cEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEE
Confidence            999999999  8999999999999999998432       2567889999999999999999 66899999999999999


Q ss_pred             EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (737)
Q Consensus       176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~  255 (737)
                      .-....                      .-..+....+|...|.+++|++. +..|++++.|++++||-+.+.-+     
T Consensus       178 ~~~~dd----------------------dW~c~~tl~g~~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~~~~-----  229 (312)
T KOG0645|consen  178 RDEDDD----------------------DWECVQTLDGHENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYTDLS-----  229 (312)
T ss_pred             eecCCC----------------------CeeEEEEecCccceEEEEEecCC-CceEEEecCCcceEeeeeccCcc-----
Confidence            866321                      11224445567789999999997 58999999999999998653210     


Q ss_pred             CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                                         ..|.. .+..++|.  ...|++++.|+.|++|.-..
T Consensus       230 -------------------~~~sr-~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  230 -------------------GMHSR-ALYDVPWD--NGVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             -------------------hhccc-ceEeeeec--ccceEeccCCCEEEEEEecC
Confidence                               11222 58889998  45699999999999997553

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.4e-26  Score=248.29  Aligned_cols=195  Identities=22%  Similarity=0.338  Sum_probs=166.5

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-EcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~-~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                      |...+.+..|+  ..++++++.|.+|.+||..++..+.. + .+|.+.|.++++...  +.+|++|+.|.++++||..++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l-~GH~g~V~~l~~~~~--~~~lvsgS~D~t~rvWd~~sg  281 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRL-VGHFGGVWGLAFPSG--GDKLVSGSTDKTERVWDCSTG  281 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeec-cCCCCCceeEEEecC--CCEEEEEecCCcEEeEecCCC
Confidence            56678888888  67899999999999999999998888 7 899999999999985  689999999999999998763


Q ss_pred             CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                                .+..++.+|.+.|.++...+   .++++|+.|.+|++|++.++..                         
T Consensus       282 ----------~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~-------------------------  323 (537)
T KOG0274|consen  282 ----------ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGAC-------------------------  323 (537)
T ss_pred             ----------cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcce-------------------------
Confidence                      33788999999999999854   6788999999999999997763                         


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                      +....+|..+|.++..+   +.++++|+.|+.|++||+.+++.++.+                    .+|.. .|.++.+
T Consensus       324 l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl--------------------~gH~~-~V~sl~~  379 (537)
T KOG0274|consen  324 LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSL--------------------SGHTG-RVYSLIV  379 (537)
T ss_pred             EEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeee--------------------cCCcc-eEEEEEe
Confidence            22233478899999998   369999999999999999988766554                    34544 6999988


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          288 SPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       288 sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .+. .++++|+.|+.|++||+.+.
T Consensus       380 ~~~-~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  380 DSE-NRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             cCc-ceEEeeeeccceEeecCCch
Confidence            776 88999999999999999883

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.1e-26  Score=210.13  Aligned_cols=256  Identities=21%  Similarity=0.260  Sum_probs=216.4

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      -+.++++++|.  ..+..+++++.||...|..++.+.|...+++|+.|..|.+||+.+|+.+..| .+|...|+.++|+.
T Consensus        35 cGsdrtvrLWN--p~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNe  111 (307)
T KOG0316|consen   35 CGSDRTVRLWN--PLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNE  111 (307)
T ss_pred             cCCCceEEeec--ccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecC
Confidence            45688999999  6678899999999999999999999999999999999999999999999999 89999999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      +  ...+++|+.|.++++||.+...        .+|++.+..-.+.|.++...   .+.|++|+.||+++.||++.+...
T Consensus       112 e--sSVv~SgsfD~s~r~wDCRS~s--------~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~  178 (307)
T KOG0316|consen  112 E--SSVVASGSFDSSVRLWDCRSRS--------FEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLS  178 (307)
T ss_pred             c--ceEEEeccccceeEEEEcccCC--------CCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceee
Confidence            8  5899999999999999999744        46789998889999999984   478999999999999999998733


Q ss_pred             CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (737)
                      .                         .  -...+|++++|+++ ++..++++.|+++++.|..+++.+..+...      
T Consensus       179 s-------------------------D--y~g~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sYkGh------  224 (307)
T KOG0316|consen  179 S-------------------------D--YFGHPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSYKGH------  224 (307)
T ss_pred             h-------------------------h--hcCCcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHhccc------
Confidence            1                         0  12357999999997 689999999999999999999877665321      


Q ss_pred             ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCC-CeeeeeccCCCCccCCCCC
Q 004685          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA-SKIMSFTPTLNGLELQPPI  342 (737)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~  342 (737)
                                  .... .-..+++......+++|+.||.|++||+........+..++.+ +..+.++|....+-.....
T Consensus       225 ------------kn~e-ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~  291 (307)
T KOG0316|consen  225 ------------KNME-YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH  291 (307)
T ss_pred             ------------ccce-eeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC
Confidence                        1111 2456778888899999999999999999998777666666666 7889999987665544433

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=5.7e-26  Score=218.34  Aligned_cols=245  Identities=13%  Similarity=0.147  Sum_probs=188.9

Q ss_pred             ccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccce
Q 004685           17 TRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV   96 (737)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V   96 (737)
                      ..-+..+++.+..--+|+  +.+.....++.||+..|+|+.|+.+|.+||||+.+|.|+||...++.....+ ......|
T Consensus        75 ~~~l~aTGGgDD~AflW~--~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~-~~e~~di  151 (399)
T KOG0296|consen   75 NNNLVATGGGDDLAFLWD--ISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL-DQEVEDI  151 (399)
T ss_pred             CCceEEecCCCceEEEEE--ccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe-ecccCce
Confidence            444566677777888899  5666689999999999999999999999999999999999999999988888 4456778


Q ss_pred             EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (737)
Q Consensus        97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd  176 (737)
                      .=+.|+|.  +.+|+.|+.||.+.+|.+...          ...+.+.+|..++++-.|.| +++.++++..||+|++||
T Consensus       152 eWl~WHp~--a~illAG~~DGsvWmw~ip~~----------~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn  218 (399)
T KOG0296|consen  152 EWLKWHPR--AHILLAGSTDGSVWMWQIPSQ----------ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWN  218 (399)
T ss_pred             EEEEeccc--ccEEEeecCCCcEEEEECCCc----------ceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEe
Confidence            88999998  799999999999999999863          12678999999999999999 568888999999999999


Q ss_pred             cCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccC
Q 004685          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (737)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~  256 (737)
                      +.++.+...+                      ...  ......++.++.. +..++.|+.++.+++-+..+++.+.....
T Consensus       219 ~ktg~p~~~~----------------------~~~--e~~~~~~~~~~~~-~~~~~~g~~e~~~~~~~~~sgKVv~~~n~  273 (399)
T KOG0296|consen  219 PKTGQPLHKI----------------------TQA--EGLELPCISLNLA-GSTLTKGNSEGVACGVNNGSGKVVNCNNG  273 (399)
T ss_pred             cCCCceeEEe----------------------ccc--ccCcCCccccccc-cceeEeccCCccEEEEccccceEEEecCC
Confidence            9998754111                      000  0234566777775 67899999999999988887775543321


Q ss_pred             CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      .          .+.-...+.+....|..+.|+..-.+.++|+-||+|-|||+.+..
T Consensus       274 ~----------~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~  319 (399)
T KOG0296|consen  274 T----------VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST  319 (399)
T ss_pred             C----------CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence            0          011111122222235555666677888999999999999999854

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=5.4e-25  Score=203.00  Aligned_cols=239  Identities=20%  Similarity=0.323  Sum_probs=190.3

Q ss_pred             eecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        45 ~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      -|+||..+++.+.++.+|.+|++|+.|.++.||-..+|+.+.++ .+|.+.|+|+....+  ...+++|+.|.+++|||+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~--s~~liTGSAD~t~kLWDv   81 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWD--SKHLITGSADQTAKLWDV   81 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCC--cceeeeccccceeEEEEc
Confidence            47899999999999999999999999999999999999999999 899999999999998  589999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe-----CCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-----~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      .++..          +..++ -..+|..+.|++ ++++++.+.     ..+.|.++|++.....    ....+       
T Consensus        82 ~tGk~----------la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~----~~s~e-------  138 (327)
T KOG0643|consen   82 ETGKQ----------LATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSD----IDSEE-------  138 (327)
T ss_pred             CCCcE----------EEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhh----hcccC-------
Confidence            97542          44444 567899999999 556665554     3467999999865411    00000       


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                             .+...+.+...++.+-|.|. +..|++|..||.|.+||++++..+....                   ..|..
T Consensus       139 -------p~~kI~t~~skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~v~s~-------------------~~h~~  191 (327)
T KOG0643|consen  139 -------PYLKIPTPDSKITSALWGPL-GETIIAGHEDGSISIYDARTGKELVDSD-------------------EEHSS  191 (327)
T ss_pred             -------ceEEecCCccceeeeeeccc-CCEEEEecCCCcEEEEEcccCceeeech-------------------hhhcc
Confidence                   01111223467899999997 5899999999999999999875432211                   11333


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  338 (737)
                       .|+.+.++||..++++++.|.+.++||+.+. ...+.+....|++..+++|....+.+
T Consensus       192 -~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~te~PvN~aaisP~~d~Vil  248 (327)
T KOG0643|consen  192 -KINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYTTERPVNTAAISPLLDHVIL  248 (327)
T ss_pred             -ccccccccCCcceEEecccCccceeeeccce-eeEEEeeecccccceecccccceEEe
Confidence             5999999999999999999999999999995 46677788899999999997654433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.94  E-value=3.7e-25  Score=226.75  Aligned_cols=164  Identities=24%  Similarity=0.393  Sum_probs=131.6

Q ss_pred             EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004685           86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  165 (737)
Q Consensus        86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  165 (737)
                      ..+ .+|..+|.+++|+|+  +.+|++++.||.|++|++....          ....+..|...+..+.|+| ++.++++
T Consensus         3 ~~~-~~h~~~i~~~~~~~~--~~~l~~~~~~g~i~i~~~~~~~----------~~~~~~~~~~~i~~~~~~~-~~~~l~~   68 (289)
T cd00200           3 RTL-KGHTGGVTCVAFSPD--GKLLATGSGDGTIKVWDLETGE----------LLRTLKGHTGPVRDVAASA-DGTYLAS   68 (289)
T ss_pred             hHh-cccCCCEEEEEEcCC--CCEEEEeecCcEEEEEEeeCCC----------cEEEEecCCcceeEEEECC-CCCEEEE
Confidence            345 589999999999999  7999999999999999998532          2566778889999999999 4578999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~  245 (737)
                      ++.|+.|++||+...+..                         .....+...+.++.|+|+ +.++++++.|+.|++||+
T Consensus        69 ~~~~~~i~i~~~~~~~~~-------------------------~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~  122 (289)
T cd00200          69 GSSDKTIRLWDLETGECV-------------------------RTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDV  122 (289)
T ss_pred             EcCCCeEEEEEcCcccce-------------------------EEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEEC
Confidence            999999999999875422                         112245567999999997 578888888999999999


Q ss_pred             CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      ++.+....+.                    .+.. .|.+++|+|++.++++++.++.|++||+.+
T Consensus       123 ~~~~~~~~~~--------------------~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~  166 (289)
T cd00200         123 ETGKCLTTLR--------------------GHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRT  166 (289)
T ss_pred             CCcEEEEEec--------------------cCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence            8665443321                    1222 599999999999888888899999999875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=8.9e-24  Score=189.91  Aligned_cols=223  Identities=17%  Similarity=0.314  Sum_probs=159.3

Q ss_pred             ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC------C--------eEEEEEcccCccceEEEEEeeC
Q 004685           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------R--------KLLHSIETGHSANVFCTKFVPE  104 (737)
Q Consensus        39 ~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~------~--------~~~~~~~~~h~~~V~~v~~sp~  104 (737)
                      .++.+.+|. .+.+|.+++|+|.|.+.|.|+..++++|--...      +        ..+.+-.+.|.+.|.|.+|+|.
T Consensus        22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            345555554 567899999999999999999999999865421      1        1122222568999999999999


Q ss_pred             CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC---CCcEEEEEeC-CCcEEEEEcCCC
Q 004685          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASE-DGTLRQHDFRQG  180 (737)
Q Consensus       105 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~~l~s~s~-Dg~I~vwdl~~~  180 (737)
                        |.++++|+.|.+|++..++.......     -+-..+.-|.+.|..++|..+   ++.+|++++. |..|.+-|...+
T Consensus       101 --geliatgsndk~ik~l~fn~dt~~~~-----g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g  173 (350)
T KOG0641|consen  101 --GELIATGSNDKTIKVLPFNADTCNAT-----GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG  173 (350)
T ss_pred             --cCeEEecCCCceEEEEeccccccccc-----CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence              89999999999999988875433221     223456779999999999642   3457777654 566666666665


Q ss_pred             CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEE-EEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC
Q 004685          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC-DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (737)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~  259 (737)
                      +.                         +....+|.+.|.++ .|+   +-++++|+.|.+||+||++-...+..+...  
T Consensus       174 ~~-------------------------~~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~--  223 (350)
T KOG0641|consen  174 QG-------------------------FHALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDND--  223 (350)
T ss_pred             Cc-------------------------ceeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCc--
Confidence            52                         22334556666554 343   579999999999999999976544333211  


Q ss_pred             CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                                  ....|-....|..++..|.|++|++|-.|....+||++-+
T Consensus       224 ------------~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~  263 (350)
T KOG0641|consen  224 ------------FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG  263 (350)
T ss_pred             ------------ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence                        1112222336999999999999999999999999998863

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=9.6e-26  Score=245.51  Aligned_cols=242  Identities=15%  Similarity=0.215  Sum_probs=192.1

Q ss_pred             eccc-CCceEEEEEcCCCCEEEEEe--CCCcEEEEECCC------------CeEEEEEcccCccceEEEEEeeCCCCCEE
Q 004685           46 LEGH-QGCVNAISWNSKGSLLISGS--DDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELV  110 (737)
Q Consensus        46 l~~H-~~~V~~l~~s~~g~~lasgs--~dg~V~vwd~~~------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l  110 (737)
                      +-+| ...|.+++.+|+|..+|||+  .|+.++||+.+.            .+.+.+. ..|.+.|+|+.|+|+  |.+|
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~d--G~~l   84 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPD--GSYL   84 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCC--CCeE
Confidence            4445 45799999999999999999  899999998752            2234445 679999999999999  8999


Q ss_pred             EEEECCCcEEEEecCCC-C-------CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          111 VSGAGDAEVRLFNLSRF-S-------GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       111 ~sgs~dg~I~iwd~~~~-~-------~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                      |+|+.|+.|.||..... .       +...+...++....+.+|...|..+.|+| ++.+|++++.|++|.+|+.++.+.
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~  163 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFEL  163 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccccee
Confidence            99999999999998830 0       11122334566788899999999999999 679999999999999999998742


Q ss_pred             CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCC
Q 004685          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (737)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (737)
                                               +....+|...|..+.|+|- +++||+-++|++|+||++.+....+.+..++... 
T Consensus       164 -------------------------~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~-  216 (942)
T KOG0973|consen  164 -------------------------LKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES-  216 (942)
T ss_pred             -------------------------eeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccchhhC-
Confidence                                     4445678889999999997 6999999999999999987755444443222110 


Q ss_pred             CccccccccccCCCCcccceeEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (737)
                                    .-...+..+.|||||.+|++...    -.++.|.+-.+.+....+.+|..++.++.|+|.
T Consensus       217 --------------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~  276 (942)
T KOG0973|consen  217 --------------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK  276 (942)
T ss_pred             --------------CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence                          00113888999999999999866    347888888877777888889889999999994

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=223.80  Aligned_cols=200  Identities=18%  Similarity=0.307  Sum_probs=166.0

Q ss_pred             CCceEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685           50 QGCVNAISWNSKGS--LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        50 ~~~V~~l~~s~~g~--~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                      ..+|.+++|+|...  +.+|+|  -.+.||+..+....+++ ......|.++.|-.|  |.+|++|...|.|+|||+.+.
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~D--G~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRSD--GRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhH-HhhccceeEEEeecC--CeEEEccCCcCcEEEeccccH
Confidence            36899999999543  333444  47999999988888777 567889999999999  899999999999999996641


Q ss_pred             CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                                ..+..+.+|+.++..+.|+|++...|++|+.|+.+++||+.+..                         .
T Consensus       101 ----------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-------------------------v  145 (487)
T KOG0310|consen  101 ----------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-------------------------V  145 (487)
T ss_pred             ----------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-------------------------E
Confidence                      23788899999999999999998999999999999999998864                         1


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  286 (737)
                      .....+|+..|.|.+|+|.++.++++|+.||.||+||++.. ..+.++                      .++.+|.++.
T Consensus       146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el----------------------nhg~pVe~vl  203 (487)
T KOG0310|consen  146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL----------------------NHGCPVESVL  203 (487)
T ss_pred             EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe----------------------cCCCceeeEE
Confidence            33445789999999999988889999999999999999976 333222                      2333699999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          287 FSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       287 ~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      +-|.|..|+++++. .|++||+.++.
T Consensus       204 ~lpsgs~iasAgGn-~vkVWDl~~G~  228 (487)
T KOG0310|consen  204 ALPSGSLIASAGGN-SVKVWDLTTGG  228 (487)
T ss_pred             EcCCCCEEEEcCCC-eEEEEEecCCc
Confidence            99999988888776 99999999864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.9e-25  Score=228.28  Aligned_cols=194  Identities=18%  Similarity=0.284  Sum_probs=156.3

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCC
Q 004685           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (737)
Q Consensus        55 ~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~  134 (737)
                      =+.|+ ..+.||.|.. ..|.+|+..+++..... ..+...|+++.|+++  |.+|+.|..+|.|.|||......     
T Consensus       182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~-~~~~~~vtSv~ws~~--G~~LavG~~~g~v~iwD~~~~k~-----  251 (484)
T KOG0305|consen  182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELC-SFGEELVTSVKWSPD--GSHLAVGTSDGTVQIWDVKEQKK-----  251 (484)
T ss_pred             Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeE-ecCCCceEEEEECCC--CCEEEEeecCCeEEEEehhhccc-----
Confidence            35677 4456776654 48999999998866555 445899999999999  89999999999999999986332     


Q ss_pred             CCCCCceeecc-CCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC
Q 004685          135 NAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  213 (737)
Q Consensus       135 ~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (737)
                           +..+.. |...|.+++|.   ...+.+|+.|+.|..+|++..+..                        +.....
T Consensus       252 -----~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~------------------------~~~~~~  299 (484)
T KOG0305|consen  252 -----TRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHV------------------------VSTLQG  299 (484)
T ss_pred             -----cccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhh------------------------hhhhhc
Confidence                 566666 99999999996   478889999999999999988643                        112456


Q ss_pred             CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCC
Q 004685          214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGE  292 (737)
Q Consensus       214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~  292 (737)
                      |...|..++|+++ +.++|+|+.|+.+.|||.....+...+                    ..|.. .|..++|+| ...
T Consensus       300 H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~~~--------------------~~H~a-AVKA~awcP~q~~  357 (484)
T KOG0305|consen  300 HRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKFTF--------------------TEHTA-AVKALAWCPWQSG  357 (484)
T ss_pred             ccceeeeeEECCC-CCeeccCCCccceEeccCCCccccEEE--------------------eccce-eeeEeeeCCCccC
Confidence            8899999999998 689999999999999999665544333                    22443 699999999 567


Q ss_pred             EEEEEeC--CCeEEEEEcCCCC
Q 004685          293 EVLLSYS--GEHVYLMDVNHAG  312 (737)
Q Consensus       293 ~l~~g~~--dg~v~iwd~~~~~  312 (737)
                      .||+|++  |++|++||..++.
T Consensus       358 lLAsGGGs~D~~i~fwn~~~g~  379 (484)
T KOG0305|consen  358 LLATGGGSADRCIKFWNTNTGA  379 (484)
T ss_pred             ceEEcCCCcccEEEEEEcCCCc
Confidence            7888876  9999999999854

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.8e-26  Score=211.29  Aligned_cols=228  Identities=18%  Similarity=0.279  Sum_probs=194.9

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s  102 (737)
                      ..-++++++|+ +....+++..++.|...|.++.|++ +++.+++++.|++|++|+......+.+| .+|...|...+|+
T Consensus        79 a~GDGSLrl~d-~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~s  156 (311)
T KOG0277|consen   79 ASGDGSLRLFD-LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFS  156 (311)
T ss_pred             EecCceEEEec-cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecC
Confidence            44579999999 7777789999999999999999999 6677888899999999999999999999 8999999999999


Q ss_pred             eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                      |.. +++|++++.|+.+++||++....          ...+..|...|.|+.|+.-+.++++||+.|+.|++||++.-+.
T Consensus       157 p~~-~nlfas~Sgd~~l~lwdvr~~gk----------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~  225 (311)
T KOG0277|consen  157 PHI-PNLFASASGDGTLRLWDVRSPGK----------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT  225 (311)
T ss_pred             CCC-CCeEEEccCCceEEEEEecCCCc----------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc
Confidence            987 89999999999999999987532          2347889999999999998989999999999999999998763


Q ss_pred             CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCC
Q 004685          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (737)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (737)
                      +                        +....+|...|..++|+|....+|++++.|-++||||.........         
T Consensus       226 p------------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e---------  272 (311)
T KOG0277|consen  226 P------------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE---------  272 (311)
T ss_pred             c------------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh---------
Confidence            3                        4455678899999999999888999999999999999875432111         


Q ss_pred             CccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEc
Q 004685          263 CVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDV  308 (737)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~  308 (737)
                         .        ..++..-+..+.|++ ++.+++..+-|+.++||+.
T Consensus       273 ---~--------~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  273 ---T--------VDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ---h--------hhccceEEeccccccccCceeeecccccceeeecc
Confidence               1        112222478899997 6778999999999999984

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.4e-24  Score=204.67  Aligned_cols=202  Identities=11%  Similarity=0.168  Sum_probs=155.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC
Q 004685           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (737)
Q Consensus        53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~  132 (737)
                      -.|+.|++.|.+||.|..||.|.|||+.+...-..+ .+|..+|++++|+++  |.+|++++.|..|.+||+..+..   
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs~---   99 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGSP---   99 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCC--CCEeeeecCCceeEEEeccCCCc---
Confidence            689999999999999999999999999998766666 899999999999999  89999999999999999997542   


Q ss_pred             CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCC
Q 004685          133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  212 (737)
Q Consensus       133 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (737)
                             ++.+. ..++|+.+.|+|.+.+..+++-.+..-.+-++......  ......+             ...    
T Consensus       100 -------l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~--~Lp~d~d-------------~dl----  152 (405)
T KOG1273|consen  100 -------LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS--VLPKDDD-------------GDL----  152 (405)
T ss_pred             -------eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee--eccCCCc-------------ccc----
Confidence                   44443 57899999999987777777766666666666653311  0000000             000    


Q ss_pred             CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC
Q 004685          213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  292 (737)
Q Consensus       213 ~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~  292 (737)
                        .....+..|.+. |+++++|...|.+.++|..+.+.+..+...                    ....|..+.|+..|+
T Consensus       153 --n~sas~~~fdr~-g~yIitGtsKGkllv~~a~t~e~vas~rit--------------------s~~~IK~I~~s~~g~  209 (405)
T KOG1273|consen  153 --NSSASHGVFDRR-GKYIITGTSKGKLLVYDAETLECVASFRIT--------------------SVQAIKQIIVSRKGR  209 (405)
T ss_pred             --ccccccccccCC-CCEEEEecCcceEEEEecchheeeeeeeec--------------------hheeeeEEEEeccCc
Confidence              011112246664 799999999999999999988765554211                    111488999999999


Q ss_pred             EEEEEeCCCeEEEEEcCC
Q 004685          293 EVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       293 ~l~~g~~dg~v~iwd~~~  310 (737)
                      +|++.+.|..|+.|+++.
T Consensus       210 ~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  210 FLIINTSDRVIRTYEISD  227 (405)
T ss_pred             EEEEecCCceEEEEehhh
Confidence            999999999999999885

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=2.1e-24  Score=233.10  Aligned_cols=230  Identities=17%  Similarity=0.291  Sum_probs=175.1

Q ss_pred             eeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe-------EEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685           44 RELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~-------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  115 (737)
                      ..+.||.+.|++++|+| ++++||+|+.|++|+|||+.++.       .+..+ .+|...|.+++|+|.. +++|++|+.
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~-~~iLaSgs~  146 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSA-MNVLASAGA  146 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCC-CCEEEEEeC
Confidence            35889999999999999 88999999999999999997652       45566 7899999999999984 579999999


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      |++|+|||+....          ....+.+|...|.+++|+| ++.+|++++.|+.|++||+++++.+            
T Consensus       147 DgtVrIWDl~tg~----------~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v------------  203 (493)
T PTZ00421        147 DMVVNVWDVERGK----------AVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIV------------  203 (493)
T ss_pred             CCEEEEEECCCCe----------EEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEE------------
Confidence            9999999998632          2567788999999999999 6689999999999999999987532            


Q ss_pred             EEEeccCCceeeccCCCCCcc-ceEEEEEecCCCcEEEEEe----CCCcEEEEECCCCCC-cccccCCCCCCCCcccccc
Q 004685          196 ILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVGG----SDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCP  269 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~~l~t~s----~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~  269 (737)
                                   .....|.. ....+.|.++. ..+++++    .|+.|++||++.... +...               
T Consensus       204 -------------~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~---------------  254 (493)
T PTZ00421        204 -------------SSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASPYSTV---------------  254 (493)
T ss_pred             -------------EEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCceeEe---------------
Confidence                         11112222 23456788865 4555543    479999999986542 1111               


Q ss_pred             ccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcceee-eecCCCCeeeeeccC
Q 004685          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMR-YTVGDASKIMSFTPT  332 (737)
Q Consensus       270 ~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~p~  332 (737)
                           ..+....+....|++++.+|++++ .|+.|++||+.++...... +....+...++|.|.
T Consensus       255 -----~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        255 -----DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             -----ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence                 001112366678999999999888 4999999999987643332 334567788888885

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.7e-24  Score=204.38  Aligned_cols=208  Identities=21%  Similarity=0.347  Sum_probs=166.1

Q ss_pred             cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (737)
Q Consensus        38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  117 (737)
                      -++.+...+..|.++|++++.+  +.++|+|+.|-+|+|||+.+...+..+ ..|.+.|+++.|.+..+.+.|++|+.||
T Consensus        31 ~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG  107 (362)
T KOG0294|consen   31 PTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDG  107 (362)
T ss_pred             eeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCCcchhheeeecCCC
Confidence            3456678899999999999974  899999999999999999999988888 6899999999999985445899999999


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      .|.+|+...          +..+..+++|...|+.++++| .+++.++.+.|+.++.||+-.++..            .+
T Consensus       108 ~i~iw~~~~----------W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a------------~v  164 (362)
T KOG0294|consen  108 HIIIWRVGS----------WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVA------------FV  164 (362)
T ss_pred             cEEEEEcCC----------eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccc------------ee
Confidence            999999986          456889999999999999999 6688889999999999999988632            01


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (737)
                      ..        +      ......+.|+|. +.+|+.++.+ .|-+|.+.+.+.+..+..                     
T Consensus       165 ~~--------L------~~~at~v~w~~~-Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~---------------------  207 (362)
T KOG0294|consen  165 LN--------L------KNKATLVSWSPQ-GDHFVVSGRN-KIDIYQLDNASVFREIEN---------------------  207 (362)
T ss_pred             ec--------c------CCcceeeEEcCC-CCEEEEEecc-EEEEEecccHhHhhhhhc---------------------
Confidence            10        0      122344899997 5777777764 588999887665443321                     


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       278 ~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                       ...+.++.|- ++.+|++|..|+.|.+||..+
T Consensus       208 -~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds  238 (362)
T KOG0294|consen  208 -PKRILCATFL-DGSELLVGGDNEWISLKDTDS  238 (362)
T ss_pred             -cccceeeeec-CCceEEEecCCceEEEeccCC
Confidence             0136666665 566799999999999999775

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=6.1e-24  Score=229.60  Aligned_cols=210  Identities=15%  Similarity=0.123  Sum_probs=159.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-------------EEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-------------SIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~-------------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  117 (737)
                      ..|+....++++..+++++.+.....|+...+..+.             .+ .+|.+.|.+++|+|.. +.+|++|+.|+
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d-~~~LaSgS~Dg   98 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFD-PQKLFTASEDG   98 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCC-CCEEEEEeCCC
Confidence            456666677777777888777777788765543221             23 6899999999999932 68999999999


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      +|++||+......   .....++..+.+|...|.+++|+|...++|++++.|++|++||++++...              
T Consensus        99 tIkIWdi~~~~~~---~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~--------------  161 (493)
T PTZ00421         99 TIMGWGIPEEGLT---QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV--------------  161 (493)
T ss_pred             EEEEEecCCCccc---cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE--------------
Confidence            9999999753210   01123467788999999999999966689999999999999999876521              


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (737)
                                 .....|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+                    .+|
T Consensus       162 -----------~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl--------------------~~H  209 (493)
T PTZ00421        162 -----------EVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSV--------------------EAH  209 (493)
T ss_pred             -----------EEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEEEE--------------------ecC
Confidence                       122346678999999997 689999999999999999987654433                    123


Q ss_pred             cccceeEEEEcCCCCEEEEEe----CCCeEEEEEcCCC
Q 004685          278 SSLHLTHVTFSPNGEEVLLSY----SGEHVYLMDVNHA  311 (737)
Q Consensus       278 ~~~~i~~v~~sp~g~~l~~g~----~dg~v~iwd~~~~  311 (737)
                      ....+..+.|.+++..+++++    .|+.|++||+++.
T Consensus       210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence            332355788999888887765    3789999998863

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=7.5e-25  Score=224.44  Aligned_cols=230  Identities=18%  Similarity=0.235  Sum_probs=157.3

Q ss_pred             EEEEcC---CCCEEEEEeCCCcEEEEECCCCeEE------EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685           55 AISWNS---KGSLLISGSDDTHINVWSYSSRKLL------HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        55 ~l~~s~---~g~~lasgs~dg~V~vwd~~~~~~~------~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~  125 (737)
                      +..|++   ....|+.+..||.|.++|.......      ..+ ..|...|..++|.|.  ..+|++++.|.++++||+.
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapg--e~~lVsasGDsT~r~Wdvk  130 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPG--ESLLVSASGDSTIRPWDVK  130 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCC--ceeEEEccCCceeeeeeec
Confidence            366765   3458999999999999998754322      333 689999999999996  7899999999999999999


Q ss_pred             CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC--
Q 004685          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG--  203 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~--  203 (737)
                      ......        ...+.+|...|.+++|.|.++..|++|+.||.|.+||++....-.    ....+. .++...++  
T Consensus       131 ~s~l~G--------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~----~e~~~~-~~~~~~n~~p  197 (720)
T KOG0321|consen  131 TSRLVG--------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA----LEEFDN-RIYGRHNTAP  197 (720)
T ss_pred             cceeec--------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh----HHHHhh-hhhccccCCC
Confidence            754322        345789999999999999999999999999999999998765110    000011 11111111  


Q ss_pred             -----ceeeccCCCCCccceEE---EEEecCCCcEEEEEeC-CCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004685          204 -----AKRSLADPPKQTLSLKS---CDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (737)
Q Consensus       204 -----~~~~~~~~~~~~~~v~~---i~~sp~~~~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (737)
                           ....+.....+...|.+   +-+..| ...||+++. |+.|+|||++...-......     .....+..     
T Consensus       198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep-----~~~~~~~t-----  266 (720)
T KOG0321|consen  198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQEP-----RGSDKYPT-----  266 (720)
T ss_pred             CCCchhhccccccccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeecccccccccCC-----CcccCccC-----
Confidence                 01112222223333333   334444 478898887 99999999997653332211     11111100     


Q ss_pred             CCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       275 ~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +......++++..+..|.+|++.+.|+.|++||+.+-
T Consensus       267 ~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~  303 (720)
T KOG0321|consen  267 HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL  303 (720)
T ss_pred             cccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence            1112224889999999999999999999999999873

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=1.5e-24  Score=228.66  Aligned_cols=253  Identities=16%  Similarity=0.203  Sum_probs=189.1

Q ss_pred             CcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeC
Q 004685           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (737)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~  104 (737)
                      ..++.+++|.  +++.+.+++++++...|+++.=+|-=..+|.|..+|+|.|+++..++.+.+|. ...+.|++++|..|
T Consensus       179 s~~G~lql~N--vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-~d~g~VtslSFrtD  255 (910)
T KOG1539|consen  179 SSQGRLQLWN--VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-QDWGRVTSLSFRTD  255 (910)
T ss_pred             ecCCcEEEEE--eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-ccccceeEEEeccC
Confidence            4467888988  88899999999999999999999988999999999999999999999999994 22599999999999


Q ss_pred             CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 004685          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (737)
Q Consensus       105 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~  184 (737)
                      + ..++++|+..|.+.+||+......         ......|.+.|....|.| +..++++++.|.++++|=..++.   
T Consensus       256 G-~p~las~~~~G~m~~wDLe~kkl~---------~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~d---  321 (910)
T KOG1539|consen  256 G-NPLLASGRSNGDMAFWDLEKKKLI---------NVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGD---  321 (910)
T ss_pred             C-CeeEEeccCCceEEEEEcCCCeee---------eeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCC---
Confidence            6 567888888999999999863221         233447889999999999 77899999999999999777554   


Q ss_pred             CCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccC--------
Q 004685          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK--------  256 (737)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~--------  256 (737)
                                        +..+.+..-.+|..+..++.|...++..+.+++.|++++.+++.....-+++..        
T Consensus       322 ------------------g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k  383 (910)
T KOG1539|consen  322 ------------------GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK  383 (910)
T ss_pred             ------------------CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence                              222334455678888889999876778899999999888887743321111111        


Q ss_pred             ----------CCCCCC-----------------------Cccccc------cccccCC---CCcccceeEEEEcCCCCEE
Q 004685          257 ----------RMSPPP-----------------------CVNYFC------PMHLSEH---GRSSLHLTHVTFSPNGEEV  294 (737)
Q Consensus       257 ----------~~~~~~-----------------------~~~~~~------~~~~~~~---~~~~~~i~~v~~sp~g~~l  294 (737)
                                ..++..                       ...++.      ..+....   ......+++++.+++|++.
T Consensus       384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~  463 (910)
T KOG1539|consen  384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFV  463 (910)
T ss_pred             cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceE
Confidence                      000000                       000000      0000000   0122358999999999999


Q ss_pred             EEEeCCCeEEEEEcCCCC
Q 004685          295 LLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       295 ~~g~~dg~v~iwd~~~~~  312 (737)
                      +.|...|.|.+||++++-
T Consensus       464 ~IG~S~G~Id~fNmQSGi  481 (910)
T KOG1539|consen  464 FIGYSKGTIDRFNMQSGI  481 (910)
T ss_pred             EEeccCCeEEEEEcccCe
Confidence            999999999999999964

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.93  E-value=2.1e-25  Score=221.96  Aligned_cols=265  Identities=16%  Similarity=0.227  Sum_probs=215.9

Q ss_pred             hhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCc
Q 004685           14 MLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS   93 (737)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~   93 (737)
                      +...-++..+.+.+++|++|+.+. ..+++++|.||..+|.+++|+.+|..+.|++.|+.|++||+++|+++..|.  -.
T Consensus       223 fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~  299 (503)
T KOG0282|consen  223 FPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LD  299 (503)
T ss_pred             ccceeeEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe--cC
Confidence            334667788899999999999665 678999999999999999999999999999999999999999999999883  45


Q ss_pred             cceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEE
Q 004685           94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (737)
Q Consensus        94 ~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~  173 (737)
                      ..++|+.|+|+. .+.|++|+.|+.|+.||++.+.          .++.+..|-+.|..+.|-+ ++..+++.+.|++++
T Consensus       300 ~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~k----------vvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~r  367 (503)
T KOG0282|consen  300 KVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGK----------VVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVR  367 (503)
T ss_pred             CCceeeecCCCC-CcEEEEecCCCcEEEEeccchH----------HHHHHHhhhhheeeeEEcc-CCceEeeeccCccEE
Confidence            678999999995 6899999999999999999743          3778888999999999999 668888999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004685          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (737)
Q Consensus       174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~  253 (737)
                      +|+.+..-.+..                      +....  .....++..+|. +.++++-+.|+.|.+|.+...-....
T Consensus       368 iWe~~~~v~ik~----------------------i~~~~--~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r~nk  422 (503)
T KOG0282|consen  368 IWENRIPVPIKN----------------------IADPE--MHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFRLNK  422 (503)
T ss_pred             EEEcCCCccchh----------------------hcchh--hccCcceecCCC-CCeehhhccCceEEEEecccccccCH
Confidence            999988764311                      11111  234567888997 57999999999999998754321111


Q ss_pred             ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004685          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (737)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (737)
                                .+.     ..++...+ --..|.|||||++|++|..||.+.+||.++-+.......+..++..+.|+|..
T Consensus       423 ----------kK~-----feGh~vaG-ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e  486 (503)
T KOG0282|consen  423 ----------KKR-----FEGHSVAG-YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE  486 (503)
T ss_pred             ----------hhh-----hcceeccC-ceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence                      011     11122223 24578999999999999999999999999988888888888999999999975


Q ss_pred             C
Q 004685          334 N  334 (737)
Q Consensus       334 ~  334 (737)
                      .
T Consensus       487 ~  487 (503)
T KOG0282|consen  487 P  487 (503)
T ss_pred             c
Confidence            4

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=5.4e-26  Score=207.38  Aligned_cols=243  Identities=19%  Similarity=0.258  Sum_probs=192.5

Q ss_pred             CCCCCChhhhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004685            4 FPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK   83 (737)
Q Consensus         4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~   83 (737)
                      +|+-+-.++++.-.-+...+..-++.-.+..  -.+..=+.+|.||+++|+....+.+..+.|+++.|-+-+|||.-+|.
T Consensus        15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~--g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd   92 (334)
T KOG0278|consen   15 RPVVDLAFSPITPDGYFLISASKDGKPMLRN--GDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD   92 (334)
T ss_pred             cceeEEeccCCCCCceEEEEeccCCCchhcc--CCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh
Confidence            3444555555544444444444454444433  44556678999999999999999998999999999999999999999


Q ss_pred             EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (737)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  163 (737)
                      .++.|  .|+.-|..++|+.+  .++|++|+.+..++|||++..+.         +...+.+|++.|..+.|...+ +.|
T Consensus        93 elhsf--~hkhivk~~af~~d--s~~lltgg~ekllrvfdln~p~A---------pp~E~~ghtg~Ir~v~wc~eD-~~i  158 (334)
T KOG0278|consen   93 ELHSF--EHKHIVKAVAFSQD--SNYLLTGGQEKLLRVFDLNRPKA---------PPKEISGHTGGIRTVLWCHED-KCI  158 (334)
T ss_pred             hhhhh--hhhheeeeEEeccc--chhhhccchHHHhhhhhccCCCC---------CchhhcCCCCcceeEEEeccC-ceE
Confidence            99998  48899999999999  58999999999999999997653         356788999999999999844 677


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw  243 (737)
                      +++..|++|++||.+++..+.                      .+    .....|+++.++++ + .+++-...+.|++|
T Consensus       159 LSSadd~tVRLWD~rTgt~v~----------------------sL----~~~s~VtSlEvs~d-G-~ilTia~gssV~Fw  210 (334)
T KOG0278|consen  159 LSSADDKTVRLWDHRTGTEVQ----------------------SL----EFNSPVTSLEVSQD-G-RILTIAYGSSVKFW  210 (334)
T ss_pred             EeeccCCceEEEEeccCcEEE----------------------EE----ecCCCCcceeeccC-C-CEEEEecCceeEEe
Confidence            788999999999999987431                      11    11356889999997 3 55666677899999


Q ss_pred             ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      |..+..+++.+..                      ...|.+...+|+...+++|+.|..++.||..++.
T Consensus       211 daksf~~lKs~k~----------------------P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge  257 (334)
T KOG0278|consen  211 DAKSFGLLKSYKM----------------------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE  257 (334)
T ss_pred             ccccccceeeccC----------------------ccccccccccCCCceEEecCcceEEEEEeccCCc
Confidence            9998877665421                      1248899999999999999999999999999864

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.3e-24  Score=231.00  Aligned_cols=174  Identities=16%  Similarity=0.214  Sum_probs=138.7

Q ss_pred             EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC----------------------------CCC-C---CC-
Q 004685           86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR----------------------------FSG-R---GL-  132 (737)
Q Consensus        86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~----------------------------~~~-~---~~-  132 (737)
                      +.+...|.+.|+++.|+++  |.+||+|+.|+.|+||.+..                            ... .   .. 
T Consensus       260 Qe~~~ah~gaIw~mKFS~D--GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHD--GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             eccccccCCcEEEEEeCCC--CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            3442389999999999999  89999999999999999875                            000 0   00 


Q ss_pred             -----------------CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          133 -----------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       133 -----------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                                       -....+|+..+.+|.+.|.++.|+. + ++|++++.|++|++|++....+           ..
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n-~fLLSSSMDKTVRLWh~~~~~C-----------L~  404 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-N-NFLLSSSMDKTVRLWHPGRKEC-----------LK  404 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheeccccc-C-CeeEeccccccEEeecCCCcce-----------ee
Confidence                             0011356778899999999999997 4 6888999999999999987653           33


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                      .+               .|...|+|++|+|.+.++|++|+-|+.||||++...+.+.-.                     
T Consensus       405 ~F---------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~---------------------  448 (712)
T KOG0283|consen  405 VF---------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN---------------------  448 (712)
T ss_pred             EE---------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh---------------------
Confidence            33               377899999999999999999999999999999865432111                     


Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .-. .-|++++|.|||++.++|+.+|.+++|+....
T Consensus       449 Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  449 DLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL  483 (712)
T ss_pred             hhh-hhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence            111 14999999999999999999999999998874

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=7.9e-24  Score=229.45  Aligned_cols=250  Identities=14%  Similarity=0.184  Sum_probs=179.8

Q ss_pred             CCCcccccccccccccccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--------EEEEEcccCc
Q 004685           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK--------LLHSIETGHS   93 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~--------~~~~~~~~h~   93 (737)
                      .++..+.+++|+.  .+..++..+.+|.++|.+++|+|+ +.+||+|+.|++|+|||+.++.        .+..+ .+|.
T Consensus        49 gGG~~gvI~L~~~--~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~  125 (568)
T PTZ00420         49 GGGLIGAIRLENQ--MRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHK  125 (568)
T ss_pred             CCCceeEEEeeec--CCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCC
Confidence            3567788889883  344678899999999999999996 7899999999999999997642        23345 6899


Q ss_pred             cceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEE
Q 004685           94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (737)
Q Consensus        94 ~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~  173 (737)
                      ..|.+++|+|+. ..+|++++.|++|+|||++....          ...+. |...|.+++|+| ++.+|++++.|+.|+
T Consensus       126 ~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~----------~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~Ir  192 (568)
T PTZ00420        126 KKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKR----------AFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMH  192 (568)
T ss_pred             CcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcE----------EEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEE
Confidence            999999999984 34568999999999999986431          33343 567899999999 668999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccc-----eEEEEEecCCCcEEEEEeCCC----cEEEEE
Q 004685          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS-----LKSCDISSTRPHLLLVGGSDA----FARLYD  244 (737)
Q Consensus       174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~i~~sp~~~~~l~t~s~Dg----~i~iwd  244 (737)
                      +||++++..+                         .....|...     +....|+++ +.+|++++.|+    .|+|||
T Consensus       193 IwD~Rsg~~i-------------------------~tl~gH~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWD  246 (568)
T PTZ00420        193 IIDPRKQEIA-------------------------SSFHIHDGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWD  246 (568)
T ss_pred             EEECCCCcEE-------------------------EEEecccCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEE
Confidence            9999987632                         111223332     233345576 46888877664    799999


Q ss_pred             CCC-CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcce-eeeecCC
Q 004685          245 RRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA-MRYTVGD  322 (737)
Q Consensus       245 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~-~~~~~~~  322 (737)
                      ++. .+++..+..                  . .....+......++|.++++|..|+.|++|++..+.... ..+....
T Consensus       247 lr~~~~pl~~~~l------------------d-~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~  307 (568)
T PTZ00420        247 LKNTTSALVTMSI------------------D-NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCS  307 (568)
T ss_pred             CCCCCCceEEEEe------------------c-CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCC
Confidence            995 333322211                  0 111123333345568999999999999999998754222 2233467


Q ss_pred             CCeeeeeccCC
Q 004685          323 ASKIMSFTPTL  333 (737)
Q Consensus       323 ~~~~~~~~p~~  333 (737)
                      +...++|.|..
T Consensus       308 p~~g~~f~Pkr  318 (568)
T PTZ00420        308 PFRSFGFLPKQ  318 (568)
T ss_pred             CccceEEcccc
Confidence            77888888853

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=2.5e-24  Score=198.11  Aligned_cols=162  Identities=20%  Similarity=0.259  Sum_probs=129.8

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      ++|...|.+|+|+-+  |..|++|+.|+++.+|++.....        ..-....+|.+.|-.++|+|.++.+|++++.|
T Consensus        17 ~~~~~~v~Sv~wn~~--g~~lasgs~dktv~v~n~e~~r~--------~~~~~~~gh~~svdql~w~~~~~d~~atas~d   86 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCD--GTKLASGSFDKTVSVWNLERDRF--------RKELVYRGHTDSVDQLCWDPKHPDLFATASGD   86 (313)
T ss_pred             hhhhhcceEEEEccc--CceeeecccCCceEEEEecchhh--------hhhhcccCCCcchhhheeCCCCCcceEEecCC
Confidence            678899999999999  79999999999999999986421        12345678999999999999999999999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      ++|++||++.+++...+                      .    ....-.-+.|+|+ +.++++++.|..|.+.|.++.+
T Consensus        87 k~ir~wd~r~~k~~~~i----------------------~----~~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~  139 (313)
T KOG1407|consen   87 KTIRIWDIRSGKCTARI----------------------E----TKGENINITWSPD-GEYIAVGNKDDRITFIDARTYK  139 (313)
T ss_pred             ceEEEEEeccCcEEEEe----------------------e----ccCcceEEEEcCC-CCEEEEecCcccEEEEEecccc
Confidence            99999999998854111                      0    1123345789997 5899999999999999999887


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .....+.                      ...+..++|+-++.+++...+.|+|.|.....
T Consensus       140 ~~~~~~~----------------------~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps  178 (313)
T KOG1407|consen  140 IVNEEQF----------------------KFEVNEISWNNSNDLFFLTNGLGCVEILSYPS  178 (313)
T ss_pred             eeehhcc----------------------cceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence            6544321                      11377899998889888888888988876543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=1e-23  Score=206.82  Aligned_cols=202  Identities=19%  Similarity=0.312  Sum_probs=172.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      ..|+++...|....++||+.|..+.++|....+.+..+ .+|...|+.+.|+|+  ...+++++.|..|++|....... 
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~--~~~v~~aSad~~i~vws~~~~s~-  295 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKD--LDTVITASADEIIRVWSVPLSSE-  295 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccc--hhheeecCCcceEEeeccccccC-
Confidence            56889999888789999999999999999999999988 899999999999999  58899999999999999876332 


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (737)
                               ......|..+|+.+..+| .+.||++++.|++..+.|++++...           .            +..
T Consensus       296 ---------~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~l-----------t------------~vs  342 (506)
T KOG0289|consen  296 ---------PTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQL-----------T------------VVS  342 (506)
T ss_pred             ---------ccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEE-----------E------------EEe
Confidence                     455678999999999999 6789999999999999999998743           1            111


Q ss_pred             CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004685          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (737)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~  290 (737)
                      .......+++.+|+|+ +.+|.+|..|+.++|||+.+...+..|+                    +|.+ +|..++|+.+
T Consensus       343 ~~~s~v~~ts~~fHpD-gLifgtgt~d~~vkiwdlks~~~~a~Fp--------------------ght~-~vk~i~FsEN  400 (506)
T KOG0289|consen  343 DETSDVEYTSAAFHPD-GLIFGTGTPDGVVKIWDLKSQTNVAKFP--------------------GHTG-PVKAISFSEN  400 (506)
T ss_pred             eccccceeEEeeEcCC-ceEEeccCCCceEEEEEcCCccccccCC--------------------CCCC-ceeEEEeccC
Confidence            1122356899999998 6899999999999999999877655552                    3444 6999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCC
Q 004685          291 GEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       291 g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      |.||++++.|+.|++||++..
T Consensus       401 GY~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  401 GYWLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             ceEEEEEecCCeEEEEEehhh
Confidence            999999999999999999984

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=1.8e-23  Score=216.47  Aligned_cols=203  Identities=20%  Similarity=0.301  Sum_probs=163.1

Q ss_pred             ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EEcccCccceEE-EEEeeCCCCCEEEEEEC
Q 004685           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SIETGHSANVFC-TKFVPETSDELVVSGAG  115 (737)
Q Consensus        39 ~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~--~~~~~h~~~V~~-v~~sp~~~~~~l~sgs~  115 (737)
                      ..+..+.+.||...|..+++.+ +..+++++.||++++|+-..++.+.  .+ .+|.+.|.+ +++.+. ++-.+++|+.
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~-~~~~g~i~~~i~y~e~-~~~~l~~g~~   79 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAF-EGPKGFIANSICYAES-DKGRLVVGGM   79 (745)
T ss_pred             cceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceec-ccCcceeeccceeccc-cCcceEeecc
Confidence            3567789999999999988765 4579999999999999987666544  34 567788877 888873 2567999999


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      |++|.+|....          ..|+..+++|...|++++... .+. +++||.|.++++|-.....              
T Consensus        80 D~~i~v~~~~~----------~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~l~--------------  133 (745)
T KOG0301|consen   80 DTTIIVFKLSQ----------AEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGELV--------------  133 (745)
T ss_pred             cceEEEEecCC----------CCchhhhhccccceeeeecCC-cCc-eEecccccceEEecchhhh--------------
Confidence            99999999886          356899999999999999766 333 7899999999999765432              


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                                   ....+|+..|+++++-|.  +.++||+.|.+|++|.-.+               ++++|       .
T Consensus       134 -------------~~l~gH~asVWAv~~l~e--~~~vTgsaDKtIklWk~~~---------------~l~tf-------~  176 (745)
T KOG0301|consen  134 -------------YSLQGHTASVWAVASLPE--NTYVTGSADKTIKLWKGGT---------------LLKTF-------S  176 (745)
T ss_pred             -------------cccCCcchheeeeeecCC--CcEEeccCcceeeeccCCc---------------hhhhh-------c
Confidence                         224578999999999996  4999999999999997632               23333       4


Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      +|.. -|+.+++-|++. +++++.||.|+.|++.
T Consensus       177 gHtD-~VRgL~vl~~~~-flScsNDg~Ir~w~~~  208 (745)
T KOG0301|consen  177 GHTD-CVRGLAVLDDSH-FLSCSNDGSIRLWDLD  208 (745)
T ss_pred             cchh-heeeeEEecCCC-eEeecCCceEEEEecc
Confidence            4555 499999998865 8899999999999984

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.3e-24  Score=222.68  Aligned_cols=219  Identities=16%  Similarity=0.238  Sum_probs=180.5

Q ss_pred             cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc-CccceEEEEEeeCCC
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETS  106 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~-h~~~V~~v~~sp~~~  106 (737)
                      ..+-+|+........+..+  +.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+ .+ |...|-+++|+.   
T Consensus       197 ~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~-~~~h~~rvg~laW~~---  270 (484)
T KOG0305|consen  197 QSVYLWSASSGSVTELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL-RGSHASRVGSLAWNS---  270 (484)
T ss_pred             ceEEEEecCCCceEEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc-cCCcCceeEEEeccC---
Confidence            4677777555554444444  3889999999999999999999999999999999989888 55 999999999994   


Q ss_pred             CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 004685          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (737)
Q Consensus       107 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~  186 (737)
                       ..+.+|+.|+.|..+|++.....         ...+.+|...|+.+.|++ ++.++++|+.|+.+.|||.....+    
T Consensus       271 -~~lssGsr~~~I~~~dvR~~~~~---------~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p----  335 (484)
T KOG0305|consen  271 -SVLSSGSRDGKILNHDVRISQHV---------VSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEP----  335 (484)
T ss_pred             -ceEEEecCCCcEEEEEEecchhh---------hhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccc----
Confidence             58999999999999999975432         235889999999999999 669999999999999999955442    


Q ss_pred             CCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe--CCCcEEEEECCCCCCcccccCCCCCCCCc
Q 004685          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (737)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (737)
                                           ......|...|.+++|+|-...+||+|+  .|++|++||..++..+..+          
T Consensus       336 ---------------------~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----------  384 (484)
T KOG0305|consen  336 ---------------------KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----------  384 (484)
T ss_pred             ---------------------cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----------
Confidence                                 2334468899999999999888999975  6999999999988766554          


Q ss_pred             cccccccccCCCCcccceeEEEEcCCCCEEEEEeC--CCeEEEEEcCC
Q 004685          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLMDVNH  310 (737)
Q Consensus       265 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~--dg~v~iwd~~~  310 (737)
                                  ..+..|.++.|++..+.|+++..  ++.|.||+..+
T Consensus       385 ------------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps  420 (484)
T KOG0305|consen  385 ------------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS  420 (484)
T ss_pred             ------------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence                        22335999999999877777755  67899998776

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.7e-24  Score=210.90  Aligned_cols=165  Identities=15%  Similarity=0.189  Sum_probs=135.0

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      ..|+..|..+.|+++  |.+||+++.|.+..+|.+.....       ++...++.+|..+|..+.|+|+ .++|++|+.|
T Consensus       221 ~~htdEVWfl~FS~n--GkyLAsaSkD~Taiiw~v~~d~~-------~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~  290 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHN--GKYLASASKDSTAIIWIVVYDVH-------FKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFD  290 (519)
T ss_pred             hhCCCcEEEEEEcCC--CeeEeeccCCceEEEEEEecCcc-------eeeeeeeecccCceEEEEECCC-CCeEEecCch
Confidence            789999999999999  89999999999999999875322       3457888999999999999995 4788899999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      ..+.+||+.++....                        ....++...+.+++|.|+ +..+++|+.|+.|..||+....
T Consensus       291 e~~~lwDv~tgd~~~------------------------~y~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDgn~  345 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRH------------------------LYPSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDGNI  345 (519)
T ss_pred             HheeeccCCcchhhh------------------------hcccCcCCCcceeEEccC-CceeEecCCCCcEEEecCCcch
Confidence            999999999987431                        111124578899999998 6899999999999999997432


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                       +...                    .+.....|.+++.++||+++++.+.|..+++++..+
T Consensus       346 -~~~W--------------------~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~  385 (519)
T KOG0293|consen  346 -LGNW--------------------EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA  385 (519)
T ss_pred             -hhcc--------------------cccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence             2111                    222233599999999999999999999999998776

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=4e-23  Score=195.03  Aligned_cols=197  Identities=21%  Similarity=0.251  Sum_probs=157.3

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      ....|..|.|+|.+..|+.++.||++++||+........+  .|..++++++|.++   ..+++|+.||.|+.+|+....
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE---STIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC---ceEEEeccCceEEEEEecCCc
Confidence            3678999999998888888999999999999988666666  58999999999997   689999999999999999744


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                                 ...+..|...|.||...+ ....+++|+.|++|++||.+.....                         
T Consensus        87 -----------~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~-------------------------  129 (323)
T KOG1036|consen   87 -----------EDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVV-------------------------  129 (323)
T ss_pred             -----------ceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccc-------------------------
Confidence                       455678999999999998 5577889999999999999963321                         


Q ss_pred             cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (737)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s  288 (737)
                       ........|.++...   ++.|++|+.|..+.+||+|+........                   ...-.+.+.++++-
T Consensus       130 -~~~d~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~r-------------------eS~lkyqtR~v~~~  186 (323)
T KOG1036|consen  130 -GTFDQGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRR-------------------ESSLKYQTRCVALV  186 (323)
T ss_pred             -cccccCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhc-------------------cccceeEEEEEEEe
Confidence             001123477888776   4689999999999999999876322110                   11223369999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCC
Q 004685          289 PNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       289 p~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      |++.-.++++-||.|.+=.+..
T Consensus       187 pn~eGy~~sSieGRVavE~~d~  208 (323)
T KOG1036|consen  187 PNGEGYVVSSIEGRVAVEYFDD  208 (323)
T ss_pred             cCCCceEEEeecceEEEEccCC
Confidence            9999999999999988755554

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6e-24  Score=200.10  Aligned_cols=224  Identities=22%  Similarity=0.303  Sum_probs=182.3

Q ss_pred             cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (737)
Q Consensus        38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  117 (737)
                      -.+.+.+.|.||++.|+.++.......+.+++.|.+.+||.++++.++.++ .+|.+.|++++|++.  +.++++++.|+
T Consensus       136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s--~~L~lTaSGD~  212 (481)
T KOG0300|consen  136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNS--GLLLLTASGDE  212 (481)
T ss_pred             eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEeccc--cceEEEccCCc
Confidence            456778889999999999998877789999999999999999999999999 899999999999998  79999999999


Q ss_pred             cEEEEecC------CCCCCC----------C-------C------C-CCCCCceeeccCCCceeEEEEecCCCcEEEEEe
Q 004685          118 EVRLFNLS------RFSGRG----------L-------D------D-NAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (737)
Q Consensus       118 ~I~iwd~~------~~~~~~----------~-------~------~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  167 (737)
                      +..||...      .+....          .       +      . .--.|+..+.+|...|.+..|-. +++.+++++
T Consensus       213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaS  291 (481)
T KOG0300|consen  213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTAS  291 (481)
T ss_pred             chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeee
Confidence            99999832      100000          0       0      0 00135677889999999999988 778899999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       168 ~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~  247 (737)
                      .|++..+||+++++.                         +....+|...++.++-+|. .+++++++.|.+.++||++.
T Consensus       292 WDRTAnlwDVEtge~-------------------------v~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFRe  345 (481)
T KOG0300|consen  292 WDRTANLWDVETGEV-------------------------VNILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFRE  345 (481)
T ss_pred             ccccceeeeeccCce-------------------------eccccCcchhccccccCCc-ceEEEEeccCceeEeccchh
Confidence            999999999999874                         3344567788899999997 58999999999999999983


Q ss_pred             CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      .-            ..+..|       .||.. .|+++.|.-+.+ +++|+.|.+|++||+++..
T Consensus       346 aI------------~sV~VF-------QGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  346 AI------------QSVAVF-------QGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR  389 (481)
T ss_pred             hc------------ceeeee-------ccccc-ceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence            21            112222       45555 699999997765 8999999999999999854

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=1.5e-23  Score=226.50  Aligned_cols=221  Identities=26%  Similarity=0.355  Sum_probs=180.8

Q ss_pred             CCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe
Q 004685           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s  102 (737)
                      ....+.+|.+|+ ..........+.||.+.|.+++|...+.+|++|+.|.+++|||+.+|++.+.+ .+|...|.++...
T Consensus       223 ~~s~~~tl~~~~-~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~  300 (537)
T KOG0274|consen  223 SGSDDSTLHLWD-LNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTID  300 (537)
T ss_pred             ecCCCceeEEee-cccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEcc
Confidence            355667777888 33333444449999999999999887899999999999999999999999999 7999999999887


Q ss_pred             eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                      +.    ++++|+.|.+|++|++.++.          .+..+.+|..+|+++..+   ..++++|+.|++|++||+.+++.
T Consensus       301 ~~----~~~sgs~D~tVkVW~v~n~~----------~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~c  363 (537)
T KOG0274|consen  301 PF----LLVSGSRDNTVKVWDVTNGA----------CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKC  363 (537)
T ss_pred             Cc----eEeeccCCceEEEEeccCcc----------eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhcee
Confidence            64    78999999999999999632          367777899999999995   57999999999999999997763


Q ss_pred             CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCC
Q 004685          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPP  261 (737)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~  261 (737)
                                               +....+|...|.++.+.+.  ..+++|+.|+.|++||+++. +.+..+       
T Consensus       364 -------------------------l~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl-------  409 (537)
T KOG0274|consen  364 -------------------------LKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTL-------  409 (537)
T ss_pred             -------------------------eeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhh-------
Confidence                                     4455678999999988763  69999999999999999987 544433       


Q ss_pred             CCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                                   .+|.. -+..+  ...+++|++++.|++|++||..+++
T Consensus       410 -------------~~h~~-~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  410 -------------QGHTS-LVSSL--LLRDNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             -------------cCCcc-ccccc--ccccceeEeccccccEEEeecccCc
Confidence                         22332 24333  3477899999999999999988854

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=1.6e-23  Score=207.70  Aligned_cols=184  Identities=16%  Similarity=0.192  Sum_probs=142.3

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      ..|.+.|+.+.+.|.. ..++++.+..+.|.|||...............|-..+.+|...-.+++|++.....|++++.|
T Consensus       121 i~h~gEVnRaRymPQn-p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQN-PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             ccCCccchhhhhCCCC-CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            3589999999999986 788899999999999999865444332224456678899999889999999887899999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      ++|.+||+.......                  ........+.+|...|..++|++...++|++++.|+.+.|||+|+..
T Consensus       200 ~~i~lwdi~~~~~~~------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~  261 (422)
T KOG0264|consen  200 HTICLWDINAESKED------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT  261 (422)
T ss_pred             CcEEEEeccccccCC------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence            999999998765310                  00122334557889999999999988999999999999999999631


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ...                  .....+|.. .|+|++|+| ++..|++|+.|++|.+||+++.
T Consensus       262 ~~~------------------~~~~~ah~~-~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL  305 (422)
T KOG0264|consen  262 SKP------------------SHSVKAHSA-EVNCVAFNPFNEFILATGSADKTVALWDLRNL  305 (422)
T ss_pred             CCC------------------cccccccCC-ceeEEEeCCCCCceEEeccCCCcEEEeechhc
Confidence            100                  001123444 699999999 5566778888999999999984

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=2e-24  Score=203.84  Aligned_cols=262  Identities=18%  Similarity=0.223  Sum_probs=211.6

Q ss_pred             CCCCCccccccccccccccccccee------ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCcc
Q 004685           21 DTRPDVNHSLQMHSSLVRRLSQERE------LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA   94 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~------l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~   94 (737)
                      ..+.+.++-+.+|+....+.+.-..      |.-|..+|.||+|+.|.++||+|+.||.|+||.+.+|.++..|..+|+.
T Consensus       228 LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk  307 (508)
T KOG0275|consen  228 LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK  307 (508)
T ss_pred             EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc
Confidence            3456778888999855544432222      2336789999999999999999999999999999999999999889999


Q ss_pred             ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004685           95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ  174 (737)
Q Consensus        95 ~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~v  174 (737)
                      .|+|+.|+.+  +..+++++.|.+++|.-+..+          +.+..+.+|++.|+...|.+ +++.+++++.||+|++
T Consensus       308 Gvt~l~FSrD--~SqiLS~sfD~tvRiHGlKSG----------K~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkv  374 (508)
T KOG0275|consen  308 GVTCLSFSRD--NSQILSASFDQTVRIHGLKSG----------KCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKV  374 (508)
T ss_pred             CeeEEEEccC--cchhhcccccceEEEeccccc----------hhHHHhcCccccccceEEcC-CCCeEEEecCCccEEE
Confidence            9999999999  689999999999999999864          33788999999999999999 6688889999999999


Q ss_pred             EEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004685          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (737)
Q Consensus       175 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~  254 (737)
                      |+..+.++...                       ....+....|+.+..-|.++..+++|...+++.|.++. ++.+..+
T Consensus       375 W~~KtteC~~T-----------------------fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsf  430 (508)
T KOG0275|consen  375 WHGKTTECLST-----------------------FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSF  430 (508)
T ss_pred             ecCcchhhhhh-----------------------ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeee
Confidence            99998774411                       11123456788888889888999999999999999986 3333333


Q ss_pred             cCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCC
Q 004685          255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (737)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~  334 (737)
                      ..                  ....++...+++.||.|.++++.+.|+.+++|.+.+++....+.-+...+-.++.+|..+
T Consensus       431 sS------------------GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN  492 (508)
T KOG0275|consen  431 SS------------------GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN  492 (508)
T ss_pred             cc------------------CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence            21                  112233577788999999999999999999999999998888777777777788888654


Q ss_pred             Ccc
Q 004685          335 GLE  337 (737)
Q Consensus       335 ~~~  337 (737)
                      -++
T Consensus       493 llA  495 (508)
T KOG0275|consen  493 LLA  495 (508)
T ss_pred             hhh
Confidence            433

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=9.8e-24  Score=198.16  Aligned_cols=269  Identities=14%  Similarity=0.132  Sum_probs=202.6

Q ss_pred             ccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685           48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        48 ~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~  125 (737)
                      ...+.|.+|+||| ...+++.|+.|++||+|+++. +..+.+-...|.++|.+++|+.+  |..+++|+-|+.+++||+.
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC--CceEEeeccCCceEEEEcc
Confidence            3568899999999 556777999999999999986 45554444789999999999999  7999999999999999999


Q ss_pred             CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCc--EEEEEeCCCcEEEEEcCCCCCCCCCC----------------
Q 004685          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH--VVWSASEDGTLRQHDFRQGSSCPPAG----------------  187 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~--~l~s~s~Dg~I~vwdl~~~~~~~~~~----------------  187 (737)
                      +++           +..+..|..+|..+.|-+ +..  .|+|||.|++|++||.+...++..+.                
T Consensus       103 S~Q-----------~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~v  170 (347)
T KOG0647|consen  103 SGQ-----------VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAV  170 (347)
T ss_pred             CCC-----------eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeE
Confidence            753           566788999999999987 434  89999999999999999877652111                


Q ss_pred             CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (737)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (737)
                      ....+....++.+.++....-.........+.|++...+. +..+.|+-+|++-|..+....+...+..     +|.+..
T Consensus       171 Vata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFtF-----kCHR~~  244 (347)
T KOG0647|consen  171 VATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFTF-----KCHRST  244 (347)
T ss_pred             EEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCceeE-----EEeccC
Confidence            1113334445555544432222222244578899999874 6779999999999999987644333221     121110


Q ss_pred             ccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCC
Q 004685          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP  341 (737)
Q Consensus       268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  341 (737)
                      ..     ....-+.|++|+|+|.-..|++++.||++.+||-....++.....+..++.+.+|+.++...++...
T Consensus       245 ~~-----~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  245 NS-----VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             CC-----CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence            00     0012457999999999999999999999999999887777777888999999999998877766553

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=1.4e-22  Score=219.78  Aligned_cols=192  Identities=14%  Similarity=0.164  Sum_probs=147.8

Q ss_pred             EeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCC
Q 004685           68 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT  147 (737)
Q Consensus        68 gs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~  147 (737)
                      |+.++.|++|+......+..+ .+|...|.+++|+|+. +.+|++|+.|++|+|||+........  ....++..+.+|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~-~~lLASgS~DgtIrIWDi~t~~~~~~--~i~~p~~~L~gH~  125 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCF-SEILASGSEDLTIRVWEIPHNDESVK--EIKDPQCILKGHK  125 (568)
T ss_pred             CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCCcccc--ccccceEEeecCC
Confidence            667889999999887778888 7999999999999974 68999999999999999975321100  0012355678899


Q ss_pred             CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC
Q 004685          148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (737)
Q Consensus       148 ~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  227 (737)
                      ..|.+++|+|.+..+|++++.|++|++||+++++..              .        .+    .+...|.+++|+|+ 
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--------------~--------~i----~~~~~V~Slswspd-  178 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--------------F--------QI----NMPKKLSSLKWNIK-  178 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------E--------EE----ecCCcEEEEEECCC-
Confidence            999999999966567789999999999999987522              0        01    12346899999997 


Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc----ceeEEEEcCCCCEEEEEeCCC--
Q 004685          228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL----HLTHVTFSPNGEEVLLSYSGE--  301 (737)
Q Consensus       228 ~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~v~~sp~g~~l~~g~~dg--  301 (737)
                      +.+|++++.|+.|+|||+++++.+..+.                    +|.+.    .+....|++++.+|++++.|+  
T Consensus       179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~--------------------gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~  238 (568)
T PTZ00420        179 GNLLSGTCVGKHMHIIDPRKQEIASSFH--------------------IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN  238 (568)
T ss_pred             CCEEEEEecCCEEEEEECCCCcEEEEEe--------------------cccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence            6899999999999999999887554432                    22221    123345679999999988774  


Q ss_pred             --eEEEEEcCC
Q 004685          302 --HVYLMDVNH  310 (737)
Q Consensus       302 --~v~iwd~~~  310 (737)
                        .|++||++.
T Consensus       239 ~R~VkLWDlr~  249 (568)
T PTZ00420        239 MREMKLWDLKN  249 (568)
T ss_pred             ccEEEEEECCC
Confidence              799999886

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=1.6e-24  Score=211.34  Aligned_cols=271  Identities=21%  Similarity=0.279  Sum_probs=218.4

Q ss_pred             hhhhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc
Q 004685           10 SIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE   89 (737)
Q Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~   89 (737)
                      .....+..+.+..+++.+..|++|+....+...+.+|.|-.++|+++.|.++++.+++++.|+.+++|++...+...++ 
T Consensus       179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-  257 (459)
T KOG0288|consen  179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-  257 (459)
T ss_pred             ceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-
Confidence            3344677778889999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      .+|++.|+++.|.-.  ...+++|+.|.+|++||+....  |        ..+.. ..+.+..|...   ...+++|-.|
T Consensus       258 sGHtdkVt~ak~~~~--~~~vVsgs~DRtiK~WDl~k~~--C--------~kt~l-~~S~cnDI~~~---~~~~~SgH~D  321 (459)
T KOG0288|consen  258 SGHTDKVTAAKFKLS--HSRVVSGSADRTIKLWDLQKAY--C--------SKTVL-PGSQCNDIVCS---ISDVISGHFD  321 (459)
T ss_pred             cccccceeeehhhcc--ccceeeccccchhhhhhhhhhh--e--------ecccc-ccccccceEec---ceeeeecccc
Confidence            899999999999987  3559999999999999998622  2        22222 23445666664   3678899999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      ++|++||.+.....                         ...+. .+.|+++..+++ +..+++++.|.++.+.|+++..
T Consensus       322 kkvRfwD~Rs~~~~-------------------------~sv~~-gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~e  374 (459)
T KOG0288|consen  322 KKVRFWDIRSADKT-------------------------RSVPL-GGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKE  374 (459)
T ss_pred             cceEEEeccCCcee-------------------------eEeec-CcceeeEeeccC-CeEEeeecCCCceeeeeccccc
Confidence            99999999987633                         11112 247899999997 5788888999999999999876


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCC--Ceee
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA--SKIM  327 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~  327 (737)
                      ....+...             .+    .....++.+.|||++.|+++|+.||.|+||++.+++........+..  +..+
T Consensus       375 I~~~~sA~-------------g~----k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~  437 (459)
T KOG0288|consen  375 IRQTFSAE-------------GF----KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL  437 (459)
T ss_pred             EEEEeecc-------------cc----ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEE
Confidence            54443211             00    11123889999999999999999999999999999877776665554  8889


Q ss_pred             eeccCCCCccCCCC
Q 004685          328 SFTPTLNGLELQPP  341 (737)
Q Consensus       328 ~~~p~~~~~~~~~~  341 (737)
                      +|+|.+.++.....
T Consensus       438 ~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  438 SWNPSGSGLLSADK  451 (459)
T ss_pred             EEcCCCchhhcccC
Confidence            99998877665443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=1.1e-23  Score=208.83  Aligned_cols=250  Identities=18%  Similarity=0.221  Sum_probs=193.2

Q ss_pred             cCCCCCccccccccccccccc--------ccceeecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeE------
Q 004685           20 TDTRPDVNHSLQMHSSLVRRL--------SQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKL------   84 (737)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~H~~~V~~l~~s~~g-~~lasgs~dg~V~vwd~~~~~~------   84 (737)
                      +-+.......+.+|+..-...        .+-.+|.||++.=.+|+|++.. -.|++|+.|++|.+||+.....      
T Consensus       139 iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~  218 (422)
T KOG0264|consen  139 IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVD  218 (422)
T ss_pred             EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcccc
Confidence            333445556677777433322        3344899999978899999954 5899999999999999975322      


Q ss_pred             -EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685           85 -LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (737)
Q Consensus        85 -~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  163 (737)
                       ...+ .+|+..|..++|++.. .++|++++.|+.+.|||++...        .++.....+|+..|.|++|+|-+..+|
T Consensus       219 p~~~~-~~h~~~VeDV~~h~~h-~~lF~sv~dd~~L~iwD~R~~~--------~~~~~~~~ah~~~vn~~~fnp~~~~il  288 (422)
T KOG0264|consen  219 PKTIF-SGHEDVVEDVAWHPLH-EDLFGSVGDDGKLMIWDTRSNT--------SKPSHSVKAHSAEVNCVAFNPFNEFIL  288 (422)
T ss_pred             ceEEe-ecCCcceehhhccccc-hhhheeecCCCeEEEEEcCCCC--------CCCcccccccCCceeEEEeCCCCCceE
Confidence             2334 7999999999999986 7899999999999999999631        245678889999999999999998999


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw  243 (737)
                      ||||.|++|.+||+|+...                        .+..+.+|...|..+.|+|.....||+++.|+++.+|
T Consensus       289 AT~S~D~tV~LwDlRnL~~------------------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vW  344 (422)
T KOG0264|consen  289 ATGSADKTVALWDLRNLNK------------------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVW  344 (422)
T ss_pred             EeccCCCcEEEeechhccc------------------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEE
Confidence            9999999999999998763                        2566678999999999999998999999999999999


Q ss_pred             ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEE-EEEeCCCeEEEEEcCC
Q 004685          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYSGEHVYLMDVNH  310 (737)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l-~~g~~dg~v~iwd~~~  310 (737)
                      |+..-.....-..       ...-.+.-+..|+.+...|..+.|+|+..++ ++.+.|+.+.||.+..
T Consensus       345 Dls~ig~eq~~ed-------a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  345 DLSRIGEEQSPED-------AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             eccccccccChhh-------hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            9975432222111       1111122233355555579999999988764 5556699999999875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.92  E-value=1.6e-23  Score=202.50  Aligned_cols=258  Identities=18%  Similarity=0.260  Sum_probs=203.9

Q ss_pred             CCCcccccccccccccccccceeecccCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCeEE----EEEcccCccc
Q 004685           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSSRKLL----HSIETGHSAN   95 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~---g~~lasgs~dg~V~vwd~~~~~~~----~~~~~~h~~~   95 (737)
                      ++.+++.+++|+   .+++..+++.||.++|.+++|.-.   ...+++++.|.++++|-++.+...    +.. .+|...
T Consensus       120 tgsYDg~~riWd---~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~-~GHk~~  195 (423)
T KOG0313|consen  120 TGSYDGTSRIWD---LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVC-RGHKRS  195 (423)
T ss_pred             EeecCCeeEEEe---cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHh-cccccc
Confidence            467899999999   568889999999999998888643   246999999999999999876532    222 599999


Q ss_pred             eEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC---------------CCCCCCCCCceeeccCCCceeEEEEecCCC
Q 004685           96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR---------------GLDDNAITPSALYQCHTRRVKKLAVEVGNP  160 (737)
Q Consensus        96 V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~---------------~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  160 (737)
                      |-+++..++  +..+++|+.|..|+||+.......               ......-.|+..+.+|..+|.++.|++  .
T Consensus       196 V~sVsv~~s--gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~  271 (423)
T KOG0313|consen  196 VDSVSVDSS--GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--A  271 (423)
T ss_pred             eeEEEecCC--CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--C
Confidence            999999999  799999999999999993321110               011122356788999999999999987  4


Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCCC------------------CCCCCCCccceEEEeccCCcee-eccCCCCCccceEEE
Q 004685          161 HVVWSASEDGTLRQHDFRQGSSCP------------------PAGSSHQECRNILLDLRCGAKR-SLADPPKQTLSLKSC  221 (737)
Q Consensus       161 ~~l~s~s~Dg~I~vwdl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i  221 (737)
                      ..+++++.|.+|+.||+.++....                  .+..+..+....+||.+.+... ....+.+|...|.++
T Consensus       272 ~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv  351 (423)
T KOG0313|consen  272 TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV  351 (423)
T ss_pred             CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe
Confidence            678899999999999999887552                  2334445666778888776543 334677899999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC
Q 004685          222 DISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG  300 (737)
Q Consensus       222 ~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d  300 (737)
                      .|+|.+...|++++.|+++++||+|+.+ ++..+                    .+|.. .|.++.|. ++.+|++|+.|
T Consensus       352 kwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI--------------------~~h~D-Kvl~vdW~-~~~~IvSGGaD  409 (423)
T KOG0313|consen  352 KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI--------------------AGHND-KVLSVDWN-EGGLIVSGGAD  409 (423)
T ss_pred             ecCCCCceEEEEEecCCeEEEEEeccCCCcceee--------------------ccCCc-eEEEEecc-CCceEEeccCc
Confidence            9999999999999999999999999866 44443                    33433 69999997 55679999999


Q ss_pred             CeEEEEEcCC
Q 004685          301 EHVYLMDVNH  310 (737)
Q Consensus       301 g~v~iwd~~~  310 (737)
                      ++|+|+....
T Consensus       410 ~~l~i~~~~~  419 (423)
T KOG0313|consen  410 NKLRIFKGSP  419 (423)
T ss_pred             ceEEEecccc
Confidence            9999996543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=8.9e-23  Score=192.14  Aligned_cols=193  Identities=14%  Similarity=0.158  Sum_probs=129.2

Q ss_pred             EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEe-cCCCcEEE
Q 004685           86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVVW  164 (737)
Q Consensus        86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~~l~  164 (737)
                      ..|..+|.+-|+|+.|.+.  |..+++|+.|++|+|||.+..++.      +.+....+.|.+.|..+.|. |.-++.++
T Consensus         6 ~pi~s~h~DlihdVs~D~~--GRRmAtCSsDq~vkI~d~~~~s~~------W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA   77 (361)
T KOG2445|consen    6 APIDSGHKDLIHDVSFDFY--GRRMATCSSDQTVKIWDSTSDSGT------WSCTSSWRAHDGSIWRVVWAHPEFGQVVA   77 (361)
T ss_pred             cccccCCcceeeeeeeccc--CceeeeccCCCcEEEEeccCCCCc------eEEeeeEEecCCcEEEEEecCccccceEE
Confidence            3455789999999999999  899999999999999998654432      45567889999999999995 56678999


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEE
Q 004685          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLY  243 (737)
Q Consensus       165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iw  243 (737)
                      +|+.|+++.+|.-......     .+...    |       ............|+.++|.|.. +-.||+++.||.+|||
T Consensus        78 ~cS~Drtv~iWEE~~~~~~-----~~~~~----W-------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY  141 (361)
T KOG2445|consen   78 TCSYDRTVSIWEEQEKSEE-----AHGRR----W-------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY  141 (361)
T ss_pred             EEecCCceeeeeecccccc-----cccce----e-------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence            9999999999986422210     00000    0       1222333456789999999964 5579999999999999


Q ss_pred             ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC---CCEEEEEeCC-----CeEEEEEcCC
Q 004685          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSG-----EHVYLMDVNH  310 (737)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~---g~~l~~g~~d-----g~v~iwd~~~  310 (737)
                      +.-.--.+.......+       +..... ..+....+..|+.|+|.   ..+|++|+.+     +.++||....
T Consensus       142 EA~dp~nLs~W~Lq~E-------i~~~~~-pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e  208 (361)
T KOG2445|consen  142 EAPDPMNLSQWTLQHE-------IQNVID-PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE  208 (361)
T ss_pred             ecCCccccccchhhhh-------hhhccC-CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence            8754332222211000       000000 01112225788999873   4567777665     3666665544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=5.7e-23  Score=201.68  Aligned_cols=227  Identities=18%  Similarity=0.217  Sum_probs=187.5

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      ++.++.+.+++  ....+.+.+|+||+..|+.+.|+|+...+++++.|..|+||........... ..|..+|+.+..+|
T Consensus       237 GG~d~~av~~d--~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~-~~h~~~V~~ls~h~  313 (506)
T KOG0289|consen  237 GGEDKTAVLFD--KPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS-RPHEEPVTGLSLHP  313 (506)
T ss_pred             cCCCCceEEEe--cchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc-ccccccceeeeecc
Confidence            55666777777  5666788999999999999999999999999999999999999877766666 78999999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      .  |.+|++++.|++..+.|++.+....        ...-....-.+++.+|+| ++.+|.+|..|+.|++||+....  
T Consensus       314 t--geYllsAs~d~~w~Fsd~~~g~~lt--------~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~--  380 (506)
T KOG0289|consen  314 T--GEYLLSASNDGTWAFSDISSGSQLT--------VVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQT--  380 (506)
T ss_pred             C--CcEEEEecCCceEEEEEccCCcEEE--------EEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCcc--
Confidence            9  7999999999999999999743211        111111223589999999 67999999999999999999875  


Q ss_pred             CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (737)
                                             .+..+++|..+|..++|+.+ |.+|++++.|+.|++||+|..+.+.++...      
T Consensus       381 -----------------------~~a~Fpght~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt~~l~------  430 (506)
T KOG0289|consen  381 -----------------------NVAKFPGHTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKTIQLD------  430 (506)
T ss_pred             -----------------------ccccCCCCCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcccceeecc------
Confidence                                   35667789999999999986 799999999999999999988766665321      


Q ss_pred             ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                                    ....+.++.|.+.|.+|++++.|=.|++++-.+
T Consensus       431 --------------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~  463 (506)
T KOG0289|consen  431 --------------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT  463 (506)
T ss_pred             --------------ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence                          112499999999999999998777777776444

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.8e-23  Score=189.38  Aligned_cols=175  Identities=15%  Similarity=0.139  Sum_probs=135.2

Q ss_pred             EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEe-cCCCcEEE
Q 004685           86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVVW  164 (737)
Q Consensus        86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~~l~  164 (737)
                      .++...|.+.|.++...-.  |.+|++|+.|++|+|+.++...+.       ..+..+.+|.++|..++|. |.-+.+|+
T Consensus         4 q~idt~H~D~IHda~lDyy--gkrlATcsSD~tVkIf~v~~n~~s-------~ll~~L~Gh~GPVwqv~wahPk~G~iLA   74 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDYY--GKRLATCSSDGTVKIFEVRNNGQS-------KLLAELTGHSGPVWKVAWAHPKFGTILA   74 (299)
T ss_pred             eehhhhhhhhhhHhhhhhh--cceeeeecCCccEEEEEEcCCCCc-------eeeeEecCCCCCeeEEeecccccCcEee
Confidence            3444678899998887776  799999999999999999975442       3478999999999999994 56678999


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEE
Q 004685          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLY  243 (737)
Q Consensus       165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iw  243 (737)
                      ++++||.|.+|.-.+++-                       ........|...|++++|.|.+ +-+|++++.||.|.|.
T Consensus        75 ScsYDgkVIiWke~~g~w-----------------------~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl  131 (299)
T KOG1332|consen   75 SCSYDGKVIIWKEENGRW-----------------------TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL  131 (299)
T ss_pred             EeecCceEEEEecCCCch-----------------------hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEE
Confidence            999999999999777641                       1234455688899999999975 4578999999999999


Q ss_pred             ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC---C-----------CEEEEEeCCCeEEEEEcC
Q 004685          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---G-----------EEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~---g-----------~~l~~g~~dg~v~iwd~~  309 (737)
                      +.+....-.           ...      ....|.. .|++++|.|-   |           +.|++|+.|+.|+||+..
T Consensus       132 ~~~~~g~w~-----------t~k------i~~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~  193 (299)
T KOG1332|consen  132 TYDSSGGWT-----------TSK------IVFAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD  193 (299)
T ss_pred             EEcCCCCcc-----------chh------hhhcccc-ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence            998641100           000      0022333 4999999996   5           569999999999999877


Q ss_pred             C
Q 004685          310 H  310 (737)
Q Consensus       310 ~  310 (737)
                      +
T Consensus       194 ~  194 (299)
T KOG1332|consen  194 S  194 (299)
T ss_pred             C
Confidence            6

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.91  E-value=6e-23  Score=189.55  Aligned_cols=249  Identities=17%  Similarity=0.221  Sum_probs=196.4

Q ss_pred             cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC
Q 004685           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~  105 (737)
                      -+.+..+|.  .-.++.+.++.||+++|+|+..+.+.++|+||+.|.++++||+++|+++..+.  -..+|..+.|++. 
T Consensus        30 KD~~~~vw~--s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~-  104 (327)
T KOG0643|consen   30 KDSTPTVWY--SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFG-  104 (327)
T ss_pred             CCCCceEEE--ecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccC-
Confidence            356777887  45678899999999999999999999999999999999999999999999883  5789999999999 


Q ss_pred             CCCEEEEEEC-----CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004685          106 SDELVVSGAG-----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (737)
Q Consensus       106 ~~~~l~sgs~-----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~  180 (737)
                       |++++.+..     .+.|.++|++......   ...+|...+..+.+.++.+.|.| -+.+|++|..||.|..||++++
T Consensus       105 -gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~---~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g  179 (327)
T KOG0643|consen  105 -GNLILASTDKQMGYTCFVSVFDIRDDSSDI---DSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTG  179 (327)
T ss_pred             -CcEEEEEehhhcCcceEEEEEEccCChhhh---cccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccC
Confidence             677777654     4779999998543211   11345677777889999999999 5689999999999999999998


Q ss_pred             CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004685          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (737)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (737)
                      ...                        +.....|...|+.++++|+ ..++++++.|.+-++||.++...++++....+.
T Consensus       180 ~~~------------------------v~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv  234 (327)
T KOG0643|consen  180 KEL------------------------VDSDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLVDVRTLEVLKTYTTERPV  234 (327)
T ss_pred             cee------------------------eechhhhccccccccccCC-cceEEecccCccceeeeccceeeEEEeeecccc
Confidence            632                        3333456779999999998 589999999999999999998877766543321


Q ss_pred             CCC------------------------------cccccccc-----ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEE
Q 004685          261 PPC------------------------------VNYFCPMH-----LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL  305 (737)
Q Consensus       261 ~~~------------------------------~~~~~~~~-----~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~i  305 (737)
                      ...                              ...|.-..     -.-.+|.+ +|++++|||+|+-.++|+.||.|++
T Consensus       235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPdGksYsSGGEDG~VR~  313 (327)
T KOG0643|consen  235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPDGKSYSSGGEDGYVRL  313 (327)
T ss_pred             cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCCCcccccCCCCceEEE
Confidence            100                              00000000     01146666 8999999999999999999999999


Q ss_pred             EEcCC
Q 004685          306 MDVNH  310 (737)
Q Consensus       306 wd~~~  310 (737)
                      .-...
T Consensus       314 h~Fd~  318 (327)
T KOG0643|consen  314 HHFDS  318 (327)
T ss_pred             EEecc
Confidence            87665

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=1.5e-22  Score=189.12  Aligned_cols=224  Identities=15%  Similarity=0.207  Sum_probs=169.1

Q ss_pred             eecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe----------EEE----EEcccCccceEEEEEeeCCCCCE
Q 004685           45 ELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK----------LLH----SIETGHSANVFCTKFVPETSDEL  109 (737)
Q Consensus        45 ~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~----------~~~----~~~~~h~~~V~~v~~sp~~~~~~  109 (737)
                      ..+.|.+.|+++.+.+ .|+++++|+.||.|.|||++.-.          .++    ....+|...|.++.|-|.. ..+
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D-tGm  116 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID-TGM  116 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec-Cce
Confidence            3456899999999998 78999999999999999997532          111    1124788999999999975 568


Q ss_pred             EEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC--cEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 004685          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAG  187 (737)
Q Consensus       110 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~Dg~I~vwdl~~~~~~~~~~  187 (737)
                      |.+++.|.++++||.++.+.          ...+ ...+.|.+-+++|-..  .++++|..|-.|++.|+..+...    
T Consensus       117 FtssSFDhtlKVWDtnTlQ~----------a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----  181 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQE----------AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----  181 (397)
T ss_pred             eecccccceEEEeeccccee----------eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce----
Confidence            99999999999999997432          2233 3567788888888432  47888888999999999998632    


Q ss_pred             CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCCCCccc
Q 004685          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNY  266 (737)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~  266 (737)
                                           ....+|...|.++.|+|...-.|++|+.||.|++||+|.. ..+..+.....       
T Consensus       182 ---------------------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-------  233 (397)
T KOG4283|consen  182 ---------------------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-------  233 (397)
T ss_pred             ---------------------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC-------
Confidence                                 2334788899999999998888999999999999999864 22222211110       


Q ss_pred             cccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       267 ~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      ..+..+..+..+.+.+..++|+.+|.++++.+.|..+++|+..++.
T Consensus       234 k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  234 KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            0011111122233369999999999999999999999999999865

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=2.5e-22  Score=200.50  Aligned_cols=209  Identities=12%  Similarity=0.210  Sum_probs=160.6

Q ss_pred             cceeecccCCceEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEE
Q 004685           42 QERELEGHQGCVNAISWNSKGSLLISGSDDT--------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG  113 (737)
Q Consensus        42 ~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg--------~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg  113 (737)
                      ..+.+.||+..|.||+.+|+..++++|-.-|        .|+|||..+...+..+ ......|+|++|++...|.+|+..
T Consensus        96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~-g~f~~GV~~vaFsk~~~G~~l~~v  174 (626)
T KOG2106|consen   96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVI-GFFDRGVTCVAFSKINGGSLLCAV  174 (626)
T ss_pred             hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeee-ccccccceeeeecccCCCceEEEe
Confidence            3455679999999999999999999876555        4999999888888888 567789999999997767777665


Q ss_pred             --ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCC
Q 004685          114 --AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  191 (737)
Q Consensus       114 --s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~  191 (737)
                        +.+..+.+||......          ....+.....|....|+|.+++++++++. +.+.+|+++.+....       
T Consensus       175 D~s~~h~lSVWdWqk~~~----------~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k-------  236 (626)
T KOG2106|consen  175 DDSNPHMLSVWDWQKKAK----------LGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVK-------  236 (626)
T ss_pred             cCCCccccchhhchhhhc----------cCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEE-------
Confidence              3467789999986432          34445566778899999999999988886 799999998876331       


Q ss_pred             ccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccc
Q 004685          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (737)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (737)
                                   ...+...+.. ..|.|++|.+++  -++||.++|.|.||+.+..+..+..                 
T Consensus       237 -------------~~~~fek~ek-k~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~-----------------  283 (626)
T KOG2106|consen  237 -------------RQGIFEKREK-KFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQV-----------------  283 (626)
T ss_pred             -------------Eeeccccccc-eEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEe-----------------
Confidence                         0112222222 679999999963  7899999999999999765432221                 


Q ss_pred             ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004685          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD  307 (737)
Q Consensus       272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd  307 (737)
                         +.|.+ .|-+++.-.+|..| +|+.|.+|..||
T Consensus       284 ---~aH~g-gv~~L~~lr~Gtll-SGgKDRki~~Wd  314 (626)
T KOG2106|consen  284 ---HAHDG-GVFSLCMLRDGTLL-SGGKDRKIILWD  314 (626)
T ss_pred             ---eecCC-ceEEEEEecCccEe-ecCccceEEecc
Confidence               22444 59999999999855 599999999999

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.7e-23  Score=208.88  Aligned_cols=253  Identities=21%  Similarity=0.298  Sum_probs=199.6

Q ss_pred             cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCC
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD  107 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~  107 (737)
                      .++++|.  .......+++.-.+..|.++.|..||++||+|+..|.|+|+|+.+...+..+ .+|+.+|..+.|+|.. +
T Consensus        48 ~rvqly~--~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~d-~  123 (487)
T KOG0310|consen   48 VRVQLYS--SVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQD-N  123 (487)
T ss_pred             cEEEEEe--cchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-hhccCceeEEEecccC-C
Confidence            4566666  4445566777777889999999999999999999999999997776667777 7999999999999986 7


Q ss_pred             CEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 004685          108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (737)
Q Consensus       108 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~  187 (737)
                      ..|++|+.|+.+++||+.+..          ....+.+|++.|.|.+|+|.++++++|||+||.|++||.+.....    
T Consensus       124 t~l~s~sDd~v~k~~d~s~a~----------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~----  189 (487)
T KOG0310|consen  124 TMLVSGSDDKVVKYWDLSTAY----------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR----  189 (487)
T ss_pred             eEEEecCCCceEEEEEcCCcE----------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce----
Confidence            889999999999999998632          144788999999999999999999999999999999999986411    


Q ss_pred             CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (737)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (737)
                               +..            ..|..+|..+.+-|. +.++++++. ..+++||+-++.......            
T Consensus       190 ---------v~e------------lnhg~pVe~vl~lps-gs~iasAgG-n~vkVWDl~~G~qll~~~------------  234 (487)
T KOG0310|consen  190 ---------VVE------------LNHGCPVESVLALPS-GSLIASAGG-NSVKVWDLTTGGQLLTSM------------  234 (487)
T ss_pred             ---------eEE------------ecCCCceeeEEEcCC-CCEEEEcCC-CeEEEEEecCCceehhhh------------
Confidence                     111            135678899999996 578888874 689999998654322110            


Q ss_pred             ccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCC
Q 004685          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI  342 (737)
Q Consensus       268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  342 (737)
                             ..|.. .|+|+++..++..|++|+-|+.|++||+.+-+ .........++-.++.+|+...+......
T Consensus       235 -------~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K-vv~s~~~~~pvLsiavs~dd~t~viGmsn  300 (487)
T KOG0310|consen  235 -------FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK-VVHSWKYPGPVLSIAVSPDDQTVVIGMSN  300 (487)
T ss_pred             -------hcccc-eEEEEEeecCCceEeecccccceEEEEccceE-EEEeeecccceeeEEecCCCceEEEeccc
Confidence                   11333 69999999999999999999999999977643 33344456777788888876655554433

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=2.3e-22  Score=204.63  Aligned_cols=216  Identities=16%  Similarity=0.270  Sum_probs=157.2

Q ss_pred             eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004685           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd  123 (737)
                      ..++||++.|.||+..|.|.+||+|+.||+|+||.+.++.++.++.  ..+.|.||+|+|..+-.+|++ .....+.|-+
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAv-A~~~~~~ivn  470 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAV-AVGECVLIVN  470 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEE-EecCceEEeC
Confidence            4578999999999999999999999999999999999999999984  567999999999863334444 4444466655


Q ss_pred             cCCCCCCCC------------CCC------CC---------CCceeeccCCCceeEEEEecCCCcEEEEEeCC---CcEE
Q 004685          124 LSRFSGRGL------------DDN------AI---------TPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GTLR  173 (737)
Q Consensus       124 ~~~~~~~~~------------~~~------~~---------~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D---g~I~  173 (737)
                      ..-++....            ...      .+         .-+...-.|...|..+.|+. .+.||++...+   ..|.
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEE
Confidence            443211000            000      00         01223445888999999998 66888887654   5788


Q ss_pred             EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004685          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (737)
Q Consensus       174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~  253 (737)
                      |+++......                         ..+....+.+.++.|+|..+ +|++++ ...|+|||+.....+..
T Consensus       550 iHQLSK~~sQ-------------------------~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqelvKk  602 (733)
T KOG0650|consen  550 IHQLSKRKSQ-------------------------SPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQELVKK  602 (733)
T ss_pred             EEeccccccc-------------------------CchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHHHHHH
Confidence            8888776522                         22223456789999999864 555555 47899999987655544


Q ss_pred             ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +..                     ...+|..++.+|.|..|+.|+.|+.+..||+.-.
T Consensus       603 L~t---------------------g~kwiS~msihp~GDnli~gs~d~k~~WfDldls  639 (733)
T KOG0650|consen  603 LLT---------------------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS  639 (733)
T ss_pred             Hhc---------------------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence            421                     1126999999999999999999999999998863

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.1e-21  Score=184.54  Aligned_cols=165  Identities=18%  Similarity=0.193  Sum_probs=129.3

Q ss_pred             EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (737)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  163 (737)
                      .-+.| ......|+++.|+++  |.++++++.|.+|+|||...+..          +.++..+.-.+..+.|.. ....+
T Consensus         6 ~ak~f-~~~~~~i~sl~fs~~--G~~litss~dDsl~LYd~~~g~~----------~~ti~skkyG~~~~~Fth-~~~~~   71 (311)
T KOG1446|consen    6 PAKVF-RETNGKINSLDFSDD--GLLLITSSEDDSLRLYDSLSGKQ----------VKTINSKKYGVDLACFTH-HSNTV   71 (311)
T ss_pred             ccccc-ccCCCceeEEEecCC--CCEEEEecCCCeEEEEEcCCCce----------eeEeecccccccEEEEec-CCceE
Confidence            33445 456789999999999  89999999999999999987433          556665666778888876 33555


Q ss_pred             EEEeC--CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEE
Q 004685          164 WSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  241 (737)
Q Consensus       164 ~s~s~--Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~  241 (737)
                      +.++.  |.+|+..++.+.+                         .+.-+++|...|++++.+|-+ ..+++++.|++||
T Consensus        72 i~sStk~d~tIryLsl~dNk-------------------------ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvr  125 (311)
T KOG1446|consen   72 IHSSTKEDDTIRYLSLHDNK-------------------------YLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVR  125 (311)
T ss_pred             EEccCCCCCceEEEEeecCc-------------------------eEEEcCCCCceEEEEEecCCC-CeEEecccCCeEE
Confidence            55555  8899999998876                         355677899999999999975 8999999999999


Q ss_pred             EEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +||+|..+....+..                     .  .-..++|+|+|-+++++...+.|++||+++-
T Consensus       126 LWDlR~~~cqg~l~~---------------------~--~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen  126 LWDLRVKKCQGLLNL---------------------S--GRPIAAFDPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             eeEecCCCCceEEec---------------------C--CCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence            999996543222110                     0  1334899999999999999889999999984

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=4.4e-22  Score=197.24  Aligned_cols=208  Identities=20%  Similarity=0.263  Sum_probs=169.6

Q ss_pred             ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EEc----------------ccCccceEEEEEeeCC
Q 004685           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SIE----------------TGHSANVFCTKFVPET  105 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~-~~~----------------~~h~~~V~~v~~sp~~  105 (737)
                      +..+..|.-+|.||+++|+.++.++++.|++|.-|++.+++... .+.                ..|...+.+++.+++ 
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D-  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD-  213 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-
Confidence            56677899999999999999999999999999999998876431 110                267888999999999 


Q ss_pred             CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 004685          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (737)
Q Consensus       106 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~  185 (737)
                       +.+|++|+.|..|.||+.++.          ++++.+.+|.+.|.+++|-. +.+.|++++.|++|++|++....    
T Consensus       214 -gkylatgg~d~~v~Iw~~~t~----------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s----  277 (479)
T KOG0299|consen  214 -GKYLATGGRDRHVQIWDCDTL----------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS----  277 (479)
T ss_pred             -CcEEEecCCCceEEEecCccc----------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH----
Confidence             899999999999999999974          34778999999999999987 77888899999999999998764    


Q ss_pred             CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcc
Q 004685          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (737)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (737)
                                           .+.++.+|...|.++..... +..+.+|+.|+++++|++.....+.-            
T Consensus       278 ---------------------~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqlif------------  323 (479)
T KOG0299|consen  278 ---------------------YVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLIF------------  323 (479)
T ss_pred             ---------------------HHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccceeee------------
Confidence                                 34555678888888887764 56777778999999999954321110            


Q ss_pred             ccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       266 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                               .++.+ .+-|++|-.+ ..+++|+.+|.|.+|++.+.+
T Consensus       324 ---------rg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  324 ---------RGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKKK  359 (479)
T ss_pred             ---------eCCCC-CeeeEEEecc-cceeeccCCceEEEeeecccC
Confidence                     22322 4888998765 468999999999999998843

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.90  E-value=2.4e-21  Score=197.88  Aligned_cols=231  Identities=17%  Similarity=0.238  Sum_probs=157.1

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEE-----EEEcccCccceE
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLL-----HSIETGHSANVF   97 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~-----~~~~~~h~~~V~   97 (737)
                      ++--+-+.+.. ..++-+.+..|.+|.+.|+.+.|+| +..+||||+.|..|+||.+..+-..     .....+..-.|.
T Consensus        54 G~~lgvlPl~~-~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE  132 (1012)
T KOG1445|consen   54 GGKLGVLPLTA-KGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVE  132 (1012)
T ss_pred             CceEEEEeccc-cCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEE
Confidence            33344444443 3445567778899999999999999 6779999999999999999854221     112134456789


Q ss_pred             EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004685           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (737)
Q Consensus        98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl  177 (737)
                      |+.|+|.. ..+++++ ..|+++|||+.+.          +....+.+|.+.|.++.|+. ++.+|++++.|+.|+|||-
T Consensus       133 ~l~fHpTa-Dgil~s~-a~g~v~i~D~stq----------k~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDP  199 (1012)
T KOG1445|consen  133 CLRFHPTA-DGILASG-AHGSVYITDISTQ----------KTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDP  199 (1012)
T ss_pred             EeecccCc-CceEEec-cCceEEEEEcccC----------ceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCC
Confidence            99999986 4455554 5799999999863          33678889999999999998 6799999999999999999


Q ss_pred             CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC----CcEEEEECCCCC-Ccc
Q 004685          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLP-PLT  252 (737)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D----g~i~iwd~~~~~-~~~  252 (737)
                      +..........+|+..                       .=..+.|..+-. .|++.+.+    ..|++||.+... +++
T Consensus       200 Ra~~~piQ~te~H~~~-----------------------rdsRv~w~Gn~~-rlisTGF~~~R~reV~~~Dtr~f~~p~~  255 (1012)
T KOG1445|consen  200 RASMEPIQTTEGHGGM-----------------------RDSRVLWAGNWE-RLISTGFTTKRIREVRAYDTRKFGAPVH  255 (1012)
T ss_pred             ccCCCccccccccccc-----------------------hhheeeeccchh-hhhhcccchhhheeeeeeeccccCCcce
Confidence            9875442222222211                       112234443322 34444433    568899998643 222


Q ss_pred             cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCC
Q 004685          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG  312 (737)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~  312 (737)
                      ++..                    .....|.---|.||.++|+.++. +.+++++.+...+
T Consensus       256 tlel--------------------d~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q  296 (1012)
T KOG1445|consen  256 TLEL--------------------DSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ  296 (1012)
T ss_pred             eEEe--------------------ecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence            2211                    11112555678999887776665 8899999988743

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.5e-22  Score=200.98  Aligned_cols=233  Identities=13%  Similarity=0.104  Sum_probs=171.0

Q ss_pred             CCCcccccccccccccccccceeeccc-CCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEEcccCccceEEEE
Q 004685           23 RPDVNHSLQMHSSLVRRLSQERELEGH-QGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTK  100 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H-~~~V~~l~~s~~g~~lasgs-~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~  100 (737)
                      +.....++.+|+  .+++....++++- ...-.++.. -++++++++. .-..|.+|.+......... .--.++|.|++
T Consensus        13 sS~d~~~~~~~d--l~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~q~-~v~Pg~v~al~   88 (476)
T KOG0646|consen   13 SSFDPINCIVWD--LRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVVQY-IVLPGPVHALA   88 (476)
T ss_pred             cCCCCcceeEEe--cCCCceeEEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhhhh-cccccceeeee
Confidence            334455677777  4555555555543 111111111 1235666664 4457899998876544422 23568899999


Q ss_pred             EeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004685          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (737)
Q Consensus       101 ~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~  180 (737)
                      -+|.  |.+|+.|+..|.|++|.+.++..          +..+.+|-..|+|+.|+- ++.+|+|||.||.|.+|.+..-
T Consensus        89 s~n~--G~~l~ag~i~g~lYlWelssG~L----------L~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   89 SSNL--GYFLLAGTISGNLYLWELSSGIL----------LNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             cCCC--ceEEEeecccCcEEEEEeccccH----------HHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEee
Confidence            9999  78999888999999999997542          677789999999999998 6688999999999999998653


Q ss_pred             CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCcccccCCCC
Q 004685          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (737)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~  259 (737)
                      -..                .+...+..+..+..|..+|+++...+.+ ...++|++.|.++++||+..+..+.++..+  
T Consensus       156 v~a----------------~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp--  217 (476)
T KOG0646|consen  156 VSA----------------DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP--  217 (476)
T ss_pred             ccc----------------ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC--
Confidence            211                1112334556667899999999887642 358999999999999999998877665321  


Q ss_pred             CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                                          ..+.+++.+|-++.+++|+.+|.|.+.++..
T Consensus       218 --------------------~si~av~lDpae~~~yiGt~~G~I~~~~~~~  248 (476)
T KOG0646|consen  218 --------------------SSIKAVALDPAERVVYIGTEEGKIFQNLLFK  248 (476)
T ss_pred             --------------------CcceeEEEcccccEEEecCCcceEEeeehhc
Confidence                                2599999999999999999999999998876

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.4e-21  Score=184.82  Aligned_cols=162  Identities=15%  Similarity=0.219  Sum_probs=128.9

Q ss_pred             EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC-cEE
Q 004685           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVV  163 (737)
Q Consensus        85 ~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~~l  163 (737)
                      +..+ ..|..+|++++.+    +.++++|+.|-+|+|||++....          +..+..|.+.|+++.|.+.-. ..|
T Consensus        36 lF~~-~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~~q----------lg~ll~HagsitaL~F~~~~S~shL  100 (362)
T KOG0294|consen   36 LFAF-SAHAGSITALAVS----GPYVASGSSDETIHIYDMRKRKQ----------LGILLSHAGSITALKFYPPLSKSHL  100 (362)
T ss_pred             cccc-cccccceeEEEec----ceeEeccCCCCcEEEEeccchhh----------hcceeccccceEEEEecCCcchhhe
Confidence            3445 6899999999997    56999999999999999996432          567778999999999987332 267


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw  243 (737)
                      ++|+.||.|.+|+.....                         .+...+.|...|+.++.+|. +.+-++.+.|+.+++|
T Consensus       101 lS~sdDG~i~iw~~~~W~-------------------------~~~slK~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~W  154 (362)
T KOG0294|consen  101 LSGSDDGHIIIWRVGSWE-------------------------LLKSLKAHKGQVTDLSIHPS-GKLALSVGGDQVLRTW  154 (362)
T ss_pred             eeecCCCcEEEEEcCCeE-------------------------EeeeecccccccceeEecCC-CceEEEEcCCceeeee
Confidence            799999999999988764                         35556678889999999997 5888899999999999


Q ss_pred             ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      |+-.++.-..+..                   .+   .-+.|.|+|.|.+++.+..+ .|-+|.+.+
T Consensus       155 NLV~Gr~a~v~~L-------------------~~---~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~  198 (362)
T KOG0294|consen  155 NLVRGRVAFVLNL-------------------KN---KATLVSWSPQGDHFVVSGRN-KIDIYQLDN  198 (362)
T ss_pred             hhhcCccceeecc-------------------CC---cceeeEEcCCCCEEEEEecc-EEEEEeccc
Confidence            9987763222110                   01   14459999999999988877 788888776

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=4.2e-23  Score=194.05  Aligned_cols=140  Identities=16%  Similarity=0.232  Sum_probs=104.4

Q ss_pred             eeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC---CCCCCCCCCccceEEEeccCCceeeccCCCCCccc
Q 004685          141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS---CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  217 (737)
Q Consensus       141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (737)
                      ..+..|.+++.+.+|+| ++.++++|+.|.+|+++|+..-..   +.....+...          .....+.++..|...
T Consensus       106 ~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~q----------a~hPvIRTlYDH~de  174 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQ----------ARHPVIRTLYDHVDE  174 (430)
T ss_pred             EEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcc----------cCCceEeehhhccCc
Confidence            45667999999999999 679999999999999999873211   1111111111          112345667788999


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE
Q 004685          218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  297 (737)
Q Consensus       218 v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g  297 (737)
                      |+++.|+|. ...|++|+.|++|++||+........+          +.|         ....+|.++.|+|.|.+|++|
T Consensus       175 vn~l~FHPr-e~ILiS~srD~tvKlFDfsK~saKrA~----------K~~---------qd~~~vrsiSfHPsGefllvg  234 (430)
T KOG0640|consen  175 VNDLDFHPR-ETILISGSRDNTVKLFDFSKTSAKRAF----------KVF---------QDTEPVRSISFHPSGEFLLVG  234 (430)
T ss_pred             ccceeecch-hheEEeccCCCeEEEEecccHHHHHHH----------HHh---------hccceeeeEeecCCCceEEEe
Confidence            999999997 589999999999999999753321111          111         112269999999999999999


Q ss_pred             eCCCeEEEEEcCCC
Q 004685          298 YSGEHVYLMDVNHA  311 (737)
Q Consensus       298 ~~dg~v~iwd~~~~  311 (737)
                      ....++++||+.+-
T Consensus       235 TdHp~~rlYdv~T~  248 (430)
T KOG0640|consen  235 TDHPTLRLYDVNTY  248 (430)
T ss_pred             cCCCceeEEeccce
Confidence            99999999999984

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.8e-22  Score=207.62  Aligned_cols=215  Identities=20%  Similarity=0.290  Sum_probs=169.0

Q ss_pred             ccCCceE---EEEEcC-CCCEEEEEeCCCcEEEEECCCCe------EEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685           48 GHQGCVN---AISWNS-KGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (737)
Q Consensus        48 ~H~~~V~---~l~~s~-~g~~lasgs~dg~V~vwd~~~~~------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  117 (737)
                      .|...|.   ++..+. ++++|+||+.||.|++|+.....      .+..+ ..|.+.|+.+....+  +..|++++.|-
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~--~~tlIS~SsDt   95 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGN--GKTLISASSDT   95 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcC--CCceEEecCCc
Confidence            3455555   445544 67789999999999999986532      35566 689999999999988  68999999999


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      +|++|+......        .+..++..|.+.|.|++.-..+..++|+||.|+.|.+||+.++... .+.          
T Consensus        96 TVK~W~~~~~~~--------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~-l~~----------  156 (735)
T KOG0308|consen   96 TVKVWNAHKDNT--------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT-LVA----------  156 (735)
T ss_pred             eEEEeecccCcc--------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh-hhh----------
Confidence            999999986432        2367888999999999994447789999999999999999987420 000          


Q ss_pred             EeccCCceeeccCCC-CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004685          198 LDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (737)
                         .... ....... ++...|++++.++. +..|+.|+..+.|++||.++.+.+..+                    .|
T Consensus       157 ---s~n~-~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~kimkL--------------------rG  211 (735)
T KOG0308|consen  157 ---SFNN-VTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKL--------------------RG  211 (735)
T ss_pred             ---hccc-cccccCCCCCccceeeeecCCc-ceEEEecCcccceEEeccccccceeee--------------------ec
Confidence               0000 1112222 67789999999997 589999999999999999998866554                    34


Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      |.. .|..+..++||..+++++.||+|++||+..
T Consensus       212 HTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgq  244 (735)
T KOG0308|consen  212 HTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQ  244 (735)
T ss_pred             ccc-ceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence            555 499999999999999999999999999876

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.9e-22  Score=192.19  Aligned_cols=250  Identities=19%  Similarity=0.249  Sum_probs=170.1

Q ss_pred             hhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeEE
Q 004685           12 YDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------RKLL   85 (737)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~------~~~~   85 (737)
                      ..+|-++++..-...-++.+-..  ..+.-..+-+.+|.+.|++|.|+.++++||+|+.|-.++||+++.      .+.+
T Consensus        20 ~~FL~QR~i~~~~~~~k~F~~~~--~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI   97 (609)
T KOG4227|consen   20 ESFLCQREIGSVKSVVKTFRPDF--QHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI   97 (609)
T ss_pred             eeeeeecccCCChhhhhhhchhh--hhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc
Confidence            34556666655544433333222  224445567889999999999999999999999999999999864      2455


Q ss_pred             EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004685           86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  165 (737)
Q Consensus        86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  165 (737)
                      ......|.+.|.|++|...  ..+|++|..+++|.+.|+.+.+..        .+.......+.|+.+..+|. .+.|++
T Consensus        98 ~~~~~~H~SNIF~L~F~~~--N~~~~SG~~~~~VI~HDiEt~qsi--------~V~~~~~~~~~VY~m~~~P~-DN~~~~  166 (609)
T KOG4227|consen   98 GVMEHPHRSNIFSLEFDLE--NRFLYSGERWGTVIKHDIETKQSI--------YVANENNNRGDVYHMDQHPT-DNTLIV  166 (609)
T ss_pred             eeccCccccceEEEEEccC--CeeEecCCCcceeEeeecccceee--------eeecccCcccceeecccCCC-CceEEE
Confidence            5554456789999999987  589999999999999999864321        12222233458999999996 589999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~  245 (737)
                      .+.++.|.+||.+........          +         ...   ........+.|+|..+.+|++.+..+-+.+||+
T Consensus       167 ~t~~~~V~~~D~Rd~~~~~~~----------~---------~~A---N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~  224 (609)
T KOG4227|consen  167 VTRAKLVSFIDNRDRQNPISL----------V---------LPA---NSGKNFYTAEFHPETPALILVNSETGGPNVFDR  224 (609)
T ss_pred             EecCceEEEEeccCCCCCCce----------e---------eec---CCCccceeeeecCCCceeEEeccccCCCCceee
Confidence            999999999999987622000          0         011   112355778999999999999999999999999


Q ss_pred             CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +....-            +..+. ..+. -........++.|+|+|..|++--....-.+||+.+
T Consensus       225 R~~~~~------------~~~~~-~~~~-L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S  275 (609)
T KOG4227|consen  225 RMQARP------------VYQRS-MFKG-LPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS  275 (609)
T ss_pred             ccccch------------HHhhh-cccc-CcccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence            864310            00000 0000 001111256788999998877665554445555554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.89  E-value=1.5e-22  Score=202.63  Aligned_cols=275  Identities=14%  Similarity=0.167  Sum_probs=199.5

Q ss_pred             CCCccccccccccccc--ccccceeecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-----------
Q 004685           23 RPDVNHSLQMHSSLVR--RLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-----------   88 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~--~~~~~~~l~~-H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~-----------   88 (737)
                      +++++-+|++||..--  +++-.+.|.. ....|++++|++.|..|++.+..-+.+|+|-+..+.....           
T Consensus       184 sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~n  263 (641)
T KOG0772|consen  184 SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYN  263 (641)
T ss_pred             eccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhc
Confidence            4778899999995322  2222333332 2347999999999998888887889999997654443322           


Q ss_pred             cccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCce--eeccCCCceeEEEEecCCCcEEEEE
Q 004685           89 ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA--LYQCHTRRVKKLAVEVGNPHVVWSA  166 (737)
Q Consensus        89 ~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~p~~~~~l~s~  166 (737)
                      .++|...++|.+|+|.. ...|++++.||+++|||+.....+.      +.+.  ...+..-+++.++|++ ++.+||+|
T Consensus       264 TKGHia~lt~g~whP~~-k~~FlT~s~DgtlRiWdv~~~k~q~------qVik~k~~~g~Rv~~tsC~~nr-dg~~iAag  335 (641)
T KOG0772|consen  264 TKGHIAELTCGCWHPDN-KEEFLTCSYDGTLRIWDVNNTKSQL------QVIKTKPAGGKRVPVTSCAWNR-DGKLIAAG  335 (641)
T ss_pred             cCCceeeeeccccccCc-ccceEEecCCCcEEEEecCCchhhe------eEEeeccCCCcccCceeeecCC-Ccchhhhc
Confidence            15899999999999997 7889999999999999998644321      1111  1123345789999999 66889999


Q ss_pred             eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004685          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (737)
Q Consensus       167 s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~  246 (737)
                      +.||+|.+|+.......+                    ...+..-......|+|+.|+++ +++|++-+.|+.+++||++
T Consensus       336 c~DGSIQ~W~~~~~~v~p--------------------~~~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  336 CLDGSIQIWDKGSRTVRP--------------------VMKVKDAHLPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             ccCCceeeeecCCccccc--------------------ceEeeeccCCCCceeEEEeccc-cchhhhccCCCceeeeecc
Confidence            999999999985543110                    0111111122348999999997 6999999999999999999


Q ss_pred             CCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC------CCeEEEEEcCCCCcceeeeec
Q 004685          247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHAGGRAMRYTV  320 (737)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~------dg~v~iwd~~~~~~~~~~~~~  320 (737)
                      ..+.            ++..+...      ....+-+.++|||+.++|++|+.      .|.+++||..+...+..+...
T Consensus       395 q~kk------------pL~~~tgL------~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~  456 (641)
T KOG0772|consen  395 QFKK------------PLNVRTGL------PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS  456 (641)
T ss_pred             cccc------------chhhhcCC------CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence            7651            22221111      11224677999999999999976      468999999998888887777


Q ss_pred             CCCCeeeeeccCCCCccCCCCCCC
Q 004685          321 GDASKIMSFTPTLNGLELQPPIHD  344 (737)
Q Consensus       321 ~~~~~~~~~~p~~~~~~~~~~~~~  344 (737)
                      +..+..+.|+|.++.+-.....+.
T Consensus       457 ~aSvv~~~WhpkLNQi~~gsgdG~  480 (641)
T KOG0772|consen  457 TASVVRCLWHPKLNQIFAGSGDGT  480 (641)
T ss_pred             CceEEEEeecchhhheeeecCCCc
Confidence            888888999999998877666543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=4e-22  Score=206.41  Aligned_cols=297  Identities=16%  Similarity=0.180  Sum_probs=212.6

Q ss_pred             hccccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCe---------
Q 004685           16 DTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRK---------   83 (737)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g---~~lasgs~dg~V~vwd~~~~~---------   83 (737)
                      ....+...++.+..+.++.....+++....++||.+-|.+|+|...+   -+||++++|..||||.+.-+.         
T Consensus       157 ~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~  236 (764)
T KOG1063|consen  157 NKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED  236 (764)
T ss_pred             CCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc
Confidence            34556777888889999998888999999999999999999998744   389999999999999874322         


Q ss_pred             ---------------EEE------EEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC----------
Q 004685           84 ---------------LLH------SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL----------  132 (737)
Q Consensus        84 ---------------~~~------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~----------  132 (737)
                                     .+.      .+..+|++.|.++.|+|.  +..|++++.|.++.+|......+.-.          
T Consensus       237 ~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg  314 (764)
T KOG1063|consen  237 SLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPE--GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG  314 (764)
T ss_pred             ccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccc--hhhheecccCcceEEEecCCccceEEEEEEeecccc
Confidence                           111      122599999999999999  67899999999999998775322100          


Q ss_pred             --------------------------------CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004685          133 --------------------------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (737)
Q Consensus       133 --------------------------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~  180 (737)
                                                      +...+.......+|.+.|.++.|+| .+.+|++.+.|.+-++|---..
T Consensus       315 ~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~  393 (764)
T KOG1063|consen  315 SAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGR  393 (764)
T ss_pred             cccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeeccccc
Confidence                                            0011122344568999999999999 5689999999999999864422


Q ss_pred             CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-----------
Q 004685          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-----------  249 (737)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-----------  249 (737)
                      + .                    .-..+..+..|...++|++|-+. ...|++|.+...+|+|+....-           
T Consensus       394 q-~--------------------~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~  451 (764)
T KOG1063|consen  394 Q-Q--------------------EWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKC  451 (764)
T ss_pred             c-c--------------------ceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCcc
Confidence            1 0                    12346666778889999999985 4689999999999999863210           


Q ss_pred             --Cc-----------------ccccCCCC--------------CCCCccccc------------cccccCCCCcccceeE
Q 004685          250 --PL-----------------TSCQKRMS--------------PPPCVNYFC------------PMHLSEHGRSSLHLTH  284 (737)
Q Consensus       250 --~~-----------------~~~~~~~~--------------~~~~~~~~~------------~~~~~~~~~~~~~i~~  284 (737)
                        ..                 ..++....              ...+...-.            |..-.-+||.. .|.+
T Consensus       452 ~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGy-Ev~~  530 (764)
T KOG1063|consen  452 FKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGY-EVYA  530 (764)
T ss_pred             ccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCce-eEEE
Confidence              00                 00000000              000000000            11111134543 6999


Q ss_pred             EEEcCCCCEEEEEeCC-----CeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004685          285 VTFSPNGEEVLLSYSG-----EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (737)
Q Consensus       285 v~~sp~g~~l~~g~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  338 (737)
                      ++.+|+|+++++++..     ..|++|+..+......+..|.-.++.++|+|+.+-+..
T Consensus       531 l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLs  589 (764)
T KOG1063|consen  531 LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLS  589 (764)
T ss_pred             EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEE
Confidence            9999999999999874     47999999998888889999999999999998654433

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=1.2e-22  Score=195.06  Aligned_cols=223  Identities=16%  Similarity=0.265  Sum_probs=180.1

Q ss_pred             CCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEE
Q 004685           21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK  100 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~  100 (737)
                      -.+++.|+.|++|+  +..-....+|+.|.+.|..|++..  +.+++++.|++|+.|-++. ...+++  ..+..+..+.
T Consensus        82 ~aSGs~DG~VkiWn--lsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~ti--lg~s~~~gId  154 (433)
T KOG0268|consen   82 VASGSCDGEVKIWN--LSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTI--LGKSVYLGID  154 (433)
T ss_pred             hhccccCceEEEEe--hhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceee--eccccccccc
Confidence            45688999999999  444567889999999999999986  7799999999999999876 466666  2456777887


Q ss_pred             EeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004685          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (737)
Q Consensus       101 ~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~  180 (737)
                      -+..  ++.+++|+.  .|.|||....          .|+..+.--.+.|.++.|+|....+|++|..|++|.+||+++.
T Consensus       155 h~~~--~~~FaTcGe--~i~IWD~~R~----------~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~  220 (433)
T KOG0268|consen  155 HHRK--NSVFATCGE--QIDIWDEQRD----------NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA  220 (433)
T ss_pred             cccc--cccccccCc--eeeecccccC----------CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC
Confidence            7766  588999986  4899999752          4577787778899999999988889999999999999999999


Q ss_pred             CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004685          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (737)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (737)
                      .+..          .++..                ..-+.|+|+| +...|++++.|..++.||++..+.          
T Consensus       221 ~Pl~----------KVi~~----------------mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~----------  263 (433)
T KOG0268|consen  221 SPLK----------KVILT----------------MRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSR----------  263 (433)
T ss_pred             Cccc----------eeeee----------------ccccceecCc-cccceeeccccccceehhhhhhcc----------
Confidence            8652          22222                2346799999 578999999999999999997651          


Q ss_pred             CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                        ++..        +..+...|.+|+|||.|+.+++|+.|.+|+||.+..+
T Consensus       264 --p~~v--------~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  264 --PLNV--------HKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             --cchh--------hcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence              1111        2233336999999999999999999999999998875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=5.8e-22  Score=180.81  Aligned_cols=241  Identities=16%  Similarity=0.160  Sum_probs=188.7

Q ss_pred             CCCCCccccccccccccccc-ccceeecccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeE--EEEEcccCccc
Q 004685           21 DTRPDVNHSLQMHSSLVRRL-SQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSAN   95 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~H~~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~~~--~~~~~~~h~~~   95 (737)
                      ....+.|++|++....-... +++.+|+||.+||..++|..  -|.+||+++.||+|.||.-++++-  ...+ ..|...
T Consensus        26 lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~S  104 (299)
T KOG1332|consen   26 LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSAS  104 (299)
T ss_pred             eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-hhhccc
Confidence            34567789999988655554 78899999999999999976  799999999999999999888753  3334 679999


Q ss_pred             eEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-------------CcE
Q 004685           96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-------------PHV  162 (737)
Q Consensus        96 V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-------------~~~  162 (737)
                      |++++|.|...|-.|++++.||.|.|.+.+...+-       ........|.-.|++++|.|..             .+.
T Consensus       105 VNsV~wapheygl~LacasSDG~vsvl~~~~~g~w-------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr  177 (299)
T KOG1332|consen  105 VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW-------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR  177 (299)
T ss_pred             ceeecccccccceEEEEeeCCCcEEEEEEcCCCCc-------cchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence            99999999877889999999999999999864221       2245567899999999999841             146


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC---CcEEEEEeCCCc
Q 004685          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---PHLLLVGGSDAF  239 (737)
Q Consensus       163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---~~~l~t~s~Dg~  239 (737)
                      |++|+.|..|++|+...+.-.                       .-.++.+|...|..++|.|..   ..+||+|+.||+
T Consensus       178 lvSgGcDn~VkiW~~~~~~w~-----------------------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~  234 (299)
T KOG1332|consen  178 LVSGGCDNLVKIWKFDSDSWK-----------------------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT  234 (299)
T ss_pred             eeccCCccceeeeecCCcchh-----------------------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence            999999999999999876421                       122356789999999999964   247999999999


Q ss_pred             EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +.||-.+....  ...     ...+..           ....+..+.||+.|..|++++.|+.|.+|.-..
T Consensus       235 viIwt~~~e~e--~wk-----~tll~~-----------f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  235 VIIWTKDEEYE--PWK-----KTLLEE-----------FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EEEEEecCccC--ccc-----cccccc-----------CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            99998762210  000     011111           122589999999999999999999999997654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.89  E-value=9.7e-21  Score=189.26  Aligned_cols=282  Identities=13%  Similarity=0.163  Sum_probs=193.7

Q ss_pred             cccccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEE---EcccCccceEEEEE
Q 004685           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHS---IETGHSANVFCTKF  101 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~---~~~~h~~~V~~v~~  101 (737)
                      -++-+.+|+  -++.+.....+.-++.|....|+| +.+++++++. +.+..|+.+++...+.   |.+.....|.|++|
T Consensus       178 ~~h~lSVWd--Wqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F  254 (626)
T KOG2106|consen  178 NPHMLSVWD--WQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF  254 (626)
T ss_pred             Cccccchhh--chhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence            345566666  444455555556678899999999 5567777776 7999999998865543   32233478999999


Q ss_pred             eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 004685          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (737)
Q Consensus       102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~  181 (737)
                      .++   .-+++|..+|.|.||+.....          ..+....|.+.|.++.... ++.+| +|+.|+.|..||-. .+
T Consensus       255 ~en---gdviTgDS~G~i~Iw~~~~~~----------~~k~~~aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~-y~  318 (626)
T KOG2106|consen  255 LEN---GDVITGDSGGNILIWSKGTNR----------ISKQVHAHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDN-YR  318 (626)
T ss_pred             cCC---CCEEeecCCceEEEEeCCCce----------EEeEeeecCCceEEEEEec-CccEe-ecCccceEEecccc-cc
Confidence            998   358899999999999986421          2334448999999999987 54555 79999999999932 22


Q ss_pred             CCCCCC-CCC--------CccceEEEeccCCceee-------ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685          182 SCPPAG-SSH--------QECRNILLDLRCGAKRS-------LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       182 ~~~~~~-~~~--------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~  245 (737)
                      ....+. ...        +....+++....+.+..       -....+|......++.+|+. +.++|++.|+.+++|+ 
T Consensus       319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~-  396 (626)
T KOG2106|consen  319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN-  396 (626)
T ss_pred             ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc-
Confidence            221111 000        11111222222111100       01123566788999999985 7999999999999999 


Q ss_pred             CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCe
Q 004685          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK  325 (737)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~  325 (737)
                       ..+++-+.                      ....++.++.|+|.| .+++|+..|...+.|.++ +........+.+.+
T Consensus       397 -~~k~~wt~----------------------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-~~lv~~~~d~~~ls  451 (626)
T KOG2106|consen  397 -DHKLEWTK----------------------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTET-QDLVTIHTDNEQLS  451 (626)
T ss_pred             -CCceeEEE----------------------EecCceeEeeccCcc-eEEEeeccceEEEEeccc-ceeEEEEecCCceE
Confidence             33322111                      112258899999999 899999999999999999 44444444499999


Q ss_pred             eeeeccCCCCccCCCCCCCccccccccc
Q 004685          326 IMSFTPTLNGLELQPPIHDFLQTNIRVR  353 (737)
Q Consensus       326 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~  353 (737)
                      ++.|+|++..++..........+..+..
T Consensus       452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  452 VVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            9999999999888887766665544444

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=1e-21  Score=194.71  Aligned_cols=237  Identities=14%  Similarity=0.197  Sum_probs=191.0

Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (737)
Q Consensus        47 ~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~  126 (737)
                      ++|...|.+++.++||++||+|+.|..|.||+.++.+.++.+ .+|.+.|.+++|-..  .+.|++++.|++|++|++..
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecC--ccceeeeecCCceEEEehhH
Confidence            489999999999999999999999999999999999999999 899999999999987  58899999999999999986


Q ss_pred             CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (737)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (737)
                      .          ..+.++.+|.+.|.+|.... -...+.+|+.|+++++|++......                       
T Consensus       276 ~----------s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesql-----------------------  321 (479)
T KOG0299|consen  276 L----------SYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQL-----------------------  321 (479)
T ss_pred             h----------HHHHHHhCCccceeeechhc-ccceEEeccccceeEEEecccccee-----------------------
Confidence            3          34788999999999998776 4466666779999999999543311                       


Q ss_pred             eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004685          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (737)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  286 (737)
                         .+.++...+.|++|-.+  ..|++|+.+|.|.+|++-..+++......+.......        .. ....+|++++
T Consensus       322 ---ifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~--------~~-~~~~Witsla  387 (479)
T KOG0299|consen  322 ---IFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELD--------PV-NGNFWITSLA  387 (479)
T ss_pred             ---eeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeeccccccCCcc--------cc-ccccceeeeE
Confidence               12244678899999874  6999999999999999999988766543322111110        00 1113899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCCc---ceeeeecCCCCeeeeeccCCC
Q 004685          287 FSPNGEEVLLSYSGEHVYLMDVNHAGG---RAMRYTVGDASKIMSFTPTLN  334 (737)
Q Consensus       287 ~sp~g~~l~~g~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~p~~~  334 (737)
                      ..|...++++|+.+|.|++|-+..+-.   +...+.....++.++|++++.
T Consensus       388 ~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  388 VIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK  438 (479)
T ss_pred             ecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence            999999999999999999999999732   222334577888889988776

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.4e-20  Score=177.89  Aligned_cols=223  Identities=17%  Similarity=0.225  Sum_probs=155.3

Q ss_pred             eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc
Q 004685           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~  118 (737)
                      ..|+||.+.|++|+|+.||+.|||++.|+.|+||+++.-.     ++..-  -.-+-.+.++|+|+. ..+++++-...+
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dhpT~V~FapDc-~s~vv~~~~g~~  156 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDHPTRVVFAPDC-KSVVVSVKRGNK  156 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCCceEEEECCCc-ceEEEEEccCCE
Confidence            4588999999999999999999999999999999987532     22111  111246789999997 667777878889


Q ss_pred             EEEEecCCCCC-CCCCC-CCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004685          119 VRLFNLSRFSG-RGLDD-NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (737)
Q Consensus       119 I~iwd~~~~~~-~~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~  196 (737)
                      +++|-+..... ..... ..+.....-..|.-.+..+-... ++.+|++++.|..|.+|+++ ++..             
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L-------------  221 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLL-------------  221 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Ccee-------------
Confidence            99998764321 11100 00111122344666777777655 77899999999999999998 4422             


Q ss_pred             EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004685          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (737)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (737)
                                  ..........+.++.+|+ ++++++++.--.+++|.+--.+.-. ++      ...+.   ..+  .|
T Consensus       222 ------------~~idtnq~~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kdG~-fq------ev~rv---f~L--kG  276 (420)
T KOG2096|consen  222 ------------QSIDTNQSSNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKDGT-FQ------EVKRV---FSL--KG  276 (420)
T ss_pred             ------------eeeccccccccceeeCCC-CcEEEEecCCCCceEEEEEeccCcc-hh------hhhhh---hee--cc
Confidence                        111112234467889997 6999999999999999875333110 00      00000   111  45


Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      |.. .|..++|+|+.+.+++.+.||+.++||+.-
T Consensus       277 H~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  277 HQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             chh-heeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            665 699999999999999999999999999765

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=1.3e-21  Score=194.91  Aligned_cols=209  Identities=18%  Similarity=0.287  Sum_probs=163.9

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEc-ccCccceEEEEEeeCCCCCEEEEEECC
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIE-TGHSANVFCTKFVPETSDELVVSGAGD  116 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~d  116 (737)
                      +.+.+| .|.+-|.++.+|...+++.||+. |-|+|||+....   .+..+. ..-...|.++...|+  |..|++|+.-
T Consensus       411 rq~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd--grtLivGGea  486 (705)
T KOG0639|consen  411 RQINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVGGEA  486 (705)
T ss_pred             Hhhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC--CceEEecccc
Confidence            444455 48889999999999999999987 789999997431   222221 124567999999999  7999999999


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004685          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (737)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~  196 (737)
                      .++.|||+...+.+.        -..+..-...+..++.+| +.++.++|+.||.|.|||+.+..               
T Consensus       487 stlsiWDLAapTpri--------kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~---------------  542 (705)
T KOG0639|consen  487 STLSIWDLAAPTPRI--------KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQT---------------  542 (705)
T ss_pred             ceeeeeeccCCCcch--------hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccce---------------
Confidence            999999999765432        122222334567889999 66888899999999999999865               


Q ss_pred             EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004685          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (737)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (737)
                                .+..+.+|...+.||.++++ +..|.||+-|.+||.||+|.+..+....                     
T Consensus       543 ----------~VrqfqGhtDGascIdis~d-GtklWTGGlDntvRcWDlregrqlqqhd---------------------  590 (705)
T KOG0639|consen  543 ----------LVRQFQGHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQHD---------------------  590 (705)
T ss_pred             ----------eeecccCCCCCceeEEecCC-CceeecCCCccceeehhhhhhhhhhhhh---------------------
Confidence                      35667789999999999997 6899999999999999999887654421                     


Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                       ....|.++-.+|++.+|++|-.++.|.+-....
T Consensus       591 -F~SQIfSLg~cP~~dWlavGMens~vevlh~sk  623 (705)
T KOG0639|consen  591 -FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK  623 (705)
T ss_pred             -hhhhheecccCCCccceeeecccCcEEEEecCC
Confidence             122599999999999999999888887765544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.5e-21  Score=204.75  Aligned_cols=207  Identities=16%  Similarity=0.238  Sum_probs=160.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEEc--ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIE--TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~----~~~~~~--~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      ...++|+.+++-..|+.++.. .++||-+....    +...+.  +.....+..|+|.... .++|++++..|.|.+||+
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~-~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLY-SNLIATCSTNGVISVWDL  117 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccch-hhhheeecCCCcEEEEec
Confidence            345677788888888887764 77888775422    222220  1112346778898654 789999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (737)
                      ......       +.+..+..|...++++.|++..+++|++|+.||+|++||++..+..                     
T Consensus       118 nk~~rn-------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~---------------------  169 (839)
T KOG0269|consen  118 NKSIRN-------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK---------------------  169 (839)
T ss_pred             Cccccc-------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc---------------------
Confidence            863211       2366788999999999999999999999999999999999987632                     


Q ss_pred             eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (737)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (737)
                          ..+.+....|..++|+|..++.|+++.+.|.+++||+|...            .|...+       ..|.+ +|.+
T Consensus       170 ----~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~------------r~~~k~-------~AH~G-pV~c  225 (839)
T KOG0269|consen  170 ----STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD------------RCEKKL-------TAHNG-PVLC  225 (839)
T ss_pred             ----ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch------------hHHHHh-------hcccC-ceEE
Confidence                22233567899999999888999999999999999999643            222222       33444 7999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          285 VTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       285 v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +.|+|++.+|++|+.|++|+|||+.+.
T Consensus       226 ~nwhPnr~~lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  226 LNWHPNREWLATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             EeecCCCceeeecCCCccEEEEeccCC
Confidence            999999999999999999999999874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=5.4e-21  Score=179.81  Aligned_cols=163  Identities=17%  Similarity=0.255  Sum_probs=127.3

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      ....+.|.+++|||.. ..+++.++.|++|++|++... +..      . -.....|.++|.+++|+. ++..+++|+.|
T Consensus        24 ~pP~DsIS~l~FSP~~-~~~~~A~SWD~tVR~wevq~~-g~~------~-~ka~~~~~~PvL~v~Wsd-dgskVf~g~~D   93 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQA-DNLLAAGSWDGTVRIWEVQNS-GQL------V-PKAQQSHDGPVLDVCWSD-DGSKVFSGGCD   93 (347)
T ss_pred             CCcccchheeEecccc-CceEEecccCCceEEEEEecC-Ccc------c-chhhhccCCCeEEEEEcc-CCceEEeeccC
Confidence            4567889999999953 678889999999999999863 221      1 255667999999999998 55888899999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRML  248 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~  248 (737)
                      +.+++||+.+++..                          ....|..+|..+.|-+.. ..+|+||+.|++|+.||.|..
T Consensus        94 k~~k~wDL~S~Q~~--------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~  147 (347)
T KOG0647|consen   94 KQAKLWDLASGQVS--------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS  147 (347)
T ss_pred             CceEEEEccCCCee--------------------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence            99999999998632                          223477889999998752 238999999999999999988


Q ss_pred             CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      .++.++..+.                      .+.++  +-...+++++..+..|.+|+++.+.
T Consensus       148 ~pv~t~~LPe----------------------RvYa~--Dv~~pm~vVata~r~i~vynL~n~~  187 (347)
T KOG0647|consen  148 NPVATLQLPE----------------------RVYAA--DVLYPMAVVATAERHIAVYNLENPP  187 (347)
T ss_pred             Ceeeeeeccc----------------------eeeeh--hccCceeEEEecCCcEEEEEcCCCc
Confidence            8776653211                      23333  3355689999999999999998764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=1.5e-20  Score=186.10  Aligned_cols=217  Identities=18%  Similarity=0.268  Sum_probs=165.5

Q ss_pred             ccceeecccCCceEEEEEcCCC--CEEEEEeCCCcEEEEECCCC----eEEEEEcccCccceEEEEEeeCCCCCEEEEEE
Q 004685           41 SQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g--~~lasgs~dg~V~vwd~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs  114 (737)
                      .....++-|.++|++++|+|..  +++|+|+.-|+|-+||+.+.    .-+..+ ..|..+|.++.|+|.. ...+++.+
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n-~s~i~ssS  254 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPAN-TSQIYSSS  254 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCC-hhheeeec
Confidence            3445566788999999999954  58999999999999999522    124445 7899999999999986 78999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                      .||+|++-|+.....        +.+..+......+.++.|+..++..+ .+..=|...+||+++....           
T Consensus       255 yDGtiR~~D~~~~i~--------e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~-----------  314 (498)
T KOG4328|consen  255 YDGTIRLQDFEGNIS--------EEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSE-----------  314 (498)
T ss_pred             cCceeeeeeecchhh--------HHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCcc-----------
Confidence            999999999986432        22334444556677888888665555 4555569999999987632           


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (737)
                                   +.....|...|.+++++|..+.+|||++.|++.+|||+|.......               | .+..
T Consensus       315 -------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s---------------p-~lst  365 (498)
T KOG4328|consen  315 -------------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS---------------P-FLST  365 (498)
T ss_pred             -------------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC---------------c-ceec
Confidence                         2222345668999999999999999999999999999997654332               0 1111


Q ss_pred             CCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       275 ~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      ..|.. .|.++.|||++-.|++.+.|+.|+|||..
T Consensus       366 ~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  366 LPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             ccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            22333 59999999998889999999999999975

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.5e-21  Score=192.41  Aligned_cols=253  Identities=20%  Similarity=0.298  Sum_probs=193.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      .++|.|++-+|+|.+|+.|+..|.|.+|.+.+|..+..+ .+|-..|+|+.|+.|  +.+|++|+.||.|.+|++...-.
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d--gs~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD--GSHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCC--CcEEEecCCCccEEEEEEEeecc
Confidence            478999999999999999999999999999999999888 899999999999999  79999999999999999864211


Q ss_pred             CCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                      . ......+|+..+..|+-+|+++...+.+ ...++|+|.|.++++||+..+..+              ..        +
T Consensus       158 a-~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--------------lt--------i  214 (476)
T KOG0646|consen  158 A-DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--------------LT--------I  214 (476)
T ss_pred             c-ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee--------------EE--------E
Confidence            1 1111357789999999999999998742 248889999999999999988643              10        1


Q ss_pred             cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc-ccCCCCCCCCccccccccccCCCCcc-cceeEEE
Q 004685          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS-CQKRMSPPPCVNYFCPMHLSEHGRSS-LHLTHVT  286 (737)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~  286 (737)
                          .....+.+++.+|. +..+++|+.+|.|.+.++........ +....  .....+. ...+  .||.+ ..|+|++
T Consensus       215 ----~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~--~~~~~t~-~~~~--~Gh~~~~~ITcLa  284 (476)
T KOG0646|consen  215 ----TFPSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKG--RHEENTQ-INVL--VGHENESAITCLA  284 (476)
T ss_pred             ----ecCCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccc--cccccce-eeee--ccccCCcceeEEE
Confidence                11357899999997 58999999999999999876542111 00000  0000000 0111  23433 4699999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004685          287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (737)
Q Consensus       287 ~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  338 (737)
                      ++-||..|++|+.||+|.|||+.+.+..........+++.+.+.|-.+..-.
T Consensus       285 is~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l  336 (476)
T KOG0646|consen  285 ISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIIL  336 (476)
T ss_pred             EecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceec
Confidence            9999999999999999999999997766666657788888888776444333

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=5.4e-20  Score=191.02  Aligned_cols=187  Identities=12%  Similarity=0.173  Sum_probs=130.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (737)
Q Consensus        62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (737)
                      +.++++++.|+.|++||+.+++.+..+ ..+ ..+.+++|+|+  +..+ ++++.++.|++||......          .
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~-~~~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~~~----------~   66 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVG-QRPRGITLSKD--GKLLYVCASDSDTIQVIDLATGEV----------I   66 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEE-ECC-CCCCceEECCC--CCEEEEEECCCCeEEEEECCCCcE----------E
Confidence            357889999999999999999888887 444 34678999999  5655 6777899999999885321          2


Q ss_pred             eeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEE
Q 004685          141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  220 (737)
Q Consensus       141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (737)
                      ..+..+.. +..++|+|++..++++++.|+.|++||+++.+.+              ..        +   . ....+.+
T Consensus        67 ~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~--------------~~--------~---~-~~~~~~~  119 (300)
T TIGR03866        67 GTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVL--------------AE--------I---P-VGVEPEG  119 (300)
T ss_pred             EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE--------------eE--------e---e-CCCCcce
Confidence            33333333 5678999955445555667899999999875421              00        0   0 0123567


Q ss_pred             EEEecCCCcEEEEEeCCC-cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-
Q 004685          221 CDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-  298 (737)
Q Consensus       221 i~~sp~~~~~l~t~s~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-  298 (737)
                      ++|+|+ +.+++++..++ .+.+||.++++......                   . .  ..+..++|+|+|++|++++ 
T Consensus       120 ~~~~~d-g~~l~~~~~~~~~~~~~d~~~~~~~~~~~-------------------~-~--~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       120 MAVSPD-GKIVVNTSETTNMAHFIDTKTYEIVDNVL-------------------V-D--QRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EEECCC-CCEEEEEecCCCeEEEEeCCCCeEEEEEE-------------------c-C--CCccEEEECCCCCEEEEEcC
Confidence            999997 57888887765 56778987654332211                   0 0  1256789999999886665 


Q ss_pred             CCCeEEEEEcCCCC
Q 004685          299 SGEHVYLMDVNHAG  312 (737)
Q Consensus       299 ~dg~v~iwd~~~~~  312 (737)
                      .++.|++||+.+++
T Consensus       177 ~~~~v~i~d~~~~~  190 (300)
T TIGR03866       177 IGGTVSVIDVATRK  190 (300)
T ss_pred             CCCEEEEEEcCcce
Confidence            58999999998753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=9.6e-21  Score=194.55  Aligned_cols=267  Identities=18%  Similarity=0.272  Sum_probs=184.1

Q ss_pred             CChhhhhhhccccCCCCCcccccccccccccccc----cceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004685            8 DGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLS----QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK   83 (737)
Q Consensus         8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~   83 (737)
                      ...|..-+...++..-...++.+.+++..-..++    .++.+..|..+|..+.|-|....|++++.|.++++||+.+.+
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            3567777888888888888999999986555554    235567899999999999966789999999999999999988


Q ss_pred             EEEE--EcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCC-----------C--CCCC----Cceeec
Q 004685           84 LLHS--IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD-----------D--NAIT----PSALYQ  144 (737)
Q Consensus        84 ~~~~--~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-----------~--~~~~----~~~~~~  144 (737)
                      ++..  + .+|...|.+++|.|.. ...|++|+.||.|.|||++.......+           .  ...+    -....+
T Consensus       134 l~G~~~~-~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k  211 (720)
T KOG0321|consen  134 LVGGRLN-LGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK  211 (720)
T ss_pred             eecceee-cccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence            8766  5 7999999999999986 789999999999999999864311110           0  0001    112223


Q ss_pred             cCCCc----eeEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceE
Q 004685          145 CHTRR----VKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  219 (737)
Q Consensus       145 ~h~~~----v~~l~~~p~~~~~l~s~s~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (737)
                      .+...    |+.+.| . +...|++++. |+.|++||+++...........              ...+.........+.
T Consensus       212 A~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~--------------~~~~~t~skrs~G~~  275 (720)
T KOG0321|consen  212 AASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRG--------------SDKYPTHSKRSVGQV  275 (720)
T ss_pred             cccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCc--------------ccCccCcccceeeeE
Confidence            34444    444555 4 5578888887 9999999999876442111110              001111112245667


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc-eeEEEEcCCCCEEEEEe
Q 004685          220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH-LTHVTFSPNGEEVLLSY  298 (737)
Q Consensus       220 ~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~v~~sp~g~~l~~g~  298 (737)
                      ++.....+ .+|++.+.|+.|++|+++....-...           .|       .++.... -..-..+|++.+|++|+
T Consensus       276 nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP~~-----------~~-------sg~~~~sf~vks~lSpd~~~l~SgS  336 (720)
T KOG0321|consen  276 NLILDSSG-TYLFASCTDNSIYFYNMRSLSISPVA-----------EF-------SGKLNSSFYVKSELSPDDCSLLSGS  336 (720)
T ss_pred             EEEecCCC-CeEEEEecCCcEEEEeccccCcCchh-----------hc-------cCcccceeeeeeecCCCCceEeccC
Confidence            77777764 55555556999999999875421111           00       0111101 12234689999999999


Q ss_pred             CCCeEEEEEcCCC
Q 004685          299 SGEHVYLMDVNHA  311 (737)
Q Consensus       299 ~dg~v~iwd~~~~  311 (737)
                      .|..+++|.+.+.
T Consensus       337 sd~~ayiw~vs~~  349 (720)
T KOG0321|consen  337 SDEQAYIWVVSSP  349 (720)
T ss_pred             CCcceeeeeecCc
Confidence            9999999998884

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=9.8e-22  Score=206.06  Aligned_cols=223  Identities=16%  Similarity=0.273  Sum_probs=180.3

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685           52 CVNAISWNS-KGSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        52 ~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                      .+..++|+. +.++|||++..|.|.+||+..   .+.+..| ..|+..++++.|++.. .++|++|+.||+|++||++..
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF-NEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh-hhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecc
Confidence            455677875 568999999999999999987   4555667 7899999999999987 889999999999999999975


Q ss_pred             CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                      ..          ..++.+....|+.+.|+|..+..|+++...|.+.+||+|.....                        
T Consensus       167 ~S----------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------------  212 (839)
T KOG0269|consen  167 KS----------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------------  212 (839)
T ss_pred             cc----------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------------
Confidence            43          45666788999999999988899999999999999999987632                        


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                      ...+..|.++|.|+.|+|+ ..+||||+.|+.|+|||+.+.......        ++            +...++.+|.|
T Consensus       213 ~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~~--------tI------------nTiapv~rVkW  271 (839)
T KOG0269|consen  213 EKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPKH--------TI------------NTIAPVGRVKW  271 (839)
T ss_pred             HHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCcccee--------EE------------eecceeeeeee
Confidence            3445578999999999995 689999999999999999865432221        01            23346999999


Q ss_pred             cCCCCE-EEEEeC--CCeEEEEEcCCCCcceeee-ecCCCCeeeeecc
Q 004685          288 SPNGEE-VLLSYS--GEHVYLMDVNHAGGRAMRY-TVGDASKIMSFTP  331 (737)
Q Consensus       288 sp~g~~-l~~g~~--dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~p  331 (737)
                      -|+..+ |++++.  |-.|+|||++.+-.+...+ .+...++.++|..
T Consensus       272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence            998766 445444  7899999999977666544 4677777777765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=2.4e-21  Score=199.31  Aligned_cols=259  Identities=18%  Similarity=0.189  Sum_probs=207.3

Q ss_pred             CCCcccccccccccccccc----cceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEEcccCccce
Q 004685           23 RPDVNHSLQMHSSLVRRLS----QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANV   96 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~--~~~~~~~~~h~~~V   96 (737)
                      +++-++.|++|+.-....+    ...+++.|.+-|+.|....+++.|++++.|-+|++|+...+  -+..++ ..|.+.|
T Consensus        42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYV  120 (735)
T KOG0308|consen   42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYV  120 (735)
T ss_pred             ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh-hcccchh
Confidence            3566888999985444443    36678899999999999999999999999999999999877  466677 7899999


Q ss_pred             EEEEE-eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004685           97 FCTKF-VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQ  174 (737)
Q Consensus        97 ~~v~~-sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~v  174 (737)
                      .|+++ .++  ..++|+|+.|+.|.+||++.+..+............+. ++..+|++++..+ .+..|++|+..+.+++
T Consensus       121 kcla~~ak~--~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~  197 (735)
T KOG0308|consen  121 KCLAYIAKN--NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRL  197 (735)
T ss_pred             eeeeecccC--ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEE
Confidence            99999 666  58999999999999999997543222122222233444 8899999999998 6689999999999999


Q ss_pred             EEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004685          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (737)
Q Consensus       175 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~  254 (737)
                      ||.++.+.+                         -...+|+.-|.++-.+++ +..+++++.||+|++||++..+.+.++
T Consensus       198 wDprt~~ki-------------------------mkLrGHTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  198 WDPRTCKKI-------------------------MKLRGHTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQRCLATY  251 (735)
T ss_pred             eccccccce-------------------------eeeeccccceEEEEEcCC-CCeEeecCCCceEEeeeccccceeeeE
Confidence            999998743                         223478889999999997 689999999999999999976544443


Q ss_pred             cCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685          255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (737)
                                          ..|.. .|+++..+|+-.++++|+.||.|+.=|+.+.......+...+++..+..+..
T Consensus       252 --------------------~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~  308 (735)
T KOG0308|consen  252 --------------------IVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEH  308 (735)
T ss_pred             --------------------EeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccc
Confidence                                22444 3999999999999999999999999999997666666666777666665533

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.87  E-value=1.5e-20  Score=205.35  Aligned_cols=238  Identities=20%  Similarity=0.314  Sum_probs=181.6

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEEcccCccceEEEEEe
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFV  102 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~------------------~~~~~~~~~~h~~~V~~v~~s  102 (737)
                      +.+.++..|.+.|+|+.|+|||++||+|+.|+.|.||....                  .+++..+ .+|+..|..++|+
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWS  138 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccC
Confidence            45567788999999999999999999999999999999872                  1245556 7899999999999


Q ss_pred             eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                      |+  +.+|++++.|++|.||+.++.          +.+..+.+|.+.|-.+.|+| -+++|++-+.|++|++|.+.....
T Consensus       139 p~--~~~lvS~s~DnsViiwn~~tF----------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i  205 (942)
T KOG0973|consen  139 PD--DSLLVSVSLDNSVIIWNAKTF----------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGI  205 (942)
T ss_pred             CC--ccEEEEecccceEEEEccccc----------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEccccee
Confidence            98  799999999999999999974          34788999999999999999 669999999999999999665332


Q ss_pred             CCCCC---------------CCCCccceE------------EEeccCCceeeccCCCCCccceEEEEEecC---------
Q 004685          183 CPPAG---------------SSHQECRNI------------LLDLRCGAKRSLADPPKQTLSLKSCDISST---------  226 (737)
Q Consensus       183 ~~~~~---------------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~---------  226 (737)
                      ...+-               ...+++..+            +.-+..+.-..-..+-+|..++.++.|+|.         
T Consensus       206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng  285 (942)
T KOG0973|consen  206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG  285 (942)
T ss_pred             eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence            11000               000111000            001111222222345678889999999873         


Q ss_pred             ---CCc----EEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC
Q 004685          227 ---RPH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (737)
Q Consensus       227 ---~~~----~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~  299 (737)
                         .++    .+|+|+.|+.|-||.....+|+-.+.                    .-....|.+++|+|||..|++++.
T Consensus       286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~--------------------~lf~~SI~DmsWspdG~~LfacS~  345 (942)
T KOG0973|consen  286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH--------------------NLFNKSIVDMSWSPDGFSLFACSL  345 (942)
T ss_pred             CccCCCcceEEEEEecCCccEEEEecCCCCchhhhh--------------------hhhcCceeeeeEcCCCCeEEEEec
Confidence               121    78999999999999987766554331                    111225999999999999999999


Q ss_pred             CCeEEEEEcCCCC
Q 004685          300 GEHVYLMDVNHAG  312 (737)
Q Consensus       300 dg~v~iwd~~~~~  312 (737)
                      ||+|.++.+...+
T Consensus       346 DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  346 DGTVALIHFEEKE  358 (942)
T ss_pred             CCeEEEEEcchHH
Confidence            9999999998743

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.5e-19  Score=187.34  Aligned_cols=246  Identities=12%  Similarity=0.108  Sum_probs=187.9

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                      -..+|.+|+|+.+.+.||.+-.||.|-||++...=. ...+..+....|.+++|++.   ..|.+.+.+|.|.-||+.+.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEecccC
Confidence            347899999999999999999999999999987643 33442234578999999964   78999999999999999973


Q ss_pred             CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                                ++...+....+.|++++.+| ....++.|+.||.+..++...++..                       .
T Consensus       101 ----------k~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~-----------------------~  146 (691)
T KOG2048|consen  101 ----------KQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKIT-----------------------Y  146 (691)
T ss_pred             ----------ceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEE-----------------------E
Confidence                      33667777889999999999 4578889999997777777665421                       1


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC-cccceeEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR-SSLHLTHVT  286 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~  286 (737)
                      -..+..++..+.+++|+|+ +..+++|+.||.|++||...++.+....              +.+..... ...-|+++.
T Consensus       147 ~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~--------------~~~d~l~k~~~~iVWSv~  211 (691)
T KOG2048|consen  147 KRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIIT--------------MQLDRLSKREPTIVWSVL  211 (691)
T ss_pred             EeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEee--------------ecccccccCCceEEEEEE
Confidence            1223345688999999997 5789999999999999999887554211              01111111 222478888


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCccc
Q 004685          287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQ  347 (737)
Q Consensus       287 ~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  347 (737)
                      |-.++ .|++|..-|+|.+||...+........+...+..++.++....+....-+...+.
T Consensus       212 ~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~  271 (691)
T KOG2048|consen  212 FLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQ  271 (691)
T ss_pred             EeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence            88665 4899999999999999999988888888888888888888776666555554444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=7.6e-20  Score=181.35  Aligned_cols=203  Identities=16%  Similarity=0.198  Sum_probs=158.6

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEEcccCccceEEEEEeeCCCCC-EEEEEECCCcEEEEecC
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~~  125 (737)
                      -.++|++|.|+|...+|++|+.|+.++||.++..  ..++.+ .-...+|.+.+|.|+  |. .+++++....++.||+.
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecCC--CceEEEecccceEEEEeecc
Confidence            3578999999999999999999999999998743  345555 456789999999999  56 89999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeeccCC-CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685          126 RFSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (737)
                      +..-        .++..+.++. ..+....++| ++++|+..+..|.|.+....+++.+.                    
T Consensus       289 ~ak~--------~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~--------------------  339 (514)
T KOG2055|consen  289 TAKV--------TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELIT--------------------  339 (514)
T ss_pred             cccc--------ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhh--------------------
Confidence            6432        2233334443 4567788899 55899999999999999988887441                    


Q ss_pred             eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (737)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (737)
                            .-...+.|..++|+.+ +..|++++.+|.|.+||++....+..+...                  |  .-.=++
T Consensus       340 ------s~KieG~v~~~~fsSd-sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~------------------G--~v~gts  392 (514)
T KOG2055|consen  340 ------SFKIEGVVSDFTFSSD-SKELLASGGTGEVYVWNLRQNSCLHRFVDD------------------G--SVHGTS  392 (514)
T ss_pred             ------eeeeccEEeeEEEecC-CcEEEEEcCCceEEEEecCCcceEEEEeec------------------C--ccceee
Confidence                  0122467889999986 588888889999999999987655444221                  0  112467


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          285 VTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       285 v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      ++.+++|.||++|+..|.|.|||.++
T Consensus       393 ~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  393 LCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             eeecCCCceEEeccCcceEEEeccch
Confidence            88899999999999999999999877

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.5e-19  Score=160.50  Aligned_cols=211  Identities=22%  Similarity=0.302  Sum_probs=159.5

Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-----EEEEcccCccceEEEEEeeCC--CCCEEEEEEC-CCc
Q 004685           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPET--SDELVVSGAG-DAE  118 (737)
Q Consensus        47 ~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~-----~~~~~~~h~~~V~~v~~sp~~--~~~~l~sgs~-dg~  118 (737)
                      +-|++.|.|.+|+|+|++||+|+.|++|++.-++...+     -..| .-|.+.|..++|..+.  .+.+|++++. |..
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            45889999999999999999999999999976654322     1234 5699999999998643  2456776654 555


Q ss_pred             EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (737)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~  198 (737)
                      |++-|...++          +++.+.+|++.|.++---  ++-++++|+.|.+|++||++....+.           .+-
T Consensus       165 iy~tdc~~g~----------~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~-----------~l~  221 (350)
T KOG0641|consen  165 IYITDCGRGQ----------GFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVN-----------TLD  221 (350)
T ss_pred             EEEeecCCCC----------cceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceee-----------ecc
Confidence            5555555432          378899999998776321  55899999999999999999875431           110


Q ss_pred             eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                      ..       ..........|.+++..|. +++|++|-.|..+.+||++.+..++.+                    +.|.
T Consensus       222 ~~-------~~~~glessavaav~vdps-grll~sg~~dssc~lydirg~r~iq~f--------------------~phs  273 (350)
T KOG0641|consen  222 ND-------FHDGGLESSAVAAVAVDPS-GRLLASGHADSSCMLYDIRGGRMIQRF--------------------HPHS  273 (350)
T ss_pred             Cc-------ccCCCcccceeEEEEECCC-cceeeeccCCCceEEEEeeCCceeeee--------------------CCCc
Confidence            00       0011112357899999997 699999999999999999998877665                    3344


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      . .|.++.|+|...|+++++.|.+|++-|++-
T Consensus       274 a-dir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  274 A-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             c-ceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            4 599999999999999999999999998775

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.2e-19  Score=192.21  Aligned_cols=209  Identities=13%  Similarity=0.153  Sum_probs=165.2

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~  126 (737)
                      +|+..-+.|+|.|+|++|++++.||.|++|+.... +....+ ..+...|.+++...    .+|++|+.+++|.+|.+..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~s----~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACYS----NHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeecc----cceEEeeccceEEEeeCCC
Confidence            68889999999999999999999999999998765 444444 23778888887654    5899999999999999987


Q ss_pred             CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (737)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (737)
                      +...          ..+...+-++++++|+. ++.+++.||.|-.|++.++.....                        
T Consensus        86 ~~~~----------~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~------------------------  130 (933)
T KOG1274|consen   86 GEED----------TILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ------------------------  130 (933)
T ss_pred             CCcc----------ceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccch------------------------
Confidence            5432          23444567899999998 778999999999999999887652                        


Q ss_pred             eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004685          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (737)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  286 (737)
                       .....+|..+|.++.|+|. +++||+.+-||.|+|||+.++.....+..-.....            . .....+..++
T Consensus       131 -~~~lrgh~apVl~l~~~p~-~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~------------~-~~s~i~~~~a  195 (933)
T KOG1274|consen  131 -EKVLRGHDAPVLQLSYDPK-GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE------------F-ILSRICTRLA  195 (933)
T ss_pred             -heeecccCCceeeeeEcCC-CCEEEEEecCceEEEEEcccchhhhhcccCCcccc------------c-cccceeeeee
Confidence             2334578899999999997 58999999999999999998775555432111100            0 1022478899


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          287 FSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       287 ~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      |+|+|..+++...|+.|.+|+....
T Consensus       196 W~Pk~g~la~~~~d~~Vkvy~r~~w  220 (933)
T KOG1274|consen  196 WHPKGGTLAVPPVDNTVKVYSRKGW  220 (933)
T ss_pred             ecCCCCeEEeeccCCeEEEEccCCc
Confidence            9999999999999999999997764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.7e-20  Score=177.01  Aligned_cols=247  Identities=21%  Similarity=0.309  Sum_probs=202.2

Q ss_pred             CCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC------CC-------------
Q 004685           21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY------SS-------------   81 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~------~~-------------   81 (737)
                      -.+.+.+++..+|.  +.+.+++.++.||.+.|++|+|++.+.++++++.|++-.||..      ..             
T Consensus       163 ~gtASADhTA~iWs--~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~  240 (481)
T KOG0300|consen  163 CGTASADHTARIWS--LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE  240 (481)
T ss_pred             eeecccccceeEEe--eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence            34578899999999  8889999999999999999999999999999999999999972      10             


Q ss_pred             ---------------------CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685           82 ---------------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (737)
Q Consensus        82 ---------------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (737)
                                           ...+..+ .+|...|.++.|...  ++.+++++.|.+..+||+.++          +++
T Consensus       241 e~sDe~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtg----------e~v  307 (481)
T KOG0300|consen  241 EHSDEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLAG--GQQMVTASWDRTANLWDVETG----------EVV  307 (481)
T ss_pred             hcccccccccccccccCCceeeeeeeee-eccccceEehhhhcC--cceeeeeeccccceeeeeccC----------cee
Confidence                                 0123344 689999999999988  799999999999999999974          347


Q ss_pred             eeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEE
Q 004685          141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  220 (737)
Q Consensus       141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (737)
                      ..+.+|....+.++-+| ..+++++.+.|.+.++||++..-                        ..+.-+.+|...|++
T Consensus       308 ~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI------------------------~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  308 NILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI------------------------QSVAVFQGHTDTVTS  362 (481)
T ss_pred             ccccCcchhccccccCC-cceEEEEeccCceeEeccchhhc------------------------ceeeeecccccceeE
Confidence            88999999999999999 66899999999999999999542                        235566788999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC
Q 004685          221 CDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (737)
Q Consensus       221 i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~  299 (737)
                      ..|..+  ..+++|++|.+|++||++++. ++.++.                      ...+++.++.+..+..|+.--.
T Consensus       363 ~vF~~d--d~vVSgSDDrTvKvWdLrNMRsplATIR----------------------tdS~~NRvavs~g~~iIAiPhD  418 (481)
T KOG0300|consen  363 VVFNTD--DRVVSGSDDRTVKVWDLRNMRSPLATIR----------------------TDSPANRVAVSKGHPIIAIPHD  418 (481)
T ss_pred             EEEecC--CceeecCCCceEEEeeeccccCcceeee----------------------cCCccceeEeecCCceEEeccC
Confidence            999985  589999999999999999765 333321                      1225889999999899999999


Q ss_pred             CCeEEEEEcCCCCccee-----eeecCCCCeeeeeccC
Q 004685          300 GEHVYLMDVNHAGGRAM-----RYTVGDASKIMSFTPT  332 (737)
Q Consensus       300 dg~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~~p~  332 (737)
                      +..|++||+.-.. +..     ..++...+.+.+|...
T Consensus       419 NRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~ee  455 (481)
T KOG0300|consen  419 NRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEE  455 (481)
T ss_pred             CceEEEEecCCCc-cccCCcccccccceeeeeeecccc
Confidence            9999999998643 222     2345666677777653

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=1e-19  Score=172.65  Aligned_cols=208  Identities=18%  Similarity=0.269  Sum_probs=147.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------eEEEEEcccCccceEEEEEe-------eCCCCCEEEEE
Q 004685           53 VNAISWNSKGSLLISGSDDTHINVWSYSSR------------KLLHSIETGHSANVFCTKFV-------PETSDELVVSG  113 (737)
Q Consensus        53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~------------~~~~~~~~~h~~~V~~v~~s-------p~~~~~~l~sg  113 (737)
                      ...+.|+|||.-|++-+.|..+++|++...            +....+.-.....|...+|-       |+  ..++++.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~--t~l~a~s  129 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS--TNLFAVS  129 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc--cceeeec
Confidence            456789999999999999999999998521            01111111234567777777       44  4789999


Q ss_pred             ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc---eeEEEEecCCCcEEEEEeCCCcEEEEEc-CCCCCCCCCCCC
Q 004685          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR---VKKLAVEVGNPHVVWSASEDGTLRQHDF-RQGSSCPPAGSS  189 (737)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~l~~~p~~~~~l~s~s~Dg~I~vwdl-~~~~~~~~~~~~  189 (737)
                      +.+.-|++||.-++..++        ......|.+.   ..++.|+|+ +..|+ ++..+.|++||+ |.+......   
T Consensus       130 sr~~PIh~wdaftG~lra--------Sy~~ydh~de~taAhsL~Fs~D-Geqlf-aGykrcirvFdt~RpGr~c~vy---  196 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRA--------SYRAYDHQDEYTAAHSLQFSPD-GEQLF-AGYKRCIRVFDTSRPGRDCPVY---  196 (406)
T ss_pred             cccCceeeeecccccccc--------chhhhhhHHhhhhheeEEecCC-CCeEe-ecccceEEEeeccCCCCCCcch---
Confidence            999999999998766543        2223334443   368999995 46664 456789999999 555422100   


Q ss_pred             CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccc
Q 004685          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (737)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (737)
                              ..       ......+..+-+.+++|+|.+..++++|+....+-||.-....++..+               
T Consensus       197 --------~t-------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll---------------  246 (406)
T KOG2919|consen  197 --------TT-------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL---------------  246 (406)
T ss_pred             --------hh-------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee---------------
Confidence                    00       001112345678899999998889999999999988887766654433               


Q ss_pred             ccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCC
Q 004685          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA  311 (737)
Q Consensus       270 ~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~  311 (737)
                           .+|.+ .|+.+.|+++|+.|++|+. |..|.+||++..
T Consensus       247 -----ggh~g-GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  247 -----GGHGG-GVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             -----cccCC-CeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence                 34554 5999999999999999998 789999999873

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.1e-21  Score=204.05  Aligned_cols=219  Identities=22%  Similarity=0.383  Sum_probs=190.6

Q ss_pred             ccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEE
Q 004685           19 HTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC   98 (737)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~   98 (737)
                      .....++.+.++.+|.  ..+...+..|.+|..+|.|+.|+++..+|++|+.+|+|++||++..+.++++ .+|...+.+
T Consensus        41 r~~~~Gg~~~k~~L~~--i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~s  117 (825)
T KOG0267|consen   41 RSLVTGGEDEKVNLWA--IGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITS  117 (825)
T ss_pred             eeeccCCCceeecccc--ccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh-hccccCcce
Confidence            4566788899999998  7777778889999999999999999999999999999999999999999999 899999999


Q ss_pred             EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004685           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (737)
Q Consensus        99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~  178 (737)
                      +.|+|.  +.++++|+.|+-+++||++..          .+...+.+|...|.+++|+| ++.++++++.|..+++||+.
T Consensus       118 v~f~P~--~~~~a~gStdtd~~iwD~Rk~----------Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~  184 (825)
T KOG0267|consen  118 VDFHPY--GEFFASGSTDTDLKIWDIRKK----------GCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLT  184 (825)
T ss_pred             eeeccc--eEEeccccccccceehhhhcc----------CceeeecCCcceeEEEeecC-CCceeeccCCcceeeeeccc
Confidence            999999  799999999999999999952          34788889999999999999 67999999999999999999


Q ss_pred             CCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCC
Q 004685          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM  258 (737)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~  258 (737)
                      .++.                         +..++.|+..+..+.|+|. .-+++.|+.|+++++||+++...+....   
T Consensus       185 agk~-------------------------~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~~---  235 (825)
T KOG0267|consen  185 AGKL-------------------------SKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSGK---  235 (825)
T ss_pred             cccc-------------------------ccccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeeccC---
Confidence            8873                         4556678889999999997 4799999999999999999765443321   


Q ss_pred             CCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC
Q 004685          259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG  300 (737)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d  300 (737)
                                        .....|.+.+|+|++..+++|...
T Consensus       236 ------------------~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  236 ------------------PETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ------------------CccCCceeeeecCCceeeecCchh
Confidence                              112259999999999988888765

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.3e-19  Score=171.53  Aligned_cols=265  Identities=11%  Similarity=0.096  Sum_probs=194.3

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      ..+++++++|+.....  ....| .|..++.+++|.+ ...+++|+.||.|+++|+.++.... + ..|..+|.||.+++
T Consensus        31 ssWDgslrlYdv~~~~--l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~-i-gth~~~i~ci~~~~  104 (323)
T KOG1036|consen   31 SSWDGSLRLYDVPANS--LKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ-I-GTHDEGIRCIEYSY  104 (323)
T ss_pred             EeccCcEEEEeccchh--hhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-e-ccCCCceEEEEeec
Confidence            3489999999966553  33333 3889999999987 4569999999999999999987654 3 57999999999998


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      .  ...+++|+.|++|++||.+....          ...+. ....|.++..   .++.|+.|+.|..+.+||+++....
T Consensus       105 ~--~~~vIsgsWD~~ik~wD~R~~~~----------~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~  168 (323)
T KOG1036|consen  105 E--VGCVISGSWDKTIKFWDPRNKVV----------VGTFD-QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEP  168 (323)
T ss_pred             c--CCeEEEcccCccEEEEecccccc----------ccccc-cCceEEEEec---cCCEEEEeecCceEEEEEcccccch
Confidence            8  58999999999999999995221          22222 3347888877   4578889999999999999987643


Q ss_pred             CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (737)
                      .                       ......-+..+.++++.|. +.-+++++-||+|.+=.+........-..   .-.|
T Consensus       169 ~-----------------------q~reS~lkyqtR~v~~~pn-~eGy~~sSieGRVavE~~d~s~~~~skky---aFkC  221 (323)
T KOG1036|consen  169 F-----------------------QRRESSLKYQTRCVALVPN-GEGYVVSSIEGRVAVEYFDDSEEAQSKKY---AFKC  221 (323)
T ss_pred             h-----------------------hhccccceeEEEEEEEecC-CCceEEEeecceEEEEccCCchHHhhhce---eEEe
Confidence            1                       0111123457899999995 56889999999998877665421111000   0011


Q ss_pred             ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCC
Q 004685          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI  342 (737)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  342 (737)
                      .+.     ........++|++++|||-...|++|+.||.|.+||+.+.+....+......+..++|+.++..++.....
T Consensus       222 Hr~-----~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  222 HRL-----SEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY  295 (323)
T ss_pred             eec-----ccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence            110     00112234579999999999999999999999999999977666666666778889999988877776543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=4.4e-20  Score=178.55  Aligned_cols=220  Identities=21%  Similarity=0.294  Sum_probs=168.4

Q ss_pred             cceeecccCCceEEEEEcCCC--CEEEEEeCCCcEEEEECCC----------------CeEEEEEcccCccceEEEEEee
Q 004685           42 QERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSS----------------RKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        42 ~~~~l~~H~~~V~~l~~s~~g--~~lasgs~dg~V~vwd~~~----------------~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      .....-+|.+.|+.+..++-+  .+.|+-+..|.|.|||+..                .+.+.++ .+|...=..++|||
T Consensus       143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp  221 (440)
T KOG0302|consen  143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSP  221 (440)
T ss_pred             ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccc
Confidence            334445788999999888754  5677778999999999853                2455666 78999999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      .. -..|++|.--+.|++|...++.-...       ...+.+|+..|-.+.|+|....+|++||.||+|+|||+|.+...
T Consensus       222 ~~-~g~LlsGDc~~~I~lw~~~~g~W~vd-------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~  293 (440)
T KOG0302|consen  222 IK-TGRLLSGDCVKGIHLWEPSTGSWKVD-------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK  293 (440)
T ss_pred             cc-ccccccCccccceEeeeeccCceeec-------CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc
Confidence            64 34688887778899999886432211       34566799999999999988899999999999999999988532


Q ss_pred             CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (737)
                      .                      .+. .+.|...|+.|.|+...+ +||+|+.||+++|||+|..+.-          .+
T Consensus       294 ~----------------------~~~-~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~----------~p  339 (440)
T KOG0302|consen  294 A----------------------AVS-TKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG----------QP  339 (440)
T ss_pred             c----------------------eeE-eeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC----------Cc
Confidence            1                      111 156778999999999754 9999999999999999976532          11


Q ss_pred             ccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC
Q 004685          264 VNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      +..|       . .+..+|+++.|+| +...|++++.|..|.+||+.-..
T Consensus       340 VA~f-------k-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  340 VATF-------K-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             ceeE-------E-eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence            2222       1 2333799999999 45678888889999999997633

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=2.6e-20  Score=184.03  Aligned_cols=215  Identities=20%  Similarity=0.284  Sum_probs=171.2

Q ss_pred             cccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685           47 EGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        47 ~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~  125 (737)
                      .+|+.+|.+|+|+.+ .+.||+||.|.+|++||+.++++...+ ..|...|.+++|+|.. +..|++|+.|++|.+.|.+
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCC-ceEEEeccccceEEeeecc
Confidence            479999999999985 468999999999999999999999998 6899999999999987 8999999999999999999


Q ss_pred             CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                      .....         -..++ ..+.|-.++|.|.....++++..||+|+-+|+|....+                      
T Consensus       318 ~~~~s---------~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~----------------------  365 (463)
T KOG0270|consen  318 DPSNS---------GKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP----------------------  365 (463)
T ss_pred             Ccccc---------CceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc----------------------
Confidence            63321         12222 45779999999988889999999999999999987522                      


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  285 (737)
                        +.....|...|.++++++..+.++++++.|+.+++|++...++......                   .-.-+...|.
T Consensus       366 --vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~-------------------~~~~~rl~c~  424 (463)
T KOG0270|consen  366 --VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH-------------------SFKLGRLHCF  424 (463)
T ss_pred             --eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc-------------------cccccceeec
Confidence              4455578889999999999899999999999999999976543222110                   0111125566


Q ss_pred             EEcCCCC-EEEEEeCCCeEEEEEcCCCCccee
Q 004685          286 TFSPNGE-EVLLSYSGEHVYLMDVNHAGGRAM  316 (737)
Q Consensus       286 ~~sp~g~-~l~~g~~dg~v~iwd~~~~~~~~~  316 (737)
                      ++.|+-. +++.|+..+.++|||+.+......
T Consensus       425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k  456 (463)
T KOG0270|consen  425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK  456 (463)
T ss_pred             ccCCCcceEEEecCccceEEEeecccChhHHH
Confidence            7777654 466677788899999998654433

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=3.7e-20  Score=179.03  Aligned_cols=229  Identities=17%  Similarity=0.245  Sum_probs=172.9

Q ss_pred             cccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEE---EEEcccCccceEEEEEeeCCCCCEEEEE
Q 004685           38 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLL---HSIETGHSANVFCTKFVPETSDELVVSG  113 (737)
Q Consensus        38 ~~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~---~~~~~~h~~~V~~v~~sp~~~~~~l~sg  113 (737)
                      ...+++.++.+|.+.=.+|+|||- -..|+||..-+.|++|...++.-.   ..| .+|+..|..++|+|.. ...|++|
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE-~~vfaSc  276 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTE-DGVFASC  276 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccc-cccccchhhhccCCcc-CceEEee
Confidence            446888999999999999999993 335899999999999999887532   224 5799999999999987 7899999


Q ss_pred             ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (737)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~  193 (737)
                      +-||+|+|||++.....        +....+.|.+.|+.|.|+..- .+|++|+.||++++||+|..+..          
T Consensus       277 S~DgsIrIWDiRs~~~~--------~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~----------  337 (440)
T KOG0302|consen  277 SCDGSIRIWDIRSGPKK--------AAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG----------  337 (440)
T ss_pred             ecCceEEEEEecCCCcc--------ceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC----------
Confidence            99999999999975332        244558999999999999844 49999999999999999987632          


Q ss_pred             ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004685          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (737)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (737)
                                  ..+..+..|..+|+++.|+|.....|++++.|..|.+||+..-..........  ...+....|.-+.
T Consensus       338 ------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a--~~~L~dlPpQLLF  403 (440)
T KOG0302|consen  338 ------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEA--AEGLQDLPPQLLF  403 (440)
T ss_pred             ------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcccc--ccchhcCCceeEE
Confidence                        34666778999999999999988899999999999999997544322111110  0112233333333


Q ss_pred             CCCCcccceeEEEEcCCC-CEEEEEeCCCe
Q 004685          274 EHGRSSLHLTHVTFSPNG-EEVLLSYSGEH  302 (737)
Q Consensus       274 ~~~~~~~~i~~v~~sp~g-~~l~~g~~dg~  302 (737)
                      .|..+. .+..|.|++.- .+|++.+.||.
T Consensus       404 VHqGQk-e~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  404 VHQGQK-EVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             Eecchh-HhhhheeccCCCCeEEEecccce
Confidence            332222 48889999864 45666666753

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.84  E-value=3.2e-18  Score=177.66  Aligned_cols=229  Identities=12%  Similarity=0.165  Sum_probs=153.0

Q ss_pred             CCCcccccccccccccccccceeecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004685           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~  101 (737)
                      +.+.++.+.+|+.  .+.+....+.+|. .+.+++|+|+++.+ ++++.++.|++||..+++.+..+ ..+. .+..++|
T Consensus         6 s~~~d~~v~~~d~--~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~~-~~~~~~~   80 (300)
T TIGR03866         6 SNEKDNTISVIDT--ATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-PSGP-DPELFAL   80 (300)
T ss_pred             EecCCCEEEEEEC--CCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-cCCC-CccEEEE
Confidence            3456788999984  4556777777664 46789999999876 57778899999999998887776 3333 3567899


Q ss_pred             eeCCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC-cEEEEEcCC
Q 004685          102 VPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQ  179 (737)
Q Consensus       102 sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg-~I~vwdl~~  179 (737)
                      +|+  ++.+ +++..|+.|++||+....          .+..+. +...+.+++|+| ++.+++++..++ .+.+||..+
T Consensus        81 ~~~--g~~l~~~~~~~~~l~~~d~~~~~----------~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~  146 (300)
T TIGR03866        81 HPN--GKILYIANEDDNLVTVIDIETRK----------VLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKT  146 (300)
T ss_pred             CCC--CCEEEEEcCCCCeEEEEECCCCe----------EEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCC
Confidence            999  5655 455678999999998522          123332 233467899999 557777777664 467788876


Q ss_pred             CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEE-EEEeCCCcEEEEECCCCCCcccccCCC
Q 004685          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRM  258 (737)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~t~s~Dg~i~iwd~~~~~~~~~~~~~~  258 (737)
                      .+..              ..        +.    ......+++|+|++ +++ +++..++.|++||+++++.+..+....
T Consensus       147 ~~~~--------------~~--------~~----~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~  199 (300)
T TIGR03866       147 YEIV--------------DN--------VL----VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVIKKITFEI  199 (300)
T ss_pred             CeEE--------------EE--------EE----cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence            5421              00        00    01234578999985 555 455569999999999876544332110


Q ss_pred             CCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE-eCCCeEEEEEcCCC
Q 004685          259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNHA  311 (737)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g-~~dg~v~iwd~~~~  311 (737)
                      ..           .  . ........++|+|++++++++ +.++.+.+||+.++
T Consensus       200 ~~-----------~--~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       200 PG-----------V--H-PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             cc-----------c--c-cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            00           0  0 000124468899999986665 44678999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.5e-18  Score=163.88  Aligned_cols=261  Identities=15%  Similarity=0.188  Sum_probs=183.2

Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (737)
Q Consensus        47 ~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw  122 (737)
                      .+|.+-|+|+.|.+.|+++|+|+.|++|+|||....    .+.... +.|.+.|..|.|.+-.-|+.+++|+.|+++.||
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            379999999999999999999999999999997543    344555 689999999999875558999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCC------CC-------CC
Q 004685          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCP------PA-------GS  188 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~------~~-------~~  188 (737)
                      .-....... ....+....++......|+++.|.|.. +-.|++++.||.+++|+.-......      .+       ..
T Consensus        89 EE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   89 EEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeccccccc-ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            864221111 112234456677788899999999853 3478999999999999864332110      00       00


Q ss_pred             CC---------------------------CccceEEEeccCC--ceeeccCCCCCccceEEEEEecCCC---cEEEEEeC
Q 004685          189 SH---------------------------QECRNILLDLRCG--AKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGS  236 (737)
Q Consensus       189 ~~---------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~i~~sp~~~---~~l~t~s~  236 (737)
                      .+                           .-....++....+  +-..+...+.++.+|++++|.|.-+   .+||+++.
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence            00                           0112233333222  2345667788999999999999753   47999999


Q ss_pred             CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          237 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      || |+||.++....-- ...+...+..+..+....+...+.+.+.|..+.|.-.|..|.+.+.||+|++|...-.
T Consensus       248 Dg-v~I~~v~~~~s~i-~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAI-EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             Cc-EEEEEEeeccchh-hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence            99 9999998532111 1111122223333333344445555557999999999999999999999999986653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=5.6e-21  Score=198.85  Aligned_cols=238  Identities=16%  Similarity=0.252  Sum_probs=200.1

Q ss_pred             eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004685           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd  123 (737)
                      +.+-.|...|.|+..-..++.+++|+.|..+.+|.+..--.+..+ .+|..+|.|+.|++.  ..+|++|+.+|+|++||
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~--E~LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTS--ERLLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcc--hhhhcccccCCceeeee
Confidence            455679999999998778899999999999999999887777777 799999999999998  68999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (737)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (737)
                      +...          +.++++.+|...+.++.|+| -+.++++|+.|+.+++||.+...+                     
T Consensus        99 leeA----------k~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc---------------------  146 (825)
T KOG0267|consen   99 LEEA----------KIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGC---------------------  146 (825)
T ss_pred             hhhh----------hhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCc---------------------
Confidence            9852          33788999999999999999 668889999999999999986542                     


Q ss_pred             ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (737)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (737)
                          ...+.+|...+..+.|+|+ +.+++.++.|..++|||+..++.+..|.                    +|.+ .+.
T Consensus       147 ----~~~~~s~~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk~~~ef~--------------------~~e~-~v~  200 (825)
T KOG0267|consen  147 ----SHTYKSHTRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGKLSKEFK--------------------SHEG-KVQ  200 (825)
T ss_pred             ----eeeecCCcceeEEEeecCC-CceeeccCCcceeeeecccccccccccc--------------------cccc-ccc
Confidence                2233457788999999997 6899999999999999999888766653                    2333 588


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCC
Q 004685          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI  342 (737)
Q Consensus       284 ~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  342 (737)
                      .+.|+|..-.++.|+.|++|++||+++.............+....|+|+........+.
T Consensus       201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            89999999999999999999999999866555555557788889999987766555443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=1.2e-19  Score=167.68  Aligned_cols=230  Identities=13%  Similarity=0.140  Sum_probs=141.0

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      ..+...|++|.+.|+++.|..+++ |.+|..-|.|++|++.+......+...|...|+.+.--|+   ..+.+-+.|+.+
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L   79 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLL   79 (323)
T ss_pred             CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceE
Confidence            346778899999999999987765 8899999999999999998888774367889999998886   678999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC-cEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILL  198 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg-~I~vwdl~~~~~~~~~~~~~~~~~~~~~  198 (737)
                      .+|++..             ......|+-.++++.|++.   -+...+... ..-.++-+..... .+......+...+.
T Consensus        80 ~lw~ia~-------------s~~i~i~Si~~nslgFCrf---Sl~~~~k~~eqll~yp~rgsde~-h~~D~g~~tqv~i~  142 (323)
T KOG0322|consen   80 ILWTIAY-------------SAFISIHSIVVNSLGFCRF---SLVKKPKNSEQLLEYPSRGSDET-HKQDGGDTTQVQIA  142 (323)
T ss_pred             EEEEccC-------------cceEEEeeeeccccccccc---eeccCCCcchhheecCCcccchh-hhhccCccceeEcc
Confidence            9999985             2233446666677777652   122222211 1112221111110 00000000000000


Q ss_pred             eccCCceeeccCCCCCccceEEEEEecCCCc--EEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004685          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPH--LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (737)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~--~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (737)
                      +         .......+.+.+..+....+.  ++++|-.+|.+-+||+.++..+-.+....          +.......
T Consensus       143 d---------d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~----------kv~~~~as  203 (323)
T KOG0322|consen  143 D---------DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS----------KVESPNAS  203 (323)
T ss_pred             C---------chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc----------ccccchhh
Confidence            0         011123455666654433322  56778889999999999875433332110          00111112


Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      |. .++.++.|.+.-..=++|+.+..+..|+++.
T Consensus       204 h~-qpvlsldyas~~~rGisgga~dkl~~~Sl~~  236 (323)
T KOG0322|consen  204 HK-QPVLSLDYASSCDRGISGGADDKLVMYSLNH  236 (323)
T ss_pred             cc-CcceeeeechhhcCCcCCCccccceeeeecc
Confidence            33 3689999887666667777777888887765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.82  E-value=1.8e-19  Score=186.73  Aligned_cols=249  Identities=14%  Similarity=0.163  Sum_probs=203.3

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeC-CCCCEEEEEECCCcEEEEecCCCC
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      .-.|.+++++|+|++||+|..-|+++||++...+....+ ..|+..|.|+.|+.. ....+|++++.|..|.+||+... 
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-  536 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-  536 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-
Confidence            457999999999999999999999999999998888888 799999999999853 22368999999999999999853 


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                              +.+++++.+|+..|+++.|...+. ..+++++.|+.|.+--.+.....                    ....
T Consensus       537 --------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g--------------------~~f~  588 (1080)
T KOG1408|consen  537 --------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSG--------------------RLFP  588 (1080)
T ss_pred             --------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCc--------------------eecc
Confidence                    355889999999999999987443 46789999988775433322110                    0000


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                      ..........++.|+..|. ..++++++.|..|+|||+.++++.+.|...                 ++|.+ ....+..
T Consensus       589 r~t~t~~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sgKq~k~FKgs-----------------~~~eG-~lIKv~l  649 (1080)
T KOG1408|consen  589 RHTQTLSKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESGKQVKSFKGS-----------------RDHEG-DLIKVIL  649 (1080)
T ss_pred             ccccccccceEEEeeeCCC-cceEEEEecccceEEEeccccceeeeeccc-----------------ccCCC-ceEEEEE
Confidence            1111123456889999997 589999999999999999999988776543                 34444 4667899


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCccc
Q 004685          288 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQ  347 (737)
Q Consensus       288 sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  347 (737)
                      .|.|-||++.+.|.++.++|..+++....+++|++.++.+.|.++-+.+-....+++++.
T Consensus       650 DPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFv  709 (1080)
T KOG1408|consen  650 DPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFV  709 (1080)
T ss_pred             CCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEE
Confidence            999999999999999999999999999999999999999999999999888888877764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=2.5e-18  Score=161.13  Aligned_cols=284  Identities=16%  Similarity=0.182  Sum_probs=198.0

Q ss_pred             CCCCcccccccccccccc----------cccc---eeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004685           22 TRPDVNHSLQMHSSLVRR----------LSQE---RELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHS   87 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~----------~~~~---~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~   87 (737)
                      -+++.++.+.+||..-.+          .+.+   ..-.+|+..|..+.|-| |.-++.+++-|.+++|||..+.+....
T Consensus        60 lSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~  139 (397)
T KOG4283|consen   60 LSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD  139 (397)
T ss_pred             eecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEE
Confidence            357788889898842211          1110   11236889999999999 677888999999999999999988877


Q ss_pred             EcccCccceEEEEEeeCCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEE
Q 004685           88 IETGHSANVFCTKFVPETSD-ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA  166 (737)
Q Consensus        88 ~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  166 (737)
                      |  ..++.|.+-+|+|-... .++++|..|-.|++.|+..+.          +.+++.+|.+.|.++.|+|...-+|++|
T Consensus       140 F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs----------~sH~LsGHr~~vlaV~Wsp~~e~vLatg  207 (397)
T KOG4283|consen  140 F--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS----------FSHTLSGHRDGVLAVEWSPSSEWVLATG  207 (397)
T ss_pred             e--ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc----------ceeeeccccCceEEEEeccCceeEEEec
Confidence            7  36788999999996422 367778888999999999743          3789999999999999999888899999


Q ss_pred             eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC-ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG-AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       167 s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~  245 (737)
                      +.||.|++||++...-          |. ...|..++ ....+...+.|.+.+++++|..+ +.++++++.|..+++|+.
T Consensus       208 saDg~irlWDiRrasg----------cf-~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  208 SADGAIRLWDIRRASG----------CF-RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             CCCceEEEEEeecccc----------ee-EEeecccCccCccccccccccceeeeeeeccc-chhhhhccCccceEEeec
Confidence            9999999999997632          22 22233332 22334457789999999999997 689999999999999999


Q ss_pred             CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCe
Q 004685          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK  325 (737)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~  325 (737)
                      .++..-            +..+.+..-....+..  +. +. +-+...++.--.++.+.++++-++.....+..+...+.
T Consensus       276 ~~G~nt------------l~~~g~~~~n~~~~~~--~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~  339 (397)
T KOG4283|consen  276 ESGRNT------------LREFGPIIHNQTTSFA--VH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRIN  339 (397)
T ss_pred             ccCccc------------ccccccccccccccce--EE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceee
Confidence            877632            1111111111111111  22 22 22323233333357777777777777666666666777


Q ss_pred             eeeeccCCCCccCCCCCCCc
Q 004685          326 IMSFTPTLNGLELQPPIHDF  345 (737)
Q Consensus       326 ~~~~~p~~~~~~~~~~~~~~  345 (737)
                      +..|.|+.+...........
T Consensus       340 c~~~~~~fq~~~tg~~d~ni  359 (397)
T KOG4283|consen  340 CAAYRPDFEQCFTGDMNGNI  359 (397)
T ss_pred             EEeecCchhhhhccccCCcc
Confidence            77777776655554444333

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=2.7e-19  Score=178.46  Aligned_cols=252  Identities=16%  Similarity=0.227  Sum_probs=193.5

Q ss_pred             CCCCCccccccccccccccc--ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEE
Q 004685           21 DTRPDVNHSLQMHSSLVRRL--SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC   98 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~   98 (737)
                      -.+...++.+++|..--+..  .....+.|.  .-.|++......++++|+..+.|+|||+... .++.+..+|++.|++
T Consensus        50 vas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~  126 (673)
T KOG4378|consen   50 VASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTY  126 (673)
T ss_pred             EeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH-HHhhhccCCcceeEE
Confidence            44556677888887554432  223333343  3334444444589999999999999999954 444454899999999


Q ss_pred             EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeecc-CCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004685           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (737)
Q Consensus        99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl  177 (737)
                      +.++..  ..+|++++..|.|.|..+.++..          ...+.. ....|.-+.++|....+|.+++.+|.|.+||+
T Consensus       127 v~YN~~--DeyiAsvs~gGdiiih~~~t~~~----------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv  194 (673)
T KOG4378|consen  127 VDYNNT--DEYIASVSDGGDIIIHGTKTKQK----------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV  194 (673)
T ss_pred             EEecCC--cceeEEeccCCcEEEEecccCcc----------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence            999988  68999999999999999987432          223332 24566789999988889999999999999999


Q ss_pred             CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC
Q 004685          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (737)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~  257 (737)
                      ....+.                        ......|..+...++|+|.++.+|++.+.|..|.+||.+.......+.. 
T Consensus       195 ~g~sp~------------------------~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-  249 (673)
T KOG4378|consen  195 QGMSPI------------------------FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-  249 (673)
T ss_pred             cCCCcc------------------------cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-
Confidence            876643                        4445568888999999999999999999999999999997654433321 


Q ss_pred             CCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccee-eeecCCCCeeeeeccCC
Q 004685          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPTL  333 (737)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~p~~  333 (737)
                                        .|   +.+.++|+++|.+|++|+..|.|+.||++..+.+.. ...+...++.++|.|..
T Consensus       250 ------------------~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  250 ------------------SH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ------------------cC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence                              11   588999999999999999999999999998776554 44567778999998875

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.81  E-value=8.5e-19  Score=182.12  Aligned_cols=240  Identities=16%  Similarity=0.177  Sum_probs=194.2

Q ss_pred             CCCcccccccccccccccccceeecccCCceEE-EEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEE
Q 004685           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNA-ISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK  100 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~-l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~  100 (737)
                      +++-++++++|+...+..-....+.+|.+-|.+ +++-+ ++-+|++|+.|+.|.+|...+...+..+ .+|+..|+|+.
T Consensus        30 s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls  108 (745)
T KOG0301|consen   30 SGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLS  108 (745)
T ss_pred             ecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh-hccccceeeee
Confidence            455678899999766666777889999998888 88876 5567999999999999999999999988 89999999999


Q ss_pred             EeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004685          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (737)
Q Consensus       101 ~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~  180 (737)
                      ...+  +. +++|+.|.++++|....            ....+.+|+..|++++.-|.+  .++|||.|++|++|.-.+ 
T Consensus       109 ~~~~--~~-~iSgSWD~TakvW~~~~------------l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~-  170 (745)
T KOG0301|consen  109 IGED--GT-LISGSWDSTAKVWRIGE------------LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGT-  170 (745)
T ss_pred             cCCc--Cc-eEecccccceEEecchh------------hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccCCc-
Confidence            8777  34 99999999999998873            256689999999999999844  777999999999997532 


Q ss_pred             CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004685          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (737)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (737)
                                                .+..+.+|...|.++++-++  ..|++|+.||.|++|++. +..+.+.      
T Consensus       171 --------------------------~l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~~-ge~l~~~------  215 (745)
T KOG0301|consen  171 --------------------------LLKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDLD-GEVLLEM------  215 (745)
T ss_pred             --------------------------hhhhhccchhheeeeEEecC--CCeEeecCCceEEEEecc-Cceeeee------
Confidence                                      25566778999999999985  489999999999999994 4332222      


Q ss_pred             CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004685          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (737)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (737)
                                    ++|.. -|.++...+++..+++++.|++++||+..  .........+-.++..++-+.+
T Consensus       216 --------------~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng  271 (745)
T KOG0301|consen  216 --------------HGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG  271 (745)
T ss_pred             --------------eccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC
Confidence                          66766 49999988888999999999999999987  3344444445455666655543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=1e-17  Score=163.98  Aligned_cols=214  Identities=17%  Similarity=0.262  Sum_probs=155.4

Q ss_pred             CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe---------EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        50 ~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~---------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      ..+|..+.|.++.. +||||+.|..|+||-+..+.         ....+ ..|...|++|.|+|+  |++|++|+.+|.|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~--gelLASg~D~g~v   89 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPD--GELLASGGDGGEV   89 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCC--cCeeeecCCCceE
Confidence            36899999999766 99999999999999886432         22334 689999999999999  8999999999999


Q ss_pred             EEEecCCCCC----CCC--CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685          120 RLFNLSRFSG----RGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (737)
Q Consensus       120 ~iwd~~~~~~----~~~--~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~  193 (737)
                      .+|-......    .+.  ....+.....+.+|...|..++|+| ++.++++++.|..+++||+..+..           
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l-----------  157 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQL-----------  157 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecccee-----------
Confidence            9998762111    000  1112333456778999999999999 668999999999999999999873           


Q ss_pred             ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC--------CCCCCCcc
Q 004685          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR--------MSPPPCVN  265 (737)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~  265 (737)
                                    ......|...+..++|.|. .+++++-+.|...+.+++...+.+..+...        .......+
T Consensus       158 --------------~~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r  222 (434)
T KOG1009|consen  158 --------------LAILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR  222 (434)
T ss_pred             --------------Eeeccccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence                          3334567788999999997 589999999998888888766544333210        00111111


Q ss_pred             ccccccccCCCCcccceeEEEEcCCCCEEEEEeC
Q 004685          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (737)
Q Consensus       266 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~  299 (737)
                      .|....+      ..-...++|+|+|..|++...
T Consensus       223 LfhDeTl------ksFFrRlsfTPdG~llvtPag  250 (434)
T KOG1009|consen  223 LFHDETL------KSFFRRLSFTPDGSLLVTPAG  250 (434)
T ss_pred             eeecCch------hhhhhhcccCCCCcEEEcccc
Confidence            1111111      112567899999999988764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=4.3e-17  Score=154.56  Aligned_cols=177  Identities=15%  Similarity=0.165  Sum_probs=122.8

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      ++|...|++++|+.+  |..|++++.|++|+||+++....+.     .++++.-.. -+..+.+.|.|+-..+++++-..
T Consensus        83 KgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~e-----Hr~~R~nve-~dhpT~V~FapDc~s~vv~~~~g  154 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKE-----HRCIRQNVE-YDHPTRVVFAPDCKSVVVSVKRG  154 (420)
T ss_pred             hccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhh-----hhHhhcccc-CCCceEEEECCCcceEEEEEccC
Confidence            799999999999999  8999999999999999998644322     111221111 22467899999877788888888


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      .++++|.+...+--      ......+-+|       ...+...|...+..+-.... +.+|++++.|..|.+|+++ ++
T Consensus       155 ~~l~vyk~~K~~dG------~~~~~~v~~D-------~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDG------SGSHHFVHID-------NLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             CEEEEEEeeecccC------CCCccccccc-------ccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cc
Confidence            89999988765421      0000011111       12233345556666666654 6899999999999999999 66


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .+..+...                     ...-...+.||+|++|++++.---|++|.+--
T Consensus       220 ~L~~idtn---------------------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f  259 (420)
T KOG2096|consen  220 LLQSIDTN---------------------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIF  259 (420)
T ss_pred             eeeeeccc---------------------cccccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence            55444211                     00244578999999999999988999997543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=5.9e-18  Score=172.35  Aligned_cols=233  Identities=22%  Similarity=0.332  Sum_probs=162.5

Q ss_pred             cccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--------CeEEEEEcccCccceEEEEEeeCCCC
Q 004685           36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------RKLLHSIETGHSANVFCTKFVPETSD  107 (737)
Q Consensus        36 ~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~--------~~~~~~~~~~h~~~V~~v~~sp~~~~  107 (737)
                      ..+++.+..+++.|.+.|+.++|+|-...|++|+.||.|++|++..        -+.+.+| .+|.++|.|+++.++  +
T Consensus       280 ~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n--~  356 (577)
T KOG0642|consen  280 FTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSN--G  356 (577)
T ss_pred             hheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCC--c
Confidence            3445666678999999999999999999999999999999999932        2467788 799999999999999  7


Q ss_pred             CEEEEEECCCcEEEEecCCCCCCCCCCCC-CCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 004685          108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (737)
Q Consensus       108 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~  186 (737)
                      ..+++|+.||+|+.|++. ......+... ......+.+|++.|+.+++++ ....|++|+.||+++.|+.....++.  
T Consensus       357 ~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~--  432 (577)
T KOG0642|consen  357 EHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCT--  432 (577)
T ss_pred             eEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccc--
Confidence            999999999999999877 2322211111 122457889999999999998 55778899999999999987765410  


Q ss_pred             CCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccc
Q 004685          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (737)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (737)
                                            ...+...+...++.|-.......++...-+.--++++...+.+..+.....+..    
T Consensus       433 ----------------------f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~----  486 (577)
T KOG0642|consen  433 ----------------------FGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP----  486 (577)
T ss_pred             ----------------------cCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc----
Confidence                                  000111122344444433223333333333333444444443333322211110    


Q ss_pred             cccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       267 ~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                                .....+..+.++|.+...+++..|+.|+++|..++
T Consensus       487 ----------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~  521 (577)
T KOG0642|consen  487 ----------RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG  521 (577)
T ss_pred             ----------cccCccceEEecCCCCeeEecccCCceeccccccc
Confidence                      11224888999999999999999999999998874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.8e-18  Score=189.93  Aligned_cols=272  Identities=19%  Similarity=0.224  Sum_probs=200.7

Q ss_pred             cCCCCCccccccccccccccc----ccceeecccCCceEEEEEcCCCCE----EEEEeCCCcEEEEECCCC------eEE
Q 004685           20 TDTRPDVNHSLQMHSSLVRRL----SQERELEGHQGCVNAISWNSKGSL----LISGSDDTHINVWSYSSR------KLL   85 (737)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~H~~~V~~l~~s~~g~~----lasgs~dg~V~vwd~~~~------~~~   85 (737)
                      ++.+-+...++.++.......    ++...+. -...-+.|+|.+.|..    ||.|..||.|.+||...-      ..+
T Consensus        31 ~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l  109 (1049)
T KOG0307|consen   31 FDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL  109 (1049)
T ss_pred             cccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH
Confidence            344455666677766544443    3455554 2457889999997654    899999999999998752      234


Q ss_pred             EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004685           86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  165 (737)
Q Consensus        86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  165 (737)
                      .++ ..|++.|..+.|++.. +++|++|+.||.|.|||++..+...      .  ..-....+.|.+++|+....++|++
T Consensus       110 a~~-~~h~G~V~gLDfN~~q-~nlLASGa~~geI~iWDlnn~~tP~------~--~~~~~~~~eI~~lsWNrkvqhILAS  179 (1049)
T KOG0307|consen  110 ATK-SKHTGPVLGLDFNPFQ-GNLLASGADDGEILIWDLNKPETPF------T--PGSQAPPSEIKCLSWNRKVSHILAS  179 (1049)
T ss_pred             hhh-cccCCceeeeeccccC-CceeeccCCCCcEEEeccCCcCCCC------C--CCCCCCcccceEeccchhhhHHhhc
Confidence            445 6899999999999996 7799999999999999999744221      0  1122356789999999888889999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC---cEEE
Q 004685          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARL  242 (737)
Q Consensus       166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg---~i~i  242 (737)
                      ++.+|++.|||++..+++...                      ... .....+..++|+|++...+++++.|.   .|.+
T Consensus       180 ~s~sg~~~iWDlr~~~pii~l----------------------s~~-~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql  236 (1049)
T KOG0307|consen  180 GSPSGRAVIWDLRKKKPIIKL----------------------SDT-PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL  236 (1049)
T ss_pred             cCCCCCceeccccCCCccccc----------------------ccC-CCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence            999999999999998754111                      111 11245788999999888888888764   6999


Q ss_pred             EECCCCC-CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCcceeeeec
Q 004685          243 YDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRYTV  320 (737)
Q Consensus       243 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g-~~l~~g~~dg~v~iwd~~~~~~~~~~~~~  320 (737)
                      ||+|... +++.+                    .+|.. .|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+...
T Consensus       237 WDlR~assP~k~~--------------------~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~  295 (1049)
T KOG0307|consen  237 WDLRFASSPLKIL--------------------EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ  295 (1049)
T ss_pred             ecccccCCchhhh--------------------ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC
Confidence            9998543 22221                    33554 59999999966 88999999999999999998888777778


Q ss_pred             CCCCeeeeeccCCC-CccCCCCCCCcc
Q 004685          321 GDASKIMSFTPTLN-GLELQPPIHDFL  346 (737)
Q Consensus       321 ~~~~~~~~~~p~~~-~~~~~~~~~~~~  346 (737)
                      +.....+.|.|... .++...-.+.+.
T Consensus       296 ~nW~fdv~w~pr~P~~~A~asfdgkI~  322 (1049)
T KOG0307|consen  296 GNWCFDVQWCPRNPSVMAAASFDGKIS  322 (1049)
T ss_pred             CcceeeeeecCCCcchhhhheecccee
Confidence            89999999999876 334444344333

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=5.5e-17  Score=155.59  Aligned_cols=199  Identities=13%  Similarity=0.216  Sum_probs=151.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCcee
Q 004685           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  142 (737)
Q Consensus        63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~  142 (737)
                      ..+|++-..|.|++||..+++.+..| +++...++.++|.....+..+.+|+.||+|++||++......        ...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a--------~~~  111 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA--------RIS  111 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--------hee
Confidence            56888888999999999999999999 899999999999986447899999999999999999754422        344


Q ss_pred             eccCC-CceeEEEEecCCCcEEEEEe----CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccc
Q 004685          143 YQCHT-RRVKKLAVEVGNPHVVWSAS----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  217 (737)
Q Consensus       143 ~~~h~-~~v~~l~~~p~~~~~l~s~s----~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (737)
                      ...+. .+..+++... ..+++++|.    .|-.|.+||+|..+..                       ...-...|...
T Consensus       112 ~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~-----------------------l~~~~eSH~DD  167 (376)
T KOG1188|consen  112 WTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQL-----------------------LRQLNESHNDD  167 (376)
T ss_pred             ccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccch-----------------------hhhhhhhccCc
Confidence            45555 4566676654 456776664    3568999999988742                       01122357789


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC-CEEEE
Q 004685          218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLL  296 (737)
Q Consensus       218 v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g-~~l~~  296 (737)
                      |++++|+|.++++|++|+.||.|.+||+..-..--.         ....+         ..+..|.++.|+.++ +.|.+
T Consensus       168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa---------L~~vi---------N~~sSI~~igw~~~~ykrI~c  229 (376)
T KOG1188|consen  168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA---------LLHVI---------NHGSSIHLIGWLSKKYKRIMC  229 (376)
T ss_pred             ceeEEecCCCCCeEEeecccceEEeeecCCCcchhh---------HHHhh---------cccceeeeeeeecCCcceEEE
Confidence            999999999999999999999999999975321100         01110         112249999999877 45888


Q ss_pred             EeCCCeEEEEEcCCCC
Q 004685          297 SYSGEHVYLMDVNHAG  312 (737)
Q Consensus       297 g~~dg~v~iwd~~~~~  312 (737)
                      -+..+...+|+++.+.
T Consensus       230 lTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  230 LTHMETFAIYELEDGS  245 (376)
T ss_pred             EEccCceeEEEccCCC
Confidence            8889999999999864

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.77  E-value=3.4e-17  Score=156.08  Aligned_cols=226  Identities=15%  Similarity=0.212  Sum_probs=158.0

Q ss_pred             ecccCCceEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCe---EEEEEcc-cCccceEEEEEeeCCC--CCEEEEEE
Q 004685           46 LEGHQGCVNAISWNS-----KGSLLISGSDDTHINVWSYSSRK---LLHSIET-GHSANVFCTKFVPETS--DELVVSGA  114 (737)
Q Consensus        46 l~~H~~~V~~l~~s~-----~g~~lasgs~dg~V~vwd~~~~~---~~~~~~~-~h~~~V~~v~~sp~~~--~~~l~sgs  114 (737)
                      ..+|+.+|..++|++     +...+|+.+. ..+.||......   .++.+.. .|......++|+-+..  .-++|.++
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            346889999999985     2346667665 488999876543   3333322 3677788888987642  34788888


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                      .-|.|+|.|+...          +....+.+|...|+.+.++|..+++++++|.|.+|++|++++...+           
T Consensus       113 ~~GvIrVid~~~~----------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv-----------  171 (385)
T KOG1034|consen  113 YLGVIRVIDVVSG----------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV-----------  171 (385)
T ss_pred             ceeEEEEEecchh----------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE-----------
Confidence            9999999999863          2367788999999999999999999999999999999999998643           


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC--CCCCCCccccccc--
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR--MSPPPCVNYFCPM--  270 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~--  270 (737)
                                 ..+....+|...|.++.|+++ +.+|++++.|..|++|++...+....+...  ..+......|...  
T Consensus       172 -----------~VfGG~egHrdeVLSvD~~~~-gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~  239 (385)
T KOG1034|consen  172 -----------AVFGGVEGHRDEVLSVDFSLD-GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKT  239 (385)
T ss_pred             -----------EEecccccccCcEEEEEEcCC-CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccc
Confidence                       123344578899999999997 579999999999999999854422222111  1111111111111  


Q ss_pred             cc----cCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 004685          271 HL----SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (737)
Q Consensus       271 ~~----~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~  308 (737)
                      ++    ...-|.. .|-|+.|  -|.++++=+-++.|..|..
T Consensus       240 ~fp~fst~diHrn-yVDCvrw--~gd~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  240 HFPDFSTTDIHRN-YVDCVRW--FGDFILSKSCENAIVCWKP  278 (385)
T ss_pred             ccccccccccccc-hHHHHHH--HhhheeecccCceEEEEec
Confidence            00    1111222 3555555  3577888888888888865

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.4e-18  Score=190.70  Aligned_cols=233  Identities=16%  Similarity=0.196  Sum_probs=185.3

Q ss_pred             CCcccccccccccc----cccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEE-cccCccceE
Q 004685           24 PDVNHSLQMHSSLV----RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVF   97 (737)
Q Consensus        24 ~~~~~~~~~~~~~~----~~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~~~~-~~~h~~~V~   97 (737)
                      +..+++|.+|+...    .....+.++..|++.|..+.|++. +++||+|+.||.|.|||+.+-+.-... .....+.|.
T Consensus        86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~  165 (1049)
T KOG0307|consen   86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK  165 (1049)
T ss_pred             cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence            44778999999543    345677788899999999999995 559999999999999999875544333 123467899


Q ss_pred             EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCC--CceeEEEEecCCCcEEEEEeCCC---cE
Q 004685           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT--RRVKKLAVEVGNPHVVWSASEDG---TL  172 (737)
Q Consensus        98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~p~~~~~l~s~s~Dg---~I  172 (737)
                      +++|+..- ..+|++++.+|.+.|||++...          ++-.+..+.  ..+..++|+|++...+++++.|.   .|
T Consensus       166 ~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~----------pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi  234 (1049)
T KOG0307|consen  166 CLSWNRKV-SHILASGSPSGRAVIWDLRKKK----------PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI  234 (1049)
T ss_pred             Eeccchhh-hHHhhccCCCCCceeccccCCC----------cccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence            99999875 6789999999999999999642          233333333  34789999998888888888764   69


Q ss_pred             EEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcc
Q 004685          173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (737)
Q Consensus       173 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~  252 (737)
                      .+||+|.....                        +..+..|...|.++.|++.+..++++++.|++|.+|+.++++.+.
T Consensus       235 qlWDlR~assP------------------------~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~  290 (1049)
T KOG0307|consen  235 QLWDLRFASSP------------------------LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG  290 (1049)
T ss_pred             EeecccccCCc------------------------hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence            99999976533                        344457888999999999988999999999999999999988766


Q ss_pred             cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC
Q 004685          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~~  312 (737)
                      .+.                     ..+.++..+.|+|... .+++++-||.|.|+.+....
T Consensus       291 ~~p---------------------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  291 ELP---------------------AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ecC---------------------CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            553                     2334799999999665 77778889999999998865

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.76  E-value=4.9e-18  Score=169.70  Aligned_cols=231  Identities=11%  Similarity=0.133  Sum_probs=190.6

Q ss_pred             hhhccccCCC------CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004685           14 MLDTRHTDTR------PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS   87 (737)
Q Consensus        14 ~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~   87 (737)
                      |++.+.+.+.      ++.-.++.+||....+......|..-.-.+.+++.+||.++.++|..||.|.|||+.+...+..
T Consensus       467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq  546 (705)
T KOG0639|consen  467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ  546 (705)
T ss_pred             ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec
Confidence            5666666444      5567899999988888888788877667888999999999999999999999999999999999


Q ss_pred             EcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe
Q 004685           88 IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (737)
Q Consensus        88 ~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  167 (737)
                      | ++|++.+.||.++++  |..|-+|+.|.+|+.||++....          +.. ....+.|.++..+| .+..++.|-
T Consensus       547 f-qGhtDGascIdis~d--GtklWTGGlDntvRcWDlregrq----------lqq-hdF~SQIfSLg~cP-~~dWlavGM  611 (705)
T KOG0639|consen  547 F-QGHTDGASCIDISKD--GTKLWTGGLDNTVRCWDLREGRQ----------LQQ-HDFSSQIFSLGYCP-TGDWLAVGM  611 (705)
T ss_pred             c-cCCCCCceeEEecCC--CceeecCCCccceeehhhhhhhh----------hhh-hhhhhhheecccCC-Cccceeeec
Confidence            9 899999999999999  89999999999999999997432          111 12457899999999 668999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       168 ~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~  247 (737)
                      .++.+.+.......                          ......|+..|.++.|.+. ++++++.+.|+.+..|....
T Consensus       612 ens~vevlh~skp~--------------------------kyqlhlheScVLSlKFa~c-GkwfvStGkDnlLnawrtPy  664 (705)
T KOG0639|consen  612 ENSNVEVLHTSKPE--------------------------KYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPY  664 (705)
T ss_pred             ccCcEEEEecCCcc--------------------------ceeecccccEEEEEEeccc-CceeeecCchhhhhhccCcc
Confidence            99988888766543                          1122356788999999997 69999999999999998877


Q ss_pred             CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 004685          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (737)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~  308 (737)
                      +..+...                      .....|.++.+|.|.++|++|+.|.+..+|.+
T Consensus       665 GasiFqs----------------------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  665 GASIFQS----------------------KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccceeec----------------------cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            6544322                      11225999999999999999999999988875

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=3.9e-17  Score=154.67  Aligned_cols=270  Identities=14%  Similarity=0.146  Sum_probs=189.6

Q ss_pred             CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004685           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~  101 (737)
                      +.+=.++++.+||  ..++.+.+.|.+|..+|++++||+||++|+|++.|..|.+||+..|.+++.+.  ..++|+.+.|
T Consensus        39 AvGc~nG~vvI~D--~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~  114 (405)
T KOG1273|consen   39 AVGCANGRVVIYD--FDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQW  114 (405)
T ss_pred             eeeccCCcEEEEE--ccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE--ccCccceeee
Confidence            3355789999999  45555888999999999999999999999999999999999999999998883  6799999999


Q ss_pred             eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 004685          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (737)
Q Consensus       102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~  181 (737)
                      +|.. .+..+.+-.+..-.+-++..+....+      +...-........+..|++ .++++++|...|.+.++|..+.+
T Consensus       115 hp~k-~n~~va~~~~~sp~vi~~s~~~h~~L------p~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e  186 (405)
T KOG1273|consen  115 HPRK-RNKCVATIMEESPVVIDFSDPKHSVL------PKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLE  186 (405)
T ss_pred             cccc-CCeEEEEEecCCcEEEEecCCceeec------cCCCccccccccccccccC-CCCEEEEecCcceEEEEecchhe
Confidence            9986 55566665565566666654222211      0000000111122345777 77999999999999999998876


Q ss_pred             CCCCCCCCCCccceEEEeccCCceeeccCCCCC-ccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004685          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (737)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (737)
                      .+                         ..++.. ...|..+.|+.. +..|+.-+.|..||.|+++.......-   .. 
T Consensus       187 ~v-------------------------as~rits~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~~~~r~---~e-  236 (405)
T KOG1273|consen  187 CV-------------------------ASFRITSVQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDIDDEGRD---GE-  236 (405)
T ss_pred             ee-------------------------eeeeechheeeeEEEEecc-CcEEEEecCCceEEEEehhhhcccCcc---CC-
Confidence            43                         111111 256778888875 689999999999999998743211000   00 


Q ss_pred             CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCcceeeeecC-CCCeeeeeccCCCCccC
Q 004685          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVG-DASKIMSFTPTLNGLEL  338 (737)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~  338 (737)
                      +.....+.-.      -...+..+++||.+|.|+++|+. ...++||....|.....+.+.. ...-.+.|+|....++.
T Consensus       237 ~e~~~K~qDv------VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~s  310 (405)
T KOG1273|consen  237 VEPEHKLQDV------VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIAS  310 (405)
T ss_pred             cChhHHHHHH------HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeee
Confidence            0000111000      01114778999999999999987 5689999999988777777764 77777889997666555


Q ss_pred             C
Q 004685          339 Q  339 (737)
Q Consensus       339 ~  339 (737)
                      .
T Consensus       311 i  311 (405)
T KOG1273|consen  311 I  311 (405)
T ss_pred             c
Confidence            4

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.76  E-value=1.6e-17  Score=158.23  Aligned_cols=249  Identities=16%  Similarity=0.212  Sum_probs=175.0

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEc--ccCccceEEEE
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTK  100 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~~~~~--~~h~~~V~~v~  100 (737)
                      ++..+-|++-+  ..+.+..+.++||...|+.|.|+|+ .++|++|+.|..||+|++++..++..|-  .+|.+.|.++.
T Consensus       111 ~G~~GvIrVid--~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD  188 (385)
T KOG1034|consen  111 GGYLGVIRVID--VVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD  188 (385)
T ss_pred             ecceeEEEEEe--cchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence            34556666666  5566778889999999999999995 5799999999999999999999988872  47999999999


Q ss_pred             EeeCCCCCEEEEEECCCcEEEEecCCCCCCC--C---------------CCCCCCCc-eeeccCCCceeEEEEecCCCcE
Q 004685          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRG--L---------------DDNAITPS-ALYQCHTRRVKKLAVEVGNPHV  162 (737)
Q Consensus       101 ~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~--~---------------~~~~~~~~-~~~~~h~~~v~~l~~~p~~~~~  162 (737)
                      |+++  +.++++|+.|.+|++|++..++-..  .               .....-|. .+..-|..+|-|+.|-   +++
T Consensus       189 ~~~~--gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~  263 (385)
T KOG1034|consen  189 FSLD--GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDF  263 (385)
T ss_pred             EcCC--CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhh
Confidence            9999  7999999999999999998321100  0               00001111 1345688899999994   478


Q ss_pred             EEEEeCCCcEEEEEcCCC-CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccce--EEEEEecCCCcEEEEEeCCCc
Q 004685          163 VWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL--KSCDISSTRPHLLLVGGSDAF  239 (737)
Q Consensus       163 l~s~s~Dg~I~vwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~sp~~~~~l~t~s~Dg~  239 (737)
                      +++-|-++.|..|....- +.+..+. ....+..+           +..++-....+  ...+|+|- .++||.|...|.
T Consensus       264 ilSkscenaI~~w~pgkl~e~~~~vk-p~es~~Ti-----------~~~~~~~~c~iWfirf~~d~~-~~~la~gnq~g~  330 (385)
T KOG1034|consen  264 ILSKSCENAIVCWKPGKLEESIHNVK-PPESATTI-----------LGEFDYPMCDIWFIRFAFDPW-QKMLALGNQSGK  330 (385)
T ss_pred             eeecccCceEEEEecchhhhhhhccC-CCccceee-----------eeEeccCccceEEEEEeecHH-HHHHhhccCCCc
Confidence            889999999999987322 2111000 00111111           11111222233  34456675 579999999999


Q ss_pred             EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      |.+||++...+...          ..     ..  +...+..|...+|+.||..|+..+.|++|.-||.-
T Consensus       331 v~vwdL~~~ep~~~----------tt-----l~--~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  331 VYVWDLDNNEPPKC----------TT-----LT--HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEECCCCCCccC----------ce-----EE--eccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            99999997664211          00     01  22233469999999999999999999999999864

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.1e-16  Score=171.86  Aligned_cols=259  Identities=14%  Similarity=0.171  Sum_probs=192.1

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      -+.++.+++|+.....-++ .++.-|...|.+++.  ++.+|++|+.+++|.+|.+..++.-..+ ...+-++.+++|+-
T Consensus        31 cgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL-~Rftlp~r~~~v~g  106 (933)
T KOG1274|consen   31 CGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTIL-ARFTLPIRDLAVSG  106 (933)
T ss_pred             ecCCCceEEeecCCcccCC-chhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCcccee-eeeeccceEEEEec
Confidence            3456778888855443222 333337778887775  4569999999999999999887754444 44578999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      +  |.+++.|+.|-.|++-++.....          ...+.+|..+|.++.|+| .+++||+.+-||.|++||+..+...
T Consensus       107 ~--g~~iaagsdD~~vK~~~~~D~s~----------~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~  173 (933)
T KOG1274|consen  107 S--GKMIAAGSDDTAVKLLNLDDSSQ----------EKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILS  173 (933)
T ss_pred             C--CcEEEeecCceeEEEEeccccch----------heeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhh
Confidence            8  89999999999999999986443          578899999999999999 6799999999999999999987643


Q ss_pred             CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (737)
                      ........                .... .....+..++|+|++ ..+++...|+.|++|+...+.....+..       
T Consensus       174 ~tl~~v~k----------------~n~~-~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr~-------  228 (933)
T KOG1274|consen  174 KTLTGVDK----------------DNEF-ILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLRD-------  228 (933)
T ss_pred             hhcccCCc----------------cccc-cccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeecc-------
Confidence            11110000                0000 012356778999985 5777777899999999998775544321       


Q ss_pred             ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCC
Q 004685          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (737)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  340 (737)
                                 ..++. .+..+.|+|+|.||++++.||.|.|||+++-..    ......+.+++|.|..+.+.+..
T Consensus       229 -----------~~~ss-~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~  289 (933)
T KOG1274|consen  229 -----------KLSSS-KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLIT  289 (933)
T ss_pred             -----------ccccc-ceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEe
Confidence                       11222 389999999999999999999999999998222    33356677788999877765533

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2e-16  Score=164.49  Aligned_cols=164  Identities=12%  Similarity=0.139  Sum_probs=125.1

Q ss_pred             cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccC-CCceeEEEEecCCCcEEEEEeCC
Q 004685           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      -...+|.++||+..  .+.||.+-.||.|-||++...=         -....+.++ ...|.+++|.+ + ..|++.+.+
T Consensus        23 ~~Ps~I~slA~s~k--S~~lAvsRt~g~IEiwN~~~~w---------~~~~vi~g~~drsIE~L~W~e-~-~RLFS~g~s   89 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHK--SNQLAVSRTDGNIEIWNLSNNW---------FLEPVIHGPEDRSIESLAWAE-G-GRLFSSGLS   89 (691)
T ss_pred             eeccceEEEEEecc--CCceeeeccCCcEEEEccCCCc---------eeeEEEecCCCCceeeEEEcc-C-CeEEeecCC
Confidence            35688999999999  4789999999999999998621         112333333 56799999996 4 456689999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      |.|.-||+.+.++.                         .......+.|++++.+|. +..+++|+.||.+..++.....
T Consensus        90 g~i~EwDl~~lk~~-------------------------~~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p~~  143 (691)
T KOG2048|consen   90 GSITEWDLHTLKQK-------------------------YNIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGPDK  143 (691)
T ss_pred             ceEEEEecccCcee-------------------------EEecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCCce
Confidence            99999999988743                         111233578999999997 5899999999988888777554


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      ......                   -......|.+++|+|++..|++|+.||.|++||+.++.
T Consensus       144 I~~~r~-------------------l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~  187 (691)
T KOG2048|consen  144 ITYKRS-------------------LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ  187 (691)
T ss_pred             EEEEee-------------------cccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence            322211                   11223369999999999999999999999999999864

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=2.5e-17  Score=163.13  Aligned_cols=204  Identities=17%  Similarity=0.233  Sum_probs=165.7

Q ss_pred             hhhhhccccCCCCCcccccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcc
Q 004685           12 YDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIET   90 (737)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~   90 (737)
                      .-....+.+..+++.+++|++|+  +.+.++..++..|.+.|.+++|+| ...+|++|+.|++|.+.|.+.-...... -
T Consensus       250 s~n~~~~nVLaSgsaD~TV~lWD--~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~-w  326 (463)
T KOG0270|consen  250 SWNRNFRNVLASGSADKTVKLWD--VDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE-W  326 (463)
T ss_pred             HhccccceeEEecCCCceEEEEE--cCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce-E
Confidence            33445677899999999999999  788889999999999999999999 5689999999999999999842221111 1


Q ss_pred             cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004685           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (737)
Q Consensus        91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg  170 (737)
                      ...+.|-.++|.|.+ ...++++..||+|+-+|++...         +++..++.|.++|.++.+++..+.+++|++.|+
T Consensus       327 k~~g~VEkv~w~~~s-e~~f~~~tddG~v~~~D~R~~~---------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~  396 (463)
T KOG0270|consen  327 KFDGEVEKVAWDPHS-ENSFFVSTDDGTVYYFDIRNPG---------KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK  396 (463)
T ss_pred             EeccceEEEEecCCC-ceeEEEecCCceEEeeecCCCC---------CceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence            245789999999987 7788899999999999999754         558999999999999999998999999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004685          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (737)
Q Consensus       171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~  250 (737)
                      .|++|++....+..                       +....-.-+...|.++.|+...+++.|+..+.++|||+-+..+
T Consensus       397 ~Vklw~~~~~~~~~-----------------------v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  397 VVKLWKFDVDSPKS-----------------------VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             eEEEEeecCCCCcc-----------------------cccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            99999998765320                       0000001123677888888888999999999999999987654


Q ss_pred             c
Q 004685          251 L  251 (737)
Q Consensus       251 ~  251 (737)
                      +
T Consensus       454 V  454 (463)
T KOG0270|consen  454 V  454 (463)
T ss_pred             H
Confidence            4

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.75  E-value=5.5e-17  Score=161.15  Aligned_cols=267  Identities=16%  Similarity=0.150  Sum_probs=189.8

Q ss_pred             CCccccccccccc--ccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCccceEEE
Q 004685           24 PDVNHSLQMHSSL--VRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCT   99 (737)
Q Consensus        24 ~~~~~~~~~~~~~--~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~h~~~V~~v   99 (737)
                      +.-.++|-+|+.-  ......++-+..|.++|.+|.|+| +-..+++.+.||+|++-|+++......+. ......+.++
T Consensus       206 GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~  285 (498)
T KOG4328|consen  206 GDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSL  285 (498)
T ss_pred             ccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeec
Confidence            3445778888843  344556677889999999999999 55689999999999999998865433221 1244567788


Q ss_pred             EEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (737)
Q Consensus       100 ~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~  179 (737)
                      .|+.+  ...++.+..=|...+||.+.....         ...+.-|...|++++++|..+.+|+|++.|++++|||++.
T Consensus       286 d~~~e--~~~vl~~~~~G~f~~iD~R~~~s~---------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~  354 (498)
T KOG4328|consen  286 DFSAE--SRSVLFGDNVGNFNVIDLRTDGSE---------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ  354 (498)
T ss_pred             cccCC--CccEEEeecccceEEEEeecCCcc---------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhh
Confidence            88887  456666666679999999975432         3445668889999999999999999999999999999997


Q ss_pred             CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC----CCCCccccc
Q 004685          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPPLTSCQ  255 (737)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~----~~~~~~~~~  255 (737)
                      -.....                     .+.....|...|.+..|+|.++. |+|.+.|..|+|||..    ...+...+.
T Consensus       355 l~~K~s---------------------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~  412 (498)
T KOG4328|consen  355 LRGKAS---------------------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIP  412 (498)
T ss_pred             hcCCCC---------------------cceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceee
Confidence            653210                     12223457889999999999765 9999999999999984    222333332


Q ss_pred             CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeec--CCCCeeeeeccCC
Q 004685          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV--GDASKIMSFTPTL  333 (737)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~p~~  333 (737)
                      +...               .+..- ..-..+|.|+..++++|..-..|-|+|-..++.+..+...  ........|+|..
T Consensus       413 Hn~~---------------t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~  476 (498)
T KOG4328|consen  413 HNNR---------------TGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR  476 (498)
T ss_pred             ccCc---------------ccccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence            2111               11111 2445789999999999999889999998875533332222  2334456788876


Q ss_pred             CCccCC
Q 004685          334 NGLELQ  339 (737)
Q Consensus       334 ~~~~~~  339 (737)
                      ..++..
T Consensus       477 ~~~~aG  482 (498)
T KOG4328|consen  477 DTLAAG  482 (498)
T ss_pred             cceecc
Confidence            644443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2.9e-15  Score=160.82  Aligned_cols=239  Identities=18%  Similarity=0.248  Sum_probs=182.5

Q ss_pred             ccccccccccccccccceeecccCCceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCeEEEEEc--------------
Q 004685           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRKLLHSIE--------------   89 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g---~~lasgs~dg~V~vwd~~~~~~~~~~~--------------   89 (737)
                      ...|++|.  ..+...++.|.+|..+++.+.+.|..   .++++++.||.|++||...+..++++.              
T Consensus        36 ~~~V~VyS--~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~  113 (792)
T KOG1963|consen   36 GNFVKVYS--TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQ  113 (792)
T ss_pred             CCEEEEEe--cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhH
Confidence            35677777  67788888999999999999999854   467899999999999998776665542              


Q ss_pred             --------------------------------------------------------------------------------
Q 004685           90 --------------------------------------------------------------------------------   89 (737)
Q Consensus        90 --------------------------------------------------------------------------------   89 (737)
                                                                                                      
T Consensus       114 a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~  193 (792)
T KOG1963|consen  114 ADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTK  193 (792)
T ss_pred             hCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccce
Confidence                                                                                            


Q ss_pred             --------ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCc
Q 004685           90 --------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH  161 (737)
Q Consensus        90 --------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  161 (737)
                              ..|...++|.+++|+  +.++++|..||.|.+|.--..+..      ..-...+.-|...|.+++|++ ++.
T Consensus       194 ~~~~~~~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~~------~~t~t~lHWH~~~V~~L~fS~-~G~  264 (792)
T KOG1963|consen  194 HTSSRDITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSDD------SETCTLLHWHHDEVNSLSFSS-DGA  264 (792)
T ss_pred             eeccchhhhhhcccceeEEeccc--cceEEEeccCCcEEEEeccccccc------cccceEEEecccccceeEEec-CCc
Confidence                    145666899999999  799999999999999975431110      112456777899999999999 668


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEE
Q 004685          162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  241 (737)
Q Consensus       162 ~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~  241 (737)
                      +|++|+..|.+.+|.+.+++.                          ...|.-...|..+.++|+ +.+.++...|+.|.
T Consensus       265 ~LlSGG~E~VLv~Wq~~T~~k--------------------------qfLPRLgs~I~~i~vS~d-s~~~sl~~~DNqI~  317 (792)
T KOG1963|consen  265 YLLSGGREGVLVLWQLETGKK--------------------------QFLPRLGSPILHIVVSPD-SDLYSLVLEDNQIH  317 (792)
T ss_pred             eEeecccceEEEEEeecCCCc--------------------------ccccccCCeeEEEEEcCC-CCeEEEEecCceEE
Confidence            888999999999999998862                          233445678999999997 58889999999999


Q ss_pred             EEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 004685          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (737)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~  313 (737)
                      +..+.+......+.+..++.....         .+.. .-.+.++++|--+-++..+..|.|.+||+.+...
T Consensus       318 li~~~dl~~k~tIsgi~~~~~~~k---------~~~~-~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~  379 (792)
T KOG1963|consen  318 LIKASDLEIKSTISGIKPPTPSTK---------TRPQ-SLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDST  379 (792)
T ss_pred             EEeccchhhhhhccCccCCCcccc---------cccc-ccceeEEEcCCCCceeecCCCceEEEEeccccce
Confidence            998877665555443322211100         1111 1367789999777788999999999999998654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=9.4e-17  Score=156.51  Aligned_cols=231  Identities=17%  Similarity=0.253  Sum_probs=167.0

Q ss_pred             ceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe-------EEEEEcccCccceEEEEEeeCCCCCEEEEEE
Q 004685           43 ERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~-------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs  114 (737)
                      .-.+.||+++|..++|+| +...||+|+.|.+|.||.+..+.       .+..+ .+|...|--++|+|.. .+.|++++
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA-~NVLlsag  151 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTA-PNVLLSAG  151 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccc-hhhHhhcc
Confidence            345779999999999999 67899999999999999987543       34455 7999999999999987 78999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                      .|.+|.+|++.++..          +..+. |.+.|.++.|+. ++.+|++.+.|+.|++||.++++.+...        
T Consensus       152 ~Dn~v~iWnv~tgea----------li~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~--------  211 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEA----------LITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEG--------  211 (472)
T ss_pred             CCceEEEEeccCCce----------eeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeec--------
Confidence            999999999997543          34454 999999999999 6789999999999999999998854222        


Q ss_pred             eEEEeccCCceeeccCCCCCcc-ceEEEEEecCCCcEEEEEe---CCCcEEEEECCCCCCcccccCCCCCCCCccccccc
Q 004685          195 NILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  270 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~~l~t~s---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (737)
                                       ..|.+ .-....|-.+ +..+-||.   .+..+-+||....+.-..+          ..    
T Consensus       212 -----------------~~heG~k~~Raifl~~-g~i~tTGfsr~seRq~aLwdp~nl~eP~~~----------~e----  259 (472)
T KOG0303|consen  212 -----------------VAHEGAKPARAIFLAS-GKIFTTGFSRMSERQIALWDPNNLEEPIAL----------QE----  259 (472)
T ss_pred             -----------------ccccCCCcceeEEecc-CceeeeccccccccceeccCcccccCccee----------EE----
Confidence                             11211 1122334443 45444443   4678999998765421110          00    


Q ss_pred             cccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCcc---eeeeecCCCCeeeeeccC
Q 004685          271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGR---AMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       271 ~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~p~  332 (737)
                          - .....|.---|.|+...++.++. |+.|+.|.+......   ...+...++.+.+.|.|.
T Consensus       260 ----l-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  260 ----L-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             ----e-ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence                0 11123666678899988887776 999999999984411   123344666666666664

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=1.6e-16  Score=148.77  Aligned_cols=239  Identities=16%  Similarity=0.250  Sum_probs=174.1

Q ss_pred             ccccccceeec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEEc----ccCccceEEEEEeeCCCCCEE
Q 004685           37 VRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LHSIE----TGHSANVFCTKFVPETSDELV  110 (737)
Q Consensus        37 ~~~~~~~~~l~-~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~-~~~~~----~~h~~~V~~v~~sp~~~~~~l  110 (737)
                      ..+++++..|. .+-+.|.|+.|.|++..||+-. |..|.+|+++.+.. +..+.    ..|....++-+|+|..+++.+
T Consensus       109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv  187 (370)
T KOG1007|consen  109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV  187 (370)
T ss_pred             cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence            33455666666 5677999999999999998776 78999999998765 33321    245677889999996668888


Q ss_pred             EEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCC
Q 004685          111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  190 (737)
Q Consensus       111 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~  190 (737)
                      ++.+ |+++..||+++...         ....-.+|...|..+.|+|....+|++|+.||.|++||.+..+.+       
T Consensus       188 ~tt~-d~tl~~~D~RT~~~---------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p-------  250 (370)
T KOG1007|consen  188 ATTS-DSTLQFWDLRTMKK---------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP-------  250 (370)
T ss_pred             EEeC-CCcEEEEEccchhh---------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc-------
Confidence            7764 89999999996432         234456799999999999977789999999999999999987743       


Q ss_pred             CccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC----CC----C
Q 004685          191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS----PP----P  262 (737)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~----~~----~  262 (737)
                                       +...++|.-.++++.|+|...+++++|+.|..|.+|...+-.....+..+..    +.    .
T Consensus       251 -----------------v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dsee  313 (370)
T KOG1007|consen  251 -----------------VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEE  313 (370)
T ss_pred             -----------------ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHH
Confidence                             6677889999999999999889999999999999998865442222221110    00    0


Q ss_pred             CccccccccccCCCCcccceeEEEEcCCCCEEEEE-eCCCeEEEEEcCC
Q 004685          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH  310 (737)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g-~~dg~v~iwd~~~  310 (737)
                      -.+.+....+.....+...|.+++||.-..++++. +.||.+.|=.+..
T Consensus       314 r~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  314 RVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             hcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            00111111111222223369999999877776655 6699999876654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=1.5e-16  Score=149.19  Aligned_cols=232  Identities=16%  Similarity=0.279  Sum_probs=175.1

Q ss_pred             ccCCceEEEEEcCCC-----CEEEEEeCCCcEEEEECCC--CeEEE--EE----cccCccceEEEEEeeCCCCCEEEEEE
Q 004685           48 GHQGCVNAISWNSKG-----SLLISGSDDTHINVWSYSS--RKLLH--SI----ETGHSANVFCTKFVPETSDELVVSGA  114 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g-----~~lasgs~dg~V~vwd~~~--~~~~~--~~----~~~h~~~V~~v~~sp~~~~~~l~sgs  114 (737)
                      .|..+++.+-|.|+.     .+|||++.  .+|+|.+..  .+...  .+    ...+..++++..|+.-. .+++.+++
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSS  170 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSS  170 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeec
Confidence            588999999999975     36777764  799999873  22111  11    13467899999999865 78999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                      -|.++.|||+..+...       ..-..+-+|...|..|+|...+.++|++.+.||++++||+|..+..           
T Consensus       171 iDTTCTiWdie~~~~~-------~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-----------  232 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSG-------TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-----------  232 (364)
T ss_pred             ccCeEEEEEEeecccc-------ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-----------
Confidence            9999999999974110       0123456799999999999877789999999999999999987633           


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC-CcEEEEECCCCC-CcccccCCCCCCCCccccccccc
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHL  272 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  272 (737)
                      .++           ...+....++..++|++.+++++|+-..| ..|.|.|+|.-. ++..+                  
T Consensus       233 TII-----------YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L------------------  283 (364)
T KOG0290|consen  233 TII-----------YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL------------------  283 (364)
T ss_pred             eEE-----------ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh------------------
Confidence            222           22233356788999999999999987665 579999998532 21111                  


Q ss_pred             cCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc-----ceeeeecCCCCeeeeeccC
Q 004685          273 SEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGG-----RAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       273 ~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~p~  332 (737)
                        .+|.. .|+.++|.| ....|.+++.|..+-+||+.....     +...+..++.++.+.|+|.
T Consensus       284 --~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~  346 (364)
T KOG0290|consen  284 --RNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSS  346 (364)
T ss_pred             --hcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeeccc
Confidence              34554 699999999 567899999999999999987543     4455667888999999875

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.73  E-value=1.3e-16  Score=159.42  Aligned_cols=213  Identities=17%  Similarity=0.240  Sum_probs=172.2

Q ss_pred             ccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEE
Q 004685           19 HTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC   98 (737)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~   98 (737)
                      ....+.+..+.++||+  .+.....+.+++|+..|+++.++...++||+++..|.|.|..+.++.....|..+....|.-
T Consensus        92 ~y~~sgG~~~~Vkiwd--l~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl  169 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWD--LRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL  169 (673)
T ss_pred             eeeeccCcCceeeehh--hHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence            3456678889999999  45666778899999999999999999999999999999999999998877774344566779


Q ss_pred             EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004685           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (737)
Q Consensus        99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~  178 (737)
                      +.|+|.. ..+|.+++.+|.|.+||+....         ........|..+...|+|+|.+..+|++.+.|+.|.+||.+
T Consensus       170 l~ys~sk-r~lL~~asd~G~VtlwDv~g~s---------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  170 LRYSPSK-RFLLSIASDKGAVTLWDVQGMS---------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             eeccccc-ceeeEeeccCCeEEEEeccCCC---------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            9999986 6678899999999999998532         22455678999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCC
Q 004685          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKR  257 (737)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~  257 (737)
                      ..+...          .+                ....+...++|.++ |.+|++|...|.|..||+|..+ ++..+   
T Consensus       240 s~~s~~----------~l----------------~y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD~R~~k~Pv~v~---  289 (673)
T KOG4378|consen  240 SQASTD----------RL----------------TYSHPLSTVAFSEC-GTYLCAGNSKGELIAYDMRSTKAPVAVR---  289 (673)
T ss_pred             cccccc----------ee----------------eecCCcceeeecCC-ceEEEeecCCceEEEEecccCCCCceEe---
Confidence            665320          01                12346789999997 6899999999999999999654 22221   


Q ss_pred             CCCCCCccccccccccCCCCcccceeEEEEcCCC
Q 004685          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (737)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g  291 (737)
                                       +.|.. .|++++|-|..
T Consensus       290 -----------------sah~~-sVt~vafq~s~  305 (673)
T KOG4378|consen  290 -----------------SAHDA-SVTRVAFQPSP  305 (673)
T ss_pred             -----------------eeccc-ceeEEEeeecc
Confidence                             23444 49999998875

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=1.7e-17  Score=175.24  Aligned_cols=129  Identities=26%  Similarity=0.485  Sum_probs=117.1

Q ss_pred             cccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEE
Q 004685           32 MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV  111 (737)
Q Consensus        32 ~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~  111 (737)
                      .-.+.+++.+.++.|.||..+|.|..|...|.++++|+.|..|+||.+++..++... .+|.+.|+.++.+.+  ..+++
T Consensus       172 kPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~--n~~ia  248 (1113)
T KOG0644|consen  172 KPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSN--NTMIA  248 (1113)
T ss_pred             CcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccchh--hhhhh
Confidence            333567888999999999999999999999999999999999999999999999999 899999999999988  57899


Q ss_pred             EEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004685          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (737)
Q Consensus       112 sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~  178 (737)
                      +++.|..|++|.+...          .++..+.+|++.|++++|+|-.     +.+.||++++||.+
T Consensus       249 aaS~D~vIrvWrl~~~----------~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  249 AASNDKVIRVWRLPDG----------APVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             hcccCceEEEEecCCC----------chHHHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence            9999999999999863          4588899999999999999932     78899999999988

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.70  E-value=6e-16  Score=145.17  Aligned_cols=205  Identities=14%  Similarity=0.233  Sum_probs=155.0

Q ss_pred             ccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE--EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        48 ~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      .+..+++++.|+. +.++|.+++-|.+..|||++++..  +++-+-+|..+|..++|...+ -+.|++++.||.|++||+
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDL  226 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEe
Confidence            3567999999997 788999999999999999998743  333337899999999999965 689999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (737)
                      +..+....       +..-..-..+...++|++++.+++++-..| ..|.+.|+|....+                    
T Consensus       227 R~leHSTI-------IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp--------------------  279 (364)
T KOG0290|consen  227 RSLEHSTI-------IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP--------------------  279 (364)
T ss_pred             cccccceE-------EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc--------------------
Confidence            97544211       111111245778899999999999987665 56999999987533                    


Q ss_pred             ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (737)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (737)
                          +.....|...|++++|.|.....|+++++|..+.+||+...-.-..     .  .++.     .   .. .+..|+
T Consensus       280 ----va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~-----~--dPil-----a---y~-a~~EVN  339 (364)
T KOG0290|consen  280 ----VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG-----E--DPIL-----A---YT-AGGEVN  339 (364)
T ss_pred             ----eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC-----C--Cchh-----h---hh-ccceee
Confidence                6667789999999999999899999999999999999985432000     0  0000     0   01 122499


Q ss_pred             EEEEcC-CCCEEEEEeCC
Q 004685          284 HVTFSP-NGEEVLLSYSG  300 (737)
Q Consensus       284 ~v~~sp-~g~~l~~g~~d  300 (737)
                      .+.|+| .+.+|+++...
T Consensus       340 qi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  340 QIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             eeeecccCCCEEEEEecC
Confidence            999997 56677776654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=3.8e-16  Score=155.36  Aligned_cols=252  Identities=14%  Similarity=0.199  Sum_probs=185.2

Q ss_pred             CCCCCCCChhhhhhhccccCCCCCcccccccccccccccccceeecccC-CceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004685            2 ENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYS   80 (737)
Q Consensus         2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~s~~g~~lasgs~dg~V~vwd~~   80 (737)
                      ++||+....|.+  ...+.--..+-.+.+..|+....+...++.+.|+. ..+..+.++|++++|+..+..|.|.|-...
T Consensus       256 ~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak  333 (514)
T KOG2055|consen  256 EKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK  333 (514)
T ss_pred             ccCccceeeecC--CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh
Confidence            456666555555  11112222233455677887777777888888876 457788999999999999999999999999


Q ss_pred             CCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCce--eEEEEecC
Q 004685           81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV--KKLAVEVG  158 (737)
Q Consensus        81 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~p~  158 (737)
                      +++.+..+.  -.+.|..++|+.+  +..|++++.+|.|.+||++...          ++..+. ..+.|  ++++.++ 
T Consensus       334 T~eli~s~K--ieG~v~~~~fsSd--sk~l~~~~~~GeV~v~nl~~~~----------~~~rf~-D~G~v~gts~~~S~-  397 (514)
T KOG2055|consen  334 TKELITSFK--IEGVVSDFTFSSD--SKELLASGGTGEVYVWNLRQNS----------CLHRFV-DDGSVHGTSLCISL-  397 (514)
T ss_pred             hhhhhheee--eccEEeeEEEecC--CcEEEEEcCCceEEEEecCCcc----------eEEEEe-ecCccceeeeeecC-
Confidence            999998883  5788999999988  6888888889999999999742          244443 23333  4566667 


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC--
Q 004685          159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--  236 (737)
Q Consensus       159 ~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~--  236 (737)
                      ++.+||+|+..|.|.|||..+....                   .....+.....-...|++++|+|+ .++||.+|.  
T Consensus       398 ng~ylA~GS~~GiVNIYd~~s~~~s-------------------~~PkPik~~dNLtt~Itsl~Fn~d-~qiLAiaS~~~  457 (514)
T KOG2055|consen  398 NGSYLATGSDSGIVNIYDGNSCFAS-------------------TNPKPIKTVDNLTTAITSLQFNHD-AQILAIASRVK  457 (514)
T ss_pred             CCceEEeccCcceEEEeccchhhcc-------------------CCCCchhhhhhhheeeeeeeeCcc-hhhhhhhhhcc
Confidence            6789999999999999997654311                   112234444445678999999997 588888774  


Q ss_pred             CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          237 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      +..+|+-.+.+......++...                  ..-+.++||+|||.+.+++.|..+|.|.+|.+.
T Consensus       458 knalrLVHvPS~TVFsNfP~~n------------------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  458 KNALRLVHVPSCTVFSNFPTSN------------------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ccceEEEeccceeeeccCCCCC------------------CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            5788888887765554443221                  112259999999999999999999999999875

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=3.5e-16  Score=159.52  Aligned_cols=166  Identities=19%  Similarity=0.293  Sum_probs=120.8

Q ss_pred             CEEEEEeCCCcEEEE--ECCCC--------------------eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           63 SLLISGSDDTHINVW--SYSSR--------------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        63 ~~lasgs~dg~V~vw--d~~~~--------------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      ..+++...+...++|  ++...                    ....++ ..|...|..++|.|.  ...|++|+.||+|+
T Consensus       243 ~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl-~s~~d~ir~l~~~~s--ep~lit~sed~~lk  319 (577)
T KOG0642|consen  243 SISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTL-RSHDDCIRALAFHPS--EPVLITASEDGTLK  319 (577)
T ss_pred             CccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeee-ecchhhhhhhhcCCC--CCeEEEeccccchh
Confidence            456667777777888  33211                    111123 468889999999998  58999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      +|++..  .........+++.++.+|.++|.|+++.+ +++.+++|+.||+|+.|++....-.       .+.    ++ 
T Consensus       320 ~WnLqk--~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp-------~ds----~d-  384 (577)
T KOG0642|consen  320 LWNLQK--AKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDP-------DDS----YD-  384 (577)
T ss_pred             hhhhcc--cCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCc-------ccc----cC-
Confidence            999943  22223344678999999999999999988 7789999999999999988733211       000    00 


Q ss_pred             cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~  250 (737)
                         .......+.+|+..++.+++++. .+.|++++.||++|.|+.....+
T Consensus       385 ---p~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  385 ---PSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             ---cchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcCc
Confidence               00112234578899999999997 57899999999999999876543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=5.2e-16  Score=149.01  Aligned_cols=251  Identities=17%  Similarity=0.180  Sum_probs=177.9

Q ss_pred             cccccccccccccccccceeecccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCc-cceEEEEE
Q 004685           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHS-ANVFCTKF  101 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~h~-~~V~~v~~  101 (737)
                      ..+.+++|+  -.+++....|++|...++.++|..  .+..+.+|+.||+|++||++.......+. ..+. .+..|++.
T Consensus        48 Sngsv~lyd--~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~  125 (376)
T KOG1188|consen   48 SNGSVRLYD--KGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL  125 (376)
T ss_pred             cCCeEEEEe--ccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec
Confidence            357788988  344788899999999999999987  45788999999999999999876555443 2333 46667666


Q ss_pred             eeCCCCCEEEEEEC----CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004685          102 VPETSDELVVSGAG----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (737)
Q Consensus       102 sp~~~~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl  177 (737)
                      +-.  +.++++|..    |-.|.+||++..+..        .-.....|.+.|+++.|+|.++++|++||.||-|.+||+
T Consensus       126 nck--~~ii~~GtE~~~s~A~v~lwDvR~~qq~--------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  126 NCK--KNIIACGTELTRSDASVVLWDVRSEQQL--------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             cCc--CCeEEeccccccCceEEEEEEeccccch--------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            645  578888754    678999999974421        123456799999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC
Q 004685          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (737)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~  257 (737)
                      .....-        +              .+...-.+...|.++.|.......+.+-+......+|+++.+.....+..+
T Consensus       196 ~~d~Ee--------D--------------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~  253 (376)
T KOG1188|consen  196 KKDNEE--------D--------------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENP  253 (376)
T ss_pred             CCCcch--------h--------------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCc
Confidence            876311        0              011111234568889999876567888899999999999888755444322


Q ss_pred             CC-------------------C---------CCCcc---ccc-----c-----ccccCCCCcccceeEEEEcCCCCEEEE
Q 004685          258 MS-------------------P---------PPCVN---YFC-----P-----MHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (737)
Q Consensus       258 ~~-------------------~---------~~~~~---~~~-----~-----~~~~~~~~~~~~i~~v~~sp~g~~l~~  296 (737)
                      ..                   +         ..+..   .|.     +     .....++++..-|+++.|...+..+++
T Consensus       254 ~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~T  333 (376)
T KOG1188|consen  254 DVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYT  333 (376)
T ss_pred             cchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeec
Confidence            00                   0         00000   000     0     000113333345788888888999999


Q ss_pred             EeCCCeEEEEEcCC
Q 004685          297 SYSGEHVYLMDVNH  310 (737)
Q Consensus       297 g~~dg~v~iwd~~~  310 (737)
                      |+.||.+.+|....
T Consensus       334 GGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  334 GGEDGLLQAWKVED  347 (376)
T ss_pred             cCCCceEEEEecCC
Confidence            99999999998643

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.70  E-value=6.3e-14  Score=152.24  Aligned_cols=208  Identities=28%  Similarity=0.449  Sum_probs=154.9

Q ss_pred             eecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEEccc-CccceEEEEE-eeCCCCC-EEEEEEC-CCcE
Q 004685           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETG-HSANVFCTKF-VPETSDE-LVVSGAG-DAEV  119 (737)
Q Consensus        45 ~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-~~~~~~~~-h~~~V~~v~~-sp~~~~~-~l~sgs~-dg~I  119 (737)
                      .+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+ .. +...+..+.+ +++  +. .++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL-EGLHDSSVSKLALSSPD--GNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEE-eccCCCceeeEEEECCC--cceEEeccCCCCccE
Confidence            466899999999999999999999999999999999886 66666 34 3347777777 666  45 5555444 9999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~  198 (737)
                      .+|+....         ......+..|...|..+.|+|. +..+++++. |+.+++|++.....                
T Consensus       137 ~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------  190 (466)
T COG2319         137 KLWDLSTP---------GKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGKP----------------  190 (466)
T ss_pred             EEEEecCC---------CeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCce----------------
Confidence            99999851         1225677889999999999994 457777775 99999999987432                


Q ss_pred             eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                               +.....|...+.+++|+|++...+++++.|+.|++||...+..+..                 .+  .+|.
T Consensus       191 ---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~-----------------~~--~~~~  242 (466)
T COG2319         191 ---------LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-----------------TL--SGHS  242 (466)
T ss_pred             ---------EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee-----------------ec--CCCC
Confidence                     2222236788999999987432555559999999998875443321                 00  2233


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      . .. -..|+|++.++++++.|+.+++|++...
T Consensus       243 ~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         243 D-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             c-ce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence            2 12 2289999988999999999999998874

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.69  E-value=1.1e-15  Score=145.52  Aligned_cols=239  Identities=16%  Similarity=0.179  Sum_probs=175.6

Q ss_pred             CceEEEEEc-------CCCCEEEEEeCCCcEEEEECCCCeEEEEEccc--Ccc---ceEEEEEeeCCCCCEEEEEECCCc
Q 004685           51 GCVNAISWN-------SKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSA---NVFCTKFVPETSDELVVSGAGDAE  118 (737)
Q Consensus        51 ~~V~~l~~s-------~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~--h~~---~V~~v~~sp~~~~~~l~sgs~dg~  118 (737)
                      +.|...+|-       |+..++|+.+.+.-|.+||..+|+....+ .+  |..   ...+++|+|+  |.+|++| ....
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~D--GeqlfaG-ykrc  180 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPD--GEQLFAG-YKRC  180 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccch-hhhhhHHhhhhheeEEecCC--CCeEeec-ccce
Confidence            467777775       56789999999999999999999987776 33  332   4578999999  7888766 5789


Q ss_pred             EEEEecCCCCCCCCCCCCCCCceee-----ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685          119 VRLFNLSRFSGRGLDDNAITPSALY-----QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (737)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~  193 (737)
                      |++||+..+...+       ++...     .+..+.|.+++|+|-+...++.++...++-++.-....+.          
T Consensus       181 irvFdt~RpGr~c-------~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----------  243 (406)
T KOG2919|consen  181 IRVFDTSRPGRDC-------PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----------  243 (406)
T ss_pred             EEEeeccCCCCCC-------cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----------
Confidence            9999996533322       12222     2347788999999988889999999999999887766533          


Q ss_pred             ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCcEEEEECCCCC-CcccccCCCCCCCCcccccccc
Q 004685          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMH  271 (737)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~  271 (737)
                                     ....+|.+.|+.++|.+++ +.|.+|. .|..|.+||+|... ++..+...              
T Consensus       244 ---------------~llggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh--------------  293 (406)
T KOG2919|consen  244 ---------------QLLGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERH--------------  293 (406)
T ss_pred             ---------------eeecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhh--------------
Confidence                           2233678999999999985 6666665 57899999999543 32222110              


Q ss_pred             ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-ceeeeecCCCCeeeeeccCCCCccCCCCCCC
Q 004685          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG-RAMRYTVGDASKIMSFTPTLNGLELQPPIHD  344 (737)
Q Consensus       272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  344 (737)
                         .+... .-.-....|++++|++|+.||.|++||+++... +.........++.++++|..+.++.......
T Consensus       294 ---v~~TN-QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~  363 (406)
T KOG2919|consen  294 ---VGDTN-QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRI  363 (406)
T ss_pred             ---ccCcc-ceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCcee
Confidence               01111 122356679999999999999999999999554 5566677899999999998877776655433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.68  E-value=1.3e-14  Score=160.03  Aligned_cols=225  Identities=18%  Similarity=0.162  Sum_probs=156.3

Q ss_pred             ccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-------eEEEEEcccCccceEEEEEeeCCCCCEE
Q 004685           39 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSDELV  110 (737)
Q Consensus        39 ~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~-------~~~~~~~~~h~~~V~~v~~sp~~~~~~l  110 (737)
                      ++..+.+|..|...|..++.++. +.+++||+.||+|++||..+.       +...++ ......+.++.+.+.  ++.+
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~--~~~~ 1113 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGN--GDQF 1113 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccC--CCeE
Confidence            45677788899999999999875 599999999999999998642       222333 234678899999998  7999


Q ss_pred             EEEECCCcEEEEecCCCCCCCCCCCCCCCcee--eccCCCceeEEEEecCCCc-EEEEEeCCCcEEEEEcCCCCCCCCCC
Q 004685          111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL--YQCHTRRVKKLAVEVGNPH-VVWSASEDGTLRQHDFRQGSSCPPAG  187 (737)
Q Consensus       111 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~p~~~~-~l~s~s~Dg~I~vwdl~~~~~~~~~~  187 (737)
                      |.++.||.|.+.++.........   ......  .+.....|...++...... .++.+..-+.|..||++.....    
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~---~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~---- 1186 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRV---ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA---- 1186 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccce---eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH----
Confidence            99999999999999863221100   000111  1111223333344433333 7778888899999999876422    


Q ss_pred             CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (737)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (737)
                                |         ........+.|++++.+|. +++++.|...|.+-+||+|-..++..+..+          
T Consensus      1187 ----------w---------~lk~~~~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~~P---------- 1236 (1431)
T KOG1240|consen 1187 ----------W---------RLKNQLRHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWEHP---------- 1236 (1431)
T ss_pred             ----------H---------hhhcCccccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeecccCc----------
Confidence                      1         1112233478999999997 589999999999999999988777665432          


Q ss_pred             ccccccCCCCcccceeEEEEcCCC---CEEEEEe--CCCeEEEEEcCCCCc
Q 004685          268 CPMHLSEHGRSSLHLTHVTFSPNG---EEVLLSY--SGEHVYLMDVNHAGG  313 (737)
Q Consensus       268 ~~~~~~~~~~~~~~i~~v~~sp~g---~~l~~g~--~dg~v~iwd~~~~~~  313 (737)
                               +. .+|+.+..+|..   ...++++  ..+.|.+|++.++.+
T Consensus      1237 ---------~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1237 ---------AR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             ---------cc-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence                     22 257777777633   4555444  478999999999753

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.67  E-value=3.6e-14  Score=152.65  Aligned_cols=206  Identities=18%  Similarity=0.157  Sum_probs=136.8

Q ss_pred             CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCcee
Q 004685           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK  151 (737)
Q Consensus        72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~  151 (737)
                      +.+.||++......... ..-...|.|++|+|.. +++++.|..+|.|.+||++.......    .........|..+++
T Consensus       222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~----s~ls~~~~sh~~~v~  295 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPP----SGLSALEVSHSEPVT  295 (555)
T ss_pred             ceEEEEecCCCCCceEE-EecCCceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCC----cccccccccCCcCeE
Confidence            47899999876222222 3467899999999987 89999999999999999997544210    111223446899999


Q ss_pred             EEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcE
Q 004685          152 KLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL  230 (737)
Q Consensus       152 ~l~~~p~~~-~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~  230 (737)
                      .+.|...-. .-+++++.||.|..|+++.-..+.........             ............+++++|.+.+++.
T Consensus       296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~-------------~~~~~~~~~~~~~t~~~F~~~~p~~  362 (555)
T KOG1587|consen  296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK-------------KHKGQQSSKAVGATSLKFEPTDPNH  362 (555)
T ss_pred             EEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc-------------cccccccccccceeeEeeccCCCce
Confidence            999976321 34779999999999988776543211111000             0011111234578999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          231 LLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       231 l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      |++|+.+|.|.-=+....+.-..           ..+.+  ...+..+.++|..+.++|-+..++..+.|-+|+||.-.
T Consensus       363 FiVGTe~G~v~~~~r~g~~~~~~-----------~~~~~--~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~  428 (555)
T KOG1587|consen  363 FIVGTEEGKVYKGCRKGYTPAPE-----------VSYKG--HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSED  428 (555)
T ss_pred             EEEEcCCcEEEEEeccCCccccc-----------ccccc--cccccccCcceEeeecCCCccceeeeeccceeEecccc
Confidence            99999999987744433321110           00000  00112233379999999988888888889999999765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.67  E-value=3.7e-13  Score=146.13  Aligned_cols=229  Identities=27%  Similarity=0.410  Sum_probs=167.4

Q ss_pred             cccccccccccccccccceeecccC-CceEEEEE-cCCCC-EEEEEeC-CCcEEEEECCC-CeEEEEEcccCccceEEEE
Q 004685           26 VNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISW-NSKGS-LLISGSD-DTHINVWSYSS-RKLLHSIETGHSANVFCTK  100 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~-s~~g~-~lasgs~-dg~V~vwd~~~-~~~~~~~~~~h~~~V~~v~  100 (737)
                      .+..+.+|+..... .....+.++. ..+..+.+ ++++. +++..+. |+.+.+|+... ......+ ..|...|.+++
T Consensus        85 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~  162 (466)
T COG2319          85 SDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLA  162 (466)
T ss_pred             CCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEE
Confidence            56778888843332 3556666644 37888888 88887 5555444 99999999998 6677777 78999999999


Q ss_pred             EeeCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685          101 FVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (737)
Q Consensus       101 ~sp~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~  179 (737)
                      |+|+  +..+++++. |+.+++|++...          ..+..+..|...|.+++|+|.+..++++++.|+.|++||...
T Consensus       163 ~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~  230 (466)
T COG2319         163 FSPD--GKLLASGSSLDGTIKLWDLRTG----------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST  230 (466)
T ss_pred             ECCC--CCEEEecCCCCCceEEEEcCCC----------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence            9999  578888875 999999999862          236677779999999999985443666669999999998774


Q ss_pred             CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC-cccccCCC
Q 004685          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRM  258 (737)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~-~~~~~~~~  258 (737)
                      +.....                        ....|.... ...|+|++ ..+++++.|+.+++|+++.... +..+    
T Consensus       231 ~~~~~~------------------------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~----  280 (466)
T COG2319         231 GKLLRS------------------------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTL----  280 (466)
T ss_pred             CcEEee------------------------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEE----
Confidence            432100                        122233332 22788875 7888999999999999986553 1110    


Q ss_pred             CCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcce
Q 004685          259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  315 (737)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~  315 (737)
                                      .+| ...+.++.|+|++..+++++.|+.+.+|+..+.....
T Consensus       281 ----------------~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  320 (466)
T COG2319         281 ----------------SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS  320 (466)
T ss_pred             ----------------ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence                            112 2259999999999999998889899999888765433

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=3.7e-15  Score=152.67  Aligned_cols=185  Identities=14%  Similarity=0.120  Sum_probs=120.9

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      .+|++.|.||...|.  |..|++|+.||+|+||.+.++.  |        +..+. ..+.|.||+|+|.....++.....
T Consensus       397 rGHtg~Vr~iSvdp~--G~wlasGsdDGtvriWEi~TgR--c--------vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~  463 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPS--GEWLASGSDDGTVRIWEIATGR--C--------VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG  463 (733)
T ss_pred             eccCCeEEEEEecCC--cceeeecCCCCcEEEEEeecce--E--------EEEEe-ecceeEEEEecCCCCceeEEEEec
Confidence            799999999999997  8999999999999999999743  2        55554 456899999999655555555555


Q ss_pred             CcEEEEEcCCCCCCCC------CCC----CCCccceEEEeccCC--ceeeccCCCCCccceEEEEEecCCCcEEEEEeCC
Q 004685          170 GTLRQHDFRQGSSCPP------AGS----SHQECRNILLDLRCG--AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD  237 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~------~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D  237 (737)
                      ..+.+.+-.-+..+..      ...    .........|.-...  ....+...-.|...|..+.|+.. |.+|++...+
T Consensus       464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~~~  542 (733)
T KOG0650|consen  464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVMPD  542 (733)
T ss_pred             CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEeccC
Confidence            5577766544422100      000    001111122221100  00012222346678899999996 6899988654


Q ss_pred             ---CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          238 ---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       238 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                         ..|.|.++.......-+                     ....+.|.++.|+|...+|++++.. .|+|||+..
T Consensus       543 ~~~~~VliHQLSK~~sQ~PF---------------------~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~k  596 (733)
T KOG0650|consen  543 SGNKSVLIHQLSKRKSQSPF---------------------RKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSK  596 (733)
T ss_pred             CCcceEEEEecccccccCch---------------------hhcCCceeEEEecCCCceEEEEecc-ceEEEehhH
Confidence               56888888654322111                     0122258999999999999999876 899999876

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.66  E-value=1.3e-14  Score=150.07  Aligned_cols=176  Identities=18%  Similarity=0.324  Sum_probs=133.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~  131 (737)
                      .|..++|-|||..|+.+.. ..+.|||...|..+.++ ++|++.|.|++|+.+  |.++++|+.|..|.+|..... +  
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtL-KgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klE-G--   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLE-G--   86 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCccccccc-ccccceEEEEEEccC--CceeccCCCceeEEEeccccc-c--
Confidence            8999999999987776654 48999999999999999 899999999999999  899999999999999987641 1  


Q ss_pred             CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004685          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (737)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (737)
                              +.. ..|.+.|.|+.|+| -.+.|++|+.. ..-+|........                          . 
T Consensus        87 --------~Lk-YSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V~--------------------------K-  128 (1081)
T KOG1538|consen   87 --------ILK-YSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSVS--------------------------K-  128 (1081)
T ss_pred             --------eee-eccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhHH--------------------------h-
Confidence                    222 35999999999999 44788888764 4677876543311                          0 


Q ss_pred             CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC
Q 004685          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (737)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g  291 (737)
                      ......+.+++|..+ |++++.|-.||+|.+-+......+ .+.                  ..|....+|.+++|+|..
T Consensus       129 ~kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~gEek~-~I~------------------Rpgg~Nspiwsi~~~p~s  188 (1081)
T KOG1538|consen  129 HKSSSRIICCSWTND-GQYLALGMFNGTISIRNKNGEEKV-KIE------------------RPGGSNSPIWSICWNPSS  188 (1081)
T ss_pred             hhhheeEEEeeecCC-CcEEEEeccCceEEeecCCCCcce-EEe------------------CCCCCCCCceEEEecCCC
Confidence            011346789999987 699999999999998855422211 111                  122334479999999964


Q ss_pred             C
Q 004685          292 E  292 (737)
Q Consensus       292 ~  292 (737)
                      .
T Consensus       189 g  189 (1081)
T KOG1538|consen  189 G  189 (1081)
T ss_pred             C
Confidence            3

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.66  E-value=2e-13  Score=143.63  Aligned_cols=196  Identities=14%  Similarity=0.142  Sum_probs=120.4

Q ss_pred             EEEEeCCCcEEEEECCC-Ce--EEEEEcccCccceEEEEEeeCCCCCEEEEE-ECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685           65 LISGSDDTHINVWSYSS-RK--LLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPS  140 (737)
Q Consensus        65 lasgs~dg~V~vwd~~~-~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (737)
                      +++...++.|.+||+.+ ++  .+..+ . +......++++|+  +++|+++ ..++.|.+|++.. .+..      ...
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~-~-~~~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~-~g~l------~~~   73 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVV-D-VPGQVQPMVISPD--KRHLYVGVRPEFRVLSYRIAD-DGAL------TFA   73 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEE-e-cCCCCccEEECCC--CCEEEEEECCCCcEEEEEECC-CCce------EEe
Confidence            34457789999999964 33  44444 2 3456788999999  6777655 4588999999972 2211      111


Q ss_pred             eeeccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceE
Q 004685          141 ALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  219 (737)
Q Consensus       141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (737)
                      ... ........++|+|++ +++++++ .++.|.+|++.+......          .           +... .+.....
T Consensus        74 ~~~-~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~----------~-----------~~~~-~~~~~~~  129 (330)
T PRK11028         74 AES-PLPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVA----------P-----------IQII-EGLEGCH  129 (330)
T ss_pred             eee-cCCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCC----------c-----------eeec-cCCCccc
Confidence            111 123346789999955 5555554 589999999974321100          0           0000 0112356


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC
Q 004685          220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (737)
Q Consensus       220 ~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~  299 (737)
                      +++++|++..++++...++.|.+||+.....+.....        ...   ..    ..+.....++|+|+|++++++..
T Consensus       130 ~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~--------~~~---~~----~~g~~p~~~~~~pdg~~lyv~~~  194 (330)
T PRK11028        130 SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP--------AEV---TT----VEGAGPRHMVFHPNQQYAYCVNE  194 (330)
T ss_pred             EeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC--------Cce---ec----CCCCCCceEEECCCCCEEEEEec
Confidence            7889997544445666779999999976332211000        000   00    00112567899999999999887


Q ss_pred             -CCeEEEEEcCC
Q 004685          300 -GEHVYLMDVNH  310 (737)
Q Consensus       300 -dg~v~iwd~~~  310 (737)
                       ++.|.+|++..
T Consensus       195 ~~~~v~v~~~~~  206 (330)
T PRK11028        195 LNSSVDVWQLKD  206 (330)
T ss_pred             CCCEEEEEEEeC
Confidence             89999999975

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=2e-14  Score=156.23  Aligned_cols=222  Identities=16%  Similarity=0.264  Sum_probs=146.8

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc--CccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~  125 (737)
                      +..++-..+.|+|-...++++...-.|+|||.+.++.+..|..+  ....|+.+.+-...+..++++|+.||.|+||+--
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            33445677889998888999987789999999999988877322  2467899998876557799999999999999865


Q ss_pred             CCC-CCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685          126 RFS-GRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (737)
Q Consensus       126 ~~~-~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (737)
                      ... ....-...+..+..+. +-.+.-.-+.|....+.++ +++.-+.|++||.......              .++.. 
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~~--------------~diP~- 1205 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQVV--------------ADIPY- 1205 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEecccceeE--------------eeccc-
Confidence            322 1110000011111111 1111114467777665555 5555789999998876532              22111 


Q ss_pred             ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (737)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (737)
                               +....++++.-+-..++.+++|..||.|++||.|...+-..          +..     ...+.... +|.
T Consensus      1206 ---------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~----------v~~-----~R~h~~~~-~Iv 1260 (1387)
T KOG1517|consen 1206 ---------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL----------VCV-----YREHNDVE-PIV 1260 (1387)
T ss_pred             ---------CCCccceeecccccCCceEEEeecCCceEEeecccCCcccc----------cee-----ecccCCcc-cce
Confidence                     12345666666655678999999999999999997543211          111     11111111 388


Q ss_pred             EEEEcCCCCE-EEEEeCCCeEEEEEcCC
Q 004685          284 HVTFSPNGEE-VLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       284 ~v~~sp~g~~-l~~g~~dg~v~iwd~~~  310 (737)
                      .+.+.+.|-. |++|+.+|.|++||++.
T Consensus      1261 ~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             eEEeecCCCcceeeeccCCeEEEEeccc
Confidence            9999987655 99999999999999998

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.63  E-value=1.4e-14  Score=149.82  Aligned_cols=224  Identities=14%  Similarity=0.193  Sum_probs=160.1

Q ss_pred             ccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--------EEEEEc---------
Q 004685           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--------LLHSIE---------   89 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--------~~~~~~---------   89 (737)
                      ..++-+||  ...+.++.+|+||++.|+|++|+.||+++|+|+.|+.|.+|+-.-..        .++.+.         
T Consensus        32 g~rlliyD--~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~La  109 (1081)
T KOG1538|consen   32 GSRLLVYD--TSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLA  109 (1081)
T ss_pred             CCEEEEEe--CCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhh
Confidence            35667777  67788999999999999999999999999999999999999854211        111110         


Q ss_pred             -------------------ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCce
Q 004685           90 -------------------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV  150 (737)
Q Consensus        90 -------------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v  150 (737)
                                         ......|.+++|..+  |++|+-|-.||+|.|-+-.....        -.+..-.+..++|
T Consensus       110 sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnD--GqylalG~~nGTIsiRNk~gEek--------~~I~Rpgg~Nspi  179 (1081)
T KOG1538|consen  110 SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTND--GQYLALGMFNGTISIRNKNGEEK--------VKIERPGGSNSPI  179 (1081)
T ss_pred             hcchhhccccChhhhhHHhhhhheeEEEeeecCC--CcEEEEeccCceEEeecCCCCcc--------eEEeCCCCCCCCc
Confidence                               012345666777777  79999999999998875432111        0122233567899


Q ss_pred             eEEEEecCCC----cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004685          151 KKLAVEVGNP----HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (737)
Q Consensus       151 ~~l~~~p~~~----~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (737)
                      .+++|+|..+    .++++.....++.++.+.....                          .....-.....|+++.++
T Consensus       180 wsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I--------------------------gk~r~L~FdP~CisYf~N  233 (1081)
T KOG1538|consen  180 WSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI--------------------------GKDRALNFDPCCISYFTN  233 (1081)
T ss_pred             eEEEecCCCCCCccceEEEEeccceeEEEEecceee--------------------------cccccCCCCchhheeccC
Confidence            9999998543    4677777778888887765431                          111112234568888896


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004685          227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (737)
Q Consensus       227 ~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iw  306 (737)
                       |.+++.|+.|+.+++|-.. +-.+.+                     -+....+|+.++..|++++++.|+.||+|-.|
T Consensus       234 -GEy~LiGGsdk~L~~fTR~-GvrLGT---------------------vg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy  290 (1081)
T KOG1538|consen  234 -GEYILLGGSDKQLSLFTRD-GVRLGT---------------------VGEQDSWIWTVQAKPNSQYVVVGCQDGTIACY  290 (1081)
T ss_pred             -CcEEEEccCCCceEEEeec-CeEEee---------------------ccccceeEEEEEEccCCceEEEEEccCeeehh
Confidence             6899999999999999544 221111                     22334489999999999999999999999999


Q ss_pred             EcCCC
Q 004685          307 DVNHA  311 (737)
Q Consensus       307 d~~~~  311 (737)
                      ++-..
T Consensus       291 Nl~fS  295 (1081)
T KOG1538|consen  291 NLIFS  295 (1081)
T ss_pred             hhHHh
Confidence            98764

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.63  E-value=1.3e-14  Score=142.40  Aligned_cols=258  Identities=18%  Similarity=0.259  Sum_probs=173.5

Q ss_pred             cCCCCCcccccccccccccc-------cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--------C---
Q 004685           20 TDTRPDVNHSLQMHSSLVRR-------LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--------S---   81 (737)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~--------~---   81 (737)
                      ...+.+.++.+++|......       .+..-.|..|+.+|+++.|+|+|++||+|+.+|.|.+|-..        +   
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~  107 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD  107 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence            56788899999999843322       23345678899999999999999999999999999999765        2   


Q ss_pred             -----CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEe
Q 004685           82 -----RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  156 (737)
Q Consensus        82 -----~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  156 (737)
                           ....+.+ .+|...|..++|+|+  +.++++++.|..+++||+..+.          ....+..|...+..++|.
T Consensus       108 ~~ke~w~v~k~l-r~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G~----------l~~~~~dh~~yvqgvawD  174 (434)
T KOG1009|consen  108 LNKEKWVVKKVL-RGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAGQ----------LLAILDDHEHYVQGVAWD  174 (434)
T ss_pred             hCccceEEEEEe-cccccchhhhhccCC--CceeeeeeccceEEEEEeccce----------eEeeccccccccceeecc
Confidence                 1223334 789999999999999  6999999999999999999743          267788999999999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCC--------CCC------------------------CccceEE-------
Q 004685          157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAG--------SSH------------------------QECRNIL-------  197 (737)
Q Consensus       157 p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~--------~~~------------------------~~~~~~~-------  197 (737)
                      | -.+++++-+.|...+.+.+.....+....        ..+                        .++...+       
T Consensus       175 p-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~  253 (434)
T KOG1009|consen  175 P-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFK  253 (434)
T ss_pred             h-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceee
Confidence            9 55788888888866666654433220000        000                        0000000       


Q ss_pred             ----------EeccC-CceeeccCCCCCccceEEEEEecC-----------------CCcEEEEEeCCCcEEEEECCCCC
Q 004685          198 ----------LDLRC-GAKRSLADPPKQTLSLKSCDISST-----------------RPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       198 ----------~~~~~-~~~~~~~~~~~~~~~v~~i~~sp~-----------------~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                                +.+.. .-.+.+...+........+.|+|-                 -...+|+++ ...+.+||.++..
T Consensus       254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~  332 (434)
T KOG1009|consen  254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLE  332 (434)
T ss_pred             eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEecccccc
Confidence                      00000 000111122222333344444331                 112345554 4678999998876


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      ++....                   +-|-. .|+.++|+++|..|+..+.||...+..+...+
T Consensus       333 P~~~v~-------------------nihy~-~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  333 PLAVVD-------------------NIHYS-AITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             ceEEEe-------------------eeeee-eecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence            654432                   11222 59999999999999999999988887777643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.63  E-value=4.1e-15  Score=139.50  Aligned_cols=187  Identities=17%  Similarity=0.194  Sum_probs=145.2

Q ss_pred             cCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685           49 HQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (737)
Q Consensus        49 H~~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~  126 (737)
                      |+...++-+|+|  +|+.+++.+ |+++..||+++.++...+..+|...|..+.|+|+. ..+|++|+.||.|+|||.+.
T Consensus       169 ~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~  246 (370)
T KOG1007|consen  169 MRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRK  246 (370)
T ss_pred             ccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccC
Confidence            566788889998  788888765 68999999999998888888999999999999996 66899999999999999996


Q ss_pred             CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC---
Q 004685          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG---  203 (737)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~---  203 (737)
                      ..         .|+..+.+|...|.++.|+|...+++++++.|..|.+|....-.....+...+......-.+....   
T Consensus       247 tk---------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp  317 (370)
T KOG1007|consen  247 TK---------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP  317 (370)
T ss_pred             CC---------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence            43         468899999999999999999889999999999999998765442222221111110000000000   


Q ss_pred             -ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004685          204 -AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (737)
Q Consensus       204 -~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~  246 (737)
                       ....+.++..|+..|++++|+.-++-.||+-+.||++.|=.+.
T Consensus       318 L~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  318 LQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence             0123456678999999999999889899999999999876554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.63  E-value=3.7e-15  Score=145.50  Aligned_cols=179  Identities=20%  Similarity=0.233  Sum_probs=143.9

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      .+|+++|..++|+|.. ...+++|+.|.+|.||.+......   ..-.+|+..+.+|...|.-++|+|.-.+.|++++.|
T Consensus        78 ~GHt~~vLDi~w~Pfn-D~vIASgSeD~~v~vW~IPe~~l~---~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFN-DCVIASGSEDTKVMVWQIPENGLT---RDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             cCccccccccccCccC-CceeecCCCCceEEEEECCCcccc---cCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            6899999999999986 789999999999999999753221   122367889999999999999999888999999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      .+|.+||+.+++..                        + .. .|...|++++|+.+ +.+|++.+.|..|||||.++++
T Consensus       154 n~v~iWnv~tgeal------------------------i-~l-~hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  154 NTVSIWNVGTGEAL------------------------I-TL-DHPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             ceEEEEeccCCcee------------------------e-ec-CCCCeEEEEEeccC-CceeeeecccceeEEEcCCCCc
Confidence            99999999998732                        1 11 27889999999997 6899999999999999999988


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCcceeeee
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYT  319 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~---dg~v~iwd~~~~~~~~~~~~  319 (737)
                      .+.+-                    .+|.+..-..+.|-.+|..+-+|..   +..+-+||..+...+..+..
T Consensus       207 ~v~e~--------------------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e  259 (472)
T KOG0303|consen  207 VVSEG--------------------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE  259 (472)
T ss_pred             Eeeec--------------------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEE
Confidence            66543                    2344445667789999995555544   67899999988776544443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.63  E-value=7.2e-14  Score=133.33  Aligned_cols=227  Identities=15%  Similarity=0.194  Sum_probs=170.7

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~  125 (737)
                      -.++|+|.+|++|+..+|.+.....|.||.....+   ..+++ ..|...|++|.|+|.  .+.|++|+.|..-++|...
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecCC--CCceeEccCCCCccccccC
Confidence            45799999999999999999999999999987654   56677 789999999999999  5899999999999999885


Q ss_pred             CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                      ..       .++++...+..+...++++.|+| ..+.|++|+.-+.|.+|-++....              -|.      
T Consensus        86 ~~-------~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENd--------------WWV------  137 (361)
T KOG1523|consen   86 SG-------GTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQEND--------------WWV------  137 (361)
T ss_pred             CC-------CeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccc--------------eeh------
Confidence            31       22567778888999999999999 779999999999999998775431              000      


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccc-cCCCCcccceeE
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-SEHGRSSLHLTH  284 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~  284 (737)
                       .....+.....|++++|+|+ +-++++|+.|+.+|+|..-    ++.+..+..+..--..+.-..+ .+....++++..
T Consensus       138 -sKhikkPirStv~sldWhpn-nVLlaaGs~D~k~rVfSay----IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~  211 (361)
T KOG1523|consen  138 -SKHIKKPIRSTVTSLDWHPN-NVLLAAGSTDGKCRVFSAY----IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHG  211 (361)
T ss_pred             -hhhhCCccccceeeeeccCC-cceecccccCcceeEEEEe----eeccccCCCCCCCccCCcHHHHHHhhccCCCceee
Confidence             00111234567899999997 5799999999999999753    1111111111111111111111 112245568999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          285 VTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       285 v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      +.|+|+|..|+-.+.|..|.+-|...+.
T Consensus       212 v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  212 VLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             eEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            9999999999999999999999988765

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.62  E-value=4.3e-14  Score=152.06  Aligned_cols=237  Identities=17%  Similarity=0.156  Sum_probs=171.4

Q ss_pred             ccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE-----EEEEcccCccceEEEEEe
Q 004685           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFV  102 (737)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~-----~~~~~~~h~~~V~~v~~s  102 (737)
                      .+-+|+..-. ..+...+. -...|+|++|+| +..+||.|..+|+|.+||+..+..     +......|..+|+.+.|.
T Consensus       223 ~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  223 VLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             eEEEEecCCC-CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            4666763322 56666665 356899999999 678999999999999999987654     222225689999999999


Q ss_pred             eCCCCCEEEEEECCCcEEEEecCCCCCCCC----C-----------------------------------------C---
Q 004685          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGL----D-----------------------------------------D---  134 (737)
Q Consensus       103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~----~-----------------------------------------~---  134 (737)
                      .+..+.-|++++.||.|+.|+++.......    +                                         .   
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            875344599999999999999875222100    0                                         0   


Q ss_pred             -----CCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685          135 -----NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (737)
Q Consensus       135 -----~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (737)
                           ..+++...+..|.++|+++.++|-...++.+++ |.++++|.......+                        +.
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~P------------------------l~  435 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASP------------------------LL  435 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCc------------------------ch
Confidence                 001223345567889999999998777777777 999999997733211                        23


Q ss_pred             CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004685          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (737)
Q Consensus       210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  289 (737)
                      ....+...+++++|||..+..|+++..||.|.+||+...........         ..         + ....+.+.|++
T Consensus       436 ~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~---------~~---------~-~~~l~~~~~s~  496 (555)
T KOG1587|consen  436 SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ---------KV---------C-SPALTRVRWSP  496 (555)
T ss_pred             hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc---------cc---------c-ccccceeecCC
Confidence            33344566999999999999999999999999999985542211110         00         1 22467788999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCC
Q 004685          290 NGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       290 ~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +|+.|++|...|.+.+|++...
T Consensus       497 ~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  497 NGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             CCcEEEEecCCCcEEEEEcCch
Confidence            9999999999999999999763

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.61  E-value=1.6e-15  Score=160.70  Aligned_cols=159  Identities=20%  Similarity=0.326  Sum_probs=119.5

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      .+|-..|.|+.|...  |.++++|+.|..++||.+.+.          .++....+|.+.|+.++.+. +..++++++.|
T Consensus       187 lgH~naVyca~fDrt--g~~Iitgsdd~lvKiwS~et~----------~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D  253 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRT--GRYIITGSDDRLVKIWSMETA----------RCLASCRGHSGDITDLAVSS-NNTMIAAASND  253 (1113)
T ss_pred             Hhhhhheeeeeeccc--cceEeecCccceeeeeeccch----------hhhccCCCCccccchhccch-hhhhhhhcccC
Confidence            589999999999988  899999999999999997752          33788999999999999987 55789999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      ..|++|.+..+.++                         .-..+|++.|++++|+|-.     +.+.||++++||.+- .
T Consensus       254 ~vIrvWrl~~~~pv-------------------------svLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~-~  302 (1113)
T KOG0644|consen  254 KVIRVWRLPDGAPV-------------------------SVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARL-E  302 (1113)
T ss_pred             ceEEEEecCCCchH-------------------------HHHhccccceeeeccCccc-----cCCCCCceEeccccc-c
Confidence            99999999998743                         3345789999999999952     678899999999982 2


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~  308 (737)
                      ++...              |-.+...+.  .-+-++.|..++..+++++.|+....|.+
T Consensus       303 ~~~y~--------------prp~~~~~~--~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~  345 (1113)
T KOG0644|consen  303 PRIYV--------------PRPLKFTEK--DLVDSILFENNGDRFLTGSRDGEARNHEF  345 (1113)
T ss_pred             ccccC--------------CCCCCcccc--cceeeeeccccccccccccCCcccccchh
Confidence            11111              111111111  13556667667777777777665555543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.59  E-value=9.2e-15  Score=147.77  Aligned_cols=195  Identities=17%  Similarity=0.314  Sum_probs=147.2

Q ss_pred             cccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685           36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (737)
Q Consensus        36 ~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  115 (737)
                      +.+..+..+.+.+|.++|.|-.|+|||.-|+|++.||.|++|.- +|....++ .....+|.|++|.|++ .+.+.+.+ 
T Consensus        90 l~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl-~Q~~~~v~c~~W~p~S-~~vl~c~g-  165 (737)
T KOG1524|consen   90 LNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV-VQNEESIRCARWAPNS-NSIVFCQG-  165 (737)
T ss_pred             ecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHH-hhcCceeEEEEECCCC-CceEEecC-
Confidence            34556777888999999999999999999999999999999994 44444444 3467899999999996 44554443 


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                       +.+.|=-+...          ..+-..+.|.+-|.++.|++ ..+++++|+.|-..++||-....              
T Consensus       166 -~h~~IKpL~~n----------~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~--------------  219 (737)
T KOG1524|consen  166 -GHISIKPLAAN----------SKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGAN--------------  219 (737)
T ss_pred             -CeEEEeecccc----------cceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcc--------------
Confidence             34555444431          12456788999999999999 55899999999999999965432              


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                                  +.....|+.+|++++|+|+  ..++.++. .++|+=..+.                            
T Consensus       220 ------------Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R~~~p~~----------------------------  256 (737)
T KOG1524|consen  220 ------------LFTSAAEEYAITSVAFNPE--KDYLLWSY-NTARFSSPRV----------------------------  256 (737)
T ss_pred             ------------cccCChhccceeeeeeccc--cceeeeee-eeeeecCCCc----------------------------
Confidence                        3344567889999999996  57777775 4455222221                            


Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004685          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD  307 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd  307 (737)
                          +.|..++||+||..++.|+..|.|.+=-
T Consensus       257 ----GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  257 ----GSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             ----cceEEEEEcCCCceeeccccCceEEEee
Confidence                2499999999999999999988776543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.58  E-value=7.6e-14  Score=133.28  Aligned_cols=209  Identities=11%  Similarity=0.087  Sum_probs=135.6

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC
Q 004685           56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  135 (737)
Q Consensus        56 l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  135 (737)
                      .+|||+|+++|+++.- .+.|-|.++-+..+.|  .--..|..+.|..++ ..+|.....|+.|.+|++.+.+-      
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--~cldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qpew------   83 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--LCLDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQPEW------   83 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHH--HHHHHhhheeeeccc-eeeeeeeeccceEEEEEeeccee------
Confidence            5799999999999875 8888898887765554  234678889999885 55667778899999999986432      


Q ss_pred             CCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC--------CCCCCCccceEEEeccCCc---
Q 004685          136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP--------AGSSHQECRNILLDLRCGA---  204 (737)
Q Consensus       136 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~--------~~~~~~~~~~~~~~~~~~~---  204 (737)
                          ...+......+.++.|+|++.++|.+...|-+|.+|.+.+.+....        ...-+.+....-+-.+..-   
T Consensus        84 ----~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy  159 (447)
T KOG4497|consen   84 ----YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDY  159 (447)
T ss_pred             ----EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHH
Confidence                3456667788999999998878999999999999999988753210        0011111111110000000   


Q ss_pred             --------eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004685          205 --------KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (737)
Q Consensus       205 --------~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (737)
                              -..+..+...+...+++.|+|+ ++.||         +||---.-.+.                      .-
T Consensus       160 v~i~~c~~W~ll~~f~~dT~DltgieWsPd-g~~la---------Vwd~~Leykv~----------------------aY  207 (447)
T KOG4497|consen  160 VQISSCKAWILLKEFKLDTIDLTGIEWSPD-GNWLA---------VWDNVLEYKVY----------------------AY  207 (447)
T ss_pred             HHHHhhHHHHHHHhcCCCcccccCceECCC-CcEEE---------Eecchhhheee----------------------ee
Confidence                    0001122233445566777775 34444         34322110000                      00


Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +.+..+..++|+|.+++|++|+.|+++++.|--+
T Consensus       208 e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t  241 (447)
T KOG4497|consen  208 ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT  241 (447)
T ss_pred             eeccceeEEEeccccceEEeeccchhhhhhceee
Confidence            2222488999999999999999999999976554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.55  E-value=4.6e-14  Score=145.24  Aligned_cols=203  Identities=15%  Similarity=0.190  Sum_probs=154.3

Q ss_pred             EcCCCCEEEE--EeCCCcEEEEECCCC-e----EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           58 WNSKGSLLIS--GSDDTHINVWSYSSR-K----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        58 ~s~~g~~las--gs~dg~V~vwd~~~~-~----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      |+.+.+++|.  .+.-|.|-||++..- +    .+..+  .....|+++.|.|-. ...|+.++.||.|+||.+..+...
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l--~Ngt~vtDl~WdPFD-~~rLAVa~ddg~i~lWr~~a~gl~  663 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL--FNGTLVTDLHWDPFD-DERLAVATDDGQINLWRLTANGLP  663 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc--ccCceeeecccCCCC-hHHeeecccCceEEEEEeccCCCC
Confidence            4445556553  455689999999752 2    22233  246789999999975 789999999999999999864332


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (737)
                         .+...+...+..|...|+++.|+|-..++|+++++|-+|++||+++.+.                         ...
T Consensus       664 ---e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-------------------------~~~  715 (1012)
T KOG1445|consen  664 ---ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-------------------------YSR  715 (1012)
T ss_pred             ---cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-------------------------hhe
Confidence               2345667888999999999999998888999999999999999998762                         334


Q ss_pred             CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC-cccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004685          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (737)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  289 (737)
                      +.+|...|.+++|+|+ ++.+|+.+.||+|++|..++... +.+                    +.+..+..-..+.|--
T Consensus       716 l~gHtdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e~pv~E--------------------g~gpvgtRgARi~wac  774 (1012)
T KOG1445|consen  716 LVGHTDQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSREQPVYE--------------------GKGPVGTRGARILWAC  774 (1012)
T ss_pred             eccCcCceeEEEECCC-CcceeeeecCceEEEeCCCCCCCcccc--------------------CCCCccCcceeEEEEe
Confidence            5578999999999997 69999999999999999987641 111                    0111112234577888


Q ss_pred             CCCEEEEEeCCC----eEEEEEcCCCC
Q 004685          290 NGEEVLLSYSGE----HVYLMDVNHAG  312 (737)
Q Consensus       290 ~g~~l~~g~~dg----~v~iwd~~~~~  312 (737)
                      +|+++++.+.|.    .|.+||.++..
T Consensus       775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  775 DGRIVIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             cCcEEEEecccccchhhhhhhhhhhcc
Confidence            999999888864    67888877743

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.53  E-value=3.2e-13  Score=125.43  Aligned_cols=248  Identities=14%  Similarity=0.138  Sum_probs=170.1

Q ss_pred             hhhccccCCCCCcccccccccccccccccceeec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--Ec-
Q 004685           14 MLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS--IE-   89 (737)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~--~~-   89 (737)
                      .-+..+..-+...-+-+.+|..  ++......++ .|...|+.+.--|+ ..|.+=+.|+.+.+|++..+..+..  +. 
T Consensus        21 ~fqa~~rL~sg~~~G~V~~w~l--qt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~   97 (323)
T KOG0322|consen   21 LFQANERLMSGLSVGIVKMWVL--QTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVV   97 (323)
T ss_pred             hhccchhhhcccccceEEEEEe--ecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeec
Confidence            3344455556677788999994  4445556666 47789999998887 5688888999999999875322111  00 


Q ss_pred             -------------------------------------------------ccCccceEEEEEeeCCCCC-EEEEEECCCcE
Q 004685           90 -------------------------------------------------TGHSANVFCTKFVPETSDE-LVVSGAGDAEV  119 (737)
Q Consensus        90 -------------------------------------------------~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I  119 (737)
                                                                       .+..+.+.|..|....... +++.|-.+|.+
T Consensus        98 nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghv  177 (323)
T KOG0322|consen   98 NSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHV  177 (323)
T ss_pred             cccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeE
Confidence                                                             1223445565544432122 45777789999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      .+||+...+....-....+.......|..+|.++.+.+.- ..=++|+.+..+..|.+......-.+        .....
T Consensus       178 v~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~--------~~e~~  248 (323)
T KOG0322|consen  178 VIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQI--------RKEIT  248 (323)
T ss_pred             EEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccc--------cceEE
Confidence            9999997533222122223344556799999999998743 44557888889999998765311000        00000


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                                   ...-.+..+.+-|+ ++.+||++.|++||||..++++++..+.                    -|..
T Consensus       249 -------------lknpGv~gvrIRpD-~KIlATAGWD~RiRVyswrtl~pLAVLk--------------------yHsa  294 (323)
T KOG0322|consen  249 -------------LKNPGVSGVRIRPD-GKILATAGWDHRIRVYSWRTLNPLAVLK--------------------YHSA  294 (323)
T ss_pred             -------------ecCCCccceEEccC-CcEEeecccCCcEEEEEeccCCchhhhh--------------------hhhc
Confidence                         11234667778887 5899999999999999999999876653                    2443


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~  308 (737)
                       .|++++|+|+...+++++.|+.|.+|++
T Consensus       295 -gvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  295 -GVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             -ceeEEEeCCCCchhhhccCCceEEeeec
Confidence             6999999999999999999999999986

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=7e-13  Score=144.41  Aligned_cols=264  Identities=14%  Similarity=0.225  Sum_probs=181.4

Q ss_pred             CCCCCChhhhhhhccccCC----CCCcccccccccccccc---cccceeec---ccC----CceEEEEEcCCCCEEEEEe
Q 004685            4 FPFHDGSIYDMLDTRHTDT----RPDVNHSLQMHSSLVRR---LSQERELE---GHQ----GCVNAISWNSKGSLLISGS   69 (737)
Q Consensus         4 ~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~l~---~H~----~~V~~l~~s~~g~~lasgs   69 (737)
                      ..|-...+.++-..++.+.    ..+.++.|++|+.+...   .+.+..+.   ++.    +.=.-+.|..+..+|++++
T Consensus      1105 ~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1105 GAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred             CCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC
Confidence            3344555556555555543    47889999999977664   33333333   221    1112356776544555555


Q ss_pred             CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004685           70 DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (737)
Q Consensus        70 ~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (737)
                      .-..|+|||..+.++...+..+....|+++.-+-.. |++++.|..||.|++||.+.....       ..+...+.|+..
T Consensus      1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~d-------s~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPD-------SLVCVYREHNDV 1256 (1387)
T ss_pred             CeeEEEEEecccceeEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCcc-------ccceeecccCCc
Confidence            568999999999988888866667778888766665 799999999999999999865432       236677788887


Q ss_pred             --eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC
Q 004685          150 --VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (737)
Q Consensus       150 --v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  227 (737)
                        |..+.+.+.+-..|++|+.||.|++||++......            +.        .+.........++++..++. 
T Consensus      1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~------------~~--------~iv~~~~yGs~lTal~VH~h- 1315 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET------------FL--------TIVAHWEYGSALTALTVHEH- 1315 (1387)
T ss_pred             ccceeEEeecCCCcceeeeccCCeEEEEecccCcccc------------cc--------eeeeccccCccceeeeeccC-
Confidence              99999988555568999999999999999852110            00        00000011124889999987 


Q ss_pred             CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004685          228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD  307 (737)
Q Consensus       228 ~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd  307 (737)
                      ...+|+|+. +.|+||++...+ +..+..           .+..   -+...+.+.|++|||.--.+++|+.|..|.||.
T Consensus      1316 apiiAsGs~-q~ikIy~~~G~~-l~~~k~-----------n~~F---~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1316 APIIASGSA-QLIKIYSLSGEQ-LNIIKY-----------NPGF---MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             CCeeeecCc-ceEEEEecChhh-hccccc-----------Cccc---ccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence            579999988 999999997433 322210           0111   122333589999999999999999999999998


Q ss_pred             cCCCC
Q 004685          308 VNHAG  312 (737)
Q Consensus       308 ~~~~~  312 (737)
                      .....
T Consensus      1380 ~~k~~ 1384 (1387)
T KOG1517|consen 1380 CEKPR 1384 (1387)
T ss_pred             cCCcC
Confidence            77643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=9.5e-13  Score=142.90  Aligned_cols=239  Identities=11%  Similarity=0.070  Sum_probs=153.3

Q ss_pred             ccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      +..|.+++...   ...+.+..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++.....  ........++|+|
T Consensus       183 ~~~i~i~d~dg---~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSP  257 (429)
T PRK01742        183 PYEVRVADYDG---FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSP  257 (429)
T ss_pred             eEEEEEECCCC---CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe--cCCCccCceeECC
Confidence            35566666322   2245677788899999999999999887654   46999999887542211  1222344689999


Q ss_pred             CCCCCEEEEE-ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          104 ETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       104 ~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                      +  |+.|+.+ +.+|.+.||.+....+.         ...+..+...+....|+|++..+++++..++...+|++.....
T Consensus       258 D--G~~La~~~~~~g~~~Iy~~d~~~~~---------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~  326 (429)
T PRK01742        258 D--GSRLAFASSKDGVLNIYVMGANGGT---------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG  326 (429)
T ss_pred             C--CCEEEEEEecCCcEEEEEEECCCCC---------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            9  6777665 46887776654321111         3344556667888999996544555556778899998764321


Q ss_pred             CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCC
Q 004685          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (737)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (737)
                      .                     ...+ .   +..  ....|+|+ ++.|+..+.++ +.+||+.+++.....        
T Consensus       327 ~---------------------~~~l-~---~~~--~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~lt--------  369 (429)
T PRK01742        327 G---------------------ASLV-G---GRG--YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEVLS--------  369 (429)
T ss_pred             C---------------------eEEe-c---CCC--CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEEec--------
Confidence            1                     0011 0   111  34679997 57777777655 556999876422110        


Q ss_pred             CccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC--CCCcceeeeecCCCCeeeeeccCC
Q 004685          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN--HAGGRAMRYTVGDASKIMSFTPTL  333 (737)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~p~~  333 (737)
                                  ...   ....+.|+|+|++|+.++.++.+.+|.+.  ++.....+..+...+...+|+|..
T Consensus       370 ------------~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        370 ------------STF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             ------------CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence                        000   12357899999999999999988888763  345445555555667778888854

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=3e-13  Score=134.13  Aligned_cols=202  Identities=21%  Similarity=0.277  Sum_probs=147.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCC
Q 004685           54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  133 (737)
Q Consensus        54 ~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~  133 (737)
                      .+++|+++|..|++|+.||++|||++.....+... ..|...|.++.|+|+  +.+|++-+.| ..+||+.+++..    
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~----  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA----  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch----
Confidence            68999999999999999999999999888877777 789999999999999  7999999999 999999997532    


Q ss_pred             CCCCCCceee--ccCCCceeEEEEecCC---C-cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          134 DNAITPSALY--QCHTRRVKKLAVEVGN---P-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       134 ~~~~~~~~~~--~~h~~~v~~l~~~p~~---~-~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                            +...  ..-......+.|+.++   . .+++....-+.|..||+.....-                    ....
T Consensus       220 ------~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--------------------~~l~  273 (398)
T KOG0771|consen  220 ------LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--------------------NFLR  273 (398)
T ss_pred             ------hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--------------------cccc
Confidence                  1111  1122234556776533   1 22333344567777776654310                    0000


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                      ..........|.+++.+++ +++++.|+.||.|-|++..+.+.+.-+.                   +.|.. -|+.+.|
T Consensus       274 ~~~~~~~~~siSsl~VS~d-Gkf~AlGT~dGsVai~~~~~lq~~~~vk-------------------~aH~~-~VT~ltF  332 (398)
T KOG0771|consen  274 LRKKIKRFKSISSLAVSDD-GKFLALGTMDGSVAIYDAKSLQRLQYVK-------------------EAHLG-FVTGLTF  332 (398)
T ss_pred             hhhhhhccCcceeEEEcCC-CcEEEEeccCCcEEEEEeceeeeeEeeh-------------------hhhee-eeeeEEE
Confidence            1111122347899999997 6999999999999999998876443322                   33444 5999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCC
Q 004685          288 SPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       288 sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +|+.++++..+.+....+..+.-
T Consensus       333 ~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  333 SPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cCCcCcccccccCCceeEEEEee
Confidence            99999999999998888887765

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.5e-12  Score=118.09  Aligned_cols=233  Identities=14%  Similarity=0.182  Sum_probs=155.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------Ce-EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSS---------RK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~---------~~-~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      ..|.+-+|+|.+++|+.|..+|.|.+..+..         ++ .+..+ ++|+.+|..++|..    .+|++|+ ||.|+
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e-qahdgpiy~~~f~d----~~Lls~g-dG~V~   84 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE-QAHDGPIYYLAFHD----DFLLSGG-DGLVY   84 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec-cccCCCeeeeeeeh----hheeecc-CceEE
Confidence            3566778999999999999999999998863         22 33344 79999999999984    4777776 59999


Q ss_pred             EEecCCCCCCCCCCC---CCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          121 LFNLSRFSGRGLDDN---AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       121 iwd~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      -|..+..........   ...|.+.-...-..|+++...|..+.+| .++.|+.++.||+++++.               
T Consensus        85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i---------------  148 (325)
T KOG0649|consen   85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRI---------------  148 (325)
T ss_pred             EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEE---------------
Confidence            999876433110000   0011111111234688999999655555 555899999999999862               


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (737)
                                ...+.+|+..+.++.--.. ...+++|+.||++|+||+++.+.+..+..--.+ .+.          +.+
T Consensus       149 ----------~r~~rGHtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~-~~l----------Rp~  206 (325)
T KOG0649|consen  149 ----------QREYRGHTDYVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP-NLL----------RPD  206 (325)
T ss_pred             ----------EEEEcCCcceeeeeeeccc-CcceeecCCCccEEEEeccccceeEEeccccCh-hhc----------Ccc
Confidence                      3345678888988887443 358999999999999999999876665321110 111          223


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004685          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (737)
Q Consensus       278 ~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (737)
                      -+.+|.+++.+.  .+++.|+ ...+.+|+++..+.. ..+.....+..+.|-.
T Consensus       207 ~g~wigala~~e--dWlvCGg-Gp~lslwhLrsse~t-~vfpipa~v~~v~F~~  256 (325)
T KOG0649|consen  207 WGKWIGALAVNE--DWLVCGG-GPKLSLWHLRSSEST-CVFPIPARVHLVDFVD  256 (325)
T ss_pred             cCceeEEEeccC--ceEEecC-CCceeEEeccCCCce-EEEecccceeEeeeec
Confidence            444687777654  4665554 458999999996543 3334444444555544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.49  E-value=7.7e-12  Score=138.67  Aligned_cols=192  Identities=18%  Similarity=0.245  Sum_probs=132.5

Q ss_pred             EECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEe
Q 004685           77 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  156 (737)
Q Consensus        77 wd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  156 (737)
                      |+. +|..+..+ ..|...+..++.++.. +.+|++|+.||+|++|+++...+..   .......++..-...+.++.+.
T Consensus      1034 W~p-~G~lVAhL-~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHL-HEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred             CCc-cceEeehh-hhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEec
Confidence            554 46677777 7899999999999875 6999999999999999998654431   1122233344456788899998


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCc-EEEEEe
Q 004685          157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGG  235 (737)
Q Consensus       157 p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~t~s  235 (737)
                      + +++.+|.++.||.|.+.++.......      ..+.          ...+.........+..-+|...... .++.+.
T Consensus      1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~~------~~~~----------~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVSK------RVAT----------QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred             c-CCCeEEEEcCCCeEEEEEcccccccc------ceee----------eeecccccCCCceEEeecccccccceeEEEEE
Confidence            8 67899999999999999988742110      0000          0011111111112333344333334 788888


Q ss_pred             CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          236 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .-+.|..||+++..........                   ...+.|++++.+|.+.++++|+..|.+.+||++=
T Consensus      1171 ~~~~iv~~D~r~~~~~w~lk~~-------------------~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQ-------------------LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred             eccceEEecchhhhhHHhhhcC-------------------ccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence            8999999999987755544321                   1122599999999999999999999999999986

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=2.1e-12  Score=140.20  Aligned_cols=176  Identities=13%  Similarity=0.172  Sum_probs=109.3

Q ss_pred             CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---CcEEEEecCCCCCCCCCCCCCCCceeeccCC
Q 004685           71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHT  147 (737)
Q Consensus        71 dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~  147 (737)
                      +..|.+||.+... ...+ ..|...+.+.+|+|+  |+.|+.++.+   ..|++||+..+...        .+..+.+| 
T Consensus       183 ~~~i~i~d~dg~~-~~~l-t~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~~--------~l~~~~g~-  249 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIV-NRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGARK--------VVASFRGH-  249 (429)
T ss_pred             eEEEEEECCCCCC-ceEe-ccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCceE--------EEecCCCc-
Confidence            4689999987655 3445 567888999999999  7888877654   46999999754321        12223333 


Q ss_pred             CceeEEEEecCCCcEEEEEeCCCcEEEE--EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec
Q 004685          148 RRVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS  225 (737)
Q Consensus       148 ~~v~~l~~~p~~~~~l~s~s~Dg~I~vw--dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  225 (737)
                        ...++|+|++..++++.+.+|.+.+|  |+.++..                       ..+   ..+...+....|+|
T Consensus       250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-----------------------~~l---t~~~~~~~~~~wSp  301 (429)
T PRK01742        250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-----------------------SQL---TSGAGNNTEPSWSP  301 (429)
T ss_pred             --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-----------------------Eee---ccCCCCcCCEEECC
Confidence              34689999553444445578876666  4444321                       111   11233467789999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEE
Q 004685          226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL  305 (737)
Q Consensus       226 ~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~i  305 (737)
                      ++..+++++..++...||++.........                 +   ++..   ....|+|+|++|+.++.++ +.+
T Consensus       302 DG~~i~f~s~~~g~~~I~~~~~~~~~~~~-----------------l---~~~~---~~~~~SpDG~~ia~~~~~~-i~~  357 (429)
T PRK01742        302 DGQSILFTSDRSGSPQVYRMSASGGGASL-----------------V---GGRG---YSAQISADGKTLVMINGDN-VVK  357 (429)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCeEE-----------------e---cCCC---CCccCCCCCCEEEEEcCCC-EEE
Confidence            85334445556788889887542211000                 0   0111   2467999999998887764 555


Q ss_pred             EEcCCC
Q 004685          306 MDVNHA  311 (737)
Q Consensus       306 wd~~~~  311 (737)
                      ||+.++
T Consensus       358 ~Dl~~g  363 (429)
T PRK01742        358 QDLTSG  363 (429)
T ss_pred             EECCCC
Confidence            887764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=9.7e-12  Score=126.58  Aligned_cols=225  Identities=14%  Similarity=0.152  Sum_probs=149.7

Q ss_pred             cCCCCCcccccccccccccccccceeec-ccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCC----------eEEE
Q 004685           20 TDTRPDVNHSLQMHSSLVRRLSQERELE-GHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSR----------KLLH   86 (737)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~----------~~~~   86 (737)
                      +..+++.+..+.+|+..  ..|+++.+. ||...|.|++|-|  +.+++++|..|..|+++|+...          +...
T Consensus        64 lL~SGSDD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~  141 (758)
T KOG1310|consen   64 LLASGSDDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTR  141 (758)
T ss_pred             EEeecCCcceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhh
Confidence            45678899999999966  455666554 8999999999999  4578999999999999999841          2223


Q ss_pred             EEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEE
Q 004685           87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA  166 (737)
Q Consensus        87 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  166 (737)
                      .+ ..|...|.-++-.|+. ...|-+++.||+|+-+|++.+..-..+......+..+...--...|+.++|..+.+|+.|
T Consensus       142 ~~-~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVG  219 (758)
T KOG1310|consen  142 CW-SCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVG  219 (758)
T ss_pred             hh-hhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEec
Confidence            33 6789999999999985 689999999999999999974322111111111222222334567999999999999999


Q ss_pred             eCCCcEEEEEcCCCCCCCCCC-----CCCCc--cceEEEeccCCceeeccC-CCCCccceEEEEEecCCCcEEEEEeCCC
Q 004685          167 SEDGTLRQHDFRQGSSCPPAG-----SSHQE--CRNILLDLRCGAKRSLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (737)
Q Consensus       167 s~Dg~I~vwdl~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~t~s~Dg  238 (737)
                      +.|-..++||.+...+....-     ....+  |...+.   .++...... .......++-+.|+|++ .-|++.-...
T Consensus       220 gsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~---p~hlkn~~gn~~~~~~~~t~vtfnpNG-tElLvs~~gE  295 (758)
T KOG1310|consen  220 GSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS---PGHLKNSQGNLDRYITCCTYVTFNPNG-TELLVSWGGE  295 (758)
T ss_pred             CCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec---CccccCcccccccceeeeEEEEECCCC-cEEEEeeCCe
Confidence            999999999976544331111     01111  111111   011100000 01112235678899974 5666666667


Q ss_pred             cEEEEECCCCCCcc
Q 004685          239 FARLYDRRMLPPLT  252 (737)
Q Consensus       239 ~i~iwd~~~~~~~~  252 (737)
                      .|++||+...+...
T Consensus       296 hVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  296 HVYLFDVNEDKSPT  309 (758)
T ss_pred             EEEEEeecCCCCce
Confidence            89999999776443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=4.4e-12  Score=123.77  Aligned_cols=277  Identities=12%  Similarity=0.065  Sum_probs=183.5

Q ss_pred             ccCCCCCcccccccccc---ccccc-ccceeecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCc
Q 004685           19 HTDTRPDVNHSLQMHSS---LVRRL-SQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS   93 (737)
Q Consensus        19 ~~~~~~~~~~~~~~~~~---~~~~~-~~~~~l~~-H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~   93 (737)
                      .+..+++.+..+.+|..   ..++. |++..... |...|.|++|.....+|++|..+++|.+.|+++.+.+..+  .|.
T Consensus        69 ~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~--~~~  146 (609)
T KOG4227|consen   69 RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA--NEN  146 (609)
T ss_pred             eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee--ccc
Confidence            34667888888888873   23333 55555543 4589999999999999999999999999999999988877  344


Q ss_pred             ---cceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004685           94 ---ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (737)
Q Consensus        94 ---~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg  170 (737)
                         +.|..+..+|.  .+.|++.+.++.|.+||.+......      . +............+.|+|..+.+|++.+..+
T Consensus       147 ~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~------~-~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~  217 (609)
T KOG4227|consen  147 NNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPI------S-LVLPANSGKNFYTAEFHPETPALILVNSETG  217 (609)
T ss_pred             CcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCC------c-eeeecCCCccceeeeecCCCceeEEeccccC
Confidence               48999999998  6999999999999999999643221      1 2223334556788999999999999999999


Q ss_pred             cEEEEEcCCCCCCCCCC-------CCCCccc-------------------eEEEeccCCceeeccCCCC-----CccceE
Q 004685          171 TLRQHDFRQGSSCPPAG-------SSHQECR-------------------NILLDLRCGAKRSLADPPK-----QTLSLK  219 (737)
Q Consensus       171 ~I~vwdl~~~~~~~~~~-------~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-----~~~~v~  219 (737)
                      .+.+||.+.........       ....+..                   .+++++.......+.+...     ....+.
T Consensus       218 G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~K  297 (609)
T KOG4227|consen  218 GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIK  297 (609)
T ss_pred             CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeee
Confidence            99999998765431100       0000111                   1122222211111111111     123456


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc---ccCCCCCCCCcccccc-ccccCCCCcccceeEEEEcCCCCEEE
Q 004685          220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS---CQKRMSPPPCVNYFCP-MHLSEHGRSSLHLTHVTFSPNGEEVL  295 (737)
Q Consensus       220 ~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~  295 (737)
                      +|+|-.+  ..+++|+.+-.|++|.+.....-..   +....+. .+...+.. ......||.. -++.|.|+|...+|+
T Consensus       298 S~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~-~~~~~~i~~~~~VLrGHRS-v~NQVRF~~H~~~l~  373 (609)
T KOG4227|consen  298 SMTFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEE-MPSEIFIEKELTVLRGHRS-VPNQVRFSQHNNLLV  373 (609)
T ss_pred             eeeeecc--eeeeccCcccceEEEecCCCccccCccccCcchhh-CchhheecceeEEEecccc-cccceeecCCcceEe
Confidence            7788764  5799999999999999864432222   1111000 00011111 1111245655 488999999999999


Q ss_pred             EEeCCCeEEEEEcCC
Q 004685          296 LSYSGEHVYLMDVNH  310 (737)
Q Consensus       296 ~g~~dg~v~iwd~~~  310 (737)
                      +.+-.+.+++|.-..
T Consensus       374 SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  374 SSGVENSFKLWSDHR  388 (609)
T ss_pred             ccchhhheecccccc
Confidence            988899999998665

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=6.7e-12  Score=135.32  Aligned_cols=254  Identities=11%  Similarity=0.124  Sum_probs=168.5

Q ss_pred             CCCCcccccccccccc--cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEE
Q 004685           22 TRPDVNHSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT   99 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v   99 (737)
                      +....+++|.+|+...  ..-.....|.=|...|++++|+++|.+|.+|+..|.+.+|.+.+++  ++|++--.++|..+
T Consensus       221 Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i  298 (792)
T KOG1963|consen  221 AAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHI  298 (792)
T ss_pred             EEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEE
Confidence            3456779999999766  3334556788899999999999999999999999999999999988  55657788999999


Q ss_pred             EEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc-ee-eccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004685          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS-AL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (737)
Q Consensus       100 ~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~-~~-~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl  177 (737)
                      .++|+  +++.+....|..|.+-.......... ..-+.+. .. -....+-.+.++++| ..+.++-.+..|.|.+||+
T Consensus       299 ~vS~d--s~~~sl~~~DNqI~li~~~dl~~k~t-Isgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl  374 (792)
T KOG1963|consen  299 VVSPD--SDLYSLVLEDNQIHLIKASDLEIKST-ISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDL  374 (792)
T ss_pred             EEcCC--CCeEEEEecCceEEEEeccchhhhhh-ccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEec
Confidence            99999  68888888999999988754332211 0000111 00 112344567888988 5577778899999999999


Q ss_pred             CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe--------CC--CcEEEEECCC
Q 004685          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--------SD--AFARLYDRRM  247 (737)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s--------~D--g~i~iwd~~~  247 (737)
                      .+...+.....       .......+.       ..+...+++++.+.. +++++|.-        .|  -.+++|-...
T Consensus       375 ~td~~i~~~~v-------~~~n~~~~~-------~n~~v~itav~~~~~-gs~maT~E~~~d~~~~~~~e~~LKFW~~n~  439 (792)
T KOG1963|consen  375 YTDSTIYKLQV-------CDENYSDGD-------VNIQVGITAVARSRF-GSWMATLEARIDKFNFFDGEVSLKFWQYNP  439 (792)
T ss_pred             cccceeeeEEE-------EeecccCCc-------ceeEEeeeeehhhcc-ceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence            88764411100       000001111       023345677777776 67888763        22  3577886654


Q ss_pred             CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 004685          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~  311 (737)
                      ...-               |.........|...-+..+..+|... .+++++.||.+++|-+...
T Consensus       440 ~~kt---------------~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~  489 (792)
T KOG1963|consen  440 NSKT---------------FILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD  489 (792)
T ss_pred             Ccce---------------eEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence            3221               11111111224433344444555444 8999999999999998763

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.46  E-value=6.2e-11  Score=124.48  Aligned_cols=197  Identities=15%  Similarity=0.135  Sum_probs=121.1

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeec
Q 004685           65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ  144 (737)
Q Consensus        65 lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  144 (737)
                      +++-..++.|.|.|..+.+.+..+ ......-..+.|+|+  +.++++++.||.|.++|+.+.+          .+..+.
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i-~~~~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~~----------~v~~i~   75 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARI-PTGGAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATGK----------VVATIK   75 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEE-E-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSS----------EEEEEE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEE-cCCCCceeEEEecCC--CCEEEEEcCCCeEEEEECCccc----------EEEEEe
Confidence            345667899999999999999998 333333445779999  7889889999999999999733          245554


Q ss_pred             cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEe
Q 004685          145 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  224 (737)
Q Consensus       145 ~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  224 (737)
                      . .....++++++++..+++++..++.+.++|.++.+.+.           .+   ..+..    ........+.++..+
T Consensus        76 ~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~-----------~I---~~~~~----~~~~~~~Rv~aIv~s  136 (369)
T PF02239_consen   76 V-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK-----------TI---PTGGM----PVDGPESRVAAIVAS  136 (369)
T ss_dssp             --SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE-----------EE---E--EE-----TTTS---EEEEEE-
T ss_pred             c-CCCcceEEEcCCCCEEEEEecCCCceeEecccccccee-----------ec---ccccc----cccccCCCceeEEec
Confidence            3 34568899999554444455678999999998876431           10   00000    000123456677778


Q ss_pred             cCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeE
Q 004685          225 STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHV  303 (737)
Q Consensus       225 p~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v  303 (737)
                      |..+.++++--.-+.|.+.|....+.+..-.           .         ..+.......|+|+++|++++.. ++.|
T Consensus       137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-----------i---------~~g~~~~D~~~dpdgry~~va~~~sn~i  196 (369)
T PF02239_consen  137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-----------I---------KVGRFPHDGGFDPDGRYFLVAANGSNKI  196 (369)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTTSSCEEEEE-----------E---------E--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred             CCCCEEEEEEccCCeEEEEEeccccccceee-----------e---------cccccccccccCcccceeeeccccccee
Confidence            8754455555555888888877654321100           0         01113667899999999877654 7799


Q ss_pred             EEEEcCCCCc
Q 004685          304 YLMDVNHAGG  313 (737)
Q Consensus       304 ~iwd~~~~~~  313 (737)
                      -++|..+++.
T Consensus       197 ~viD~~~~k~  206 (369)
T PF02239_consen  197 AVIDTKTGKL  206 (369)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEeeccceE
Confidence            9999998654

...

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.45  E-value=4.6e-11  Score=125.68  Aligned_cols=272  Identities=8%  Similarity=0.093  Sum_probs=163.3

Q ss_pred             CCcccccccccccc-cccccceeecccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECC-CCeE--EEEEcccCccceEE
Q 004685           24 PDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISG-SDDTHINVWSYS-SRKL--LHSIETGHSANVFC   98 (737)
Q Consensus        24 ~~~~~~~~~~~~~~-~~~~~~~~l~~H~~~V~~l~~s~~g~~lasg-s~dg~V~vwd~~-~~~~--~~~~~~~h~~~V~~   98 (737)
                      ...++.|.+|+... .+++.+.++. +.+....|+++|++++|+++ ..++.|.+|++. +++.  +...  ........
T Consensus         8 ~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~   84 (330)
T PRK11028          8 SPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTH   84 (330)
T ss_pred             cCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceE
Confidence            34567888888532 2344556665 34567789999999988765 458899999997 3332  2222  12345678


Q ss_pred             EEEeeCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004685           99 TKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (737)
Q Consensus        99 v~~sp~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl  177 (737)
                      ++|+|+  +++|++++. ++.|.+|++... +..     ......+. +.....+++++|++..++++...++.|.+||+
T Consensus        85 i~~~~~--g~~l~v~~~~~~~v~v~~~~~~-g~~-----~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~  155 (330)
T PRK11028         85 ISTDHQ--GRFLFSASYNANCVSVSPLDKD-GIP-----VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL  155 (330)
T ss_pred             EEECCC--CCEEEEEEcCCCeEEEEEECCC-CCC-----CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence            999999  677776654 899999999742 111     01122222 23446778999955445566667799999999


Q ss_pred             CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC-CCcEEEEECCCCC-Cccccc
Q 004685          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLP-PLTSCQ  255 (737)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~-Dg~i~iwd~~~~~-~~~~~~  255 (737)
                      .+...+....               .  ..+...  .......+.|+|+ +++++++.. ++.|.+||+.... .+..+.
T Consensus       156 ~~~g~l~~~~---------------~--~~~~~~--~g~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~  215 (330)
T PRK11028        156 SDDGHLVAQE---------------P--AEVTTV--EGAGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQ  215 (330)
T ss_pred             CCCCcccccC---------------C--CceecC--CCCCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence            8643210000               0  000000  0123567899997 467666654 8999999997421 111110


Q ss_pred             CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCccee---eeecCCCCeeeeecc
Q 004685          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAM---RYTVGDASKIMSFTP  331 (737)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~p  331 (737)
                      .       +... +....   +.. ....+.++|+|++++++.. ++.|.+|++........   ....+..++.+.++|
T Consensus       216 ~-------~~~~-p~~~~---~~~-~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~  283 (330)
T PRK11028        216 T-------LDMM-PADFS---DTR-WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH  283 (330)
T ss_pred             E-------EecC-CCcCC---CCc-cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC
Confidence            0       0000 00000   011 2446899999999999865 78999999976442222   222344566788888


Q ss_pred             CCCCccCC
Q 004685          332 TLNGLELQ  339 (737)
Q Consensus       332 ~~~~~~~~  339 (737)
                      +.+.+...
T Consensus       284 dg~~l~va  291 (330)
T PRK11028        284 SGKYLIAA  291 (330)
T ss_pred             CCCEEEEE
Confidence            87666553

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=8.7e-12  Score=114.59  Aligned_cols=211  Identities=18%  Similarity=0.234  Sum_probs=144.7

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE------EEE-EcccC-----ccceEEEEEeeCCCCC
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------LHS-IETGH-----SANVFCTKFVPETSDE  108 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~------~~~-~~~~h-----~~~V~~v~~sp~~~~~  108 (737)
                      .++.+.++|.++|+.|+|.  ..+|++|+. |.|+=|.......      +.. ..+-|     -..|+++...|..  +
T Consensus        53 ~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--n  127 (325)
T KOG0649|consen   53 LKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--N  127 (325)
T ss_pred             cceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--C
Confidence            4566779999999999998  456777764 9999998764322      000 00112     2468999999984  4


Q ss_pred             EEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCC
Q 004685          109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (737)
Q Consensus       109 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~  188 (737)
                      -++.++.|+.++-||+..+.          ....+++|++.|.++.-...+++ +++|+.||++++||.++.+.+..+..
T Consensus       128 Si~~AgGD~~~y~~dlE~G~----------i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  128 SILFAGGDGVIYQVDLEDGR----------IQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             cEEEecCCeEEEEEEecCCE----------EEEEEcCCcceeeeeeecccCcc-eeecCCCccEEEEeccccceeEEecc
Confidence            55555589999999999743          26789999999999998654554 55999999999999999885522211


Q ss_pred             CCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccc
Q 004685          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  268 (737)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  268 (737)
                      -.           ...   . ..+.....|.+++.+.   .++++|+ ...+.+|.+++......++.+           
T Consensus       197 yk-----------~~~---~-lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~t~vfpip-----------  246 (325)
T KOG0649|consen  197 YK-----------NPN---L-LRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSESTCVFPIP-----------  246 (325)
T ss_pred             cc-----------Chh---h-cCcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCceEEEecc-----------
Confidence            10           000   0 0111234566666653   5777775 467999999988766555321           


Q ss_pred             cccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       269 ~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                                 .++..+.|..  ..+++++..+.|.-|.+.-
T Consensus       247 -----------a~v~~v~F~~--d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  247 -----------ARVHLVDFVD--DCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             -----------cceeEeeeec--ceEEEeccccceeeeeecc
Confidence                       1466778854  4688888888999997764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.40  E-value=2.2e-10  Score=111.97  Aligned_cols=217  Identities=19%  Similarity=0.283  Sum_probs=147.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc--CccceEEEEEeeCCCCCEEEEEE--CCCcEEEEecCC
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGA--GDAEVRLFNLSR  126 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~l~sgs--~dg~I~iwd~~~  126 (737)
                      .+|.++.++.  ++|+.+=.+ .|.|||+.+.+.++++...  +...+.++++++.  +.+++.-+  ..|.|.|||..+
T Consensus        88 t~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~--n~ylAyp~s~t~GdV~l~d~~n  162 (391)
T KOG2110|consen   88 TSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA--NCYLAYPGSTTSGDVVLFDTIN  162 (391)
T ss_pred             CceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCC--CceEEecCCCCCceEEEEEccc
Confidence            4688888764  567766654 5999999999999988543  3344555444444  45666532  359999999986


Q ss_pred             CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc-EEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~-I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                                .++...+..|.+.+.+++|++ ++.+|||+|..|+ |+++.+..++              .++.++.|..
T Consensus       163 ----------l~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~--------------kl~eFRRG~~  217 (391)
T KOG2110|consen  163 ----------LQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQ--------------KLYEFRRGTY  217 (391)
T ss_pred             ----------ceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCcc--------------EeeeeeCCce
Confidence                      345778889999999999999 7799999999987 6899998876              3455554432


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC---------------CC-------CC
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS---------------PP-------PC  263 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~---------------~~-------~~  263 (737)
                               ...|.+++|+|+ .++|++.+..++|++|.+.....- ....+..               .|       ..
T Consensus       218 ---------~~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~~~-~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~  286 (391)
T KOG2110|consen  218 ---------PVSIYSLSFSPD-SQFLAASSNTETVHIFKLEKVSNN-PPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQ  286 (391)
T ss_pred             ---------eeEEEEEEECCC-CCeEEEecCCCeEEEEEecccccC-CCCCCCCCCcccchhhhhhhhhcchhhhhhhhh
Confidence                     357899999998 579999999999999998754311 0000000               00       01


Q ss_pred             ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .+.|....+...+..  .+..+.-.+...++.+++.||.++.|.+.-
T Consensus       287 ~R~FAt~~l~~s~~~--~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  287 SRKFATAKLPESGRK--NICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             ccceeEEEccCCCcc--ceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence            112222222222221  233333335788999999999999999876

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.40  E-value=2.8e-12  Score=130.08  Aligned_cols=207  Identities=14%  Similarity=0.187  Sum_probs=149.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCcee
Q 004685           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  142 (737)
Q Consensus        63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~  142 (737)
                      ..++.++.||.+.|.+ ..++....+ ..|.+.+.|-.|+|+  |.-|++++.||.|++|.-.-.           ...+
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsGM-----------LRSt  140 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSI-SAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSGM-----------LRST  140 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhh-hhhhhhhhhcccCCC--CceeeeecCCceEEEEeccch-----------HHHH
Confidence            5788899999999988 445555666 789999999999999  799999999999999975521           1233


Q ss_pred             eccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEE
Q 004685          143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD  222 (737)
Q Consensus       143 ~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  222 (737)
                      +.....+|.|++|.|+..+.+++.+.  .+.+=-+.....                         +..-+.|.+-|.++.
T Consensus       141 l~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k-------------------------~i~WkAHDGiiL~~~  193 (737)
T KOG1524|consen  141 VVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANSK-------------------------IIRWRAHDGLVLSLS  193 (737)
T ss_pred             HhhcCceeEEEEECCCCCceEEecCC--eEEEeecccccc-------------------------eeEEeccCcEEEEee
Confidence            44567789999999977777776654  444433333221                         111235778899999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCe
Q 004685          223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH  302 (737)
Q Consensus       223 ~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~  302 (737)
                      |++. .+++++|+.|-..++||..........                      .+.++|++++|.|+ ..++.++.. +
T Consensus       194 W~~~-s~lI~sgGED~kfKvWD~~G~~Lf~S~----------------------~~ey~ITSva~npd-~~~~v~S~n-t  248 (737)
T KOG1524|consen  194 WSTQ-SNIIASGGEDFRFKIWDAQGANLFTSA----------------------AEEYAITSVAFNPE-KDYLLWSYN-T  248 (737)
T ss_pred             cCcc-ccceeecCCceeEEeecccCcccccCC----------------------hhccceeeeeeccc-cceeeeeee-e
Confidence            9998 589999999999999998754332221                      23347999999999 556666554 5


Q ss_pred             EEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCccc
Q 004685          303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQ  347 (737)
Q Consensus       303 v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  347 (737)
                      +++=..+           ...+-.++|+|++..++.....+..+.
T Consensus       249 ~R~~~p~-----------~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  249 ARFSSPR-----------VGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeecCCC-----------ccceEEEEEcCCCceeeccccCceEEE
Confidence            5522222           345667899999998888777655543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.38  E-value=6.1e-11  Score=115.79  Aligned_cols=195  Identities=12%  Similarity=0.161  Sum_probs=143.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           52 CVNAISWNSKGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~d--g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      .|--+-|+.  .++|..+.+  ..+++.++.++..++.+.  ...+|.+|.++.+    .|+.+-.+. |+|||++... 
T Consensus        48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~----RLvV~Lee~-IyIydI~~Mk-  117 (391)
T KOG2110|consen   48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNRK----RLVVCLEES-IYIYDIKDMK-  117 (391)
T ss_pred             EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEccc----eEEEEEccc-EEEEecccce-
Confidence            455566654  455554443  459999999998888873  6788999999875    566665544 9999999732 


Q ss_pred             CCCCCCCCCCceeec---cCCCceeEEEEecCCCcEEEE-Ee-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685          130 RGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWS-AS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s-~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (737)
                               .+.++.   .+...+.++++++.+ .+++- ++ ..|.|.+||+.+-++                      
T Consensus       118 ---------lLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~----------------------  165 (391)
T KOG2110|consen  118 ---------LLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQP----------------------  165 (391)
T ss_pred             ---------eehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEccccee----------------------
Confidence                     244333   355556666666633 45543 22 358899999887653                      


Q ss_pred             eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc-EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (737)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (737)
                         +.....|.+.+.+++|+++ |.+|||++..|+ ||||.+.+++.+.++...                   .....|.
T Consensus       166 ---v~~I~aH~~~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFRRG-------------------~~~~~Iy  222 (391)
T KOG2110|consen  166 ---VNTINAHKGPLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFRRG-------------------TYPVSIY  222 (391)
T ss_pred             ---eeEEEecCCceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeeeCC-------------------ceeeEEE
Confidence               2233468899999999997 699999999985 789999999887776432                   2222599


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       284 ~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +++|+|++.+|.+.+..++|++|.+.+.
T Consensus       223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  223 SLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            9999999999999999999999999874

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=6.3e-11  Score=116.48  Aligned_cols=159  Identities=9%  Similarity=0.074  Sum_probs=103.6

Q ss_pred             hhhhhccccCCCCCccccccccccc----ccccccceeecccCCceEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeEE
Q 004685           12 YDMLDTRHTDTRPDVNHSLQMHSSL----VRRLSQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSSRKLL   85 (737)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~H~~~V~~l~~s~~g--~~lasgs~dg~V~vwd~~~~~~~   85 (737)
                      +.-|+.-+++...+..+.+.+....    ..........-.-...|..++|.-++  +.|..++.|..+..+.+....+.
T Consensus        13 ~~a~~~~~Vg~~tG~lkgi~~~~~t~~~~~~nls~~~s~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~   92 (412)
T KOG3881|consen   13 QSALMPLYVGTHTGQLKGIYLKRNTVISEDENLSALNSGVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS   92 (412)
T ss_pred             HhhccceEEeccccccccceEeeccccccchhhhhhhcccchhhhhhhheeecCCceeEeeccccCcccccccccCCccc
Confidence            3456666777777777666655432    22222333233445678899998655  45666657777888887766544


Q ss_pred             EEE-----cccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC
Q 004685           86 HSI-----ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  160 (737)
Q Consensus        86 ~~~-----~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  160 (737)
                      ...     ......+|..++...    ..|++|-.+|.+.+|....+....      .++..+..+ ..+..+.-++..+
T Consensus        93 s~~~~~~~~~l~~~~I~gl~~~d----g~Litc~~sG~l~~~~~k~~d~hs------s~l~~la~g-~g~~~~r~~~~~p  161 (412)
T KOG3881|consen   93 SSLDDAKTVSLGTKSIKGLKLAD----GTLITCVSSGNLQVRHDKSGDLHS------SKLIKLATG-PGLYDVRQTDTDP  161 (412)
T ss_pred             cccccccccccccccccchhhcC----CEEEEEecCCcEEEEeccCCcccc------ccceeeecC-CceeeeccCCCCC
Confidence            332     134567777777664    478899999999999998654221      223334333 5567777777777


Q ss_pred             cEEEEEeCC--CcEEEEEcCCCC
Q 004685          161 HVVWSASED--GTLRQHDFRQGS  181 (737)
Q Consensus       161 ~~l~s~s~D--g~I~vwdl~~~~  181 (737)
                      .++++|+..  .-+++||+...+
T Consensus       162 ~Iva~GGke~~n~lkiwdle~~~  184 (412)
T KOG3881|consen  162 YIVATGGKENINELKIWDLEQSK  184 (412)
T ss_pred             ceEecCchhcccceeeeecccce
Confidence            888888888  788889888764

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.37  E-value=3.2e-11  Score=122.88  Aligned_cols=249  Identities=17%  Similarity=0.150  Sum_probs=153.5

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-Ec--ccCccceEEEEEeeC--C-CCCEEEEEECCCcEEEEecCCC
Q 004685           54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IE--TGHSANVFCTKFVPE--T-SDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        54 ~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~-~~--~~h~~~V~~v~~sp~--~-~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                      ....++-.|.+|+-.- ...+.+|+...+..+.. +.  .-.....+|-+|+..  . .+--|+.|-.-|.|.+.|....
T Consensus       127 ~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~  205 (636)
T KOG2394|consen  127 TNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF  205 (636)
T ss_pred             eeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence            3444444566554332 23688898874322111 10  011223344445321  1 0345777888899999887641


Q ss_pred             CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC-CCCCCCC--CccceEEEeccCCc
Q 004685          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC-PPAGSSH--QECRNILLDLRCGA  204 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~-~~~~~~~--~~~~~~~~~~~~~~  204 (737)
                      .-...      .-....-.+..|+|+.|-|.+...++.+-.+|.+.++|..-.-.. .......  .+...+......-.
T Consensus       206 ~~skl------fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~  279 (636)
T KOG2394|consen  206 EVSKL------FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKT  279 (636)
T ss_pred             HHHHh------hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeecccc
Confidence            11000      000111234789999999988888889999999999987322111 0000011  11111111100000


Q ss_pred             eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (737)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (737)
                      ...+.........|+..+|+|+ +++||+.+.||.+||||..+.+.+..+..                    -.+ ...|
T Consensus       280 rNPv~~w~~~~g~in~f~FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg~mkS--------------------YFG-GLLC  337 (636)
T KOG2394|consen  280 RNPVARWHIGEGSINEFAFSPD-GKYLATVSQDGFLRIFDFDTQELLGVMKS--------------------YFG-GLLC  337 (636)
T ss_pred             CCccceeEeccccccceeEcCC-CceEEEEecCceEEEeeccHHHHHHHHHh--------------------hcc-ceEE
Confidence            0112222223458899999996 79999999999999999988665433210                    111 4899


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004685          285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (737)
Q Consensus       285 v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (737)
                      |+|||||+||++|+.|..|.||.+...+.+..-.+|...+..++|.|
T Consensus       338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            99999999999999999999999999888888889999999999998

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.36  E-value=3.6e-11  Score=115.14  Aligned_cols=204  Identities=15%  Similarity=0.170  Sum_probs=149.3

Q ss_pred             ccccccccccccc-cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCe--EEEEEcccCccceEEEEEe
Q 004685           27 NHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRK--LLHSIETGHSANVFCTKFV  102 (737)
Q Consensus        27 ~~~~~~~~~~~~~-~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~-~~~~--~~~~~~~~h~~~V~~v~~s  102 (737)
                      .+.+-+|..+-.. .++.++|..|...|++|+|+|..+.|++|+.|..-.||.. ..++  ....+ ..+....+||.|+
T Consensus        31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~Ws  109 (361)
T KOG1523|consen   31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWS  109 (361)
T ss_pred             CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEeec
Confidence            4567788877777 7899999999999999999999999999999999999998 4443  33344 4688999999999


Q ss_pred             eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                      |.  ++.|++|+....|.||-+...+.=      +-.-+.-+.+.+.|+++.|+| +.-+|++|+.|+..++|..--...
T Consensus       110 P~--enkFAVgSgar~isVcy~E~ENdW------WVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~V  180 (361)
T KOG1523|consen  110 PK--ENKFAVGSGARLISVCYYEQENDW------WVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGV  180 (361)
T ss_pred             Cc--CceEEeccCccEEEEEEEecccce------ehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeecc
Confidence            99  799999999999999988752210      001123456788899999999 668999999999999996421110


Q ss_pred             CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004685          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (737)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~  248 (737)
                      -       ......-|+-+...-..+.......+.+..+.|+|+ +..|+=.+.|..+.+-|....
T Consensus       181 d-------ekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-G~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  181 D-------EKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS-GNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             c-------cCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC-CCEeeEecCCCceEEeecCCC
Confidence            0       000000011111111112233355678999999997 689999999999999988654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=1.7e-11  Score=123.49  Aligned_cols=296  Identities=15%  Similarity=0.107  Sum_probs=201.8

Q ss_pred             hhccccCCCCCcccccccccccccccccceee-cccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCC-CeEE--EEE
Q 004685           15 LDTRHTDTRPDVNHSLQMHSSLVRRLSQEREL-EGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSS-RKLL--HSI   88 (737)
Q Consensus        15 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~-~~~~--~~~   88 (737)
                      .+.--+..+++.+.++.+|+=  .+.++...| .||...|..-.|-|.  ...|++++.||+|++=.+.. +.+.  ..+
T Consensus       151 N~~Gd~l~SgSDD~~vv~WdW--~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl  228 (559)
T KOG1334|consen  151 NQRGDVLASGSDDLQVVVWDW--VSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL  228 (559)
T ss_pred             cccCceeeccCccceEEeehh--hccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence            344455778889999999993  333344444 479999998899883  46799999999999877643 3332  233


Q ss_pred             cccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC---ceeEEEEecCCCcEEEE
Q 004685           89 ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWS  165 (737)
Q Consensus        89 ~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s  165 (737)
                       ..|.++|..++.-|++ ..-|.+++.|+.+.-+|++......       .+.....+..   ....++..|.+.+.+++
T Consensus       229 -~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~-------~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV  299 (559)
T KOG1334|consen  229 -APHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAE-------KFVCREADEKERVGLYTIAVDPRNTNEFAV  299 (559)
T ss_pred             -ccccCccceeeecCCC-CCcccccccccceeeeeeccCCccc-------eeeeeccCCccceeeeeEecCCCCcccccc
Confidence             6799999999999997 7889999999999999998643221       1222333333   57889999999889999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~  245 (737)
                      ++.|..+++||.+.-.........+.-|...+.             ......|++++|+.+. .-|+++-.|-.|++|..
T Consensus       300 gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~-------------~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~  365 (559)
T KOG1334|consen  300 GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV-------------EDDPVNITGLVYSHDG-SELLASYNDEDIYLFNK  365 (559)
T ss_pred             CChhhhhhhhcccchhhccccchhhhcCCcccc-------------ccCcccceeEEecCCc-cceeeeecccceEEecc
Confidence            999999999998875432111111111111110             0234578999999864 56666667888999944


Q ss_pred             CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE-EcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCC
Q 004685          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT-FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS  324 (737)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~-~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~  324 (737)
                      ..+. -...    .+......+.+..+.+|.... .|..+- |-|...|+++|+.-|.|.||+-.+++....+.+-.+.+
T Consensus       366 ~~~~-G~~p----~~~s~~~~~~k~vYKGHrN~~-TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VV  439 (559)
T KOG1334|consen  366 SMGD-GSEP----DPSSPREQYVKRVYKGHRNSR-TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVV  439 (559)
T ss_pred             cccc-CCCC----CCCcchhhccchhhccccccc-ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceE
Confidence            3221 1000    000111122333343433333 377776 45899999999999999999999988888888888899


Q ss_pred             eeeeeccCCCCccCCCC
Q 004685          325 KIMSFTPTLNGLELQPP  341 (737)
Q Consensus       325 ~~~~~~p~~~~~~~~~~  341 (737)
                      +++.-+|-.+.++...-
T Consensus       440 NCLEpHP~~PvLAsSGi  456 (559)
T KOG1334|consen  440 NCLEPHPHLPVLASSGI  456 (559)
T ss_pred             eccCCCCCCchhhccCC
Confidence            99999998776665443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.33  E-value=3.7e-12  Score=127.39  Aligned_cols=215  Identities=14%  Similarity=0.173  Sum_probs=165.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      ..-..+.++.+|..|+.|+..|.|-.+|+.+++....+.  -...|.++.|..+  .++|+.+ ....++|||-.--   
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHn--eq~~AVA-QK~y~yvYD~~Gt---  201 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHN--EQFFAVA-QKKYVYVYDNNGT---  201 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcc--hHHHHhh-hhceEEEecCCCc---
Confidence            344678999999999999999999999999999888772  4578999999988  4666655 5678999997631   


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (737)
                              .++.++.| ..|..+.|-| .--+|++++..|.++.-|+..++.+.                         .
T Consensus       202 --------ElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa-------------------------~  246 (545)
T KOG1272|consen  202 --------ELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVA-------------------------S  246 (545)
T ss_pred             --------EEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhH-------------------------H
Confidence                    15556544 4688999999 55788899999999999999998542                         2


Q ss_pred             CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004685          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (737)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~  290 (737)
                      +....+.+..++-+|-+ ..+-+|...|+|.+|...+..++..+.                    .|.+ +|.++++.++
T Consensus       247 ~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKiL--------------------cH~g-~V~siAv~~~  304 (545)
T KOG1272|consen  247 IRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKIL--------------------CHRG-PVSSIAVDRG  304 (545)
T ss_pred             HHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHHH--------------------hcCC-CcceEEECCC
Confidence            22234566778888874 689999999999999999887665543                    1333 6999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004685          291 GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (737)
Q Consensus       291 g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (737)
                      |+|+++++.|..++|||+++...+..... .++...++++.
T Consensus       305 G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq  344 (545)
T KOG1272|consen  305 GRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ  344 (545)
T ss_pred             CcEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence            99999999999999999999664333332 44444444444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.9e-10  Score=125.26  Aligned_cols=235  Identities=13%  Similarity=0.101  Sum_probs=141.9

Q ss_pred             cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEEcccCccceEEEEEeeC
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~  104 (737)
                      ..|.+++..   ....+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++... + ........+.+|+|+
T Consensus       184 ~~l~i~D~~---g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l-~~~~g~~~~~~~SpD  258 (433)
T PRK04922        184 YALQVADSD---GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V-ASFRGINGAPSFSPD  258 (433)
T ss_pred             EEEEEECCC---CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-ccCCCCccCceECCC
Confidence            346666632   2334556677788999999999999988764   3469999998876533 2 233445568899999


Q ss_pred             CCCCEE-EEEECCC--cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc--EEEEEcCC
Q 004685          105 TSDELV-VSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQ  179 (737)
Q Consensus       105 ~~~~~l-~sgs~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~--I~vwdl~~  179 (737)
                        |+.| ++.+.+|  .|++||+..+.           ...+..+.......+|+|++..++++...+|.  |.++|+.+
T Consensus       259 --G~~l~~~~s~~g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~  325 (433)
T PRK04922        259 --GRRLALTLSRDGNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG  325 (433)
T ss_pred             --CCEEEEEEeCCCCceEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence              5655 4556665  58888887532           23334444455678999955434444444555  55556554


Q ss_pred             CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC---cEEEEECCCCCCcccccC
Q 004685          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQK  256 (737)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg---~i~iwd~~~~~~~~~~~~  256 (737)
                      +..                       ..+..   ........+|+|+ ++.++..+.++   .|.+||+.+++.. .+. 
T Consensus       326 g~~-----------------------~~lt~---~g~~~~~~~~SpD-G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-  376 (433)
T PRK04922        326 GSA-----------------------ERLTF---QGNYNARASVSPD-GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-  376 (433)
T ss_pred             CCe-----------------------EEeec---CCCCccCEEECCC-CCEEEEEECCCCceeEEEEECCCCCeE-ECC-
Confidence            431                       11111   0122345799997 46666654332   6999999766532 110 


Q ss_pred             CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004685          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (737)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (737)
                                        .+.   ......|+|||++|+..+.+   +.|+++++.. ............+...+|+|
T Consensus       377 ------------------~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        377 ------------------PGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ------------------CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence                              001   13346899999998877763   4688888754 33333333334445556665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=3.6e-11  Score=119.51  Aligned_cols=189  Identities=15%  Similarity=0.142  Sum_probs=131.9

Q ss_pred             EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (737)
Q Consensus        97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd  176 (737)
                      .+++|+++  |..+++|+.||++|+|+....          ..+.....|...|.++.|+| ++++|++-+.| ...+|+
T Consensus       148 k~vaf~~~--gs~latgg~dg~lRv~~~Ps~----------~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~  213 (398)
T KOG0771|consen  148 KVVAFNGD--GSKLATGGTDGTLRVWEWPSM----------LTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWS  213 (398)
T ss_pred             eEEEEcCC--CCEeeeccccceEEEEecCcc----------hhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEE
Confidence            68999999  799999999999999996642          22555677999999999999 67899999999 999999


Q ss_pred             cCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC--Cc-EEE-EEeCCCcEEEEECCCCCCcc
Q 004685          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PH-LLL-VGGSDAFARLYDRRMLPPLT  252 (737)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~-~l~-t~s~Dg~i~iwd~~~~~~~~  252 (737)
                      ++++..+...                       +......-...|.|+.++  +. +++ .-..-+.|+.||+...+.-.
T Consensus       214 ~~~g~~~a~~-----------------------t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~  270 (398)
T KOG0771|consen  214 VNTGAALARK-----------------------TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN  270 (398)
T ss_pred             eccCchhhhc-----------------------CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence            9998543111                       111122334456666542  12 222 23344677777775443211


Q ss_pred             cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccee-eeecCCCCeeeeecc
Q 004685          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTP  331 (737)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~p  331 (737)
                      .+.              .......+.  .|++++.+++|++++.|+.||.|-|++..+.+.... ...|...++.+.|+|
T Consensus       271 ~l~--------------~~~~~~~~~--siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P  334 (398)
T KOG0771|consen  271 FLR--------------LRKKIKRFK--SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP  334 (398)
T ss_pred             ccc--------------hhhhhhccC--cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC
Confidence            000              000001122  499999999999999999999999999998765443 334677899999999


Q ss_pred             CCCCccC
Q 004685          332 TLNGLEL  338 (737)
Q Consensus       332 ~~~~~~~  338 (737)
                      +.+.+..
T Consensus       335 dsr~~~s  341 (398)
T KOG0771|consen  335 DSRYLAS  341 (398)
T ss_pred             CcCcccc
Confidence            8776655

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=3.8e-10  Score=122.31  Aligned_cols=223  Identities=11%  Similarity=0.097  Sum_probs=136.1

Q ss_pred             eeecccCCceEEEEEcCCCCEEEEEe---CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEE-ECCC--
Q 004685           44 RELEGHQGCVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDA--  117 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~~lasgs---~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg-s~dg--  117 (737)
                      +.+..+...+.+.+|||||+.|+..+   .+..|.+||+.+++.....  .....+...+|+|+  |..|+.. +.+|  
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPD--G~~La~~~~~~g~~  267 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPD--GSKLAFALSKTGSL  267 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--CCCCCcCCeEECCC--CCEEEEEEcCCCCc
Confidence            34445667899999999999888654   2457999999887643322  23334557899999  6766644 4455  


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE--EcCCCCCCCCCCCCCCccce
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw--dl~~~~~~~~~~~~~~~~~~  195 (737)
                      .|.+||+....           ...+..+...+....|+|++..++++...++...+|  |+..+..             
T Consensus       268 ~I~~~d~~tg~-----------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-------------  323 (429)
T PRK03629        268 NLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-------------  323 (429)
T ss_pred             EEEEEECCCCC-----------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-------------
Confidence            48888887532           223333445678899999553344444444555555  4444321             


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---CcEEEEECCCCCCcccccCCCCCCCCccccccccc
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (737)
                                ..+..   .........|+|++ +.++..+.+   ..|.+||+.++... .+.                 
T Consensus       324 ----------~~lt~---~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt-----------------  371 (429)
T PRK03629        324 ----------QRITW---EGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQ-VLT-----------------  371 (429)
T ss_pred             ----------EEeec---CCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCeE-EeC-----------------
Confidence                      11111   11234567899974 666655433   35888898766421 110                 


Q ss_pred             cCCCCcccceeEEEEcCCCCEEEEEeCCCe---EEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEH---VYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       273 ~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (737)
                        ...   ......|+|||++|+.++.++.   ++++++.. .....+..+...+...+|+|.
T Consensus       372 --~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        372 --DTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             --CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CCeEECccCCCCcCCcccCCC
Confidence              000   1234689999999999998764   67777743 444444445556677778774

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=8.5e-11  Score=115.58  Aligned_cols=235  Identities=10%  Similarity=0.085  Sum_probs=159.8

Q ss_pred             ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEEcccCccceEEEEEeeCCCCCEEEEEECC--CcE
Q 004685           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEV  119 (737)
Q Consensus        46 l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d--g~I  119 (737)
                      ....+++|..++..  ...|++|-.+|.+.+|....+.    .+..+  .-...+..+.-++.. ..++++|+..  ..+
T Consensus       101 ~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~-p~Iva~GGke~~n~l  175 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTD-PYIVATGGKENINEL  175 (412)
T ss_pred             cccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCC-CceEecCchhcccce
Confidence            33444555555543  3468888899999999987432    22222  223667778777775 6788889998  889


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      .|||+... .+.......+. ..+. .-.-+++++.|-+.. ...|++++.-+.+++||.+.++.+              
T Consensus       176 kiwdle~~-~qiw~aKNvpn-D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--------------  239 (412)
T KOG3881|consen  176 KIWDLEQS-KQIWSAKNVPN-DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--------------  239 (412)
T ss_pred             eeeecccc-eeeeeccCCCC-ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc--------------
Confidence            99999864 21111100000 0000 012356788898731 578999999999999999977633              


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (737)
                                +..+.-.+.++.++...|. ++.+++|..-+.+..||++.+.......                   . .
T Consensus       240 ----------V~~fd~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~kl~g~~~-------------------k-g  288 (412)
T KOG3881|consen  240 ----------VAQFDFLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGKLLGCGL-------------------K-G  288 (412)
T ss_pred             ----------eeEeccccCcceeeeecCC-CcEEEEecccchhheecccCceeecccc-------------------C-C
Confidence                      3334445678999999997 6899999999999999999887543311                   1 2


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004685          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (737)
Q Consensus       278 ~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (737)
                      ..+.|+++..+|.+++|++++-|..|+|+|+++.+.....|. ....+.+-+.+..
T Consensus       289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~~  343 (412)
T KOG3881|consen  289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDDV  343 (412)
T ss_pred             ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCCc
Confidence            223599999999999999999999999999999554444443 3344455555543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=2e-10  Score=111.67  Aligned_cols=206  Identities=17%  Similarity=0.217  Sum_probs=140.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      -.+..++|++.-.-+|.+..|-.|++||-.. ++...++......|+|++|-|.+ ..-|+.|+..| |+||........
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls-aselavgCr~g-IciW~~s~tln~  175 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS-ASELAVGCRAG-ICIWSDSRTLNA  175 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC-cceeeeeecce-eEEEEcCccccc
Confidence            4678899999777788999999999999766 55555645567889999999997 77888888755 899987642211


Q ss_pred             CCCCC--CCCC--ceeeccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          131 GLDDN--AITP--SALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       131 ~~~~~--~~~~--~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                      .....  ...+  +....+| .+|+++.|.++ +..+++++ .|..|.+||..++..++..                   
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d-gt~l~tAS~gsssi~iWdpdtg~~~pL~-------------------  234 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED-GTILVTASFGSSSIMIWDPDTGQKIPLI-------------------  234 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcCC-CCEEeecccCcceEEEEcCCCCCccccc-------------------
Confidence            10000  0011  1222344 78999999995 56666665 4678999999998754211                   


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (737)
                            +...+.+.-+.|+|+ +.+|+++..|+..++|.... .....-                 .+    .++ .|..
T Consensus       235 ------~~glgg~slLkwSPd-gd~lfaAt~davfrlw~e~q~wt~erw-----------------~l----gsg-rvqt  285 (445)
T KOG2139|consen  235 ------PKGLGGFSLLKWSPD-GDVLFAATCDAVFRLWQENQSWTKERW-----------------IL----GSG-RVQT  285 (445)
T ss_pred             ------ccCCCceeeEEEcCC-CCEEEEecccceeeeehhcccceecce-----------------ec----cCC-ceee
Confidence                  123456788999998 58999999999999995542 211100                 00    112 5999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          285 VTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       285 v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .+|+|+|++|+.+... .-++|.+.-
T Consensus       286 acWspcGsfLLf~~sg-sp~lysl~f  310 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACSG-SPRLYSLTF  310 (445)
T ss_pred             eeecCCCCEEEEEEcC-CceEEEEee
Confidence            9999999987766553 334444443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=9.9e-10  Score=119.09  Aligned_cols=174  Identities=13%  Similarity=0.150  Sum_probs=104.7

Q ss_pred             cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004685           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (737)
Q Consensus        73 ~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (737)
                      .|.+||.+..... .+ ..+...+.+.+|+|+  |+.|+..+.   +..|.+|++..+....        +..+.   ..
T Consensus       180 ~l~~~d~dg~~~~-~l-t~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~~~--------l~~~~---~~  244 (429)
T PRK03629        180 ELRVSDYDGYNQF-VV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAVRQ--------VASFP---RH  244 (429)
T ss_pred             eEEEEcCCCCCCE-Ee-ecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCeEE--------ccCCC---CC
Confidence            6889998765433 33 346678999999999  687776542   4579999987543211        22222   33


Q ss_pred             eeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC
Q 004685          150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (737)
Q Consensus       150 v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  227 (737)
                      +....|+|++..++++.+.+|  .|.+||+.++...                       .+..   ....+....|+|++
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-----------------------~lt~---~~~~~~~~~wSPDG  298 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-----------------------QVTD---GRSNNTEPTWFPDS  298 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----------------------EccC---CCCCcCceEECCCC
Confidence            456899996544555555555  4888898765421                       1111   12345678999984


Q ss_pred             CcEEEEEeC-CCcEEEE--ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---C
Q 004685          228 PHLLLVGGS-DAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---E  301 (737)
Q Consensus       228 ~~~l~t~s~-Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---g  301 (737)
                       +.|+..+. ++...+|  |+.++... .+.                  ..+   .......|+|||++|+..+.+   .
T Consensus       299 -~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt------------------~~~---~~~~~~~~SpDG~~Ia~~~~~~g~~  355 (429)
T PRK03629        299 -QNLAYTSDQAGRPQVYKVNINGGAPQ-RIT------------------WEG---SQNQDADVSSDGKFMVMVSSNGGQQ  355 (429)
T ss_pred             -CEEEEEeCCCCCceEEEEECCCCCeE-Eee------------------cCC---CCccCEEECCCCCEEEEEEccCCCc
Confidence             66655554 4444555  55543211 110                  011   124568899999998887653   2


Q ss_pred             eEEEEEcCC
Q 004685          302 HVYLMDVNH  310 (737)
Q Consensus       302 ~v~iwd~~~  310 (737)
                      .|++||+.+
T Consensus       356 ~I~~~dl~~  364 (429)
T PRK03629        356 HIAKQDLAT  364 (429)
T ss_pred             eEEEEECCC
Confidence            466677655

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.31  E-value=7.1e-11  Score=114.00  Aligned_cols=240  Identities=14%  Similarity=0.206  Sum_probs=156.6

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----EEEEEcccCc------------cceEEEEEeeCCCCCEEEE
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLHSIETGHS------------ANVFCTKFVPETSDELVVS  112 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-----~~~~~~~~h~------------~~V~~v~~sp~~~~~~l~s  112 (737)
                      .+-|.++.|...|++||||..+|.|.++.-+...     ....+ +.|.            ..|..+.|.+.++...++.
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~f-qshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEF-QSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeee-eccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            4578999999999999999999999999754332     12223 3343            5688999999876778888


Q ss_pred             EECCCcEEEEecCCCCCCCCCC-------------------C------CCCCcee-eccCCCceeEEEEecCCCcEEEEE
Q 004685          113 GAGDAEVRLFNLSRFSGRGLDD-------------------N------AITPSAL-YQCHTRRVKKLAVEVGNPHVVWSA  166 (737)
Q Consensus       113 gs~dg~I~iwd~~~~~~~~~~~-------------------~------~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~  166 (737)
                      .+.|.+|++|-+..........                   .      ...|.+. -.+|+--|.+|.++. +...+++ 
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS-  181 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS-  181 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee-
Confidence            8999999999987543322000                   0      0011111 135777889999988 4455544 


Q ss_pred             eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004685          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (737)
Q Consensus       167 s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~  246 (737)
                      ..|-.|.+|++.-...           ...+.|++......      -..-|++..|+|...++|+-++..|.|++-|+|
T Consensus       182 ADdLRINLWnlei~d~-----------sFnIVDIKP~nmEe------LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR  244 (433)
T KOG1354|consen  182 ADDLRINLWNLEIIDQ-----------SFNIVDIKPANMEE------LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR  244 (433)
T ss_pred             ccceeeeeccccccCC-----------ceeEEEccccCHHH------HHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence            4678999999876542           23444444333222      234678899999888899999999999999999


Q ss_pred             CCCCc---ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeee
Q 004685          247 MLPPL---TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY  318 (737)
Q Consensus       247 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~  318 (737)
                      ....-   ..+.....-+. -+.|-...       -..|..+.|+++|+|+++-..- +|++||+.....+...+
T Consensus       245 ~~aLCd~hsKlfEepedp~-~rsffsei-------IsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~  310 (433)
T KOG1354|consen  245 QSALCDAHSKLFEEPEDPS-SRSFFSEI-------ISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETY  310 (433)
T ss_pred             hhhhhcchhhhhccccCCc-chhhHHHH-------hhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEE
Confidence            53211   01100000000 11111111       1148899999999999877655 99999997755444333

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=5.2e-10  Score=121.41  Aligned_cols=230  Identities=10%  Similarity=0.071  Sum_probs=140.8

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEE-EEECC
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGD  116 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~-sgs~d  116 (737)
                      ...+.+..+.+.+.+.+|+|||+.|+..+.+   ..|.+||+.+++... + ......+.+.+|+|+  |+.|+ +.+.+
T Consensus       186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPD--G~~la~~~~~~  261 (427)
T PRK02889        186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPD--GRTLAVALSRD  261 (427)
T ss_pred             CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCC--CCEEEEEEccC
Confidence            3344556678889999999999998877643   459999999886543 3 233455678999999  66665 66778


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004685          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (737)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~  196 (737)
                      |...||.+....+.         ...+..+........|+|++..+++++..++...+|.+.....              
T Consensus       262 g~~~Iy~~d~~~~~---------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--------------  318 (427)
T PRK02889        262 GNSQIYTVNADGSG---------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--------------  318 (427)
T ss_pred             CCceEEEEECCCCC---------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--------------
Confidence            88777776532211         2334445555667889995544444544556777776542210              


Q ss_pred             EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC---cEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004685          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (737)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (737)
                             ....+.. .  .......+|+|+ +++++..+.++   .|.+||+.+++... +.                  
T Consensus       319 -------~~~~lt~-~--g~~~~~~~~SpD-G~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt------------------  368 (427)
T PRK02889        319 -------AAQRVTF-T--GSYNTSPRISPD-GKLLAYISRVGGAFKLYVQDLATGQVTA-LT------------------  368 (427)
T ss_pred             -------ceEEEec-C--CCCcCceEECCC-CCEEEEEEccCCcEEEEEEECCCCCeEE-cc------------------
Confidence                   0011111 0  112235689997 57777666544   59999998764221 10                  


Q ss_pred             CCCCcccceeEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       274 ~~~~~~~~i~~v~~sp~g~~l~~g~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (737)
                       . ..  ......|+|||++|+.++.++   .+++.++. +............+...+|+|.
T Consensus       369 -~-~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        369 -D-TT--RDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             -C-CC--CccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCCC
Confidence             0 00  134578999999998888643   45666663 3433333334455666777774

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.27  E-value=8.1e-11  Score=119.94  Aligned_cols=166  Identities=17%  Similarity=0.231  Sum_probs=119.5

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEc---ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC----
Q 004685           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL----  132 (737)
Q Consensus        60 ~~g~~lasgs~dg~V~vwd~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~----  132 (737)
                      |.+--|..|-.-|.|.+.|....+..+.+.   ...+..|+|++|-|.+ ..+|+.+-.+|.+.+||.....+...    
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~-~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGS-DSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCC-CceEEEEEecCceEEeeccccccCCCCccc
Confidence            455567778888899998876533222110   1235789999999986 77888888999999998753221110    


Q ss_pred             --------------CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685          133 --------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (737)
Q Consensus       133 --------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~  198 (737)
                                    ....-.|+..+.-..+.|..++|+| ++.+||+.+.||.++|||..+.+..               
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLl---------------  325 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELL---------------  325 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHH---------------
Confidence                          0001133444444566889999999 7799999999999999999876532               


Q ss_pred             eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004685          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (737)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~  253 (737)
                                ...+...+.+.|++|+|| +++|++|+.|..|.||.+...+.+..
T Consensus       326 ----------g~mkSYFGGLLCvcWSPD-GKyIvtGGEDDLVtVwSf~erRVVAR  369 (636)
T KOG2394|consen  326 ----------GVMKSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWSFEERRVVAR  369 (636)
T ss_pred             ----------HHHHhhccceEEEEEcCC-ccEEEecCCcceEEEEEeccceEEEe
Confidence                      222334578899999998 69999999999999999987765443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=9.5e-10  Score=119.94  Aligned_cols=224  Identities=11%  Similarity=0.067  Sum_probs=139.2

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECC
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD  116 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~---dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~d  116 (737)
                      ...+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+ ..+...+.+.+|+|+  |+.| ++.+.+
T Consensus       192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l-~~~~g~~~~~~~SPD--G~~la~~~~~~  267 (435)
T PRK05137        192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV-GNFPGMTFAPRFSPD--GRKVVMSLSQG  267 (435)
T ss_pred             CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee-ecCCCcccCcEECCC--CCEEEEEEecC
Confidence            344567778889999999999998887653   468999999888653 33 345667788999999  6655 566666


Q ss_pred             Cc--EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe-CCC--cEEEEEcCCCCCCCCCCCCCC
Q 004685          117 AE--VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQ  191 (737)
Q Consensus       117 g~--I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg--~I~vwdl~~~~~~~~~~~~~~  191 (737)
                      +.  |.+||+....           ...+..+........|+|++ +.|+..+ .+|  .|.++|+..+..         
T Consensus       268 g~~~Iy~~d~~~~~-----------~~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~---------  326 (435)
T PRK05137        268 GNTDIYTMDLRSGT-----------TTRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNP---------  326 (435)
T ss_pred             CCceEEEEECCCCc-----------eEEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCe---------
Confidence            66  6666776432           23344455566778999955 5554444 444  467777655431         


Q ss_pred             ccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---CcEEEEECCCCCCcccccCCCCCCCCccccc
Q 004685          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  268 (737)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  268 (737)
                                    ..+..   ....+....|+|++ +.|+....+   ..|.+||+..... ..+.             
T Consensus       327 --------------~~lt~---~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-------------  374 (435)
T PRK05137        327 --------------RRISF---GGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-RILT-------------  374 (435)
T ss_pred             --------------EEeec---CCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCce-Eecc-------------
Confidence                          11111   12234567899984 666665433   3577888754321 1110             


Q ss_pred             cccccCCCCcccceeEEEEcCCCCEEEEEeCC------CeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685          269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       269 ~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (737)
                            .+.   .+..+.|+|||++|+..+.+      ..++++|+..+.. ..+. ........+|+|.
T Consensus       375 ------~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        375 ------SGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSPL  433 (435)
T ss_pred             ------CCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence                  001   25568999999998776653      2688888866433 2222 2333455566664

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.26  E-value=4e-10  Score=108.07  Aligned_cols=181  Identities=9%  Similarity=0.164  Sum_probs=129.8

Q ss_pred             CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeecc--CCCc
Q 004685           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRR  149 (737)
Q Consensus        72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~  149 (737)
                      ..|.|||=...+++..+  ....+|.+|.+.++    .++.. ..+.|++|.....-.+         +..+..  ....
T Consensus        75 NkviIWDD~k~~~i~el--~f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~---------l~~~et~~NPkG  138 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIEL--SFNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKL---------LHVIETRSNPKG  138 (346)
T ss_pred             ceEEEEecccCcEEEEE--EeccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhh---------eeeeecccCCCc
Confidence            57999997677777776  36789999999987    44444 3678999998842211         222221  2233


Q ss_pred             eeEEEEecCCCcEEEE-EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCC
Q 004685          150 VKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP  228 (737)
Q Consensus       150 v~~l~~~p~~~~~l~s-~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  228 (737)
                      +.++.-.. +..+||. |-.-|.|.+-|+...+..                       .-...+.|...|.|++++-+ |
T Consensus       139 lC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~~~~-----------------------~p~~I~AH~s~Iacv~Ln~~-G  193 (346)
T KOG2111|consen  139 LCSLCPTS-NKSLLAFPGFKTGQVQIVDLASTKPN-----------------------APSIINAHDSDIACVALNLQ-G  193 (346)
T ss_pred             eEeecCCC-CceEEEcCCCccceEEEEEhhhcCcC-----------------------CceEEEcccCceeEEEEcCC-c
Confidence            44443333 3334443 445689999999876631                       01122468889999999997 6


Q ss_pred             cEEEEEeCCCc-EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004685          229 HLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD  307 (737)
Q Consensus       229 ~~l~t~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd  307 (737)
                      .++||+|..|+ |||||..++.++.++.                   +|.....|.+++|||+..+|++++..|+|.||.
T Consensus       194 t~vATaStkGTLIRIFdt~~g~~l~E~R-------------------RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~  254 (346)
T KOG2111|consen  194 TLVATASTKGTLIRIFDTEDGTLLQELR-------------------RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS  254 (346)
T ss_pred             cEEEEeccCcEEEEEEEcCCCcEeeeee-------------------cCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence            89999999985 8999999998887764                   333334699999999999999999999999999


Q ss_pred             cCCCC
Q 004685          308 VNHAG  312 (737)
Q Consensus       308 ~~~~~  312 (737)
                      ++...
T Consensus       255 l~~~~  259 (346)
T KOG2111|consen  255 LRDTE  259 (346)
T ss_pred             eecCC
Confidence            98743

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=1.2e-09  Score=119.05  Aligned_cols=176  Identities=9%  Similarity=0.066  Sum_probs=109.8

Q ss_pred             CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---CcEEEEecCCCCCCCCCCCCCCCceeeccCCC
Q 004685           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (737)
Q Consensus        72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (737)
                      ..|.+||..... ...+ ..+...+.+.+|+|+  ++.|+..+.+   ..|.+||+..+..           ..+.....
T Consensus       184 ~~l~i~D~~g~~-~~~l-t~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~~-----------~~l~~~~g  248 (433)
T PRK04922        184 YALQVADSDGYN-PQTI-LRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQR-----------ELVASFRG  248 (433)
T ss_pred             EEEEEECCCCCC-ceEe-ecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCCE-----------EEeccCCC
Confidence            468899986543 3445 456778999999999  6888877643   4699999975432           22222334


Q ss_pred             ceeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004685          149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (737)
Q Consensus       149 ~v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (737)
                      ...+.+|+|++..++++.+.++  .|.+||+.++...                       .+.   .+.......+|+|+
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-----------------------~lt---~~~~~~~~~~~spD  302 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-----------------------RLT---NHFGIDTEPTWAPD  302 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC
Confidence            4557899996655666666666  4888898776421                       111   11122356789998


Q ss_pred             CCcEEEEEe-CCCc--EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC--
Q 004685          227 RPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--  301 (737)
Q Consensus       227 ~~~~l~t~s-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg--  301 (737)
                      + +.|+.++ .++.  |+++|+.+++.. .+.                  ..+.   ....++|+|+|++|+..+.++  
T Consensus       303 G-~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt------------------~~g~---~~~~~~~SpDG~~Ia~~~~~~~~  359 (433)
T PRK04922        303 G-KSIYFTSDRGGRPQIYRVAASGGSAE-RLT------------------FQGN---YNARASVSPDGKKIAMVHGSGGQ  359 (433)
T ss_pred             C-CEEEEEECCCCCceEEEEECCCCCeE-Eee------------------cCCC---CccCEEECCCCCEEEEEECCCCc
Confidence            4 6666554 4454  666666554321 110                  0111   234689999999998876543  


Q ss_pred             -eEEEEEcCCC
Q 004685          302 -HVYLMDVNHA  311 (737)
Q Consensus       302 -~v~iwd~~~~  311 (737)
                       .|.+||+.++
T Consensus       360 ~~I~v~d~~~g  370 (433)
T PRK04922        360 YRIAVMDLSTG  370 (433)
T ss_pred             eeEEEEECCCC
Confidence             5888887653

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.21  E-value=7.4e-10  Score=105.62  Aligned_cols=151  Identities=13%  Similarity=0.142  Sum_probs=100.4

Q ss_pred             EEEEEeeCCCCCEEEEEEC----------CCcEEEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEE
Q 004685           97 FCTKFVPETSDELVVSGAG----------DAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWS  165 (737)
Q Consensus        97 ~~v~~sp~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s  165 (737)
                      ..+.|+|.  |++|+.-..          -+...||.++.....         ...+. ...++|.+++|+|++..+++.
T Consensus         9 ~~~~W~~~--G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---------~~~i~l~~~~~I~~~~WsP~g~~favi   77 (194)
T PF08662_consen    9 AKLHWQPS--GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---------VESIELKKEGPIHDVAWSPNGNEFAVI   77 (194)
T ss_pred             EEEEeccc--CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---------cceeeccCCCceEEEEECcCCCEEEEE
Confidence            45778888  565543322          234666766543221         23332 234579999999955444333


Q ss_pred             -EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---CcEE
Q 004685          166 -ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFAR  241 (737)
Q Consensus       166 -~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---g~i~  241 (737)
                       |..++.|.+||++...                          +...  ....++.+.|+|+ +++|++++.+   |.|.
T Consensus        78 ~g~~~~~v~lyd~~~~~--------------------------i~~~--~~~~~n~i~wsP~-G~~l~~~g~~n~~G~l~  128 (194)
T PF08662_consen   78 YGSMPAKVTLYDVKGKK--------------------------IFSF--GTQPRNTISWSPD-GRFLVLAGFGNLNGDLE  128 (194)
T ss_pred             EccCCcccEEEcCcccE--------------------------eEee--cCCCceEEEECCC-CCEEEEEEccCCCcEEE
Confidence             4467899999996221                          1111  1346688999997 6888888754   6699


Q ss_pred             EEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC------CCeEEEEEcCC
Q 004685          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNH  310 (737)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~------dg~v~iwd~~~  310 (737)
                      +||.+..+.+....                     +.  .++.++|+|+|++|+++..      |+.++||+..-
T Consensus       129 ~wd~~~~~~i~~~~---------------------~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  129 FWDVRKKKKISTFE---------------------HS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEECCCCEEeeccc---------------------cC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            99999776554432                     22  3789999999999999975      78999999863

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.19  E-value=1.4e-08  Score=97.59  Aligned_cols=185  Identities=18%  Similarity=0.284  Sum_probs=131.5

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEcccC-ccceEEEEE
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGH-SANVFCTKF  101 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~-~~~~~~~~~~~h-~~~V~~v~~  101 (737)
                      .....++.+||.+  +.+++.+|. ...+|.++.+.++  +|++.- .+.|.||... .-+.++.+.... ....  ++.
T Consensus        71 ky~pNkviIWDD~--k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGl--C~~  142 (346)
T KOG2111|consen   71 KYPPNKVIIWDDL--KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGL--CSL  142 (346)
T ss_pred             CCCCceEEEEecc--cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCce--Eee
Confidence            4467889999944  344555554 4578999999864  455554 4689999987 455566553211 2233  334


Q ss_pred             eeCCCCCEEEEE-ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc-EEEEEcCC
Q 004685          102 VPETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQ  179 (737)
Q Consensus       102 sp~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~-I~vwdl~~  179 (737)
                      .|..+..+||.- -.-|.|.|-|+.....        .+...+.+|.+.|.|++.+. .+.++||+|..|+ |++||..+
T Consensus       143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~--------~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~  213 (346)
T KOG2111|consen  143 CPTSNKSLLAFPGFKTGQVQIVDLASTKP--------NAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTED  213 (346)
T ss_pred             cCCCCceEEEcCCCccceEEEEEhhhcCc--------CCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCC
Confidence            454424455443 3469999999986332        12467889999999999998 6699999999987 78999999


Q ss_pred             CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      +..+              .+++.|.         ....|.+++|+|+ ..+||++|+.|+++||.++...
T Consensus       214 g~~l--------------~E~RRG~---------d~A~iy~iaFSp~-~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  214 GTLL--------------QELRRGV---------DRADIYCIAFSPN-SSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             CcEe--------------eeeecCC---------chheEEEEEeCCC-ccEEEEEcCCCeEEEEEeecCC
Confidence            8744              2333332         2367999999997 6899999999999999998644

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=2.6e-09  Score=109.94  Aligned_cols=255  Identities=17%  Similarity=0.193  Sum_probs=160.3

Q ss_pred             cccccccceeecccCCceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEE---------Ec----------------
Q 004685           36 LVRRLSQERELEGHQGCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKLLHS---------IE----------------   89 (737)
Q Consensus        36 ~~~~~~~~~~l~~H~~~V~~l~~s~~g~~-lasgs~dg~V~vwd~~~~~~~~~---------~~----------------   89 (737)
                      +.++.+++..|. |...-+.|..+|||++ ||||.....|++||+........         |.                
T Consensus        38 ~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR  116 (703)
T KOG2321|consen   38 YRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDR  116 (703)
T ss_pred             HHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCc
Confidence            344455555553 7788899999999986 56888899999999976432111         00                


Q ss_pred             --ccC-----------ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEe
Q 004685           90 --TGH-----------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  156 (737)
Q Consensus        90 --~~h-----------~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  156 (737)
                        ..|           ...-.+++++.-+ .++++.|+ ...|+=+++..  ++        .+..+....+.++++..+
T Consensus       117 ~IefHak~G~hy~~RIP~~GRDm~y~~~s-cDly~~gs-g~evYRlNLEq--Gr--------fL~P~~~~~~~lN~v~in  184 (703)
T KOG2321|consen  117 TIEFHAKYGRHYRTRIPKFGRDMKYHKPS-CDLYLVGS-GSEVYRLNLEQ--GR--------FLNPFETDSGELNVVSIN  184 (703)
T ss_pred             eeeehhhcCeeeeeecCcCCccccccCCC-ccEEEeec-CcceEEEEccc--cc--------cccccccccccceeeeec
Confidence              000           0111233333321 33444443 34455555554  32        256666667889999999


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC
Q 004685          157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS  236 (737)
Q Consensus       157 p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~  236 (737)
                      +-+ .+|++|+.+|.|.+||.+....+..+            +....  ..-.........|+++.|+.+ +-.+++|..
T Consensus       185 ~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l------------~~~~~--v~s~pg~~~~~svTal~F~d~-gL~~aVGts  248 (703)
T KOG2321|consen  185 EEH-GLLACGTEDGVVEFWDPRDKSRVGTL------------DAASS--VNSHPGGDAAPSVTALKFRDD-GLHVAVGTS  248 (703)
T ss_pred             Ccc-ceEEecccCceEEEecchhhhhheee------------ecccc--cCCCccccccCcceEEEecCC-ceeEEeecc
Confidence            944 78989999999999999887643111            00000  000011112345899999986 789999999


Q ss_pred             CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCcce
Q 004685          237 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAGGRA  315 (737)
Q Consensus       237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~~~~~  315 (737)
                      +|.+.|||+|+.+++..-.                   |+..- +|..+.|.+.+. --++......++|||-.+++...
T Consensus       249 ~G~v~iyDLRa~~pl~~kd-------------------h~~e~-pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~a  308 (703)
T KOG2321|consen  249 TGSVLIYDLRASKPLLVKD-------------------HGYEL-PIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMA  308 (703)
T ss_pred             CCcEEEEEcccCCceeecc-------------------cCCcc-ceeeecccccCCCceEEecchHHhhhcccccCCcee
Confidence            9999999999987654322                   22222 699999987532 23334445689999999977555


Q ss_pred             eeeecCCCCeeeeeccCCCCccCCC
Q 004685          316 MRYTVGDASKIMSFTPTLNGLELQP  340 (737)
Q Consensus       316 ~~~~~~~~~~~~~~~p~~~~~~~~~  340 (737)
                      ..... ..++.+|+-|...-+....
T Consensus       309 siEpt-~~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  309 SIEPT-SDLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             ecccc-CCcCceeeecCCceEEEec
Confidence            44443 3488888888765544433

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.17  E-value=4.7e-09  Score=100.98  Aligned_cols=270  Identities=13%  Similarity=0.100  Sum_probs=166.9

Q ss_pred             ccccccccccccccccceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC
Q 004685           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~  105 (737)
                      +..+++|+  +...+-...+..-..++.+++|||||+ .|.+..-|-.|.||.+.+.+....  +-.+..+..++|+|+ 
T Consensus        70 ~~~vqvws--l~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~--~~pK~~~kg~~f~~d-  144 (447)
T KOG4497|consen   70 DPKVQVWS--LVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL--PHPKTNVKGYAFHPD-  144 (447)
T ss_pred             cceEEEEE--eecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe--cccccCceeEEECCC-
Confidence            34566666  222333345556678899999999995 556677788999999998765543  233455688899998 


Q ss_pred             CCCEEEEEECC------------------------------------CcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004685          106 SDELVVSGAGD------------------------------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (737)
Q Consensus       106 ~~~~l~sgs~d------------------------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (737)
                       |++.+.++.-                                    ..+.+||.--           +.........-.
T Consensus       145 -g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L-----------eykv~aYe~~lG  212 (447)
T KOG4497|consen  145 -GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL-----------EYKVYAYERGLG  212 (447)
T ss_pred             -CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh-----------hheeeeeeeccc
Confidence             6766655432                                    1122232210           000001122356


Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCC-----------------------------------CCC-Ccc
Q 004685          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-----------------------------------SSH-QEC  193 (737)
Q Consensus       150 v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~-----------------------------------~~~-~~~  193 (737)
                      +..++|+| .+++|+.|+.|+++++.+--+.+......                                   ..+ ...
T Consensus       213 ~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~  291 (447)
T KOG4497|consen  213 LKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEE  291 (447)
T ss_pred             eeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcccc
Confidence            78899999 56999999999999987654433321000                                   000 000


Q ss_pred             ceEEEeccC-----CceeeccCCCCCccceEEEEEecCCCcEEEEEeCC--CcEEEEECCCCCCcccccCCCCCCCCccc
Q 004685          194 RNILLDLRC-----GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD--AFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (737)
Q Consensus       194 ~~~~~~~~~-----~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (737)
                      ....+....     ...+.....+.....+.-++|+++ ..+++|-.+.  +.+.+||++..+....+..          
T Consensus       292 se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D-s~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ----------  360 (447)
T KOG4497|consen  292 SETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD-STYAATRNDKYPNALWLWDLQNLKLHAVLIQ----------  360 (447)
T ss_pred             chhhhhhhhcceeeecccCCCCCCCcccccceeeecCC-ceEEeeecCCCCceEEEEechhhhhhhhhhh----------
Confidence            000010000     001111223344567788999997 4677776543  6799999998765444321          


Q ss_pred             cccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004685          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (737)
Q Consensus       267 ~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  338 (737)
                                  ..+|....|+|....|+.+.....+++|...- .........|..+..++|+..+.-+..
T Consensus       361 ------------k~piraf~WdP~~prL~vctg~srLY~W~psg-~~~V~vP~~GF~i~~l~W~~~g~~i~l  419 (447)
T KOG4497|consen  361 ------------KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-PRVVGVPKKGFNIQKLQWLQPGEFIVL  419 (447)
T ss_pred             ------------ccceeEEEeCCCCceEEEEcCCceEEEEcCCC-ceEEecCCCCceeeeEEecCCCcEEEE
Confidence                        12599999999999999999999999998765 444455556777888888876655443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=9.3e-10  Score=107.15  Aligned_cols=199  Identities=10%  Similarity=0.059  Sum_probs=137.9

Q ss_pred             ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeCCCc
Q 004685           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGT  171 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~Dg~  171 (737)
                      +..+..++|++.  -..++++..|-.|++|+-....           ...++ .....|+|++|.|.....|+.|+.. .
T Consensus        98 ~~dlr~~aWhqH--~~~fava~nddvVriy~ksst~-----------pt~Lks~sQrnvtclawRPlsaselavgCr~-g  163 (445)
T KOG2139|consen   98 EIDLRGVAWHQH--IIAFAVATNDDVVRIYDKSSTC-----------PTKLKSVSQRNVTCLAWRPLSASELAVGCRA-G  163 (445)
T ss_pred             hcceeeEeechh--hhhhhhhccCcEEEEeccCCCC-----------CceecchhhcceeEEEeccCCcceeeeeecc-e
Confidence            355788999997  5788999999999999987511           12222 2356799999999888889888874 5


Q ss_pred             EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCcEEEEECCCCCC
Q 004685          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPP  250 (737)
Q Consensus       172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~i~iwd~~~~~~  250 (737)
                      |.+|.............           +-......+...++| ..|++++|++++ ..+++++ .|..|+|||..++..
T Consensus       164 IciW~~s~tln~~r~~~-----------~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~  230 (445)
T KOG2139|consen  164 ICIWSDSRTLNANRNIR-----------MMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQK  230 (445)
T ss_pred             eEEEEcCcccccccccc-----------cccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCc
Confidence            99998765433211100           001112234445555 789999999984 6677766 567899999987763


Q ss_pred             cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCcceeeeecCCCCeeeee
Q 004685          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN-HAGGRAMRYTVGDASKIMSF  329 (737)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~  329 (737)
                      +...                   ..  ..+.++-+.|||||.+|++++-|+..++|+.. +........+.+ .+...+|
T Consensus       231 ~pL~-------------------~~--glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacW  288 (445)
T KOG2139|consen  231 IPLI-------------------PK--GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACW  288 (445)
T ss_pred             cccc-------------------cc--CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeee
Confidence            3211                   01  11248889999999999999999999999544 433444444445 8888999


Q ss_pred             ccCCCCccCCC
Q 004685          330 TPTLNGLELQP  340 (737)
Q Consensus       330 ~p~~~~~~~~~  340 (737)
                      +|.+..+.+..
T Consensus       289 spcGsfLLf~~  299 (445)
T KOG2139|consen  289 SPCGSFLLFAC  299 (445)
T ss_pred             cCCCCEEEEEE
Confidence            99887665544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=6.6e-09  Score=112.80  Aligned_cols=178  Identities=12%  Similarity=0.085  Sum_probs=106.5

Q ss_pred             CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---CcEEEEecCCCCCCCCCCCCCCCceeeccCCC
Q 004685           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (737)
Q Consensus        72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (737)
                      ..|.++|... .....+ ..+...+.+.+|+|+  ++.|+..+.+   ..|.+||+..+..           ..+.....
T Consensus       176 ~~L~~~D~dG-~~~~~l-~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~~-----------~~l~~~~g  240 (427)
T PRK02889        176 YQLQISDADG-QNAQSA-LSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGRR-----------RVVANFKG  240 (427)
T ss_pred             cEEEEECCCC-CCceEe-ccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCCE-----------EEeecCCC
Confidence            4577777643 333444 457788999999999  6888776643   4599999986432           22222334


Q ss_pred             ceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCC
Q 004685          149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP  228 (737)
Q Consensus       149 ~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  228 (737)
                      .+...+|+|++..++++.+.++...+|.+......                     ...+.   .+........|+|++ 
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------------------~~~lt---~~~~~~~~~~wSpDG-  295 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---------------------LRRLT---QSSGIDTEPFFSPDG-  295 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCC---------------------cEECC---CCCCCCcCeEEcCCC-
Confidence            55689999966555567788888777765432100                     01111   112234557899984 


Q ss_pred             cEEEEEe-CCCcEEEEECC--CCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC---e
Q 004685          229 HLLLVGG-SDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---H  302 (737)
Q Consensus       229 ~~l~t~s-~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg---~  302 (737)
                      +.|+..+ .++...+|.+.  .+.. ..+.           +       .+.   .....+|+|+|++|+..+.++   .
T Consensus       296 ~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt-----------~-------~g~---~~~~~~~SpDG~~Ia~~s~~~g~~~  353 (427)
T PRK02889        296 RSIYFTSDRGGAPQIYRMPASGGAA-QRVT-----------F-------TGS---YNTSPRISPDGKLLAYISRVGGAFK  353 (427)
T ss_pred             CEEEEEecCCCCcEEEEEECCCCce-EEEe-----------c-------CCC---CcCceEECCCCCEEEEEEccCCcEE
Confidence            5555444 45666677654  3221 1100           0       111   134578999999998877654   5


Q ss_pred             EEEEEcCCC
Q 004685          303 VYLMDVNHA  311 (737)
Q Consensus       303 v~iwd~~~~  311 (737)
                      |++||+.++
T Consensus       354 I~v~d~~~g  362 (427)
T PRK02889        354 LYVQDLATG  362 (427)
T ss_pred             EEEEECCCC
Confidence            888887663

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.15  E-value=2.6e-09  Score=101.94  Aligned_cols=148  Identities=14%  Similarity=0.202  Sum_probs=100.8

Q ss_pred             EEEEcCCCCEEEEEeC----------CCcEEEEECCC-CeEEEEEcccCccceEEEEEeeCCCCCEEEE--EECCCcEEE
Q 004685           55 AISWNSKGSLLISGSD----------DTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVS--GAGDAEVRL  121 (737)
Q Consensus        55 ~l~~s~~g~~lasgs~----------dg~V~vwd~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s--gs~dg~I~i  121 (737)
                      .|.|+++|++|+.-..          -+...||.++. ......+.....++|.+++|+|+  ++.|+.  |..++.|.+
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC--CCEEEEEEccCCcccEE
Confidence            5889999987664322          13355665532 23344442334567999999999  576544  446789999


Q ss_pred             EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC---CcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D---g~I~vwdl~~~~~~~~~~~~~~~~~~~~~  198 (737)
                      ||++.           +++..+  +...+..+.|+| ++++|++++.+   |.|.+||+++.+.+               
T Consensus        88 yd~~~-----------~~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i---------------  138 (194)
T PF08662_consen   88 YDVKG-----------KKIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKI---------------  138 (194)
T ss_pred             EcCcc-----------cEeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEe---------------
Confidence            99972           224444  356778999999 66888887643   66999999976532               


Q ss_pred             eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC------CCcEEEEECC
Q 004685          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRR  246 (737)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~------Dg~i~iwd~~  246 (737)
                                ... . ...+..++|+|+ +++|+++..      |+.++||+..
T Consensus       139 ----------~~~-~-~~~~t~~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  139 ----------STF-E-HSDATDVEWSPD-GRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             ----------ecc-c-cCcEEEEEEcCC-CCEEEEEEeccceeccccEEEEEec
Confidence                      111 1 234689999998 578888764      7889999985

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.13  E-value=2.9e-09  Score=101.16  Aligned_cols=230  Identities=13%  Similarity=0.178  Sum_probs=160.6

Q ss_pred             cccccccccccccccceeec-ccCCceEEEEEcC---CCC-EEEEEeCCCcEEEEECCCCeEEEEEccc-----CccceE
Q 004685           28 HSLQMHSSLVRRLSQERELE-GHQGCVNAISWNS---KGS-LLISGSDDTHINVWSYSSRKLLHSIETG-----HSANVF   97 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~s~---~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~-----h~~~V~   97 (737)
                      +++-+|+..-.+..+..+++ --+..+..|.|+.   +|. .|+-+..+|.|.++..........+..-     ......
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l  125 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL  125 (339)
T ss_pred             cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence            44555553333333333333 2346788888875   455 6677888899999988765554444211     112356


Q ss_pred             EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004685           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (737)
Q Consensus        98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl  177 (737)
                      ++.|++.  +..++++-.+|.+.+-+.....        .+.++.++.|.-.+.-.+|+..+++++++|+.|+.+..||+
T Consensus       126 slD~~~~--~~~i~vs~s~G~~~~v~~t~~~--------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~  195 (339)
T KOG0280|consen  126 SLDISTS--GTKIFVSDSRGSISGVYETEMV--------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI  195 (339)
T ss_pred             EEEeecc--CceEEEEcCCCcEEEEecceee--------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence            7889888  6788888889999855544322        23466889999999999999888899999999999999999


Q ss_pred             CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccC
Q 004685          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQK  256 (737)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~  256 (737)
                      |....             .          .......|...|.+|.-+|..+..++||+.|..|++||.|+ ++++..-  
T Consensus       196 R~p~~-------------~----------i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~--  250 (339)
T KOG0280|consen  196 RIPKT-------------F----------IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA--  250 (339)
T ss_pred             cCCcc-------------e----------eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC--
Confidence            94331             1          12223457788999999998889999999999999999994 4443221  


Q ss_pred             CCCCCCCccccccccccCCCCcccceeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCC
Q 004685          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g-~~l~~g~~dg~v~iwd~~~~~  312 (737)
                                          .-++.|+.+.++|.- ..|++++.-+.++|-+.....
T Consensus       251 --------------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~  287 (339)
T KOG0280|consen  251 --------------------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV  287 (339)
T ss_pred             --------------------ccccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence                                112359999999953 345666666677787777644

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.12  E-value=1.7e-10  Score=115.69  Aligned_cols=206  Identities=16%  Similarity=0.141  Sum_probs=151.3

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      +.-++-++.| ..|..|.|-|.--+|++++..|.++--|+.+|+.+..+ ....+.+..++-+|.  ...+-.|..+|+|
T Consensus       200 GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~-~t~~G~~~vm~qNP~--NaVih~GhsnGtV  275 (545)
T KOG1272|consen  200 GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI-RTGAGRTDVMKQNPY--NAVIHLGHSNGTV  275 (545)
T ss_pred             CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHH-HccCCccchhhcCCc--cceEEEcCCCceE
Confidence            3444555555 57889999999899999999999999999999999988 667788999999998  5888999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      .+|.....          +|+..+..|.++|.+|++.+ ++++++|.+.|..++|||++....+..              
T Consensus       276 SlWSP~sk----------ePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t--------------  330 (545)
T KOG1272|consen  276 SLWSPNSK----------EPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHT--------------  330 (545)
T ss_pred             EecCCCCc----------chHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccce--------------
Confidence            99998752          45788889999999999999 779999999999999999998763310              


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEE-CCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD-RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                              +.   . ......++||..  .+|| .+....+.||. .-.+..            +.......|.    . 
T Consensus       331 --------~~---t-p~~a~~ls~Sqk--glLA-~~~G~~v~iw~d~~~~s~------------~~~~pYm~H~----~-  378 (545)
T KOG1272|consen  331 --------YR---T-PHPASNLSLSQK--GLLA-LSYGDHVQIWKDALKGSG------------HGETPYMNHR----C-  378 (545)
T ss_pred             --------ee---c-CCCccccccccc--ccee-eecCCeeeeehhhhcCCC------------CCCcchhhhc----c-
Confidence                    00   0 234556777753  2444 44556788994 222111            0000001111    1 


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004685          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iw  306 (737)
                      ..+|..+.|.|-...|-+|...|.-.+.
T Consensus       379 ~~~V~~l~FcP~EDvLGIGH~~G~tsil  406 (545)
T KOG1272|consen  379 GGPVEDLRFCPYEDVLGIGHAGGITSIL  406 (545)
T ss_pred             CcccccceeccHHHeeeccccCCceeEe
Confidence            2269999999988888888776654443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.11  E-value=2.4e-09  Score=117.89  Aligned_cols=77  Identities=16%  Similarity=0.148  Sum_probs=64.6

Q ss_pred             EeeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCC-CceEEEEecCCCCeEEEEecCCcEEEEc
Q 004685          619 YVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVATSGIDNTIKIWT  697 (737)
Q Consensus       619 ~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~-~~V~~v~~sp~~~~l~S~~~Dg~i~lW~  697 (737)
                      -.||..+++.+.    |.|.  +++|+++|.++++|+. .+..+..+.+|. +.|+.++..+....++|+|.||.+++|+
T Consensus       214 ~fgHsaRvw~~~----~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  214 GFGHSARVWACC----FLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             cccccceeEEEE----eccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            457888887444    6777  9999999999999955 455566999995 5799999999999999999999999999


Q ss_pred             CCCCC
Q 004685          698 PSASV  702 (737)
Q Consensus       698 ~~~~~  702 (737)
                      +...-
T Consensus       287 l~~r~  291 (967)
T KOG0974|consen  287 LNGRG  291 (967)
T ss_pred             hhccc
Confidence            87653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.10  E-value=2e-09  Score=110.76  Aligned_cols=194  Identities=15%  Similarity=0.204  Sum_probs=142.2

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeec
Q 004685           65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ  144 (737)
Q Consensus        65 lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  144 (737)
                      |..++....|.-++++.|..+..| ....+.+++|..++.  -.+|++|+.+|.|-.||.+.......    ........
T Consensus       148 ly~~gsg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~----l~~~~~v~  220 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGT----LDAASSVN  220 (703)
T ss_pred             EEEeecCcceEEEEcccccccccc-ccccccceeeeecCc--cceEEecccCceEEEecchhhhhhee----eecccccC
Confidence            334444457888899999998888 566789999999998  47899999999999999986432111    01111222


Q ss_pred             cCC-----CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceE
Q 004685          145 CHT-----RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  219 (737)
Q Consensus       145 ~h~-----~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (737)
                      .|.     ..|+++.|+. ++-.+++|+.+|.+.+||++..++.                        +........+|.
T Consensus       221 s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl------------------------~~kdh~~e~pi~  275 (703)
T KOG2321|consen  221 SHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPL------------------------LVKDHGYELPIK  275 (703)
T ss_pred             CCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCce------------------------eecccCCcccee
Confidence            233     3499999987 5788999999999999999998754                        222233456788


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC
Q 004685          220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (737)
Q Consensus       220 ~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~  299 (737)
                      .+.|.+.+.+--++......++|||-.++++...+..                      ...++.+|+-|++.++++|..
T Consensus       276 ~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp----------------------t~~lND~C~~p~sGm~f~Ane  333 (703)
T KOG2321|consen  276 KLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP----------------------TSDLNDFCFVPGSGMFFTANE  333 (703)
T ss_pred             eecccccCCCceEEecchHHhhhcccccCCceeeccc----------------------cCCcCceeeecCCceEEEecC
Confidence            8889776444444555678999999999987765531                      114889999999999999999


Q ss_pred             CCeEEEEEcCCCC
Q 004685          300 GEHVYLMDVNHAG  312 (737)
Q Consensus       300 dg~v~iwd~~~~~  312 (737)
                      ++.+..|=+...+
T Consensus       334 ~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  334 SSKMHTYYIPSLG  346 (703)
T ss_pred             CCcceeEEccccC
Confidence            8887777666543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=7.1e-08  Score=99.74  Aligned_cols=223  Identities=12%  Similarity=0.189  Sum_probs=132.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEE-----ECC-----CcE
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-----AGD-----AEV  119 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg-----s~d-----g~I  119 (737)
                      ..+++..+++++|+++|.+.. ..++|++..++..+.+..  -. .+.++.|+|.  +.+|.+=     ..+     --+
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~--~~-~~~~L~fSP~--g~yL~T~e~~~i~~~~~~~~pn~  107 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVE--LK-KTYDLLFSPK--GNYLLTWEPWAIYGPKNASNPNV  107 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEec--cc-eeeeeeeccc--ccccccccccccccCCCCCCCce
Confidence            345778889999998887754 689999999886544442  22 7899999998  6777652     112     236


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      .+|++.+....         ....+..... ++..|+.+. . ++.--..+.+++|++...+.+                
T Consensus       108 ~v~~vet~~~~---------s~~q~k~Q~~-W~~qfs~dE-s-l~arlv~nev~f~~~~~f~~~----------------  159 (566)
T KOG2315|consen  108 LVYNVETGVQR---------SQIQKKMQNG-WVPQFSIDE-S-LAARLVSNEVQFYDLGSFKTI----------------  159 (566)
T ss_pred             eeeeeccceeh---------hheehhhhcC-cccccccch-h-hhhhhhcceEEEEecCCccce----------------
Confidence            68888762111         1111112221 578888743 3 333334567999998875422                


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecC-CCcEEEE-----EeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLV-----GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~t-----~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (737)
                                ..+.+...++.+.++|. .+..+|+     .+.-+.|+||......+...+        ..+.|.     
T Consensus       160 ----------~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~--------a~ksFF-----  216 (566)
T KOG2315|consen  160 ----------QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV--------ANKSFF-----  216 (566)
T ss_pred             ----------eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh--------hhcccc-----
Confidence                      11123456788888886 3334443     355678999987632211111        011110     


Q ss_pred             CCCCcccceeEEEEcCCCCE-EE-EEeC-C---------CeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCC
Q 004685          274 EHGRSSLHLTHVTFSPNGEE-VL-LSYS-G---------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG  335 (737)
Q Consensus       274 ~~~~~~~~i~~v~~sp~g~~-l~-~g~~-d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~  335 (737)
                           ...-..+.|.+-|.- |+ +.+. |         ..+++.+++ +...........++..++|+|+...
T Consensus       217 -----kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~E  284 (566)
T KOG2315|consen  217 -----KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGRE  284 (566)
T ss_pred             -----ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCE
Confidence                 111334678775542 22 2222 3         368888888 4555566666899999999997543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.07  E-value=9.7e-08  Score=97.51  Aligned_cols=230  Identities=13%  Similarity=0.148  Sum_probs=143.3

Q ss_pred             eecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc------
Q 004685           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE------  118 (737)
Q Consensus        45 ~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~------  118 (737)
                      .+..-.-++..++|||.|.+|++.... .|.+|+-..+..+..+   ....|..+.|+|.  +.+|++=+..+.      
T Consensus        27 ~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~---~~~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e  100 (561)
T COG5354          27 RFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF---RHPDVKYLDFSPN--EKYLVTWSREPIIEPEIE  100 (561)
T ss_pred             cccccCcchhheeecCcchheehhhcc-ceEEccccchhheeee---ecCCceecccCcc--cceeeeeccCCccChhhc
Confidence            333355688999999999999988764 6899998877655555   2356899999999  799988765444      


Q ss_pred             ---------EEEEecCCCCCCCCCCCCCCCceeeccCCCc--ee-EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 004685          119 ---------VRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (737)
Q Consensus       119 ---------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~  186 (737)
                               +.+||+..+..          +..+.....+  .. -+.|+.++ .+++-. ....++++++ +....   
T Consensus       101 ~sp~~~~n~~~vwd~~sg~i----------v~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~---  164 (561)
T COG5354         101 ISPFTSKNNVFVWDIASGMI----------VFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIE---  164 (561)
T ss_pred             cCCccccCceeEEeccCcee----------EeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccc---
Confidence                     89999986432          4444444333  33 56777744 555443 3357999997 33211   


Q ss_pred             CCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC-CCcEEEE-----EeCCCcEEEEECCCCCCcccccCCCCC
Q 004685          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLV-----GGSDAFARLYDRRMLPPLTSCQKRMSP  260 (737)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~t-----~s~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (737)
                                          ...........+....|+|. +...||.     .+.++.+++|.+.....+..-      
T Consensus       165 --------------------~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk------  218 (561)
T COG5354         165 --------------------EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK------  218 (561)
T ss_pred             --------------------cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee------
Confidence                                00000111345667777775 2223332     466788999998755433221      


Q ss_pred             CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-----------CCeEEEEEcCCCCcceeeeecCCCCeeeee
Q 004685          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSF  329 (737)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  329 (737)
                           .+     ..  -   .=..+.|.+.|.+|+.-..           ...++++++.... ........+++..++|
T Consensus       219 -----~l-----fk--~---~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W  282 (561)
T COG5354         219 -----NL-----FK--V---SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTW  282 (561)
T ss_pred             -----ee-----Ee--e---cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeee
Confidence                 00     00  0   1224778898888665422           2468899988533 3333366889999999


Q ss_pred             ccCCCCccC
Q 004685          330 TPTLNGLEL  338 (737)
Q Consensus       330 ~p~~~~~~~  338 (737)
                      .|.....+.
T Consensus       283 ~p~S~~F~v  291 (561)
T COG5354         283 EPLSSRFAV  291 (561)
T ss_pred             cccCCceeE
Confidence            997654433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.05  E-value=1.4e-08  Score=106.88  Aligned_cols=189  Identities=12%  Similarity=0.134  Sum_probs=119.2

Q ss_pred             cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC
Q 004685           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~  105 (737)
                      ..+++.+-+  ..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.++. . .....+++++++ 
T Consensus        14 ~~~~v~viD--~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~-~-G~~~~~i~~s~D-   88 (369)
T PF02239_consen   14 GSGSVAVID--GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK-V-GGNPRGIAVSPD-   88 (369)
T ss_dssp             GGTEEEEEE--TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--T-
T ss_pred             CCCEEEEEE--CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe-c-CCCcceEEEcCC-
Confidence            345666666  55677788887654444457899999999999999999999999999999984 3 345688999999 


Q ss_pred             CCCEEEEE-ECCCcEEEEecCCCCCCCCCCCCCCCceeecc-------CCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004685          106 SDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (737)
Q Consensus       106 ~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl  177 (737)
                       |.+++++ ...+.+.++|..+.+          ++..+..       ....+..+..+|....++++.-..+.|.+.|.
T Consensus        89 -G~~~~v~n~~~~~v~v~D~~tle----------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen   89 -GKYVYVANYEPGTVSVIDAETLE----------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             -TTEEEEEEEETTEEEEEETTT------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred             -CCEEEEEecCCCceeEecccccc----------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence             6877665 468999999988632          2333322       23467788888855445545444577877787


Q ss_pred             CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004685          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (737)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~  254 (737)
                      ...+..            ....+            ..........|+|++..++++...+..|-++|..+++.+..+
T Consensus       158 ~d~~~~------------~~~~i------------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  158 SDPKNL------------KVTTI------------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI  210 (369)
T ss_dssp             TTSSCE------------EEEEE------------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             cccccc------------ceeee------------cccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence            665321            00000            012345678999975334455567789999999987765443

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.05  E-value=2.8e-08  Score=108.32  Aligned_cols=201  Identities=12%  Similarity=0.091  Sum_probs=124.8

Q ss_pred             ceeecccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEE-EEECCC-
Q 004685           43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA-  117 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~-sgs~dg-  117 (737)
                      .+.+..+...+.+.+|+|||++|+.+..+   ..|.+||+.+++....  ..+...+.+++|+|+  +..|+ +.+.++ 
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spD--g~~l~~~~~~~~~  257 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPD--GSKLAVSLSKDGN  257 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCC--CCEEEEEECCCCC
Confidence            45566677789999999999999877643   4799999998865432  235556778999999  56554 555544 


Q ss_pred             -cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccc
Q 004685          118 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       118 -~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                       .|++|++....           ...+..+........|+|++..++++...++  .|.++|+.+++..           
T Consensus       258 ~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-----------  315 (417)
T TIGR02800       258 PDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-----------  315 (417)
T ss_pred             ccEEEEECCCCC-----------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence             58888887532           2223334444556789995544444444444  4666676554311           


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC---cEEEEECCCCCCcccccCCCCCCCCcccccccc
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (737)
                                  .+.   .+........|+|+ +++++.++.++   .|.+||+.++.. ..+.                
T Consensus       316 ------------~l~---~~~~~~~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~----------------  362 (417)
T TIGR02800       316 ------------RLT---FRGGYNASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGE-RVLT----------------  362 (417)
T ss_pred             ------------Eee---cCCCCccCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCe-EEcc----------------
Confidence                        111   01234456789997 46777777665   788888876431 1110                


Q ss_pred             ccCCCCcccceeEEEEcCCCCEEEEEeCCC---eEEEEEc
Q 004685          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDV  308 (737)
Q Consensus       272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg---~v~iwd~  308 (737)
                         . ..  ......|+|+|++|+.++.++   .+++.+.
T Consensus       363 ---~-~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       363 ---D-TG--LDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             ---C-CC--CCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence               0 00  123458999999998887754   3555553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.05  E-value=5.2e-09  Score=101.47  Aligned_cols=245  Identities=18%  Similarity=0.186  Sum_probs=176.0

Q ss_pred             cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC
Q 004685           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (737)
Q Consensus        38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d  116 (737)
                      .++.....++||.+.|++...-|..+-+++.+.|.++|||- .+.++.-..+......+++++++.++  -..|+.|-.+
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e--~~~L~vg~~n   89 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE--SRRLYVGQDN   89 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc--ceEEEEEEec
Confidence            55666778999999999988888888899999999999994 45566655554456788999999998  4889999999


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC----------
Q 004685          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA----------  186 (737)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~----------  186 (737)
                      |++.-+.+..--      ++....+....|...+..+.|+- ....+++.+.|..+..--.+.+......          
T Consensus        90 gtvtefs~sedf------nkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~  162 (404)
T KOG1409|consen   90 GTVTEFALSEDF------NKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ  162 (404)
T ss_pred             ceEEEEEhhhhh------hhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence            999988776421      11234566678999999999987 5578889999987776555554432100          


Q ss_pred             ------CCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004685          187 ------GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (737)
Q Consensus       187 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (737)
                            ..+..........+.......+....+|...+.+++|.|. ..++.+|..|..+.+||+...+-+.-       
T Consensus       163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~-------  234 (404)
T KOG1409|consen  163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAY-------  234 (404)
T ss_pred             eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcceee-------
Confidence                  0001111111122222233445567789999999999997 57999999999999999975432111       


Q ss_pred             CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                                  ...+|.. .|..+..-+--+.+++++.||.|.+||++...
T Consensus       235 ------------el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  235 ------------ELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             ------------eeccchh-hhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence                        1123433 47777777778889999999999999998743

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.04  E-value=1.7e-09  Score=114.11  Aligned_cols=231  Identities=15%  Similarity=0.175  Sum_probs=154.3

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      .+++.++.++|.|+-+|.++.-| +.+.|+..- ....-+...-.-.|-.+.|+|..-..+-+.......-.+|++....
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            46788999999999999888765 455676543 2222221112345778899987544566666666777899998655


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                      .+.       ....+.+|+..|+.+-|+|+.+.++++++.|-.+..||++.....                        +
T Consensus       103 ~~a-------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p------------------------~  151 (1081)
T KOG0309|consen  103 SNA-------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP------------------------F  151 (1081)
T ss_pred             ccc-------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc------------------------e
Confidence            432       245677899999999999999999999999999999999987532                        1


Q ss_pred             cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC-cccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                      .....-......++|+-.++. +++.+....|++||++.+.. +..+                    .+|.. .|..++|
T Consensus       152 ys~~~w~s~asqVkwnyk~p~-vlasshg~~i~vwd~r~gs~pl~s~--------------------K~~vs-~vn~~~f  209 (1081)
T KOG0309|consen  152 YSTSSWRSAASQVKWNYKDPN-VLASSHGNDIFVWDLRKGSTPLCSL--------------------KGHVS-SVNSIDF  209 (1081)
T ss_pred             eeeecccccCceeeecccCcc-hhhhccCCceEEEeccCCCcceEEe--------------------cccce-eeehHHH
Confidence            111111234456788877664 44556678899999997652 2111                    11222 3777777


Q ss_pred             cC-CCCEEEEEeCCCeEEEEEcCCCCcc-eeeeecCCCCeeeeeccCCC
Q 004685          288 SP-NGEEVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTLN  334 (737)
Q Consensus       288 sp-~g~~l~~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~p~~~  334 (737)
                      .. ....+.+.+.|++|.+||....... ........++.--+|.|.+.
T Consensus       210 nr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  210 NRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             hhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence            75 3345888899999999999875532 23334455555555555443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.04  E-value=7.3e-09  Score=114.24  Aligned_cols=193  Identities=10%  Similarity=0.111  Sum_probs=148.2

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccce--EE---EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC
Q 004685           57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV--FC---TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (737)
Q Consensus        57 ~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V--~~---v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~  131 (737)
                      .+.-+..+++.+..+..+.+||...+.....+.  +...+  .+   +-++++  .-++++|+.-+.|.+|+... +.  
T Consensus        94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~-dn--  166 (967)
T KOG0974|consen   94 KLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHE-DN--  166 (967)
T ss_pred             chhhhcceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCc--EEEEEeccccccEEEEeccc-cC--
Confidence            333456678888899999999998877666652  22221  12   234444  45788999999999999983 21  


Q ss_pred             CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004685          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (737)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (737)
                            . -..+.+|.+.|.++.++- ++.++++.|.|+++++|++.+.+...                        ...
T Consensus       167 ------~-p~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------~~~  214 (967)
T KOG0974|consen  167 ------K-PIRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLG------------------------CTG  214 (967)
T ss_pred             ------C-cceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccC------------------------ccc
Confidence                  1 225789999999999998 67999999999999999999987441                        223


Q ss_pred             CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC
Q 004685          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (737)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g  291 (737)
                      -+|...+..++|.|.   .+++++.|.++++|+.+..+. ..+                    .+|.+..|..++..++.
T Consensus       215 fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l-~~y--------------------~~h~g~~iw~~~~~~~~  270 (967)
T KOG0974|consen  215 FGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQL-EVY--------------------DEHSGKGIWKIAVPIGV  270 (967)
T ss_pred             ccccceeEEEEeccc---eeEEeccceEEEEEeccccee-hhh--------------------hhhhhcceeEEEEcCCc
Confidence            367889999999984   999999999999997653321 111                    34666679999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCCC
Q 004685          292 EEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       292 ~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      ..+++++.|+.+++|++....
T Consensus       271 ~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  271 IIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             eEEEeeccCcchhhhhhhccc
Confidence            999999999999999988743

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=3.5e-08  Score=107.54  Aligned_cols=222  Identities=12%  Similarity=0.088  Sum_probs=126.0

Q ss_pred             eecccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEE-EEECCCc--
Q 004685           45 ELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDAE--  118 (737)
Q Consensus        45 ~l~~H~~~V~~l~~s~~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~-sgs~dg~--  118 (737)
                      .+..+...+.+..|+|||+.|+..+.+   ..|.+||+.+++... + ..........+|+|+  ++.|+ +.+.++.  
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-l-t~~~g~~~~~~wSPD--G~~La~~~~~~g~~~  287 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-V-TSFPGINGAPRFSPD--GKKLALVLSKDGQPE  287 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-e-cCCCCCcCCeeECCC--CCEEEEEEeCCCCeE
Confidence            344455678889999999988876532   358889998876432 2 122333457899999  56554 5666776  


Q ss_pred             EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCCCCCCccceE
Q 004685          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNI  196 (737)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~--I~vwdl~~~~~~~~~~~~~~~~~~~  196 (737)
                      |.++|+..+.           ...+..+........|+|++..++++...++.  |.++|+.+++.              
T Consensus       288 Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--------------  342 (448)
T PRK04792        288 IYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--------------  342 (448)
T ss_pred             EEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--------------
Confidence            6666765422           23333344556778999965545555544554  55556655431              


Q ss_pred             EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCc--EEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004685          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (737)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (737)
                               ..+.. ..  ......+|+|++ +.|+..+ .++.  |.++|+.++... .+.                  
T Consensus       343 ---------~~Lt~-~g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt------------------  390 (448)
T PRK04792        343 ---------SRLTF-EG--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQ-VLT------------------  390 (448)
T ss_pred             ---------EEEec-CC--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCeE-Ecc------------------
Confidence                     11110 01  112346899985 5555544 3443  555677655421 110                  


Q ss_pred             CCCCcccceeEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685          274 EHGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       274 ~~~~~~~~i~~v~~sp~g~~l~~g~~d-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (737)
                      .. .   ......|+|+|++|+..+.+ +  .+++++.. +................+|+|.
T Consensus       391 ~~-~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        391 ST-R---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CC-C---CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            00 0   01234799999998877663 3  47777764 3433333333344556667763

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=4.7e-08  Score=106.77  Aligned_cols=224  Identities=13%  Similarity=0.079  Sum_probs=132.1

Q ss_pred             ceeecccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEE-EEECCC-
Q 004685           43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA-  117 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~-sgs~dg-  117 (737)
                      .+.+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++... + ......+...+|+|+  |+.|+ +...+| 
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpD--G~~la~~~~~~g~  266 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPD--GSKLAFVLSKDGN  266 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCC--CCEEEEEEccCCC
Confidence            34555677789999999999988876543   468999998886543 3 223344567899999  67665 555555 


Q ss_pred             -cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccc
Q 004685          118 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       118 -~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                       .|.+||+....           ...+..+........|+|++..++++...++  .|.++|+.+++..           
T Consensus       267 ~~Iy~~d~~~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-----------  324 (430)
T PRK00178        267 PEIYVMDLASRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-----------  324 (430)
T ss_pred             ceEEEEECCCCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence             57777887532           2233334445667889996555555554444  4666666555411           


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC-CC--cEEEEECCCCCCcccccCCCCCCCCcccccccc
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (737)
                                  .+... .  .......|+|++ +.++..+. ++  .|.+||+.+++.. .+.                
T Consensus       325 ------------~lt~~-~--~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt----------------  371 (430)
T PRK00178        325 ------------RVTFV-G--NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSVR-ILT----------------  371 (430)
T ss_pred             ------------EeecC-C--CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCEE-Ecc----------------
Confidence                        11100 0  112346799975 56665543 33  5788888765421 110                


Q ss_pred             ccCCCCcccceeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (737)
                         ...   ......|+|+|++++..+.+   ..++++++.. .....+......+...+|+|.
T Consensus       372 ---~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        372 ---DTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ---CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence               000   11235899999999887763   3577777753 222222223334555666664

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=3.1e-08  Score=108.06  Aligned_cols=203  Identities=15%  Similarity=0.150  Sum_probs=129.4

Q ss_pred             CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---CCcEEEEecCCCCCCCCCCCCCCCceeeccCCC
Q 004685           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (737)
Q Consensus        72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (737)
                      ..|.+||.+... ...+ ..|...+.+.+|+|+  |+.|+..+.   +..|.+||+..+.           ...+..+..
T Consensus       182 ~~l~~~d~dg~~-~~~l-t~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g  246 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYL-TDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPG  246 (435)
T ss_pred             eEEEEECCCCCC-cEEE-ecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCC
Confidence            378889986544 3445 467889999999999  688777653   4689999997543           223344556


Q ss_pred             ceeEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004685          149 RVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (737)
Q Consensus       149 ~v~~l~~~p~~~~~l~s~s~Dg~--I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (737)
                      .+...+|+|++..++++.+.++.  |.+||+.++...                       .+.   .+........|+|+
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~Lt---~~~~~~~~~~~spD  300 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-----------------------RLT---DSPAIDTSPSYSPD  300 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-----------------------Ecc---CCCCccCceeEcCC
Confidence            67789999966556667777665  666687765421                       111   12223456799998


Q ss_pred             CCcEEEEEe-CCC--cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---
Q 004685          227 RPHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---  300 (737)
Q Consensus       227 ~~~~l~t~s-~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---  300 (737)
                       ++.|+..+ .++  .|++||+..+... .+.                   . . ...+....|+|+|++|+....+   
T Consensus       301 -G~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt-------------------~-~-~~~~~~~~~SpdG~~ia~~~~~~~~  357 (435)
T PRK05137        301 -GSQIVFESDRSGSPQLYVMNADGSNPR-RIS-------------------F-G-GGRYSTPVWSPRGDLIAFTKQGGGQ  357 (435)
T ss_pred             -CCEEEEEECCCCCCeEEEEECCCCCeE-Eee-------------------c-C-CCcccCeEECCCCCEEEEEEcCCCc
Confidence             46666555 333  5778887654321 110                   0 0 1125568899999999887653   


Q ss_pred             CeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCC
Q 004685          301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (737)
Q Consensus       301 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  340 (737)
                      ..|.+||+..+.. . ....+.......|+|+++.+.+..
T Consensus       358 ~~i~~~d~~~~~~-~-~lt~~~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        358 FSIGVMKPDGSGE-R-ILTSGFLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             eEEEEEECCCCce-E-eccCCCCCCCCeECCCCCEEEEEE
Confidence            3688888765432 2 222333456778999887766544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.02  E-value=8.3e-09  Score=98.08  Aligned_cols=234  Identities=14%  Similarity=0.037  Sum_probs=150.0

Q ss_pred             CCcccccccccccccccccceeecccC------CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EEcccCccc
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQ------GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SIETGHSAN   95 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~------~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~--~~~~~h~~~   95 (737)
                      ..+.+.|++++..  --.....|++-.      ....++.|++.+..++++..+|.+.+-+........  .. +.|+.+
T Consensus        91 a~a~G~i~~~r~~--~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E  167 (339)
T KOG0280|consen   91 AHARGQIQLYRND--EDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFE  167 (339)
T ss_pred             ccccceEEEEeec--cceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-ccccee
Confidence            4556677776621  112223333321      124567899989999999999999966655443332  45 789999


Q ss_pred             eEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004685           96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (737)
Q Consensus        96 V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw  175 (737)
                      +.-.+|+... .+++.+|+.|+.+..||++.+...        .....+-|...|.+|.-+|..+.+++||++|-.|++|
T Consensus       168 ~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~~~--------i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~  238 (339)
T KOG0280|consen  168 AWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPKTF--------IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL  238 (339)
T ss_pred             eeeeecccCC-CceEEecCCCceEEEEEecCCcce--------eeecceeeecceEEEecCCCCCceEEEeccccceeee
Confidence            9999999876 789999999999999999943311        1233566899999999999888999999999999999


Q ss_pred             EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (737)
Q Consensus       176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~  255 (737)
                      |.|.-..+                        +... ...+.|+.+.++|.....++.++.-.-.+|-+.......  + 
T Consensus       239 DtRnm~kP------------------------l~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e--~-  290 (339)
T KOG0280|consen  239 DTRNMGKP------------------------LFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE--F-  290 (339)
T ss_pred             ehhcccCc------------------------cccC-ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc--h-
Confidence            99965422                        1111 123678888888865434444444455677776644321  0 


Q ss_pred             CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEE-EEEcCC
Q 004685          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVY-LMDVNH  310 (737)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~-iwd~~~  310 (737)
                                  .........|.. -+..-.|......|++++. |..++ +|-.-+
T Consensus       291 ------------~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  291 ------------QIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             ------------heeeeccccccc-eeeccccccccceeeeeeccccceeeeeeecc
Confidence                        000111122222 1333445444456777665 66644 775544

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.00  E-value=2.5e-08  Score=96.74  Aligned_cols=196  Identities=16%  Similarity=0.161  Sum_probs=115.4

Q ss_pred             ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccC------------CCceeEEEEecCC-
Q 004685           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH------------TRRVKKLAVEVGN-  159 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~~p~~-  159 (737)
                      ..-|.+|.|...  |.+|++|..+|.|.++.-......     .+.....++.|            ...|..+.|.++. 
T Consensus        25 adiis~vef~~~--Ge~LatGdkgGRVv~f~r~~~~~~-----ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n   97 (433)
T KOG1354|consen   25 ADIISAVEFDHY--GERLATGDKGGRVVLFEREKLYKG-----EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN   97 (433)
T ss_pred             hcceeeEEeecc--cceEeecCCCCeEEEeeccccccc-----ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence            456889999998  899999999999999975542210     01112222223            3567889998743 


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCCCCCC------CCCCCccceEEEeccC-----CceeeccCCCCCccceEEEEEecCCC
Q 004685          160 PHVVWSASEDGTLRQHDFRQGSSCPPA------GSSHQECRNILLDLRC-----GAKRSLADPPKQTLSLKSCDISSTRP  228 (737)
Q Consensus       160 ~~~l~s~s~Dg~I~vwdl~~~~~~~~~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~i~~sp~~~  228 (737)
                      ...++..+.|++|++|.++........      ..........+..+..     ...........|...|+++.++.+. 
T Consensus        98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-  176 (433)
T KOG1354|consen   98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-  176 (433)
T ss_pred             ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-
Confidence            346667788999999998765432100      0000000000000000     0011112235688899999999974 


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC-CCEEEEEeCCCeEEEEE
Q 004685          229 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMD  307 (737)
Q Consensus       229 ~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-g~~l~~g~~dg~v~iwd  307 (737)
                      ..++++ +|=+|.+|++.-...--.+..       ++......+..      -|++..|||. ..+++-.+..|.|++-|
T Consensus       177 Et~lSA-DdLRINLWnlei~d~sFnIVD-------IKP~nmEeLte------VITsaEFhp~~cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  177 ETFLSA-DDLRINLWNLEIIDQSFNIVD-------IKPANMEELTE------VITSAEFHPHHCNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             ceEeec-cceeeeeccccccCCceeEEE-------ccccCHHHHHH------HHhhhccCHhHccEEEEecCCCcEEEee
Confidence            555554 678999999874331111100       00000001111      3888999995 55677777899999999


Q ss_pred             cCC
Q 004685          308 VNH  310 (737)
Q Consensus       308 ~~~  310 (737)
                      ++.
T Consensus       243 mR~  245 (433)
T KOG1354|consen  243 MRQ  245 (433)
T ss_pred             chh
Confidence            986

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.97  E-value=1.5e-09  Score=73.85  Aligned_cols=39  Identities=23%  Similarity=0.570  Sum_probs=37.6

Q ss_pred             ccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEc
Q 004685          659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT  697 (737)
Q Consensus       659 ~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~  697 (737)
                      |+++.+|.+|.+.|++|+|+|++.+|+|+|.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            578999999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.97  E-value=2.7e-09  Score=122.80  Aligned_cols=193  Identities=15%  Similarity=0.206  Sum_probs=157.8

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                      -|-..|.+|.=+|...+.+||+.||.|++|....++.+..+.......|+.+.|+..  |+.+..+..||.+.+|.... 
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ--GNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc--CCceeeeccCCceeecccCC-
Confidence            345678888889988999999999999999999999888887667799999999999  79999999999999999883 


Q ss_pred             CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe---CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s---~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (737)
                                ++....+.|....+.++|-.   ..+++++   .++.+.+||.......                     
T Consensus      2283 ----------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~--------------------- 2328 (2439)
T KOG1064|consen 2283 ----------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMN--------------------- 2328 (2439)
T ss_pred             ----------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccc---------------------
Confidence                      45778889999999999965   4566654   5689999996544311                     


Q ss_pred             eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (737)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (737)
                       ..+.  ..|...++++++.|. .++|++|+.+|.|++||++..+.++.++                          .  
T Consensus      2329 -s~v~--~~H~~gaT~l~~~P~-~qllisggr~G~v~l~D~rqrql~h~~~--------------------------~-- 2376 (2439)
T KOG1064|consen 2329 -SLVH--TCHDGGATVLAYAPK-HQLLISGGRKGEVCLFDIRQRQLRHTFQ--------------------------A-- 2376 (2439)
T ss_pred             -ceee--eecCCCceEEEEcCc-ceEEEecCCcCcEEEeehHHHHHHHHhh--------------------------h--
Confidence             0111  467889999999997 5899999999999999999876554431                          1  


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          285 VTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       285 v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                        ++ ...++++|+..|.++||++...+
T Consensus      2377 --~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 --LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             --hh-hhheeeccCcccceEEEEccccc
Confidence              45 67789999999999999999864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.93  E-value=4.5e-06  Score=87.99  Aligned_cols=209  Identities=14%  Similarity=0.132  Sum_probs=119.6

Q ss_pred             EEEEeCC----CcEEEEEC--CCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC----CCcEEEEecCCCCCCCCCC
Q 004685           65 LISGSDD----THINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG----DAEVRLFNLSRFSGRGLDD  134 (737)
Q Consensus        65 lasgs~d----g~V~vwd~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~----dg~I~iwd~~~~~~~~~~~  134 (737)
                      ++.|+..    +.|.+|++  .+++....-..........++++|+  +.+|.+...    ++.|..|.+....+.    
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~--~~~LY~~~e~~~~~g~v~~~~i~~~~g~----   75 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPD--GRRLYVVNEGSGDSGGVSSYRIDPDTGT----   75 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TT--SSEEEEEETTSSTTTEEEEEEEETTTTE----
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeC--CCEEEEEEccccCCCCEEEEEECCCcce----
Confidence            4455555    68888888  4444322211123455677889998  688888776    578999998863222    


Q ss_pred             CCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCC
Q 004685          135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ  214 (737)
Q Consensus       135 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (737)
                        ...+..........+.++++|++..++++...+|.|.++++.....+.       .... ++... +.  ........
T Consensus        76 --L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~-------~~~~-~~~~~-g~--g~~~~rq~  142 (345)
T PF10282_consen   76 --LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLG-------EVVQ-TVRHE-GS--GPNPDRQE  142 (345)
T ss_dssp             --EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEE-------EEEE-EEESE-EE--ESSTTTTS
T ss_pred             --eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccc-------eeee-ecccC-CC--CCcccccc
Confidence              122333433455667899999554444444468999999998743210       0000 11000 00  00011122


Q ss_pred             ccceEEEEEecCCCcEEEE-EeCCCcEEEEECCCCCC-cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC
Q 004685          215 TLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  292 (737)
Q Consensus       215 ~~~v~~i~~sp~~~~~l~t-~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~  292 (737)
                      .....++.|+|++ +++++ .-....|++|++..... +...               ..+  .-..+..-..++|+|+++
T Consensus       143 ~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~---------------~~~--~~~~G~GPRh~~f~pdg~  204 (345)
T PF10282_consen  143 GPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPV---------------DSI--KVPPGSGPRHLAFSPDGK  204 (345)
T ss_dssp             STCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEE---------------EEE--ECSTTSSEEEEEE-TTSS
T ss_pred             cccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEe---------------ecc--ccccCCCCcEEEEcCCcC
Confidence            3456789999985 55554 44557899999976541 1110               000  001122377899999999


Q ss_pred             EEEEEeC-CCeEEEEEcCC
Q 004685          293 EVLLSYS-GEHVYLMDVNH  310 (737)
Q Consensus       293 ~l~~g~~-dg~v~iwd~~~  310 (737)
                      ++++... ++.|.+|++..
T Consensus       205 ~~Yv~~e~s~~v~v~~~~~  223 (345)
T PF10282_consen  205 YAYVVNELSNTVSVFDYDP  223 (345)
T ss_dssp             EEEEEETTTTEEEEEEEET
T ss_pred             EEEEecCCCCcEEEEeecc
Confidence            9988877 78999999884

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.92  E-value=2.4e-08  Score=95.47  Aligned_cols=242  Identities=12%  Similarity=0.182  Sum_probs=152.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-E----EEEEcccCc------------cceEEEEEeeCCCCCEEEE
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-L----LHSIETGHS------------ANVFCTKFVPETSDELVVS  112 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-~----~~~~~~~h~------------~~V~~v~~sp~~~~~~l~s  112 (737)
                      ...|+++.|...|.+|++|...|.|.+|.-+... +    ...| ++|.            ..|..+.|..++....++.
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            4679999999999999999999999999865432 1    1223 3443            5688899988765567888


Q ss_pred             EECCCcEEEEecCCCCCCCC------------------CC-----------CC---CCCceee-ccCCCceeEEEEecCC
Q 004685          113 GAGDAEVRLFNLSRFSGRGL------------------DD-----------NA---ITPSALY-QCHTRRVKKLAVEVGN  159 (737)
Q Consensus       113 gs~dg~I~iwd~~~~~~~~~------------------~~-----------~~---~~~~~~~-~~h~~~v~~l~~~p~~  159 (737)
                      .+.|.+|++|.+........                  ..           ..   ..|.+.. ..|.-.|.++.|.. +
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D  183 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-D  183 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-c
Confidence            88999999999876421110                  00           00   0111111 45677788999987 4


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc
Q 004685          160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF  239 (737)
Q Consensus       160 ~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~  239 (737)
                      ...++ ...|-.|.+|++....           ....+.+++......      -..-|++..|+|...+.+.-.+..|.
T Consensus       184 ~et~l-SaDdLrINLWnl~i~D-----------~sFnIVDiKP~nmee------LteVItSaeFhp~~cn~fmYSsSkG~  245 (460)
T COG5170         184 KETLL-SADDLRINLWNLEIID-----------GSFNIVDIKPHNMEE------LTEVITSAEFHPEMCNVFMYSSSKGE  245 (460)
T ss_pred             hheee-eccceeeeeccccccC-----------CceEEEeccCccHHH------HHHHHhhcccCHhHcceEEEecCCCc
Confidence            45554 4567899999987643           223344443322221      13457888999988788888999999


Q ss_pred             EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceee
Q 004685          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR  317 (737)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~  317 (737)
                      |++-|+|....--.-.     .....+..+........-...|..+.|+++|+++++-..- +|.|||+...+.+...
T Consensus       246 Ikl~DlRq~alcdn~~-----klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikT  317 (460)
T COG5170         246 IKLNDLRQSALCDNSK-----KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKT  317 (460)
T ss_pred             EEehhhhhhhhccCch-----hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCcee
Confidence            9999998432100000     0000000000000000111248889999999988877655 9999999997755443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.86  E-value=1.8e-06  Score=102.93  Aligned_cols=69  Identities=7%  Similarity=0.009  Sum_probs=58.6

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEe-------------ecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCC
Q 004685          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKML-------------LGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS  701 (737)
Q Consensus       635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l-------------~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~  701 (737)
                      ++++|+++++-+.++.|++||..++.+....             .++-....+|+++++|+++++-+.+++|++||+.++
T Consensus       811 vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        811 CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            7899999999999999999999988766432             122236789999999999999999999999999998


Q ss_pred             CC
Q 004685          702 VP  703 (737)
Q Consensus       702 ~~  703 (737)
                      +.
T Consensus       891 ~~  892 (1057)
T PLN02919        891 EA  892 (1057)
T ss_pred             cc
Confidence            76

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.86  E-value=1.1e-07  Score=92.54  Aligned_cols=195  Identities=14%  Similarity=0.156  Sum_probs=131.6

Q ss_pred             CCcccccccccccc--cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeEEEEEcccCccceE
Q 004685           24 PDVNHSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS----SRKLLHSIETGHSANVF   97 (737)
Q Consensus        24 ~~~~~~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~----~~~~~~~~~~~h~~~V~   97 (737)
                      .+.|.++++|-..-  +....++.  .-..+++++.++++...|+.|-..|++.-+.+.    +...++.. ..|...|.
T Consensus        42 ~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~-~~h~~~v~  118 (404)
T KOG1409|consen   42 VSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDY-LAHQARVS  118 (404)
T ss_pred             ccccceeeeEEeccccccCchhhh--hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhh-hhhhccee
Confidence            45566777766321  11122222  234689999999999999999999999988654    34444555 67889999


Q ss_pred             EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC-------------------------------CCCCCCCCceeeccC
Q 004685           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG-------------------------------LDDNAITPSALYQCH  146 (737)
Q Consensus        98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~-------------------------------~~~~~~~~~~~~~~h  146 (737)
                      .+-|+-.  ...+++.+.|..+.---.+.+.+..                               .......++..+.+|
T Consensus       119 ~~if~~~--~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h  196 (404)
T KOG1409|consen  119 AIVFSLT--HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH  196 (404)
T ss_pred             eEEecCC--ceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence            9888876  4788888877665432222111100                               011223456778899


Q ss_pred             CCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004685          147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (737)
Q Consensus       147 ~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (737)
                      .+.++++.|.+ ...+|++|..|..+.+||+...+-.                        .....+|...|..++.-+.
T Consensus       197 ~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~------------------------~~el~gh~~kV~~l~~~~~  251 (404)
T KOG1409|consen  197 TGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGT------------------------AYELQGHNDKVQALSYAQH  251 (404)
T ss_pred             ccceEEEEEcC-CCcEEEeccccCceEEEeccCCcce------------------------eeeeccchhhhhhhhhhhh
Confidence            99999999999 6688999999999999999766522                        1222234445555555443


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCC
Q 004685          227 RPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       227 ~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                       -..+.+++.||.|-+|+++...
T Consensus       252 -t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  252 -TRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             -heeeeeccCCCeEEEEecccee
Confidence             4688899999999999997543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.86  E-value=6.6e-07  Score=84.22  Aligned_cols=213  Identities=13%  Similarity=0.051  Sum_probs=139.4

Q ss_pred             EEEEcC-----CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           55 AISWNS-----KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        55 ~l~~s~-----~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      .|.|-|     ...+||.|+..|...+|...+.+....+...|...|+-+.=.-+. ...+..++.|.++++.++.-...
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEecCcc
Confidence            455655     345899999999999999987665444434444433322211111 23567778899999998874322


Q ss_pred             CCCCCCCCCCceeeccCCCc--eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          130 RGLDDNAITPSALYQCHTRR--VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                                  .+..|...  +.++++++ ++.++++.+....|..|.+.....-         ... ++         
T Consensus       151 ------------~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey---------~~~-~~---------  198 (344)
T KOG4532|consen  151 ------------KFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEY---------IEN-IY---------  198 (344)
T ss_pred             ------------cceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccce---------eee-eE---------
Confidence                        12223333  78899999 6789999999999999998765311         000 00         


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                      ++   ..+..-.+..|+.. ...+|++..||.+.|||+|............                ..++.+.+..+.|
T Consensus       199 ~a---~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst----------------rp~hnGa~R~c~F  258 (344)
T KOG4532|consen  199 EA---PTSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEISST----------------RPHHNGAFRVCRF  258 (344)
T ss_pred             ec---ccCCCceeeeeccC-cceEEEEecCCcEEEEEecccccchhhhccc----------------CCCCCCceEEEEe
Confidence            11   12233467788886 4799999999999999999765332221111                2244557999999


Q ss_pred             cCCCC--EEEEEeCCCeEEEEEcCCCCcceeeeec
Q 004685          288 SPNGE--EVLLSYSGEHVYLMDVNHAGGRAMRYTV  320 (737)
Q Consensus       288 sp~g~--~l~~g~~dg~v~iwd~~~~~~~~~~~~~  320 (737)
                      +|-|.  +|+..-.-+.+.+.|+++..........
T Consensus       259 sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~  293 (344)
T KOG4532|consen  259 SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP  293 (344)
T ss_pred             cCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence            98664  4666666789999999998765554433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.84  E-value=3.8e-07  Score=99.41  Aligned_cols=201  Identities=13%  Similarity=0.096  Sum_probs=122.0

Q ss_pred             CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---CcEEEEecCCCCCCCCCCCCCCCceeeccCCC
Q 004685           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (737)
Q Consensus        72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (737)
                      ..|.++|..... ...+ ..+...+.+.+|+|+  +++|+.+..+   ..|++||+..+.           ...+..+..
T Consensus       170 ~~l~~~d~~g~~-~~~l-~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~-----------~~~~~~~~~  234 (417)
T TIGR02800       170 YELQVADYDGAN-PQTI-TRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQ-----------REKVASFPG  234 (417)
T ss_pred             ceEEEEcCCCCC-CEEe-ecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence            358888876444 3444 356667899999999  7888877654   479999987532           222333455


Q ss_pred             ceeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004685          149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (737)
Q Consensus       149 ~v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (737)
                      .+.+++|+|++..++++.+.++  .|.+||+.++...                       .+..   +........|+|+
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----------------------~l~~---~~~~~~~~~~s~d  288 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----------------------RLTN---GPGIDTEPSWSPD  288 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-----------------------ECCC---CCCCCCCEEECCC
Confidence            5677899996555555666554  4888888765411                       1111   1112335678997


Q ss_pred             CCcEEEEEeC-CC--cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC--
Q 004685          227 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--  301 (737)
Q Consensus       227 ~~~~l~t~s~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg--  301 (737)
                      + +.|+..+. ++  .|+++|+.+++.. .+.                  ..   ...+..+.|+|+|++|+.++.++  
T Consensus       289 g-~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~------------------~~---~~~~~~~~~spdg~~i~~~~~~~~~  345 (417)
T TIGR02800       289 G-KSIAFTSDRGGSPQIYMMDADGGEVR-RLT------------------FR---GGYNASPSWSPDGDLIAFVHREGGG  345 (417)
T ss_pred             C-CEEEEEECCCCCceEEEEECCCCCEE-Eee------------------cC---CCCccCeEECCCCCEEEEEEccCCc
Confidence            4 56655443 33  5777777654321 110                  00   11356789999999999988876  


Q ss_pred             -eEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004685          302 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (737)
Q Consensus       302 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  338 (737)
                       .|.+||+.++... ... ........+|+|+.+.+.+
T Consensus       346 ~~i~~~d~~~~~~~-~l~-~~~~~~~p~~spdg~~l~~  381 (417)
T TIGR02800       346 FNIAVMDLDGGGER-VLT-DTGLDESPSFAPNGRMILY  381 (417)
T ss_pred             eEEEEEeCCCCCeE-Ecc-CCCCCCCceECCCCCEEEE
Confidence             8899998874422 221 1222334577777665544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.84  E-value=1.1e-06  Score=95.12  Aligned_cols=230  Identities=12%  Similarity=0.073  Sum_probs=127.8

Q ss_pred             ecccCCceEEEEEcCCCCEE---EEEeCC--CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-CC--
Q 004685           46 LEGHQGCVNAISWNSKGSLL---ISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA--  117 (737)
Q Consensus        46 l~~H~~~V~~l~~s~~g~~l---asgs~d--g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg--  117 (737)
                      |......+.+=+|+|||+.+   ++...+  ..|.+.++.+++.....  .........+|+|+  |+.|+..+. +|  
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPD--G~~Laf~s~~~g~~  255 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPR--KKLLAFISDRYGNP  255 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCC--CCEEEEEECCCCCc
Confidence            44445566677999999742   244433  35777888877643322  23444556899999  677765542 23  


Q ss_pred             --cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       118 --~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                        .+.+|++......       .+..............+|+|++..++++...+|...+|.+......            
T Consensus       256 di~~~~~~~~~g~~g-------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g------------  316 (428)
T PRK01029        256 DLFIQSFSLETGAIG-------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG------------  316 (428)
T ss_pred             ceeEEEeecccCCCC-------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc------------
Confidence              3444666532111       1122222223344678999955445555556676666654321000            


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---CcEEEEECCCCCCcccccCCCCCCCCccccccccc
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (737)
                             +....+..   ....+....|+|++ +.|+..+.+   ..|.+||+.+++.....                  
T Consensus       317 -------~~~~~lt~---~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt------------------  367 (428)
T PRK01029        317 -------QSPRLLTK---KYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDYQLT------------------  367 (428)
T ss_pred             -------cceEEecc---CCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEcc------------------
Confidence                   00011111   12345677899984 666655433   46899999876532110                  


Q ss_pred             cCCCCcccceeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685          273 SEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       273 ~~~~~~~~~i~~v~~sp~g~~l~~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (737)
                        .+.  ..+....|+|||++|+....   ...|++||+..++..... .........+|+|.
T Consensus       368 --~~~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~  425 (428)
T PRK01029        368 --TSP--ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAF  425 (428)
T ss_pred             --CCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence              000  12566899999998876544   357899999876543333 23334556777774

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=1e-06  Score=94.30  Aligned_cols=235  Identities=13%  Similarity=0.093  Sum_probs=150.7

Q ss_pred             ccccccceeecccCCceEEEEEcCCC------------CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeC
Q 004685           37 VRRLSQERELEGHQGCVNAISWNSKG------------SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (737)
Q Consensus        37 ~~~~~~~~~l~~H~~~V~~l~~s~~g------------~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~  104 (737)
                      ..+.+.+..+.-|+..|+.+.|.|..            -+||++.-.|.|.+||...+..+..+ ..|..++..++|-|.
T Consensus        42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~  120 (1062)
T KOG1912|consen   42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPA  120 (1062)
T ss_pred             hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeec
Confidence            45667788888899999999999731            26788889999999999999888888 788999999999985


Q ss_pred             CC--CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          105 TS--DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       105 ~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                      .+  .++|+.-..-.+|.+|+..+++.          +.....-.....|+.+.|-+...+..-+..|.+.+.+.-....
T Consensus       121 rd~Srd~LlaIh~ss~lvLwntdtG~k----------~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se  190 (1062)
T KOG1912|consen  121 RDDSRDVLLAIHGSSTLVLWNTDTGEK----------FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE  190 (1062)
T ss_pred             cCcchheeEEecCCcEEEEEEccCCce----------eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence            42  24677777788999999887542          3333434456778999997777666666778888877655443


Q ss_pred             CCCCCCCCCccceEEEeccCCce----------eeccCCC-CCc--cceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          183 CPPAGSSHQECRNILLDLRCGAK----------RSLADPP-KQT--LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~--~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      +..      .+....+.......          ......+ .-.  .....++|+|.-.+.+ -......+.++|++-..
T Consensus       191 p~~------pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~~prellv~dle~~~  263 (1062)
T KOG1912|consen  191 PDV------PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FITFPRELLVFDLEYEC  263 (1062)
T ss_pred             CCC------CceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEEeccceEEEcchhhc
Confidence            210      01111111000000          0000000 000  1122356788643333 34456779999998665


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC--CEEEEEeCCCeEEEEEcCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g--~~l~~g~~dg~v~iwd~~~  310 (737)
                      .+.....+                   ..  .+.-+.|-|++  ..|+....||.+.+|--+.
T Consensus       264 ~l~vvpie-------------------r~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  264 CLAVVPIE-------------------RG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             eeEEEEec-------------------cC--CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            44433211                   11  13446666654  5699999999999997665

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.79  E-value=2.7e-07  Score=96.26  Aligned_cols=66  Identities=12%  Similarity=0.284  Sum_probs=57.7

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCC-----CC-eEEEEecCCcEEEEcCCCCC
Q 004685          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPF-----DC-VVATSGIDNTIKIWTPSASV  702 (737)
Q Consensus       635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~-----~~-~l~S~~~Dg~i~lW~~~~~~  702 (737)
                      ++|||..+++||  +.|++||+.+++.+..|.||.++|.+++|--+     |. +|.++..+.-|.+|-+....
T Consensus       152 is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~  223 (541)
T KOG4547|consen  152 ISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED  223 (541)
T ss_pred             EcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence            799999999987  68999999999999999999999999999887     54 66666778889999877743

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.74  E-value=4e-07  Score=95.00  Aligned_cols=193  Identities=16%  Similarity=0.139  Sum_probs=140.3

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEccc--CccceEEEEEeeCC------------------CCCEEEEEECCCcE
Q 004685           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPET------------------SDELVVSGAGDAEV  119 (737)
Q Consensus        60 ~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~--h~~~V~~v~~sp~~------------------~~~~l~sgs~dg~I  119 (737)
                      |-..++|....||.+++||..+++....|.+.  -.+..++..|.-..                  +...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            45678999999999999999998877766321  13445555554110                  12467888889999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      .+|++..+.-        .....-..|.+.|.++.++. +-..|.+++.|+.+..|+......+                
T Consensus        83 ~~ys~~~g~i--------t~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~----------------  137 (541)
T KOG4547|consen   83 LLYSVAGGEI--------TAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVII----------------  137 (541)
T ss_pred             EEEEecCCeE--------EEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceee----------------
Confidence            9999986432        11223357999999999987 5678999999999999999877532                


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                               .........+.+++.+|+ +..+++++  +.|++||+++.+.+..|.                    ||.+
T Consensus       138 ---------~~~~~~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~ft--------------------gh~s  185 (541)
T KOG4547|consen  138 ---------RIWKEQKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVITFT--------------------GHGS  185 (541)
T ss_pred             ---------eeeccCCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEEec--------------------CCCc
Confidence                     112233456788999998 67888886  689999999988776653                    3443


Q ss_pred             cceeEEEEcCC-----CCEEEEEeC-CCeEEEEEcCC
Q 004685          280 LHLTHVTFSPN-----GEEVLLSYS-GEHVYLMDVNH  310 (737)
Q Consensus       280 ~~i~~v~~sp~-----g~~l~~g~~-dg~v~iwd~~~  310 (737)
                       +|+++.|--+     |.+++++.. +..+.+|-+..
T Consensus       186 -~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  186 -PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             -ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence             6999998876     777777655 66778887766

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=4.2e-08  Score=100.45  Aligned_cols=212  Identities=15%  Similarity=0.196  Sum_probs=141.0

Q ss_pred             eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC
Q 004685           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~-------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d  116 (737)
                      ..|.||+..|..++--.+.+-+++++.|++|++|.+..       ..+..++ +.|+.+|.++-|..+  -..++++  |
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~--lr~i~Sc--D  803 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLAD--LRSIASC--D  803 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeec--cceeeec--c
Confidence            45789999999988777788899999999999999863       2255566 789999999999988  4566655  8


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC-CCcEEE-EEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVW-SASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~-s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                      |-|.+||.-.+....        ........+.+..+..-+. +..++. -|+...+|+++|.+..+-.         |.
T Consensus       804 ~giHlWDPFigr~La--------q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~---------~E  866 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLA--------QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT---------CE  866 (1034)
T ss_pred             CcceeecccccchhH--------hhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce---------ee
Confidence            999999976432210        0001111222333333332 334444 4478899999999987632         11


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (737)
                                 ..+...++...-+.+++..+. +++++++-.+|+|.+.|.|+++.+..+....    |           
T Consensus       867 -----------~kVcna~~Pna~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vINswrpme----c-----------  919 (1034)
T KOG4190|consen  867 -----------LKVCNAPGPNALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVINSWRPME----C-----------  919 (1034)
T ss_pred             -----------EEeccCCCCchheeEEEeccC-cchhhHHhcCCcEEEEecCCCceeccCCccc----c-----------
Confidence                       112223334456788888886 6899999999999999999988665442110    0           


Q ss_pred             CCCcccceeEEEEcCCCCEEEEEeCCCeEEE-EEcCCC
Q 004685          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL-MDVNHA  311 (737)
Q Consensus       275 ~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~i-wd~~~~  311 (737)
                            ....++ .|..+.|+....|..+-+ |....+
T Consensus       920 ------dllqla-apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  920 ------DLLQLA-APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             ------hhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence                  122222 355666777777778877 776654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.72  E-value=3e-06  Score=90.87  Aligned_cols=248  Identities=17%  Similarity=0.162  Sum_probs=159.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCC----------CCEEEEEECCCcEE
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS----------DELVVSGAGDAEVR  120 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~----------~~~l~sgs~dg~I~  120 (737)
                      ..-.++.|+|.| +||-|+. ..|.|-|..+-+.++.+ ..|...|+.+.|.|...          .-+|+++...|.|.
T Consensus        16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            346788999876 5666654 47899999999999999 78999999999998531          12567777889999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC---CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      +||......          +..+..|.+++..+.|-+.   ...+|++-....++.+|+..+|+.              +
T Consensus        93 l~d~~~~s~----------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k--------------~  148 (1062)
T KOG1912|consen   93 LVDFVLASV----------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK--------------F  148 (1062)
T ss_pred             EEEehhhhh----------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce--------------e
Confidence            999986432          4456678888999998762   235676767778999999998873              2


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC----CcccccCCCC---CCCCccccccc
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP----PLTSCQKRMS---PPPCVNYFCPM  270 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~----~~~~~~~~~~---~~~~~~~~~~~  270 (737)
                      |....           ....+.|+.+.|.+.+.+..-+..|.+.+-+.-..+    +.+.++...+   +....+.....
T Consensus       149 Wk~~y-----------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~  217 (1062)
T KOG1912|consen  149 WKYDY-----------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATG  217 (1062)
T ss_pred             ecccc-----------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcc
Confidence            33222           224566788888888888888888888777653222    1111111100   00000000000


Q ss_pred             cc-cCCCCcc---cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCc
Q 004685          271 HL-SEHGRSS---LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL  336 (737)
Q Consensus       271 ~~-~~~~~~~---~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  336 (737)
                      .. .......   .....++|+|.-+.++-...-..+.++|++-........-.......+.+-|+.+..
T Consensus       218 ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd  287 (1062)
T KOG1912|consen  218 NSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRD  287 (1062)
T ss_pred             ccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcc
Confidence            00 0000000   013346789987777777777899999998866655555555666677777775543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=4.6e-06  Score=86.25  Aligned_cols=219  Identities=11%  Similarity=0.133  Sum_probs=131.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-----------CCcEEE
Q 004685           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-----------DAEVRL  121 (737)
Q Consensus        53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-----------dg~I~i  121 (737)
                      =+-+.|||-|.+|+|-..- -|.+|--..-..++.|  .| ..|.-+.|||.  ..+|++=+.           ...++|
T Consensus       213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF--~H-p~Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRF--YH-PGVQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeeEEecCCceEEEEEecc-ceeeecCccHHHHHhc--cC-CCceeeecCCc--cceEEEecCCccccCcccCCCceEEE
Confidence            3568999999999999876 4789987666666666  35 45889999999  699998653           257999


Q ss_pred             EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004685          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~  201 (737)
                      ||++++.....       ...++.....-.-+.|+. +.+++|.-.. .+|.+|+.....+.               +.+
T Consensus       287 WDI~tG~lkrs-------F~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~ll---------------d~K  342 (698)
T KOG2314|consen  287 WDIATGLLKRS-------FPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLL---------------DKK  342 (698)
T ss_pred             EEccccchhcc-------eeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeee---------------ccc
Confidence            99998643211       111111111123468888 5588876665 57999986654321               111


Q ss_pred             CCceeeccCCCCCccceEEEEEecCCCcEEEEEe-----CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004685          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (737)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (737)
                                ......|....|+|. +++||-=.     .-..+.+..+.+++.+.+.          +      +    
T Consensus       343 ----------slki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt~----------n------l----  391 (698)
T KOG2314|consen  343 ----------SLKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRTK----------N------L----  391 (698)
T ss_pred             ----------ccCCccccCcccCCC-cceEEEEcccccCCcceEEEEecCccceeeec----------c------c----
Confidence                      112346777889996 35554221     1123334444333322111          0      0    


Q ss_pred             CcccceeE--EEEcCCCCEEEEEeC----------CCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCC
Q 004685          277 RSSLHLTH--VTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG  335 (737)
Q Consensus       277 ~~~~~i~~--v~~sp~g~~l~~g~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~  335 (737)
                      +   .|..  +-|-.+|.+|..-..          -..+.||.++....+.......+.+-..+|.|.++.
T Consensus       392 f---nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdk  459 (698)
T KOG2314|consen  392 F---NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDK  459 (698)
T ss_pred             e---eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCe
Confidence            0   1222  456678888766433          124678888776666666666677777777776543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.69  E-value=2e-07  Score=87.35  Aligned_cols=170  Identities=15%  Similarity=0.137  Sum_probs=107.7

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEEcccCccceEEEEEeeCCCCCEEEEEE-----
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGA-----  114 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs-----  114 (737)
                      .+.+.+..|+++=.+=+.+--++.++++..||.+.+.+.+.-. ....+...|.+ -.+.+....  ++.+.++.     
T Consensus        80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~--~~~i~s~~~g~~n  156 (319)
T KOG4714|consen   80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRH--GNSILSGGCGNWN  156 (319)
T ss_pred             CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeec--ccEEecCCcceEe
Confidence            3344444455443333333346779999999999999987521 11111111111 112222222  34444432     


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                      .-+..++|+++.....         ....+ -...|++++-+|...+++++|+.||.+.+||.+....+           
T Consensus       157 ~~d~~~a~~~~p~~t~---------~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p-----------  215 (319)
T KOG4714|consen  157 AQDNFYANTLDPIKTL---------IPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP-----------  215 (319)
T ss_pred             eccceeeecccccccc---------ccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccch-----------
Confidence            1234566666542211         11111 22348999999977788999999999999999987533           


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~  247 (737)
                                   ......|+.+++.+-|+|.++..|++++.||.+..||..+
T Consensus       216 -------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  216 -------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             -------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence                         4445567889999999999999999999999999999874

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=2.5e-06  Score=93.25  Aligned_cols=203  Identities=10%  Similarity=0.071  Sum_probs=119.8

Q ss_pred             cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---CcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004685           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (737)
Q Consensus        73 ~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (737)
                      .|.++|.+.+.. ..+ ..+...+...+|+|+  |+.|+..+.+   ..|.+|++..+..           ..+......
T Consensus       180 ~l~~~d~~g~~~-~~l-~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~-----------~~l~~~~g~  244 (430)
T PRK00178        180 TLQRSDYDGARA-VTL-LQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR-----------EQITNFEGL  244 (430)
T ss_pred             EEEEECCCCCCc-eEE-ecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE-----------EEccCCCCC
Confidence            477888876543 344 356778999999999  6887766543   3588889875432           122222334


Q ss_pred             eeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC
Q 004685          150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (737)
Q Consensus       150 v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  227 (737)
                      +....|+|++..++++...++  .|.+||+.++...                       .+..   +........|+|++
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~lt~---~~~~~~~~~~spDg  298 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-----------------------RVTN---HPAIDTEPFWGKDG  298 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-----------------------Eccc---CCCCcCCeEECCCC
Confidence            556899996545555666665  5777788765421                       1111   11233456899985


Q ss_pred             CcEEEEEeCCC--cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC-C--e
Q 004685          228 PHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-E--H  302 (737)
Q Consensus       228 ~~~l~t~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d-g--~  302 (737)
                      ..++++...++  .|+++|+.+++.. .+.           +       .+.   ......|+|+|++|+....+ +  .
T Consensus       299 ~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt-----------~-------~~~---~~~~~~~Spdg~~i~~~~~~~~~~~  356 (430)
T PRK00178        299 RTLYFTSDRGGKPQIYKVNVNGGRAE-RVT-----------F-------VGN---YNARPRLSADGKTLVMVHRQDGNFH  356 (430)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCEE-Eee-----------c-------CCC---CccceEECCCCCEEEEEEccCCceE
Confidence            33444443444  5667777655421 110           0       000   13346899999999887753 3  5


Q ss_pred             EEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCC
Q 004685          303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (737)
Q Consensus       303 v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  340 (737)
                      |.+||+.+++.....  .........|+|+++.+.+..
T Consensus       357 l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~  392 (430)
T PRK00178        357 VAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYAT  392 (430)
T ss_pred             EEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEE
Confidence            889999886533222  222233457888776665543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.68  E-value=2.9e-05  Score=77.05  Aligned_cols=275  Identities=13%  Similarity=0.117  Sum_probs=170.5

Q ss_pred             ccccccccccccccccc-eeecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCC--CeEE--EEEcccCccceEE
Q 004685           27 NHSLQMHSSLVRRLSQE-RELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSS--RKLL--HSIETGHSANVFC   98 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~-~~l~~H~~~V~~l~~s~~g~~lasgs~---dg~V~vwd~~~--~~~~--~~~~~~h~~~V~~   98 (737)
                      .+.|..|+...++.+.. ..+-.+.+.++-|+|+|+++.|.++-.   +|.|.-|.++.  |+..  ... .....+-+.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~y   93 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCY   93 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeE
Confidence            45566666443333222 223346778899999999998888754   57788887764  4432  222 223344589


Q ss_pred             EEEeeCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc----------eeEEEEecCCCcEEEEEe
Q 004685           99 TKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR----------VKKLAVEVGNPHVVWSAS  167 (737)
Q Consensus        99 v~~sp~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~p~~~~~l~s~s  167 (737)
                      ++++++  +++|+++.. -|.|.++-++.. +..      .....+..|.+.          +....+.| ++++++++.
T Consensus        94 vsvd~~--g~~vf~AnY~~g~v~v~p~~~d-G~l------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~D  163 (346)
T COG2706          94 VSVDED--GRFVFVANYHSGSVSVYPLQAD-GSL------QPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPD  163 (346)
T ss_pred             EEECCC--CCEEEEEEccCceEEEEEcccC-Ccc------ccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEee
Confidence            999999  788888876 589999998763 221      112222235444          88899999 456666654


Q ss_pred             C-CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004685          168 E-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (737)
Q Consensus       168 ~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~  246 (737)
                      . --.|.+|++..+......                     .... ........|.|+|+..-..+++--+++|-+|...
T Consensus       164 LG~Dri~~y~~~dg~L~~~~---------------------~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~  221 (346)
T COG2706         164 LGTDRIFLYDLDDGKLTPAD---------------------PAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN  221 (346)
T ss_pred             cCCceEEEEEcccCcccccc---------------------cccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence            3 246999999976533110                     0000 1223457899999854344556678999999988


Q ss_pred             CC-CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCcceeee----ec
Q 004685          247 ML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRY----TV  320 (737)
Q Consensus       247 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~~~----~~  320 (737)
                      .. ..+..++.....+   ..|         ....+...+.++|||++|+++.. ...|-+|.+........+.    ..
T Consensus       222 ~~~g~~~~lQ~i~tlP---~dF---------~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te  289 (346)
T COG2706         222 PAVGKFEELQTIDTLP---EDF---------TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE  289 (346)
T ss_pred             CCCceEEEeeeeccCc---ccc---------CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC
Confidence            64 2222222111000   001         12225778999999999999977 5589999887754333322    23


Q ss_pred             CCCCeeeeeccCCCCccCCCCCCCcc
Q 004685          321 GDASKIMSFTPTLNGLELQPPIHDFL  346 (737)
Q Consensus       321 ~~~~~~~~~~p~~~~~~~~~~~~~~~  346 (737)
                      +..++.+.|+|..+-+....+.+..+
T Consensus       290 g~~PR~F~i~~~g~~Liaa~q~sd~i  315 (346)
T COG2706         290 GQFPRDFNINPSGRFLIAANQKSDNI  315 (346)
T ss_pred             CcCCccceeCCCCCEEEEEccCCCcE
Confidence            56688889999887776665554443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.67  E-value=1.2e-05  Score=96.15  Aligned_cols=243  Identities=13%  Similarity=0.096  Sum_probs=131.9

Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcc-cC------------ccceEEEEEeeCCCCCEE-EEEECCCc
Q 004685           54 NAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIET-GH------------SANVFCTKFVPETSDELV-VSGAGDAE  118 (737)
Q Consensus        54 ~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~-~h------------~~~V~~v~~sp~~~~~~l-~sgs~dg~  118 (737)
                      ..+++++ ++.++++-+.++.|++||... ..+..+-. +.            -.....+++.++  ++.| ++-..++.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCce
Confidence            3678887 466777778889999999864 44433311 11            123578999988  4654 44455688


Q ss_pred             EEEEecCCCCCCCCCCCCCCCceeecc-------CCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCC
Q 004685          119 VRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  191 (737)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~  191 (737)
                      |+.+|+............ .......+       .-.....++++|.++.++++.+.++.|.+||...+........+..
T Consensus       648 Ir~id~~~~~V~tlag~G-~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~  726 (1057)
T PLN02919        648 LREIDFVNETVRTLAGNG-TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE  726 (1057)
T ss_pred             EEEEecCCCEEEEEeccC-cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence            999987642211000000 00000000       0123467999997777888888889999999876542100000000


Q ss_pred             ccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccc
Q 004685          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (737)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (737)
                      .       ...+..    ...........++|+|++..++++-+.++.|++||+.++............+.....+....
T Consensus       727 ~-------~~~g~~----~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        727 R-------NLNGSS----GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             c-------cCCCCc----cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            0       000000    00011234678999998544677777789999999986542110000000000000000000


Q ss_pred             ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .............++++++|..+++-..++.|++||..++
T Consensus       796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg  835 (1057)
T PLN02919        796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK  835 (1057)
T ss_pred             CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence            0000000012457999999998888888999999998874

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=3.7e-07  Score=91.83  Aligned_cols=283  Identities=13%  Similarity=0.092  Sum_probs=182.9

Q ss_pred             CCCCCcccccccccccc-cccccceeecccCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCccceEE
Q 004685           21 DTRPDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFC   98 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~h~~~V~~   98 (737)
                      -++.+.++.+++|...- ...+.++.++.|.+.|.+++.+-++-+++|.+. |..++++|+++-..+.-+...  .....
T Consensus        23 iiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~--~lPg~  100 (558)
T KOG0882|consen   23 IIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV--DLPGF  100 (558)
T ss_pred             EEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc--cCCCc
Confidence            34577888999998544 667888899999999999999999999999777 999999999875544222111  11112


Q ss_pred             EEEeeCCCC---CEEE-EEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004685           99 TKFVPETSD---ELVV-SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ  174 (737)
Q Consensus        99 v~~sp~~~~---~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~v  174 (737)
                      +.|.... |   ..++ +.-.++.+.++|-.....        +.....+-|..+|.++.+.+ .+..+++....|.|..
T Consensus       101 a~wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~--------q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEy  170 (558)
T KOG0882|consen  101 AEWVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFC--------QDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEY  170 (558)
T ss_pred             eEEecCC-CCeeeeEEeecccCCCcEEECCcCCcC--------ccceecccccCceEEEEeec-cccceeeccccceeEe
Confidence            2233221 2   2333 334579999999875332        22445567999999999999 5577878888899999


Q ss_pred             EEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004685          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (737)
Q Consensus       175 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~  254 (737)
                      |.....-..+        .....|.++..  ..+...+.......++.|+|+ +..+.+-+.|..|++++.++++.++.+
T Consensus       171 Ws~e~~~qfP--------r~~l~~~~K~e--TdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  171 WSAEGPFQFP--------RTNLNFELKHE--TDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ecCCCcccCc--------ccccccccccc--chhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccchhhhhh
Confidence            9987421110        00111111111  112333445567789999998 588999999999999999999977766


Q ss_pred             cCCCCCCCCcc--cccccccc----------CCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCC
Q 004685          255 QKRMSPPPCVN--YFCPMHLS----------EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD  322 (737)
Q Consensus       255 ~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~  322 (737)
                      .....-..+..  .+...+..          ...+....-+.++|...|++|+-|+.= .|++.++.++. ....++..+
T Consensus       240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~-v~ri~gk~e  317 (558)
T KOG0882|consen  240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNT-VVRILGKDE  317 (558)
T ss_pred             hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCe-EEEEeccch
Confidence            43221111000  00000100          011223345678899999999999876 58899999854 555566555


Q ss_pred             CCeeee
Q 004685          323 ASKIMS  328 (737)
Q Consensus       323 ~~~~~~  328 (737)
                      .++...
T Consensus       318 ~ir~~~  323 (558)
T KOG0882|consen  318 AIRFTR  323 (558)
T ss_pred             hhhhhh
Confidence            544443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.65  E-value=9e-06  Score=85.72  Aligned_cols=251  Identities=12%  Similarity=0.091  Sum_probs=148.7

Q ss_pred             CceEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--e--EEEEEcccCccceEEEEEeeCCCCCEEEEEEC-CCcEEE
Q 004685           51 GCVNAISWNSKGSLLISGSD----DTHINVWSYSSR--K--LLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRL  121 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~----dg~V~vwd~~~~--~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg~I~i  121 (737)
                      .....|+++|++++|.+...    ++.|..|++...  +  .+... .........++++|+  +.+|+++.. +|.|.+
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~--g~~l~vany~~g~v~v  113 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPD--GRFLYVANYGGGSVSV  113 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTT--SSEEEEEETTTTEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecC--CCEEEEEEccCCeEEE
Confidence            45567999999999988876    578999988764  3  33333 224455678999999  688777764 899999


Q ss_pred             EecCCCCCCCCCCCCCCCceee----------ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCC
Q 004685          122 FNLSRFSGRGLDDNAITPSALY----------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  191 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~----------~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~  191 (737)
                      +++... +...     .....+          ..-.....++.|+|++..++++.-....|.+|++......        
T Consensus       114 ~~l~~~-g~l~-----~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~--------  179 (345)
T PF10282_consen  114 FPLDDD-GSLG-----EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK--------  179 (345)
T ss_dssp             EEECTT-SEEE-----EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T--------
T ss_pred             EEccCC-cccc-----eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce--------
Confidence            999863 1110     001111          1123457899999955444444444468999999776411        


Q ss_pred             ccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccc
Q 004685          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPM  270 (737)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~  270 (737)
                        ....        ..+. . ........+.|+|++...+++.-.++.|.+|++.... .+....          .....
T Consensus       180 --l~~~--------~~~~-~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~----------~~~~~  237 (345)
T PF10282_consen  180 --LTPV--------DSIK-V-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ----------TISTL  237 (345)
T ss_dssp             --EEEE--------EEEE-C-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE----------EEESC
T ss_pred             --EEEe--------eccc-c-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE----------Eeeec
Confidence              0000        0011 1 1234568899999865566667778999999988221 111110          00000


Q ss_pred             cccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCC--CCcce--eeeecCCCCeeeeeccCCCCccCCCCC
Q 004685          271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH--AGGRA--MRYTVGDASKIMSFTPTLNGLELQPPI  342 (737)
Q Consensus       271 ~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~--~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~  342 (737)
                      .....+.  .....++++|||++|+++.. .+.|.+|++..  +....  .....+..++.++++|+.+.+....+.
T Consensus       238 ~~~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  238 PEGFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             ETTSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             ccccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence            0000111  14778999999999999876 67999999943  22211  222236678999999988776655443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.65  E-value=3e-06  Score=92.43  Aligned_cols=200  Identities=8%  Similarity=0.058  Sum_probs=114.0

Q ss_pred             cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-CC--cEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004685           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (737)
Q Consensus        73 ~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (737)
                      .|.++|.+.... ..+ ..+...+.+..|+|+  |+.|+..+. ++  .|.+||+..+...        .+..+   ...
T Consensus       199 ~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~~--------~lt~~---~g~  263 (448)
T PRK04792        199 QLMIADYDGYNE-QML-LRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVRE--------KVTSF---PGI  263 (448)
T ss_pred             EEEEEeCCCCCc-eEe-ecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCeE--------EecCC---CCC
Confidence            577778766543 334 356778999999999  677776543 33  5888888753321        12222   223


Q ss_pred             eeEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC
Q 004685          150 VKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (737)
Q Consensus       150 v~~l~~~p~~~~~l~s~s~Dg~--I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  227 (737)
                      .....|+|++..++++.+.++.  |.++|+.+++..                       .+..   +.......+|+|++
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-----------------------~lt~---~~~~~~~p~wSpDG  317 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-----------------------RITR---HRAIDTEPSWHPDG  317 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-----------------------ECcc---CCCCccceEECCCC
Confidence            3468999966556666677775  666777665411                       1111   12234567899985


Q ss_pred             CcEEEE-EeCCC--cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CC--
Q 004685          228 PHLLLV-GGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE--  301 (737)
Q Consensus       228 ~~~l~t-~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg--  301 (737)
                       +.|+. +..++  .|.++|+.+++... +.           +       .+.   .....+|+|||++|+..+. ++  
T Consensus       318 -~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt-----------~-------~g~---~~~~~~~SpDG~~l~~~~~~~g~~  374 (448)
T PRK04792        318 -KSLIFTSERGGKPQIYRVNLASGKVSR-LT-----------F-------EGE---QNLGGSITPDGRSMIMVNRTNGKF  374 (448)
T ss_pred             -CEEEEEECCCCCceEEEEECCCCCEEE-Ee-----------c-------CCC---CCcCeeECCCCCEEEEEEecCCce
Confidence             55544 43344  46666776544211 10           0       011   1334689999999888766 34  


Q ss_pred             eEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004685          302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (737)
Q Consensus       302 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  338 (737)
                      .|.++|+.++......  .........|+|+.+.+.+
T Consensus       375 ~I~~~dl~~g~~~~lt--~~~~d~~ps~spdG~~I~~  409 (448)
T PRK04792        375 NIARQDLETGAMQVLT--STRLDESPSVAPNGTMVIY  409 (448)
T ss_pred             EEEEEECCCCCeEEcc--CCCCCCCceECCCCCEEEE
Confidence            4666787775432221  1222233468887766554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.64  E-value=1.1e-07  Score=110.12  Aligned_cols=180  Identities=17%  Similarity=0.211  Sum_probs=134.4

Q ss_pred             CCcccccccccccccccccceeec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s  102 (737)
                      ++.++.+++|.  -....++..++ +-...|+.+.|+.+|+.+..+..||.+.+|.... +..... +.|.....+..|-
T Consensus      2226 gs~dgsv~~~~--w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s~-qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2226 GSQDGSVRMFE--WGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-KPYTSW-QCHNKALSDFRFI 2301 (2439)
T ss_pred             cCCCceEEEEe--ccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-cceecc-ccCCccccceeee
Confidence            45567777777  33344455554 2237899999999999999999999999999873 344444 6788888888887


Q ss_pred             eCCCCCEEEEEE---CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685          103 PETSDELVVSGA---GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (737)
Q Consensus       103 p~~~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~  179 (737)
                      .    ..+++++   .++.+.+||........       .+.  ..|.+.++++++-| ..++|++|+.+|.|++||++.
T Consensus      2302 ~----s~~~tag~s~d~~n~~lwDtl~~~~~s-------~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rq 2367 (2439)
T KOG1064|consen 2302 G----SLLATAGRSSDNRNVCLWDTLLPPMNS-------LVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQ 2367 (2439)
T ss_pred             e----hhhhccccCCCCCcccchhcccCcccc-------eee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHH
Confidence            5    4666664   47889999987543321       133  78999999999999 668999999999999999998


Q ss_pred             CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC
Q 004685          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (737)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~  257 (737)
                      .+..                              |..+.    +. . ..+|++|+..|.|+||++.....+..++..
T Consensus      2368 rql~------------------------------h~~~~----~~-~-~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2368 RQLR------------------------------HTFQA----LD-T-REYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred             HHHH------------------------------HHhhh----hh-h-hheeeccCcccceEEEEccccchhhcCchh
Confidence            7643                              11111    33 2 469999999999999999988777666543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.63  E-value=6.6e-07  Score=89.23  Aligned_cols=165  Identities=16%  Similarity=0.193  Sum_probs=110.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE----EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKL----LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~----~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                      .+..+..++.+++||.+..+....++++.....    +...  .-...-+.+.|..+  ......+..-|.++-+|+-..
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~--~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIRE--DTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeec--cceEEEEeecCCceeeeeecc
Confidence            344456778899999998888877777754432    2222  12223344455544  244444444444444444331


Q ss_pred             CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                      ..        .+...+.+|-+.++.++|+| ++++++++..|..|++-.......+                        
T Consensus       140 ~~--------~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~I------------------------  186 (390)
T KOG3914|consen  140 DS--------GRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVI------------------------  186 (390)
T ss_pred             cc--------cCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccch------------------------
Confidence            11        11345678999999999999 5588889999999999776554321                        


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~  255 (737)
                      -....+|+..|..++.-++  +.|++++.|++|++||+++++.+.++.
T Consensus       187 esfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  187 ESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             hhhccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence            1223468889999999884  679999999999999999999776653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.62  E-value=0.00011  Score=73.03  Aligned_cols=201  Identities=15%  Similarity=0.171  Sum_probs=122.1

Q ss_pred             CCcEEEEECCCC--eEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---CCcEEEEecCCCCCCCCCCCCCCCceeecc
Q 004685           71 DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQC  145 (737)
Q Consensus        71 dg~V~vwd~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  145 (737)
                      +.-|.+|++.+.  +........+...++-++|+|+  .+.|.++-.   +|.|..|.+...++..      ..+.....
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~--~~~LY~v~~~~~~ggvaay~iD~~~G~L------t~ln~~~~   86 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD--QRHLYVVNEPGEEGGVAAYRIDPDDGRL------TFLNRQTL   86 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCC--CCEEEEEEecCCcCcEEEEEEcCCCCeE------EEeecccc
Confidence            577999998842  2211111356788899999999  678877755   4778888887543332      11111111


Q ss_pred             CCCceeEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEe
Q 004685          146 HTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  224 (737)
Q Consensus       146 h~~~v~~l~~~p~~~~~l~s~s~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  224 (737)
                      -..+.+.+++++ ++++++++.. -|.|.++-++..-.+..       ....+.....+...     ......+....|.
T Consensus        87 ~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~-------~v~~~~h~g~~p~~-----rQ~~~h~H~a~~t  153 (346)
T COG2706          87 PGSPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQP-------VVQVVKHTGSGPHE-----RQESPHVHSANFT  153 (346)
T ss_pred             CCCCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCcccc-------ceeeeecCCCCCCc-----cccCCccceeeeC
Confidence            223348899999 5566666655 58899999876432210       00111111100000     0111236778899


Q ss_pred             cCCCcEEEEEe-CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCe
Q 004685          225 STRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEH  302 (737)
Q Consensus       225 p~~~~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~  302 (737)
                      |+ +++|++.. .-.+|.+|++..++....-.              ..+    ..+..-+.|+|+|++++.++.++ +++
T Consensus       154 P~-~~~l~v~DLG~Dri~~y~~~dg~L~~~~~--------------~~v----~~G~GPRHi~FHpn~k~aY~v~EL~st  214 (346)
T COG2706         154 PD-GRYLVVPDLGTDRIFLYDLDDGKLTPADP--------------AEV----KPGAGPRHIVFHPNGKYAYLVNELNST  214 (346)
T ss_pred             CC-CCEEEEeecCCceEEEEEcccCccccccc--------------ccc----CCCCCcceEEEcCCCcEEEEEeccCCE
Confidence            98 46766665 34579999998665332211              111    11223667999999999999998 999


Q ss_pred             EEEEEcCCC
Q 004685          303 VYLMDVNHA  311 (737)
Q Consensus       303 v~iwd~~~~  311 (737)
                      |.+|.....
T Consensus       215 V~v~~y~~~  223 (346)
T COG2706         215 VDVLEYNPA  223 (346)
T ss_pred             EEEEEEcCC
Confidence            999999884

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.62  E-value=2.9e-05  Score=74.72  Aligned_cols=233  Identities=15%  Similarity=0.139  Sum_probs=137.2

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCC--eEEE--EEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC
Q 004685           56 ISWNSKGSLLISGSDDTHINVWSYSSR--KLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (737)
Q Consensus        56 l~~s~~g~~lasgs~dg~V~vwd~~~~--~~~~--~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~  131 (737)
                      ++.+.+|++||.- .|..|.|-.....  ..+.  .+.+.....-.-++|+|+  +.+||.+...|+|++||+.....-.
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELFV   79 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeEE
Confidence            5677899988876 4557777654432  1222  222333345678999999  7999999999999999997422111


Q ss_pred             CCCCCCCCceeec-cCCCceeEEEEecCC-----CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          132 LDDNAITPSALYQ-CHTRRVKKLAVEVGN-----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       132 ~~~~~~~~~~~~~-~h~~~v~~l~~~p~~-----~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                           +.+..... .-...|..+.|.+..     ...|++-..+|.++-|-+..+....     .            ...
T Consensus        80 -----I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-----y------------~e~  137 (282)
T PF15492_consen   80 -----IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-----Y------------QEN  137 (282)
T ss_pred             -----cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-----c------------eee
Confidence                 11111111 123556677675422     2245566777888877764332110     0            001


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCC-----------CcEEEEECCCCCCcccccCCCCCCC-------Ccccc
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----------AFARLYDRRMLPPLTSCQKRMSPPP-------CVNYF  267 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-----------g~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~  267 (737)
                      ..+.........|.++.++|.. ++|++|+..           .-+..|.+-+..+........+...       +...+
T Consensus       138 hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~  216 (282)
T PF15492_consen  138 HSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI  216 (282)
T ss_pred             EEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence            1222333456789999999975 677666532           1367787776665544322221111       11111


Q ss_pred             ccccc-cCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 004685          268 CPMHL-SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (737)
Q Consensus       268 ~~~~~-~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~  314 (737)
                      ....+ ...+.....|..|..||||..|++...+|.|.+|++.+....
T Consensus       217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence            11111 112333446999999999999999999999999999986543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.60  E-value=1e-07  Score=64.65  Aligned_cols=38  Identities=39%  Similarity=0.834  Sum_probs=36.3

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS   78 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd   78 (737)
                      +++.+|++|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56789999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.59  E-value=4.8e-08  Score=105.41  Aligned_cols=230  Identities=16%  Similarity=0.194  Sum_probs=152.5

Q ss_pred             hhhhhccccCCCCC-cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc
Q 004685           12 YDMLDTRHTDTRPD-VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET   90 (737)
Q Consensus        12 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~   90 (737)
                      ...|..+++.+..+ ..+...=......+++..++|+.|+..-+|++|+-+.++|+.|+..|.|+++++.+|...... .
T Consensus      1062 t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-n 1140 (1516)
T KOG1832|consen 1062 TGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-N 1140 (1516)
T ss_pred             hhcccchhhcCcccccccCcccchhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-c
Confidence            33444555544422 333333334567789999999999999999999999999999999999999999999988888 8


Q ss_pred             cCccceEEEEEeeCCCCCEEEEEECC-C-cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC
Q 004685           91 GHSANVFCTKFVPETSDELVVSGAGD-A-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE  168 (737)
Q Consensus        91 ~h~~~V~~v~~sp~~~~~~l~sgs~d-g-~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  168 (737)
                      .|.++|+.+.-+-+  |..+++.+.- . -..+|++...-         .+.+++.    .-.++.|+.. ...-+.|..
T Consensus      1141 cH~SavT~vePs~d--gs~~Ltsss~S~PlsaLW~~~s~~---------~~~Hsf~----ed~~vkFsn~-~q~r~~gt~ 1204 (1516)
T KOG1832|consen 1141 CHQSAVTLVEPSVD--GSTQLTSSSSSSPLSALWDASSTG---------GPRHSFD----EDKAVKFSNS-LQFRALGTE 1204 (1516)
T ss_pred             ccccccccccccCC--cceeeeeccccCchHHHhcccccc---------Ccccccc----ccceeehhhh-HHHHHhccc
Confidence            99999999998888  5665555433 2 47789987521         1233333    3467888763 333334555


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004685          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (737)
Q Consensus       169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~  248 (737)
                      -....+||+.++.+.......                     .......-++..|+|++ .+++   .||  .+||.|..
T Consensus      1205 ~d~a~~YDvqT~~~l~tylt~---------------------~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1205 ADDALLYDVQTCSPLQTYLTD---------------------TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred             ccceEEEecccCcHHHHhcCc---------------------chhhhhhccccccCCCc-ceEe---eCc--eeeeeccH
Confidence            567899999998644111100                     00111222677899975 4443   244  37999977


Q ss_pred             CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      +.++.+..             ..  .       -..=.|+|.|..+++.+     .|||+++.+
T Consensus      1258 ~aIh~FD~-------------ft--~-------~~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1258 EAIHRFDQ-------------FT--D-------YGGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             HHHhhhhh-------------he--e-------cccccccCCCceEEeec-----hhhhhHHHH
Confidence            65544421             00  0       11125999999998876     589999865

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.57  E-value=2.5e-07  Score=98.26  Aligned_cols=162  Identities=16%  Similarity=0.286  Sum_probs=122.8

Q ss_pred             eEEEEEcCCC--CEEEEEeCCCcEEEEECCCC--eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           53 VNAISWNSKG--SLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        53 V~~l~~s~~g--~~lasgs~dg~V~vwd~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      |-...|+|..  .+-+.......-.+|++...  ..+.-++.+|...|+.+-|+|.. ...+++++.|..+..||++...
T Consensus        70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~  148 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPH  148 (1081)
T ss_pred             hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCC
Confidence            5667788753  33333334456678998643  33444447999999999999987 8899999999999999999754


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                               .++..+.........++|+..+++.+++ +..+.|.+||++.+..+                        +
T Consensus       149 ---------~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~p------------------------l  194 (1081)
T KOG0309|consen  149 ---------RPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTP------------------------L  194 (1081)
T ss_pred             ---------cceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcc------------------------e
Confidence                     3456666666677889999988888854 55678999999988643                        3


Q ss_pred             cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      ...++|...++.++|+......+.+++.|++|+.||.....
T Consensus       195 ~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  195 CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             EEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            33445777889999988767789999999999999987543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.55  E-value=3.8e-07  Score=85.52  Aligned_cols=113  Identities=21%  Similarity=0.291  Sum_probs=83.1

Q ss_pred             EEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           56 ISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        56 l~~s~~g~~lasgs~-----dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      .++...+++|.++..     -+..+.|+++..+....- ..-...|.+++-+|.. ..++++|+.||.+.+||.+...  
T Consensus       138 ~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-~~~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~--  213 (319)
T KOG4714|consen  138 RKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS-KKALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVA--  213 (319)
T ss_pred             cceeecccEEecCCcceEeeccceeeeccccccccccc-ccccccchhhhCCccc-ccEEEEecCCCeEEEEEccccc--
Confidence            334445666665532     234556666544332221 1122449999999985 6778889999999999999753  


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~  179 (737)
                             .|...++.|..++..+.|+|.++..|++++.||.+..||..+
T Consensus       214 -------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  214 -------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             -------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence                   346778899999999999999999999999999999999875

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=8.4e-06  Score=84.76  Aligned_cols=217  Identities=11%  Similarity=0.117  Sum_probs=136.6

Q ss_pred             cCCceEEEEEcCCC--CEEEE-----EeCCCcEEEEECCCCeE-----EEEEcccCccceEEEEEeeCCCCCEEEEEE--
Q 004685           49 HQGCVNAISWNSKG--SLLIS-----GSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVVSGA--  114 (737)
Q Consensus        49 H~~~V~~l~~s~~g--~~las-----gs~dg~V~vwd~~~~~~-----~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs--  114 (737)
                      |...|+.+.+||.+  ..+|+     ++.-..|+||.+.....     .++|   ....=..+.|++.+ ..+|+..+  
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF---Fkadkvqm~WN~~g-t~LLvLastd  239 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF---FKADKVQMKWNKLG-TALLVLASTD  239 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc---cccceeEEEeccCC-ceEEEEEEEe
Confidence            57789999999864  35553     45667899998863221     1222   12223457788874 23333332  


Q ss_pred             CCC---------cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE-EeCCCcEEEEEcCCCCCCC
Q 004685          115 GDA---------EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCP  184 (737)
Q Consensus       115 ~dg---------~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s-~s~Dg~I~vwdl~~~~~~~  184 (737)
                      -|.         ++++.++....          ....+ .-.++|+++.|+|.+..+.++ |..--.+.+||++..-   
T Consensus       240 VDktn~SYYGEq~Lyll~t~g~s----------~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~---  305 (566)
T KOG2315|consen  240 VDKTNASYYGEQTLYLLATQGES----------VSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP---  305 (566)
T ss_pred             ecCCCccccccceEEEEEecCce----------EEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE---
Confidence            233         47777776211          12222 347899999999955444333 4456789999988642   


Q ss_pred             CCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---CcEEEEECCCCCCcccccCCCCCC
Q 004685          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPP  261 (737)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~  261 (737)
                                  +.++             .+++-+++-|+|. +++++.++.+   |.|-|||+.+.+.+..+...    
T Consensus       306 ------------v~df-------------~egpRN~~~fnp~-g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~----  355 (566)
T KOG2315|consen  306 ------------VFDF-------------PEGPRNTAFFNPH-GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA----  355 (566)
T ss_pred             ------------eEeC-------------CCCCccceEECCC-CCEEEEeecCCCCCceEEEeccchhhccccccC----
Confidence                        1221             1345578889997 5787777765   88999999987766554211    


Q ss_pred             CCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC------CCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCC
Q 004685          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (737)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~  334 (737)
                                         .-+-+.|+|||+++++++.      |+.++||++.-...-...+..  ....++|-|-..
T Consensus       356 -------------------~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~s--EL~qv~W~P~~~  413 (566)
T KOG2315|consen  356 -------------------NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKS--ELLQVEWRPFND  413 (566)
T ss_pred             -------------------CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhH--hHhheeeeecCC
Confidence                               2566899999999999976      789999998763322222221  345566666544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.51  E-value=1.2e-05  Score=75.89  Aligned_cols=244  Identities=11%  Similarity=0.001  Sum_probs=152.3

Q ss_pred             cccCCCCCcccccccccccccccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEcccCc--c
Q 004685           18 RHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHS--A   94 (737)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~--~   94 (737)
                      .-+..-++..+.+.+|....+. ...+....|...|+-+.=..+ .-.+..++.|.++++.+++.+......   |.  -
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~---h~~~~  159 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV---HNQNL  159 (344)
T ss_pred             ccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee---ecccc
Confidence            3334445555666666633222 112222233333322211112 234677888999999988765433322   32  3


Q ss_pred             ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCce-eeccCCCceeEEEEecCCCcEEEEEeCCCcEE
Q 004685           95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (737)
Q Consensus        95 ~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~  173 (737)
                      .+.+++++++  +.++++.+....|..|.+.......        +. .....++.-.+..|+. ....+|+++.||++.
T Consensus       160 ~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~--------~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~  228 (344)
T KOG4532|consen  160 TQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYI--------ENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCA  228 (344)
T ss_pred             ceeeeEEcCC--CceEEEecCCCcceEEEeCCcccee--------eeeEecccCCCceeeeecc-CcceEEEEecCCcEE
Confidence            3889999999  7999999999999999998643221        22 2333455567888988 557899999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCC-cEEEEEeCCCcEEEEECCCCCCcc
Q 004685          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP-HLLLVGGSDAFARLYDRRMLPPLT  252 (737)
Q Consensus       174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~~l~t~s~Dg~i~iwd~~~~~~~~  252 (737)
                      +||++....+..                    ..-...+.|.+.+..+.|++.+. .+|+..-.-+.+.+.|+|++....
T Consensus       229 I~DVR~~~tpm~--------------------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  229 IYDVRNMATPMA--------------------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             EEEecccccchh--------------------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence            999998764310                    11223345889999999997542 255555556899999999987554


Q ss_pred             cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .+.....           .  ...|....|..-.|+.++.-+.+.+++ .+.=|++.+
T Consensus       289 ~I~i~~d-----------~--~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  289 VIVIPDD-----------V--ERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             EEecCcc-----------c--cccccccccccccccCCCcccccccch-hhheeeccc
Confidence            4321110           0  112223347778888888878777776 555666665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.51  E-value=5.9e-05  Score=77.82  Aligned_cols=251  Identities=10%  Similarity=0.112  Sum_probs=140.7

Q ss_pred             CCCCcccccccccccccccccceeeccc-------CCceEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCeEEEEEcccC
Q 004685           22 TRPDVNHSLQMHSSLVRRLSQERELEGH-------QGCVNAISWNSKGSLLISGS-D-DTHINVWSYSSRKLLHSIETGH   92 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H-------~~~V~~l~~s~~g~~lasgs-~-dg~V~vwd~~~~~~~~~~~~~h   92 (737)
                      .++.-+..|.++|  ..+++.+.++.--       ......++++|||++|+... . +..|.|.|+.+++.+..+..  
T Consensus        71 ~~G~~~d~V~v~D--~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--  146 (352)
T TIGR02658        71 ARGKRTDYVEVID--PQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--  146 (352)
T ss_pred             ccCCCCCEEEEEE--CccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--
Confidence            3344667899999  6666677666521       12234789999999988775 3 78999999999999988832  


Q ss_pred             ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeE-EEEecCCCcEEEEEeCCCc
Q 004685           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK-LAVEVGNPHVVWSASEDGT  171 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~p~~~~~l~s~s~Dg~  171 (737)
                      .....-...++.   ..+ .-+.||......+........     .....+.....++.. -.|.+.++.+++.... |+
T Consensus       147 p~~~~vy~t~e~---~~~-~~~~Dg~~~~v~~d~~g~~~~-----~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~  216 (352)
T TIGR02658       147 PDCYHIFPTAND---TFF-MHCRDGSLAKVGYGTKGNPKI-----KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK  216 (352)
T ss_pred             CCCcEEEEecCC---ccE-EEeecCceEEEEecCCCceEE-----eeeeeecCCccccccCCceEcCCCcEEEEecC-Ce
Confidence            111111222222   222 333455555544432111000     001111110011100 0345535566666555 99


Q ss_pred             EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe---------CCCcEEE
Q 004685          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---------SDAFARL  242 (737)
Q Consensus       172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s---------~Dg~i~i  242 (737)
                      |.+.|+.......          ...+.......   ....-......-++++|++..+++...         ..+.|.+
T Consensus       217 V~~id~~~~~~~~----------~~~~~~~~~~~---~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V  283 (352)
T TIGR02658       217 IFQIDLSSGDAKF----------LPAIEAFTEAE---KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV  283 (352)
T ss_pred             EEEEecCCCccee----------cceeeeccccc---cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence            9999976654220          00011000000   000012233445999998544444232         2257999


Q ss_pred             EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeC-CCeEEEEEcCCCCcceeeeec
Q 004685          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYS-GEHVYLMDVNHAGGRAMRYTV  320 (737)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~-dg~v~iwd~~~~~~~~~~~~~  320 (737)
                      +|..+++.+..+...                      ..+..++++||++ +|++... ++.|.++|..+++........
T Consensus       284 iD~~t~kvi~~i~vG----------------------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~v  341 (352)
T TIGR02658       284 VDAKTGKRLRKIELG----------------------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQL  341 (352)
T ss_pred             EECCCCeEEEEEeCC----------------------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccC
Confidence            999998876655321                      1488899999999 8887774 788999999997765555343


Q ss_pred             C
Q 004685          321 G  321 (737)
Q Consensus       321 ~  321 (737)
                      +
T Consensus       342 g  342 (352)
T TIGR02658       342 G  342 (352)
T ss_pred             C
Confidence            3

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=3.6e-07  Score=93.76  Aligned_cols=183  Identities=14%  Similarity=0.156  Sum_probs=122.5

Q ss_pred             EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEE
Q 004685           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (737)
Q Consensus        85 ~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~  164 (737)
                      ++.+ .+|+..|..++--.+  .+-+++++.|.+|++|.++....   +.....+..++..|+.+|.++.|-. +-++++
T Consensus       728 L~nf-~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~EgD---~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~  800 (1034)
T KOG4190|consen  728 LCNF-TGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPEGD---EIGTSACQFTYQAHKKPIHDIGFLA-DLRSIA  800 (1034)
T ss_pred             eecc-cCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccccC---ccccceeeeEhhhccCcccceeeee-ccceee
Confidence            4455 689999988876666  58899999999999999985211   1122235678889999999999987 435664


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (737)
Q Consensus       165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd  244 (737)
                        +.||.|++||.--+++.....          +..+.          +..+.|.++.- -+..-+++.++...+|+++|
T Consensus       801 --ScD~giHlWDPFigr~Laq~~----------dapk~----------~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~D  857 (1034)
T KOG4190|consen  801 --SCDGGIHLWDPFIGRLLAQME----------DAPKE----------GAGGNIKCLEN-VDRHILIAGCSAESTVKLFD  857 (1034)
T ss_pred             --eccCcceeecccccchhHhhh----------cCccc----------CCCceeEeccc-Ccchheeeeccchhhheeee
Confidence              558999999976665431111          11110          01112222211 12233455558899999999


Q ss_pred             CCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 004685          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (737)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~  313 (737)
                      .|...-..++..-.                .......+.+++..|.|++++++-..|+|.+.|.++++.
T Consensus       858 aRsce~~~E~kVcn----------------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v  910 (1034)
T KOG4190|consen  858 ARSCEWTCELKVCN----------------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV  910 (1034)
T ss_pred             cccccceeeEEecc----------------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence            99876443332110                011122488999999999999999999999999999864

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.48  E-value=2.1e-07  Score=92.70  Aligned_cols=86  Identities=13%  Similarity=0.223  Sum_probs=78.1

Q ss_pred             EEeeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEee-cCCCceEEEEecCCCCeEEEEecCCcEEEE
Q 004685          618 RYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSGIDNTIKIW  696 (737)
Q Consensus       618 ~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~-gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW  696 (737)
                      ...||..-++++.    +|||+++|.|+..|..|+|=.+..--.+..|- ||+..|..++.-++.. |+|||.|++||+|
T Consensus       146 ~~lGhvSml~dVa----vS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  146 PILGHVSMLLDVA----VSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLW  220 (390)
T ss_pred             hhhhhhhhhheee----ecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEE
Confidence            5779999999988    99999999999999999999999888887775 8999999999998865 8899999999999


Q ss_pred             cCCCCCCccccC
Q 004685          697 TPSASVPSIVSG  708 (737)
Q Consensus       697 ~~~~~~~~~~~~  708 (737)
                      |+.+++.+++..
T Consensus       221 d~~sgk~L~t~d  232 (390)
T KOG3914|consen  221 DITSGKLLDTCD  232 (390)
T ss_pred             ecccCCcccccc
Confidence            999999997654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.47  E-value=0.00016  Score=77.59  Aligned_cols=196  Identities=17%  Similarity=0.083  Sum_probs=108.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (737)
Q Consensus        61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (737)
                      .+..++.++.++.|.-+|..+|+.+..+ ............  +  +..++.++.++.+..+|..+++.          +
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~p~v--~--~~~v~v~~~~g~l~ald~~tG~~----------~  128 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRV-DLDERLSGGVGA--D--GGLVFVGTEKGEVIALDAEDGKE----------L  128 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeee-cCCCCcccceEE--c--CCEEEEEcCCCEEEEEECCCCcE----------e
Confidence            4668888889999999999999988776 222221112222  2  46788888999999999876432          1


Q ss_pred             eeeccCCCceeE-EEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceE
Q 004685          141 ALYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  219 (737)
Q Consensus       141 ~~~~~h~~~v~~-l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (737)
                      .... ....+.+ ....  + ..++.++.++.+..||.++++.+              |........ . ....    ..
T Consensus       129 W~~~-~~~~~~~~p~v~--~-~~v~v~~~~g~l~a~d~~tG~~~--------------W~~~~~~~~-~-~~~~----~~  184 (377)
T TIGR03300       129 WRAK-LSSEVLSPPLVA--N-GLVVVRTNDGRLTALDAATGERL--------------WTYSRVTPA-L-TLRG----SA  184 (377)
T ss_pred             eeec-cCceeecCCEEE--C-CEEEEECCCCeEEEEEcCCCcee--------------eEEccCCCc-e-eecC----CC
Confidence            1111 1111211 1121  3 35666778999999999988632              222111100 0 0000    00


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC--CCCEEEEE
Q 004685          220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLS  297 (737)
Q Consensus       220 ~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp--~g~~l~~g  297 (737)
                      +....  + ..++.+..++.+..+|+++++.+...........              ........+.-+|  .+..++++
T Consensus       185 sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~--------------~~~~~~~~~~~~p~~~~~~vy~~  247 (377)
T TIGR03300       185 SPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR--------------TELERLVDVDGDPVVDGGQVYAV  247 (377)
T ss_pred             CCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCC--------------CchhhhhccCCccEEECCEEEEE
Confidence            11111  1 3677888889999999988875433211000000              0000000010111  35678888


Q ss_pred             eCCCeEEEEEcCCCC
Q 004685          298 YSGEHVYLMDVNHAG  312 (737)
Q Consensus       298 ~~dg~v~iwd~~~~~  312 (737)
                      +.+|.++.||..+++
T Consensus       248 ~~~g~l~a~d~~tG~  262 (377)
T TIGR03300       248 SYQGRVAALDLRSGR  262 (377)
T ss_pred             EcCCEEEEEECCCCc
Confidence            889999999988753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.45  E-value=4e-05  Score=73.83  Aligned_cols=198  Identities=12%  Similarity=0.105  Sum_probs=118.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc------CccceEEEEEeeCCC----CCEEEEEECCCcEEEE
Q 004685           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG------HSANVFCTKFVPETS----DELVVSGAGDAEVRLF  122 (737)
Q Consensus        53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~------h~~~V~~v~~sp~~~----~~~l~sgs~dg~I~iw  122 (737)
                      =.-++||||+.+||.+...|+|+++|+.... +..+...      -...|..+.|.+...    ...|+.-..+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            4568999999999999999999999997643 3344222      235677777776420    1246666788888888


Q ss_pred             ecCCCCCCCCCCCCCCCcee--ecc-CCCceeEEEEecCCCcEEEEEeC-CC----------cEEEEEcCCCCCCCCCCC
Q 004685          123 NLSRFSGRGLDDNAITPSAL--YQC-HTRRVKKLAVEVGNPHVVWSASE-DG----------TLRQHDFRQGSSCPPAGS  188 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~--~~~-h~~~v~~l~~~p~~~~~l~s~s~-Dg----------~I~vwdl~~~~~~~~~~~  188 (737)
                      -+..++.+.     +.....  +.. +...|.++.++|.. ++|+.|+. ..          .+..|.+-.+.+--....
T Consensus       125 ~vs~gt~q~-----y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~  198 (282)
T PF15492_consen  125 LVSVGTNQG-----YQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT  198 (282)
T ss_pred             EEEcccCCc-----ceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence            764322111     122222  222 46789999999955 55555542 22          356676655543211000


Q ss_pred             CCCccc------eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004685          189 SHQECR------NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (737)
Q Consensus       189 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (737)
                      ...+..      ..++.+.  ..............|..|..+|+ +.+||+...+|.|.+|++.+.+....+.....|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~--~~~~fs~~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP  273 (282)
T PF15492_consen  199 SSEDDITASSKRRGLLRIP--SFKFFSRQGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP  273 (282)
T ss_pred             ccCccccccccccceeecc--ceeeeeccccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence            000000      0111111  00011111234568999999997 689999999999999999998877776544433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.41  E-value=0.00014  Score=78.10  Aligned_cols=191  Identities=14%  Similarity=0.132  Sum_probs=107.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (737)
Q Consensus        61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (737)
                      ++..++.++.++.|..+|..+|+.+.... . ...+.+.-...   +..++.++.++.|..||..+++.          +
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~-~-~~~~~~~p~v~---~~~v~v~~~~g~l~a~d~~tG~~----------~  168 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAK-L-SSEVLSPPLVA---NGLVVVRTNDGRLTALDAATGER----------L  168 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeec-c-CceeecCCEEE---CCEEEEECCCCeEEEEEcCCCce----------e
Confidence            45678888899999999999999887762 2 22232211111   35677778899999999986432          1


Q ss_pred             eeeccCCCce-----eEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCc
Q 004685          141 ALYQCHTRRV-----KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT  215 (737)
Q Consensus       141 ~~~~~h~~~v-----~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (737)
                      ..+......+     .+....  + ..++.+..++.+..+|+++++..              |............. ...
T Consensus       169 W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~--------------W~~~~~~~~g~~~~-~~~  230 (377)
T TIGR03300       169 WTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPL--------------WEQRVALPKGRTEL-ERL  230 (377)
T ss_pred             eEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEe--------------eeeccccCCCCCch-hhh
Confidence            1111111100     111121  2 35667888899999999887632              21110000000000 000


Q ss_pred             cceE-EEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEE
Q 004685          216 LSLK-SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV  294 (737)
Q Consensus       216 ~~v~-~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l  294 (737)
                      ..+. ...+.   +..+++++.+|.++.||..+++.+.....                     .  ......  ..+..+
T Consensus       231 ~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG~~~W~~~~---------------------~--~~~~p~--~~~~~v  282 (377)
T TIGR03300       231 VDVDGDPVVD---GGQVYAVSYQGRVAALDLRSGRVLWKRDA---------------------S--SYQGPA--VDDNRL  282 (377)
T ss_pred             hccCCccEEE---CCEEEEEEcCCEEEEEECCCCcEEEeecc---------------------C--CccCce--EeCCEE
Confidence            0000 01111   24777888899999999988764432210                     0  011112  256778


Q ss_pred             EEEeCCCeEEEEEcCCCC
Q 004685          295 LLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       295 ~~g~~dg~v~iwd~~~~~  312 (737)
                      ++++.+|.|+.+|..+++
T Consensus       283 yv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       283 YVTDADGVVVALDRRSGS  300 (377)
T ss_pred             EEECCCCeEEEEECCCCc
Confidence            888899999999988753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.37  E-value=1.4e-06  Score=84.97  Aligned_cols=166  Identities=14%  Similarity=0.177  Sum_probs=115.7

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCC
Q 004685           57 SWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (737)
Q Consensus        57 ~~s~~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~  134 (737)
                      +|+-+  |.. ++.+.+-.|-+-|+++|.. +.|  ...+.|.++.|.-.  ++++..|+.+|.|...|++......   
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf--~sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnqG~---  288 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF--QSKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQGN---  288 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeecccc-ccc--ccchhHHHHHhccc--CCeeEecccCCcEEEEEeeecccCC---
Confidence            66643  334 5566677899999988743 344  26778999999987  6999999999999999999752211   


Q ss_pred             CCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCC
Q 004685          135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ  214 (737)
Q Consensus       135 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (737)
                        ..+...+ -|.+.|+++..-.....+|++.+.+|+|++||++..+...                      .+....+|
T Consensus       289 --~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~----------------------~V~qYeGH  343 (425)
T KOG2695|consen  289 --GWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK----------------------SVMQYEGH  343 (425)
T ss_pred             --CcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc----------------------ceeeeecc
Confidence              1334444 4899999998776566788899999999999999776421                      01111122


Q ss_pred             ccce--EEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC
Q 004685          215 TLSL--KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (737)
Q Consensus       215 ~~~v--~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~  257 (737)
                      ...-  .-+...+. +..++++++|...|||.++.++.+.+++.+
T Consensus       344 vN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  344 VNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             cccccccccccccc-cceEEEccCeeEEEEEecccCceeeccCCC
Confidence            1111  11223444 357888999999999999999988777544

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.33  E-value=1.2e-05  Score=88.01  Aligned_cols=185  Identities=15%  Similarity=0.174  Sum_probs=132.4

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (737)
Q Consensus        61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (737)
                      ++..++-|+.-..+..+|+.+.+..+.. .-....|.-++.+    +..+.+|...|+|.+-|.++          .+.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s----------~~~i  210 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNS----------FETI  210 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeee-eccCCceEEEEec----CcEEEeecccceEEeecCCc----------Ccee
Confidence            3456777777778889999988777665 3333446666554    46899999999999999986          3558


Q ss_pred             eeeccCCCceeEEEEecCCCcEEEEEeC---------CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004685          141 ALYQCHTRRVKKLAVEVGNPHVVWSASE---------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (737)
Q Consensus       141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~---------Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (737)
                      +++.+|++.|..+..   .+++|++|+.         |..|++||+|..+.+..+...                      
T Consensus       211 ht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~----------------------  265 (1118)
T KOG1275|consen  211 HTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP----------------------  265 (1118)
T ss_pred             eeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc----------------------
Confidence            999999999998877   4578888875         557899999987755322111                      


Q ss_pred             CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004685          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (737)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~  290 (737)
                          ....-+.|.|.-...+++++..|...+-|..+.. +..          ....+       + ..+..+..++++++
T Consensus       266 ----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~----------~~~~v-------~-p~~s~i~~fDiSsn  323 (1118)
T KOG1275|consen  266 ----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA----------GVKMV-------N-PNGSGISAFDISSN  323 (1118)
T ss_pred             ----cCchhhhhcccccceEEEEecccceeeccccccCCCcc----------ceeEE-------c-cCCCcceeEEecCC
Confidence                1113456777767789999999999998854322 100          00000       0 11113999999999


Q ss_pred             CCEEEEEeCCCeEEEEE
Q 004685          291 GEEVLLSYSGEHVYLMD  307 (737)
Q Consensus       291 g~~l~~g~~dg~v~iwd  307 (737)
                      |..++.|..+|.|.+|.
T Consensus       324 ~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  324 GDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CceEEEecccCcEeeec
Confidence            99999999999999998

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.31  E-value=8.3e-05  Score=75.78  Aligned_cols=120  Identities=14%  Similarity=0.189  Sum_probs=95.8

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDT-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg-~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~  126 (737)
                      +|.+.|.-..+..+++-++.|..|| .|-|+|.++++... + ...-+.|.++..+|+  |.+++.+.....|.+.|+.+
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~d--GK~~vvaNdr~el~vididn  432 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDN  432 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCC--CcEEEEEcCceEEEEEEecC
Confidence            6788899999998888999999999 89999999887544 4 356688999999999  79999998888999999987


Q ss_pred             CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC----CcEEEEEcCCCCC
Q 004685          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSS  182 (737)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D----g~I~vwdl~~~~~  182 (737)
                      ++.+          ..-+...+-|+.+.|+| ++.++|-+--+    ..|+++|+..++.
T Consensus       433 gnv~----------~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         433 GNVR----------LIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             CCee----------EecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence            5432          22233456799999999 67888876554    4799999988654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.29  E-value=8.8e-06  Score=86.45  Aligned_cols=246  Identities=12%  Similarity=0.142  Sum_probs=164.0

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------EEEEEcccCccceEEEEEeeCCCCCEEEEEE
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---------------LLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs  114 (737)
                      .....|++|+.+..++|+|+.||.++|-.+.+..               ..+++ .+|...|.-+.|+..  .+.|-++.
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~--~QKLTtSD   90 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNEN--NQKLTTSD   90 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEeccc--cccccccC
Confidence            3568899999999999999999999999876521               12334 689999999999998  58899999


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                      .+|.|.+|-+-.+.-        -....-....+.|.+++|.. ++..+.....||.|.+=.+...+.            
T Consensus        91 t~GlIiVWmlykgsW--------~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRI------------  149 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSW--------CEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRI------------  149 (1189)
T ss_pred             CCceEEEEeeecccH--------HHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeecccee------------
Confidence            999999998875321        00112223466789999998 557777889999998887766541            


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (737)
                         |           ...........+.|+++. ..++.+-.+|.+.+||....- ...+..     .|.-.. ......
T Consensus       150 ---w-----------gKeLkg~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF-~~Kl~~-----~c~Vn~-tg~~s~  207 (1189)
T KOG2041|consen  150 ---W-----------GKELKGQLLAHVLWSEDL-EQALFKKANGETHLYDNQGNF-ERKLEK-----DCEVNG-TGIFSN  207 (1189)
T ss_pred             ---c-----------chhcchheccceeecccH-HHHHhhhcCCcEEEecccccH-HHhhhh-----ceEEee-eeeecC
Confidence               1           111112345578899974 677777788999999975321 111100     000000 000000


Q ss_pred             CCCcccceeEEEEc--------CCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCCCc
Q 004685          275 HGRSSLHLTHVTFS--------PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDF  345 (737)
Q Consensus       275 ~~~~~~~i~~v~~s--------p~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  345 (737)
                      .++   .|..+.|.        |+...|+++...|.+.|-.-.+. ..+..+..+..+....|+|.+.-++....+...
T Consensus       208 ~~~---kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND-~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da  282 (1189)
T KOG2041|consen  208 FPT---KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND-PEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDA  282 (1189)
T ss_pred             CCc---cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC-CCCeEEecccEeecceecCCCcEEEEccCcccc
Confidence            111   14444443        58889999999999998766653 345556666777778899988777766554433

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.29  E-value=3.9e-06  Score=80.61  Aligned_cols=256  Identities=16%  Similarity=0.261  Sum_probs=151.6

Q ss_pred             ccccccccccccc---cccceeecccC------------CceEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeE-----
Q 004685           27 NHSLQMHSSLVRR---LSQERELEGHQ------------GCVNAISWNSKGS--LLISGSDDTHINVWSYSSRKL-----   84 (737)
Q Consensus        27 ~~~~~~~~~~~~~---~~~~~~l~~H~------------~~V~~l~~s~~g~--~lasgs~dg~V~vwd~~~~~~-----   84 (737)
                      -+++.++.-.-..   .+....|++|.            ..|+.|.|..++.  .++..+.|.+|++|.+.....     
T Consensus        47 gGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~  126 (460)
T COG5170          47 GGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAE  126 (460)
T ss_pred             CceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhc
Confidence            3555555422222   34555677775            4588999987543  455566789999998754200     


Q ss_pred             --------------------------------EE-----EEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685           85 --------------------------------LH-----SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        85 --------------------------------~~-----~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                                                      +.     .....|..-|.++.|+.+  ...++++ .|-.|.+|++...
T Consensus       127 nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD--~et~lSa-DdLrINLWnl~i~  203 (460)
T COG5170         127 NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD--KETLLSA-DDLRINLWNLEII  203 (460)
T ss_pred             cccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc--hheeeec-cceeeeecccccc
Confidence                                            00     001357778899999998  4566654 5788999999865


Q ss_pred             CCCCCCCCCCCCceeeccC-----CCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          128 SGRGLDDNAITPSALYQCH-----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                      ++...       +..+++|     ..-|++..|+|..-..+.-.+..|.|++-|++.....-...        .+.....
T Consensus       204 D~sFn-------IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~--------klfe~~~  268 (460)
T COG5170         204 DGSFN-------IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK--------KLFELTI  268 (460)
T ss_pred             CCceE-------EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch--------hhhhhcc
Confidence            54321       2223333     45688999999877777777888999999999765331000        0000000


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccccccC--CCCcc
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSE--HGRSS  279 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  279 (737)
                      .. .....+..-...|..+.|++. ++++++-. --+++|||.+..+ ++.+++..     |.   ....+..  ....-
T Consensus       269 D~-v~~~ff~eivsSISD~kFs~n-gryIlsRd-yltvkiwDvnm~k~pikTi~~h-----~~---l~~~l~d~YEnDai  337 (460)
T COG5170         269 DG-VDVDFFEEIVSSISDFKFSDN-GRYILSRD-YLTVKIWDVNMAKNPIKTIPMH-----CD---LMDELNDVYENDAI  337 (460)
T ss_pred             Cc-ccchhHHHHhhhhcceEEcCC-CcEEEEec-cceEEEEecccccCCceeechH-----HH---HHHHHHhhhhccce
Confidence            00 011122223456788999996 56776654 4789999998654 33332100     00   0000000  00111


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ..--.+.||-|...+++|+..+...+|-..+.
T Consensus       338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ss  369 (460)
T COG5170         338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS  369 (460)
T ss_pred             eeeEEEEecCCcccccccccccceeeeccccC
Confidence            12345789999999999999988888875553

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.28  E-value=7.4e-06  Score=87.03  Aligned_cols=250  Identities=12%  Similarity=0.105  Sum_probs=158.7

Q ss_pred             ccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-cccCccceEEEEEeeCCCCCEEEEEEC
Q 004685           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAG  115 (737)
Q Consensus        37 ~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~l~sgs~  115 (737)
                      ..++..-.+|.||++.|.-+.|+.+.+.|-|...+|.|.||-+.++.....+ ....++.|.+++|+.+  |..++..-.
T Consensus        58 ~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d--G~kIcIvYe  135 (1189)
T KOG2041|consen   58 ASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD--GTKICIVYE  135 (1189)
T ss_pred             ccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC--CcEEEEEEc
Confidence            3444556789999999999999999999999999999999999888643332 1335678999999999  799999999


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      ||.|.+=.+.-..-  .       -..++  ......+.|+++. ..++.+-.+|.++++|-......    ..+.+|..
T Consensus       136 DGavIVGsvdGNRI--w-------gKeLk--g~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~----Kl~~~c~V  199 (1189)
T KOG2041|consen  136 DGAVIVGSVDGNRI--W-------GKELK--GQLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFER----KLEKDCEV  199 (1189)
T ss_pred             cCCEEEEeecccee--c-------chhcc--hheccceeecccH-HHHHhhhcCCcEEEecccccHHH----hhhhceEE
Confidence            99998766653110  0       01111  1223468999954 55556778899999997765322    11222222


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEe--------cCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDIS--------STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~s--------p~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (737)
                      .........          ...+..+.|.        |+. -.|+++-..|.+.|..-.+...-                
T Consensus       200 n~tg~~s~~----------~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~P----------------  252 (1189)
T KOG2041|consen  200 NGTGIFSNF----------PTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPEP----------------  252 (1189)
T ss_pred             eeeeeecCC----------CccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCCC----------------
Confidence            221111110          1123444443        443 48999999998888644322100                


Q ss_pred             ccccccCCCCcccceeEEEEcCCCCEEEEEeCC---------CeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004685          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (737)
Q Consensus       268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  338 (737)
                         .+.   ..+-.+..+.|+|+|..|++++.+         +.|.+|..- ++....+...+..++.++|.-.+-.++.
T Consensus       253 ---vv~---dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsWEg~gLriA~  325 (1189)
T KOG2041|consen  253 ---VVV---DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGLSWEGTGLRIAI  325 (1189)
T ss_pred             ---eEE---ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceeeeeEEcCCceEEEE
Confidence               000   111248889999999999999875         245555433 3444445555677777777665444433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.28  E-value=0.00051  Score=70.95  Aligned_cols=234  Identities=9%  Similarity=0.053  Sum_probs=131.8

Q ss_pred             CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEE-EEE---------CCCcEEEEecCCCCCCCCCCCCCCCce
Q 004685           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGA---------GDAEVRLFNLSRFSGRGLDDNAITPSA  141 (737)
Q Consensus        72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~-sgs---------~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (737)
                      ++|.|.|..+++.+..+..+....  .+ ++|+  +..|+ +.+         .+..|.+||..+...          +.
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spD--g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~----------~~   91 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASD--GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP----------IA   91 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc--ee-ECCC--CCEEEEEeccccccccCCCCCEEEEEECccCcE----------Ee
Confidence            799999999999998884333222  34 9999  45554 445         589999999997432          22


Q ss_pred             eecc-------CCCceeEEEEecCCCcEEEEEe-C-CCcEEEEEcCCCCCCCCCCCCCCccceEEEec--------cCCc
Q 004685          142 LYQC-------HTRRVKKLAVEVGNPHVVWSAS-E-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDL--------RCGA  204 (737)
Q Consensus       142 ~~~~-------h~~~v~~l~~~p~~~~~l~s~s-~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~--------~~~~  204 (737)
                      .+.-       .......++++|+ +++|+... . +..|.+.|+.+++.+..+..  ..|...+...        ..+.
T Consensus        92 ~i~~p~~p~~~~~~~~~~~~ls~d-gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~~~~~~~Dg~  168 (352)
T TIGR02658        92 DIELPEGPRFLVGTYPWMTSLTPD-NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDTFFMHCRDGS  168 (352)
T ss_pred             EEccCCCchhhccCccceEEECCC-CCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCccEEEeecCc
Confidence            2221       1223347899994 46665544 4 78999999999886532222  1233322211        0111


Q ss_pred             eee----------ccC---CCCCccceEE-EEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccc
Q 004685          205 KRS----------LAD---PPKQTLSLKS-CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  270 (737)
Q Consensus       205 ~~~----------~~~---~~~~~~~v~~-i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (737)
                      ...          ...   +......+.. =.|.+.++.++.+... |.|.+.|+..........        ...+...
T Consensus       169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~--------~~~~~~~  239 (352)
T TIGR02658       169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA--------IEAFTEA  239 (352)
T ss_pred             eEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecce--------eeecccc
Confidence            111          000   0000000000 0345533566666665 999999965433111100        0000000


Q ss_pred             cccCCCCcccceeEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCC
Q 004685          271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (737)
Q Consensus       271 ~~~~~~~~~~~i~~v~~sp~g~~l~~g~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~  334 (737)
                       ....+-....+.-++++|+++++++...          .+.|.++|..+.+ .......+..+..++++|+.+
T Consensus       240 -~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-vi~~i~vG~~~~~iavS~Dgk  311 (352)
T TIGR02658       240 -EKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-RLRKIELGHEIDSINVSQDAK  311 (352)
T ss_pred             -ccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-EEEEEeCCCceeeEEECCCCC
Confidence             0000111112445999999999988532          2589999999855 444555688999999999987

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.27  E-value=1.4e-05  Score=87.58  Aligned_cols=203  Identities=16%  Similarity=0.169  Sum_probs=141.2

Q ss_pred             CCCCCCChhhhhhhccccCCCC----CcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004685            3 NFPFHDGSIYDMLDTRHTDTRP----DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS   78 (737)
Q Consensus         3 ~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd   78 (737)
                      .|.|+-.+...|-...+++++.    +.+..+.-++  .++.+..+...-....|+-|+  .+++++++|...|+|.+-|
T Consensus       128 ~~~~~~~s~~~M~~~~~~~~~~~i~Gg~Q~~li~~D--l~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD  203 (1118)
T KOG1275|consen  128 VFDFTCPSMTKMASSLHMGPSTLIMGGLQEKLIHID--LNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRD  203 (1118)
T ss_pred             eecccCCCHHHHHHHhccCCcceeecchhhheeeee--cccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeec
Confidence            3566777777788888887774    3444444444  444444444433333465555  4679999999999999999


Q ss_pred             CCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---------CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004685           79 YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (737)
Q Consensus        79 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (737)
                      ..+.+.++++ ..|++.|.++...    |++|++|+.         |..|++||++....          +..+.-+.++
T Consensus       204 ~~s~~~iht~-~aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----------l~PI~~~~~P  268 (1118)
T KOG1275|consen  204 PNSFETIHTF-DAHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----------LSPIQFPYGP  268 (1118)
T ss_pred             CCcCceeeee-eccccceeeeecc----CCeEEEeecccccccccccchhhhhhhhhhhc----------cCCcccccCc
Confidence            9999999999 8999999887664    679999975         56689999997433          2222223333


Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCc
Q 004685          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH  229 (737)
Q Consensus       150 v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~  229 (737)
                       .-+.|+|.-...+++++..|...+-|..+...+.        .....             .......+.++++++. ++
T Consensus       269 -~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~--------~~~~~-------------v~p~~s~i~~fDiSsn-~~  325 (1118)
T KOG1275|consen  269 -QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP--------AGVKM-------------VNPNGSGISAFDISSN-GD  325 (1118)
T ss_pred             -hhhhhcccccceEEEEecccceeeccccccCCCc--------cceeE-------------EccCCCcceeEEecCC-Cc
Confidence             4578888777888899999999999944332110        00000             0112234888999997 68


Q ss_pred             EEEEEeCCCcEEEEECCC
Q 004685          230 LLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       230 ~l~t~s~Dg~i~iwd~~~  247 (737)
                      .++.|..+|.|.+|--+.
T Consensus       326 alafgd~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  326 ALAFGDHEGHVNLWADRP  343 (1118)
T ss_pred             eEEEecccCcEeeecCCC
Confidence            999999999999997443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.26  E-value=5.7e-05  Score=81.81  Aligned_cols=163  Identities=15%  Similarity=0.071  Sum_probs=91.8

Q ss_pred             CCceEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC--eEEEEEcccCccceEEEEEeeCCCCCEEEEEE-CCCcEEE
Q 004685           50 QGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVRL  121 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~-----dg~V~vwd~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs-~dg~I~i  121 (737)
                      .+.....+|||||+.||..+.     +-.+.+|++..+  .....+...........+|+|+  |..|+..+ .+|...|
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD--G~~Laf~s~~~g~~~l  307 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD--GTRLVFVSNKDGRPRI  307 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC--CCEEEEEECCCCCceE
Confidence            344556899999988876542     223445777653  1222331222234467899999  67666554 5676666


Q ss_pred             EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEE-eCC--CcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA-SED--GTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-s~D--g~I~vwdl~~~~~~~~~~~~~~~~~~~~~  198 (737)
                      |.+......       .....+..+...+....|+|++ +.|+.. ..+  ..|.+||+.+++..               
T Consensus       308 y~~~~~~~g-------~~~~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~---------------  364 (428)
T PRK01029        308 YIMQIDPEG-------QSPRLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDY---------------  364 (428)
T ss_pred             EEEECcccc-------cceEEeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeE---------------
Confidence            654321100       0022233344566788999955 555444 333  36888998776521               


Q ss_pred             eccCCceeeccCCCCCccceEEEEEecCCCcEEE-EEeC--CCcEEEEECCCCC
Q 004685          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGS--DAFARLYDRRMLP  249 (737)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-t~s~--Dg~i~iwd~~~~~  249 (737)
                              .+...   ...+....|+|++ +.|+ ++..  ...|.++|+..++
T Consensus       365 --------~Lt~~---~~~~~~p~wSpDG-~~L~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        365 --------QLTTS---PENKESPSWAIDS-LHLVYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             --------EccCC---CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCC
Confidence                    11111   1234568899974 5555 4433  3568888887654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.26  E-value=0.00053  Score=80.69  Aligned_cols=231  Identities=10%  Similarity=0.132  Sum_probs=141.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVW----SYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vw----d~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~  125 (737)
                      .+.|.++.+-++...|+.+..+|.|.+.    +....... .. ..-+..|.+++||||  +.+|+....+++|.+-+-.
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~V-G~vd~GI~a~~WSPD--~Ella~vT~~~~l~~mt~~  150 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IV-GSVDSGILAASWSPD--EELLALVTGEGNLLLMTRD  150 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EE-EEEcCcEEEEEECCC--cCEEEEEeCCCEEEEEecc
Confidence            4679999999999999999999999999    55544321 11 234678999999999  7999999888888774322


Q ss_pred             ----C---------CCCCC-----------CC---CCC-----CCCc------eeeccCCCceeEEEEecCCCcEEEEEe
Q 004685          126 ----R---------FSGRG-----------LD---DNA-----ITPS------ALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (737)
Q Consensus       126 ----~---------~~~~~-----------~~---~~~-----~~~~------~~~~~h~~~v~~l~~~p~~~~~l~s~s  167 (737)
                          .         +..+.           ..   .+.     ..+.      ..+. +.+.-..|+|.. ++.++|+.+
T Consensus       151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG-DG~yFAVss  228 (928)
T PF04762_consen  151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG-DGEYFAVSS  228 (928)
T ss_pred             ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC-CCcEEEEEE
Confidence                0         00000           00   000     0000      1122 344556799988 668888776


Q ss_pred             C---C---CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC---CC
Q 004685          168 E---D---GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS---DA  238 (737)
Q Consensus       168 ~---D---g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~---Dg  238 (737)
                      .   .   +.+++|+-. +...                       ....  .-.+--.+++|-|. |+++|+.-.   ..
T Consensus       229 ~~~~~~~~R~iRVy~Re-G~L~-----------------------stSE--~v~gLe~~l~WrPs-G~lIA~~q~~~~~~  281 (928)
T PF04762_consen  229 VEPETGSRRVIRVYSRE-GELQ-----------------------STSE--PVDGLEGALSWRPS-GNLIASSQRLPDRH  281 (928)
T ss_pred             EEcCCCceeEEEEECCC-ceEE-----------------------eccc--cCCCccCCccCCCC-CCEEEEEEEcCCCc
Confidence            4   2   578899854 3211                       0000  11122346899997 688888754   35


Q ss_pred             cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---cce
Q 004685          239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG---GRA  315 (737)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~---~~~  315 (737)
                      .|.+|..+..+ -..+..+.                 ......|..++|++|+..|++...|. |.+|-..+-.   +..
T Consensus       282 ~VvFfErNGLr-hgeF~l~~-----------------~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe  342 (928)
T PF04762_consen  282 DVVFFERNGLR-HGEFTLRF-----------------DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE  342 (928)
T ss_pred             EEEEEecCCcE-eeeEecCC-----------------CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE
Confidence            66677655332 11111110                 11222589999999999999988664 9999887744   112


Q ss_pred             eeeecCCCCeeeeeccC
Q 004685          316 MRYTVGDASKIMSFTPT  332 (737)
Q Consensus       316 ~~~~~~~~~~~~~~~p~  332 (737)
                      ..+........+.|+|.
T Consensus       343 i~~~~~~~~~~~~Wdpe  359 (928)
T PF04762_consen  343 IRFSSSESVNFVKWDPE  359 (928)
T ss_pred             EEccCCCCCCceEECCC
Confidence            22233444455888885

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.22  E-value=0.00054  Score=73.80  Aligned_cols=192  Identities=9%  Similarity=0.075  Sum_probs=110.8

Q ss_pred             ceEEEEEcCCCCE-EEEEeC---CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECC--CcEEEEec
Q 004685           52 CVNAISWNSKGSL-LISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD--AEVRLFNL  124 (737)
Q Consensus        52 ~V~~l~~s~~g~~-lasgs~---dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~d--g~I~iwd~  124 (737)
                      .+..-.|+|||+. ++..+.   +..|.++|+.+++.....  ..........|+|+  |..+ ++.+.+  ..|.++|+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKD--GSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCC--CCEEEEEEccCCCcEEEEEEC
Confidence            6778999999984 654433   356899999888755433  24455667889999  5554 455444  45666776


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                      ....           ...+..+........|+|++..++++....+  .|.+.|+.+++.                    
T Consensus       265 ~~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--------------------  313 (419)
T PRK04043        265 NTKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--------------------  313 (419)
T ss_pred             CCCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--------------------
Confidence            5432           2222223322345689996655666654444  466666665542                    


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---------CcEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (737)
                         ..+... +.    ....|+|++ +.++.....         ..|.+.|+.++... .+.                  
T Consensus       314 ---~rlt~~-g~----~~~~~SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT------------------  365 (419)
T PRK04043        314 ---EQVVFH-GK----NNSSVSTYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLT------------------  365 (419)
T ss_pred             ---EeCccC-CC----cCceECCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECC------------------
Confidence               112111 11    113799985 555544432         36778888765421 110                  


Q ss_pred             CCCCcccceeEEEEcCCCCEEEEEeCC-C--eEEEEEcCC
Q 004685          274 EHGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVYLMDVNH  310 (737)
Q Consensus       274 ~~~~~~~~i~~v~~sp~g~~l~~g~~d-g--~v~iwd~~~  310 (737)
                      ..+    ......|+|||+.|+....+ +  .+.+.++..
T Consensus       366 ~~~----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        366 ANG----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCC----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            000    12247899999988777653 2  466666654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=8.9e-05  Score=77.06  Aligned_cols=251  Identities=11%  Similarity=0.099  Sum_probs=136.2

Q ss_pred             ceEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCeEEEEEccc--Cccce-EEEEEeeCCCCCEEEEEECCC
Q 004685           52 CVNAISWNSKGSLLISGSD-----------DTHINVWSYSSRKLLHSIETG--HSANV-FCTKFVPETSDELVVSGAGDA  117 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~-----------dg~V~vwd~~~~~~~~~~~~~--h~~~V-~~v~~sp~~~~~~l~sgs~dg  117 (737)
                      .|.-+.|||+.++|+|=+.           -..++|||+.+|.....| ..  ....+ .-..||.+  +.++|.-.. .
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF-~~~~~~~~~WP~frWS~D--dKy~Arm~~-~  326 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF-PVIKSPYLKWPIFRWSHD--DKYFARMTG-N  326 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce-eccCCCccccceEEeccC--CceeEEecc-c
Confidence            5888999999999998653           257999999999988887 33  12222 34679998  577766655 5


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC-----CCcEEEEEcCCCCCCCCCC-----
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQGSSCPPAG-----  187 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-----Dg~I~vwdl~~~~~~~~~~-----  187 (737)
                      .|.||+......          +....-.-..|....|+| .+++||-=..     -..+.+..+.+.+.+....     
T Consensus       327 sisIyEtpsf~l----------ld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVs  395 (698)
T KOG2314|consen  327 SISIYETPSFML----------LDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVS  395 (698)
T ss_pred             eEEEEecCceee----------ecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeee
Confidence            788998764211          111111234566777887 4455542111     1123333333222211000     


Q ss_pred             --------CCCCccceE----------------EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC---CCcE
Q 004685          188 --------SSHQECRNI----------------LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS---DAFA  240 (737)
Q Consensus       188 --------~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~---Dg~i  240 (737)
                              .+..-|..+                +..++...+. + ..-.....|...+|-|.+ +.+++-+.   ..++
T Consensus       396 DckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp-v-e~velke~vi~FaWEP~g-dkF~vi~g~~~k~tv  472 (698)
T KOG2314|consen  396 DCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP-V-EVVELKESVIAFAWEPHG-DKFAVISGNTVKNTV  472 (698)
T ss_pred             ccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC-c-eeeecchheeeeeeccCC-CeEEEEEccccccce
Confidence                    000000000                0000000000 0 001123467788999974 56555443   3578


Q ss_pred             EEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCcceee
Q 004685          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMR  317 (737)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~---dg~v~iwd~~~~~~~~~~  317 (737)
                      .+|-+++.....         ..+..+         .. ...+.+.|+|.|++++++.-   .|.+.++|+.-.......
T Consensus       473 sfY~~e~~~~~~---------~lVk~~---------dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~  533 (698)
T KOG2314|consen  473 SFYAVETNIKKP---------SLVKEL---------DK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA  533 (698)
T ss_pred             eEEEeecCCCch---------hhhhhh---------cc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc
Confidence            888877421111         111111         11 14788999999999888754   689999999863333333


Q ss_pred             eecCCCCeeeeeccCCCCccCC
Q 004685          318 YTVGDASKIMSFTPTLNGLELQ  339 (737)
Q Consensus       318 ~~~~~~~~~~~~~p~~~~~~~~  339 (737)
                      .......+.+.|.|++.-+...
T Consensus       534 ~~eh~~at~veWDPtGRYvvT~  555 (698)
T KOG2314|consen  534 SPEHFAATEVEWDPTGRYVVTS  555 (698)
T ss_pred             CccccccccceECCCCCEEEEe
Confidence            3333445567788877655443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=7.1e-05  Score=74.91  Aligned_cols=89  Identities=11%  Similarity=0.229  Sum_probs=76.1

Q ss_pred             ccccceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685           39 RLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (737)
Q Consensus        39 ~~~~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  117 (737)
                      .++....+.+|...|..|+|||..+ +|..++.+.+|+|.|+++..++..+ ..+ ..+++++|.-+. ..++..|-.+|
T Consensus       182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDlde-~h~IYaGl~nG  258 (463)
T KOG1645|consen  182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLDE-RHVIYAGLQNG  258 (463)
T ss_pred             CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccCC-cceeEEeccCc
Confidence            3444557778899999999999766 8889999999999999999888887 566 889999999986 77888999999


Q ss_pred             cEEEEecCCCCCC
Q 004685          118 EVRLFNLSRFSGR  130 (737)
Q Consensus       118 ~I~iwd~~~~~~~  130 (737)
                      .|.+||++..++.
T Consensus       259 ~VlvyD~R~~~~~  271 (463)
T KOG1645|consen  259 MVLVYDMRQPEGP  271 (463)
T ss_pred             eEEEEEccCCCch
Confidence            9999999976543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.14  E-value=7.4e-06  Score=80.06  Aligned_cols=162  Identities=14%  Similarity=0.116  Sum_probs=107.9

Q ss_pred             EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004685           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (737)
Q Consensus        99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~  178 (737)
                      ++|+-+..+.. ++.+.+-.|-+-++.++-           .+.+. -.+.|.++.|.. ..++++.|+.+|.|...|++
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~-----------~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR  282 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGH-----------QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLR  282 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeeccc-----------ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEee
Confidence            36664432334 555566777787877643           23333 566788888887 55899999999999999999


Q ss_pred             CCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC---ccccc
Q 004685          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP---LTSCQ  255 (737)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~---~~~~~  255 (737)
                      ....      +...+...++               |...|++++.-...++.|++.+.+|.|++||+|..+.   +..+ 
T Consensus       283 ~rnq------G~~~~a~rly---------------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY-  340 (425)
T KOG2695|consen  283 CRNQ------GNGWCAQRLY---------------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY-  340 (425)
T ss_pred             eccc------CCCcceEEEE---------------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeee-
Confidence            8741      2223333332               4566777766553457999999999999999997654   2222 


Q ss_pred             CCCCCCCCccccccccccCCCCccc-ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcce
Q 004685          256 KRMSPPPCVNYFCPMHLSEHGRSSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  315 (737)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~  315 (737)
                                         .||... .-.-+-+.+....+++++.|...+||.++.+....
T Consensus       341 -------------------eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~  382 (425)
T KOG2695|consen  341 -------------------EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC  382 (425)
T ss_pred             -------------------ecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence                               122210 11123456777889999999999999999876433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00015  Score=78.90  Aligned_cols=165  Identities=15%  Similarity=0.170  Sum_probs=111.9

Q ss_pred             ecccCCceEEEEEcC-------------CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC---CCCE
Q 004685           46 LEGHQGCVNAISWNS-------------KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET---SDEL  109 (737)
Q Consensus        46 l~~H~~~V~~l~~s~-------------~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~---~~~~  109 (737)
                      |..|.+.|.-..+.-             +|++++||+.||+|.|-.+.+.+..+++  ....++.+++++|+-   ....
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk~  131 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSKQ  131 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhhh
Confidence            444666655555443             4999999999999999999998877776  356899999999971   1457


Q ss_pred             EEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCC
Q 004685          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (737)
Q Consensus       110 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~  189 (737)
                      +++|+..| +.++.-+-....        ....+....++|.++.|   .++++|=++.+| |++||+...+.+..+...
T Consensus       132 fv~GG~ag-lvL~er~wlgnk--------~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p  198 (846)
T KOG2066|consen  132 FVSGGMAG-LVLSERNWLGNK--------DSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPP  198 (846)
T ss_pred             eeecCcce-EEEehhhhhcCc--------cceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCC
Confidence            99999988 777754422111        12245566789999999   457887776665 999999887754322222


Q ss_pred             CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~  247 (737)
                      +.                   .+........+.|.+.  ..|+.|-. .+|+|..++.
T Consensus       199 ~~-------------------~~R~e~fpphl~W~~~--~~LVIGW~-d~v~i~~I~~  234 (846)
T KOG2066|consen  199 SQ-------------------SVRPELFPPHLHWQDE--DRLVIGWG-DSVKICSIKK  234 (846)
T ss_pred             CC-------------------CCCcccCCCceEecCC--CeEEEecC-CeEEEEEEec
Confidence            11                   1111223345778774  57777765 4688888873

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.11  E-value=0.0011  Score=66.42  Aligned_cols=221  Identities=11%  Similarity=0.048  Sum_probs=132.1

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCC
Q 004685           55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  133 (737)
Q Consensus        55 ~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~  133 (737)
                      +..|.+ ++.++++--..+.|..|+..+++.....  ...  ...+++...  +..|+.+..++ +.++|+....-    
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~--~~~--~~G~~~~~~--~g~l~v~~~~~-~~~~d~~~g~~----   72 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID--LPG--PNGMAFDRP--DGRLYVADSGG-IAVVDPDTGKV----   72 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE--SSS--EEEEEEECT--TSEEEEEETTC-EEEEETTTTEE----
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe--cCC--CceEEEEcc--CCEEEEEEcCc-eEEEecCCCcE----
Confidence            577888 7778888878999999999888654322  122  777888833  24555555544 55558775321    


Q ss_pred             CCCCCCceeec--c-CCCceeEEEEecCCCcEEEEEeCC--------CcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          134 DNAITPSALYQ--C-HTRRVKKLAVEVGNPHVVWSASED--------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       134 ~~~~~~~~~~~--~-h~~~v~~l~~~p~~~~~l~s~s~D--------g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                          ..+....  . .....+.+++.| ++++.++....        |.|..++.. ++.            ..+.    
T Consensus        73 ----~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~------------~~~~----  130 (246)
T PF08450_consen   73 ----TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV------------TVVA----  130 (246)
T ss_dssp             ----EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE------------EEEE----
T ss_pred             ----EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE------------EEEe----
Confidence                1122221  1 345678999999 55666665543        345666655 220            0111    


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC-cccccCCCCCCCCccccccccccCCCCcccc
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (737)
                                ......+.++|+|++..++++-+..+.|..|++..... +...          ..+  ..+.   .....
T Consensus       131 ----------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~----------~~~--~~~~---~~~g~  185 (246)
T PF08450_consen  131 ----------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNR----------RVF--IDFP---GGPGY  185 (246)
T ss_dssp             ----------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEE----------EEE--EE-S---SSSCE
T ss_pred             ----------cCcccccceEECCcchheeecccccceeEEEeccccccceeee----------eeE--EEcC---CCCcC
Confidence                      11234689999998544556777889999999864321 1100          000  0000   00013


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeec-cCCC
Q 004685          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLN  334 (737)
Q Consensus       282 i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-p~~~  334 (737)
                      .-.++++.+|++.++....+.|.+++.. ++...........++.++|. |+.+
T Consensus       186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~  238 (246)
T PF08450_consen  186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGK  238 (246)
T ss_dssp             EEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSS
T ss_pred             CCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCC
Confidence            6679999999988888889999999988 66555444445677888883 4433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.08  E-value=0.00035  Score=71.36  Aligned_cols=176  Identities=13%  Similarity=0.111  Sum_probs=128.6

Q ss_pred             EcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC-cEEEEecCCCCCCCCCCC
Q 004685           58 WNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-EVRLFNLSRFSGRGLDDN  135 (737)
Q Consensus        58 ~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~  135 (737)
                      |++ +|++++..|. |+..|.+...+-.++   -+|...|.-..+..+  +.-++.|..|| .+-|+|.....       
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~e-------  393 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGGE-------  393 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccC--CcceEEeccCCceEEEEecCCce-------
Confidence            444 6888988886 788888877765554   467888999999988  56899999999 89999998643       


Q ss_pred             CCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCc
Q 004685          136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT  215 (737)
Q Consensus       136 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (737)
                          +..+...-+.|.++..++ ++++++.+.....|.+.|+.++...             +++            ....
T Consensus       394 ----~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~-------------~id------------kS~~  443 (668)
T COG4946         394 ----VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVR-------------LID------------KSEY  443 (668)
T ss_pred             ----EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCee-------------Eec------------cccc
Confidence                455666778899999999 6688888888888999999988632             111            1234


Q ss_pred             cceEEEEEecCCCcEEEEEeCCC----cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC
Q 004685          216 LSLKSCDISSTRPHLLLVGGSDA----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (737)
Q Consensus       216 ~~v~~i~~sp~~~~~l~t~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g  291 (737)
                      .-|+.+.|+|+ ++++|-+--+|    .|+++|+..++......                  ..++    =-+-+|.|++
T Consensus       444 ~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT------------------~ta~----DfsPaFD~d~  500 (668)
T COG4946         444 GLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT------------------PTAY----DFSPAFDPDG  500 (668)
T ss_pred             ceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCeEEEecC------------------Cccc----ccCcccCCCC
Confidence            67899999997 68999887665    58999998766332210                  0111    1235799999


Q ss_pred             CEEEEEeC
Q 004685          292 EEVLLSYS  299 (737)
Q Consensus       292 ~~l~~g~~  299 (737)
                      ++|.--+.
T Consensus       501 ryLYfLs~  508 (668)
T COG4946         501 RYLYFLSA  508 (668)
T ss_pred             cEEEEEec
Confidence            98765543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=8.1e-05  Score=80.90  Aligned_cols=192  Identities=14%  Similarity=0.145  Sum_probs=128.7

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      ...++|++++  +++|+-|+-+|.|++++....-  .+. ..|...      ..+  |.++++|+.||+|.|-.+-+.+.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~-~~~s~~------~~~--Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTN-FDHSSS------ILE--GEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccc-cccccc------ccC--CceEEEecCCCcEEEeeccCCcc
Confidence            3567777775  6899999999999999976543  222 235433      233  89999999999999998876432


Q ss_pred             CCCCCCCCCCceeeccCCCceeEEEEecC----CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          130 RGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                                ... .....++.+++++|+    ..+.+++|+.-| +.++.-+-....                      
T Consensus       106 ----------~~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk----------------------  151 (846)
T KOG2066|consen  106 ----------ITQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK----------------------  151 (846)
T ss_pred             ----------cee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----------------------
Confidence                      122 234567899999995    245788999888 766642211100                      


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  285 (737)
                      ..+ ......+.|.++.|.   ++++|=++.+| |++||+.+.+.+..++.+...++...               --..+
T Consensus       152 ~~v-~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~---------------fpphl  211 (846)
T KOG2066|consen  152 DSV-VLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPEL---------------FPPHL  211 (846)
T ss_pred             cce-eeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCccc---------------CCCce
Confidence            000 122456889999997   46888887665 89999999888877765442222111               13347


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          286 TFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       286 ~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .|.++.+ |+.|=.| +|+|..++.
T Consensus       212 ~W~~~~~-LVIGW~d-~v~i~~I~~  234 (846)
T KOG2066|consen  212 HWQDEDR-LVIGWGD-SVKICSIKK  234 (846)
T ss_pred             EecCCCe-EEEecCC-eEEEEEEec
Confidence            7887754 7777777 888888883

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=4.8e-05  Score=77.02  Aligned_cols=220  Identities=12%  Similarity=0.059  Sum_probs=142.4

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--C-eEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-CCcEEEEec
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--R-KLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNL  124 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~--~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg~I~iwd~  124 (737)
                      |.+.|+-+.. .-.+++.+++.||.++.|--..  + +.+..+ ..|-..|.+++.+-+  +.++.|.+. |..++++|+
T Consensus         8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhF-raHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHF-RAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhh-HHHHHHHHhhhcccc--ceeEeeccCcccceeEEEe
Confidence            6777766543 3568999999999999998543  2 334445 678899999999998  788899777 999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC----cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP----HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~----~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      ...+...        ...+..-.+   .+.|....+    .+-++.-.++.+.++|-......                 
T Consensus        84 En~Dmin--------miKL~~lPg---~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-----------------  135 (558)
T KOG0882|consen   84 ENFDMIN--------MIKLVDLPG---FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-----------------  135 (558)
T ss_pred             eccchhh--------hcccccCCC---ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc-----------------
Confidence            8643211        111111122   223322122    23333445788999987665422                 


Q ss_pred             cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCC-cccccCCCCCCCCccccccccccCCCCc
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                            ...+...|..+|..+.+++. +..+++....|.|..|.... .+. ...+.........        +.+....
T Consensus       136 ------~~~fkklH~sPV~~i~y~qa-~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd--------Ly~f~K~  200 (558)
T KOG0882|consen  136 ------DGYFKKLHFSPVKKIRYNQA-GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD--------LYGFPKA  200 (558)
T ss_pred             ------cceecccccCceEEEEeecc-ccceeeccccceeEeecCCCcccCccccccccccccch--------hhccccc
Confidence                  12233457788999999997 57888888889999998873 111 1111111000000        1111112


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcce
Q 004685          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  315 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~  315 (737)
                      ....+++.|+|+|..+.+-+.|.+|+++++.+++...
T Consensus       201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             ccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence            2247889999999999999999999999999976443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.06  E-value=0.00079  Score=69.68  Aligned_cols=250  Identities=12%  Similarity=0.097  Sum_probs=151.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCC---------------cEEEEECCCCeEEEEEcccCccc--eE-EEEEeeCCCCCEEEE
Q 004685           51 GCVNAISWNSKGSLLISGSDDT---------------HINVWSYSSRKLLHSIETGHSAN--VF-CTKFVPETSDELVVS  112 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg---------------~V~vwd~~~~~~~~~~~~~h~~~--V~-~v~~sp~~~~~~l~s  112 (737)
                      ..|.-+.|+|++++|.+-+..+               .+.|||+.++..+..+ ..-..+  .. -+.|+-+  ..+++-
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf-~~~~q~~~~Wp~~k~s~~--D~y~AR  148 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF-NGISQPYLGWPVLKFSID--DKYVAR  148 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec-cccCCcccccceeeeeec--chhhhh
Confidence            4688999999999999876533               4999999999999888 444333  44 6778887  455544


Q ss_pred             EECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC-CCcEEEE-----EeCCCcEEEEEcCCCCCCCCC
Q 004685          113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWS-----ASEDGTLRQHDFRQGSSCPPA  186 (737)
Q Consensus       113 gs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s-----~s~Dg~I~vwdl~~~~~~~~~  186 (737)
                      . ....++|+++.. ....      .+...++  ...|....|+|. +...|+.     .+.++++++|.+..+..+...
T Consensus       149 v-v~~sl~i~e~t~-n~~~------~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk  218 (561)
T COG5354         149 V-VGSSLYIHEITD-NIEE------HPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK  218 (561)
T ss_pred             h-ccCeEEEEecCC-cccc------Cchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence            4 456799999732 1110      1122222  356788888885 2233432     466788999988755543100


Q ss_pred             C-------------CCCCcc-----------------ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-
Q 004685          187 G-------------SSHQEC-----------------RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-  235 (737)
Q Consensus       187 ~-------------~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-  235 (737)
                      -             .+..-|                 ...+..++..   .+.-.....+.|...+|.|.. +.+++.+ 
T Consensus       219 ~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---~i~V~~~~~~pVhdf~W~p~S-~~F~vi~g  294 (561)
T COG5354         219 NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER---SIPVEKDLKDPVHDFTWEPLS-SRFAVISG  294 (561)
T ss_pred             eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc---ccceeccccccceeeeecccC-CceeEEec
Confidence            0             000001                 1111111111   111112446789999999985 5555544 


Q ss_pred             -CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---CeEEEEEcCCC
Q 004685          236 -SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA  311 (737)
Q Consensus       236 -~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---g~v~iwd~~~~  311 (737)
                       .+..+.++|++.. ....+                      ... .-+.+.|+|.+++++.++.|   |.+.+||....
T Consensus       295 ~~pa~~s~~~lr~N-l~~~~----------------------Pe~-~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         295 YMPASVSVFDLRGN-LRFYF----------------------PEQ-KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             ccccceeecccccc-eEEec----------------------CCc-ccccccccCcccEEEEecCCccccceEEeccCCc
Confidence             7788999999864 11111                      111 34568899999999998875   68999998874


Q ss_pred             CcceeeeecCCCCeeeeeccCCCCccCCCCC
Q 004685          312 GGRAMRYTVGDASKIMSFTPTLNGLELQPPI  342 (737)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  342 (737)
                      .. ......+.......|+|+++-+......
T Consensus       351 f~-~~~~~~~~n~s~~~wspd~qF~~~~~ts  380 (561)
T COG5354         351 FK-VAGAFNGLNTSYCDWSPDGQFYDTDTTS  380 (561)
T ss_pred             eE-EEEEeecCCceEeeccCCceEEEecCCC
Confidence            32 2222234444556689987665554433

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.00  E-value=0.00084  Score=72.33  Aligned_cols=202  Identities=10%  Similarity=0.062  Sum_probs=115.0

Q ss_pred             CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCC-EEEEEEC---CCcEEEEecCCCCCCCCCCCCCCCceeeccCC
Q 004685           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHT  147 (737)
Q Consensus        72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~  147 (737)
                      ..|.+=|.+... .+.+.. . ..+..-.|+|+  |+ .++..+.   +..|.++|+..+..           ..+....
T Consensus       169 ~~l~~~d~dg~~-~~~~~~-~-~~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~~-----------~~lt~~~  232 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVK-G-GLNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGKK-----------EKIASSQ  232 (419)
T ss_pred             ceEEEECCCCCc-eeEEcc-C-CCeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCcE-----------EEEecCC
Confidence            355555655443 333422 2 37788999999  56 3554333   35588888875432           2222344


Q ss_pred             CceeEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec
Q 004685          148 RRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS  225 (737)
Q Consensus       148 ~~v~~l~~~p~~~~~l~s~s~Dg--~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  225 (737)
                      +......|+|++..++++.+.++  .|.++|+..+..                       ..+...+.   ......|+|
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-----------------------~~LT~~~~---~d~~p~~SP  286 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-----------------------TQITNYPG---IDVNGNFVE  286 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-----------------------EEcccCCC---ccCccEECC
Confidence            55667889996666666665554  466667665531                       11221111   122347999


Q ss_pred             CCCcEEEEEeCCC--cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---
Q 004685          226 TRPHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---  300 (737)
Q Consensus       226 ~~~~~l~t~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---  300 (737)
                      ++..++++....+  .|.++|+.+++.....                   ..+.     ....|+|+|++|+.....   
T Consensus       287 DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-------------------~~g~-----~~~~~SPDG~~Ia~~~~~~~~  342 (419)
T PRK04043        287 DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-------------------FHGK-----NNSSVSTYKNYIVYSSRETNN  342 (419)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCeEeCc-------------------cCCC-----cCceECCCCCEEEEEEcCCCc
Confidence            8544444443444  5777777765421110                   0011     124899999998887763   


Q ss_pred             ------CeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCC
Q 004685          301 ------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP  341 (737)
Q Consensus       301 ------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  341 (737)
                            ..|.+.|+.++.......  +.......|+|+++.+.+...
T Consensus       343 ~~~~~~~~I~v~d~~~g~~~~LT~--~~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        343 EFGKNTFNLYLISTNSDYIRRLTA--NGVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             ccCCCCcEEEEEECCCCCeEECCC--CCCcCCeEECCCCCEEEEEEc
Confidence                  368888888765433322  223345789999887777643

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.00  E-value=0.00035  Score=82.15  Aligned_cols=219  Identities=16%  Similarity=0.170  Sum_probs=132.1

Q ss_pred             cCCceEEEEEcCCCCEEEEEeC---C---CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---CCcE
Q 004685           49 HQGCVNAISWNSKGSLLISGSD---D---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEV  119 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~---d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I  119 (737)
                      +...-..|+|-.||+++|+.+.   .   ..||||+-+ |....+- ..-.+--.+++|-|.  |+++++...   ...|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPs--G~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPS--GNLIASSQRLPDRHDV  283 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCC--CCEEEEEEEcCCCcEE
Confidence            4445567999999999998764   2   478999965 5543333 222333457899999  799988865   3556


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      .+|.-+-.....       ..-.+......|..+.|++ ++.+|+....|. |.+|-..+..                |.
T Consensus       284 vFfErNGLrhge-------F~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYH----------------WY  338 (928)
T PF04762_consen  284 VFFERNGLRHGE-------FTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYH----------------WY  338 (928)
T ss_pred             EEEecCCcEeee-------EecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCE----------------EE
Confidence            666544211111       0111223556789999999 668888877655 9999877653                11


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC----CCC--------ccccc----------C-
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM----LPP--------LTSCQ----------K-  256 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~----~~~--------~~~~~----------~-  256 (737)
                      ++.    .+...  ....+..+.|+|.++..|...+.+|.+..++..-    +.-        +..+.          . 
T Consensus       339 LKq----ei~~~--~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a  412 (928)
T PF04762_consen  339 LKQ----EIRFS--SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA  412 (928)
T ss_pred             EEE----EEEcc--CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc
Confidence            110    01110  1122334788888777777777767766555421    100        00000          0 


Q ss_pred             CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ..+||.+...+         .-..+|..++|++++..+++-..||.|.+|.....
T Consensus       413 ~VPPPMs~~~l---------~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  413 VVPPPMSSYEL---------ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             CCCchHhceEE---------cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            01122111111         11236999999999988999999999999997664

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.96  E-value=0.0032  Score=62.93  Aligned_cols=190  Identities=14%  Similarity=0.158  Sum_probs=116.8

Q ss_pred             eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEEcc---c-CccceEEEEEeeCCCCCEEEEEECC--------CcE
Q 004685           53 VNAISWN-SKGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVPETSDELVVSGAGD--------AEV  119 (737)
Q Consensus        53 V~~l~~s-~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~---~-h~~~V~~v~~sp~~~~~~l~sgs~d--------g~I  119 (737)
                      ...+++. +++.+++ +... .+.++|..+++....+..   . .....+++++.|+  |++.++....        |.|
T Consensus        42 ~~G~~~~~~~g~l~v-~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYV-ADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEEECTTSEEEE-EETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEE
T ss_pred             CceEEEEccCCEEEE-EEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccce
Confidence            6678888 5655555 4443 556669988865443321   1 3467889999999  7888877654        445


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      ..++.. ..           ...+...-...+.|+|+|++..++++-+..+.|..+++......       ......+.+
T Consensus       118 ~~~~~~-~~-----------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-------~~~~~~~~~  178 (246)
T PF08450_consen  118 YRIDPD-GK-----------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-------LSNRRVFID  178 (246)
T ss_dssp             EEEETT-SE-----------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-------EEEEEEEEE
T ss_pred             EEECCC-Ce-----------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc-------eeeeeeEEE
Confidence            555554 11           22233334557899999966556667788899999998754320       000111111


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                                 ..........+++..+ +++.++....+.|.++|.+ ++.+..+..+                   .  
T Consensus       179 -----------~~~~~g~pDG~~vD~~-G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-------------------~--  224 (246)
T PF08450_consen  179 -----------FPGGPGYPDGLAVDSD-GNLWVADWGGGRIVVFDPD-GKLLREIELP-------------------V--  224 (246)
T ss_dssp             ------------SSSSCEEEEEEEBTT-S-EEEEEETTTEEEEEETT-SCEEEEEE-S-------------------S--
T ss_pred             -----------cCCCCcCCCcceEcCC-CCEEEEEcCCCEEEEECCC-ccEEEEEcCC-------------------C--
Confidence                       1222235778999986 5788887889999999988 6655444211                   0  


Q ss_pred             cceeEEEEc-CCCCEEEEEeC
Q 004685          280 LHLTHVTFS-PNGEEVLLSYS  299 (737)
Q Consensus       280 ~~i~~v~~s-p~g~~l~~g~~  299 (737)
                      ..+++++|. |+...|++.+.
T Consensus       225 ~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  225 PRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             SSEEEEEEESTTSSEEEEEEB
T ss_pred             CCEEEEEEECCCCCEEEEEeC
Confidence            148999994 77777776553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>smart00320 WD40 WD40 repeats

Probab=97.95  E-value=2.3e-05  Score=52.02  Aligned_cols=39  Identities=36%  Similarity=0.553  Sum_probs=36.4

Q ss_pred             ccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEc
Q 004685          659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT  697 (737)
Q Consensus       659 ~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~  697 (737)
                      ++++..+.+|...|+++.|+|.+.++++++.|+.|++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            567888999999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.94  E-value=5.2e-06  Score=87.51  Aligned_cols=210  Identities=12%  Similarity=0.173  Sum_probs=133.0

Q ss_pred             CCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEE-EEEcccCccceEEEEEeeCCCCCEEEEEE----CCCcEEEE
Q 004685           50 QGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRKLL-HSIETGHSANVFCTKFVPETSDELVVSGA----GDAEVRLF  122 (737)
Q Consensus        50 ~~~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~~~~~-~~~~~~h~~~V~~v~~sp~~~~~~l~sgs----~dg~I~iw  122 (737)
                      ...+.|+++..+  ...++.|..+|.|-+-.+....-- +.+..+|..++++++|++-. .+.||.|-    .|..+.||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD-tn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD-TNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccccc-HHHHHhhhhhhcccCCccce
Confidence            456788887763  458899999999999887643322 33436788999999999963 46777773    36789999


Q ss_pred             ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                      |+...-..+.+    .+...- +......+++|.. +.+++.+|...+.++++|++.....                   
T Consensus       135 di~s~ltvPke----~~~fs~-~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~-------------------  189 (783)
T KOG1008|consen  135 DINSLLTVPKE----SPLFSS-STLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDS-------------------  189 (783)
T ss_pred             ecccccCCCcc----cccccc-ccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhh-------------------
Confidence            99864221111    111111 1334456888885 6678889998899999999954311                   


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEE-CCCCC-CcccccCCCCCCCCccccccccccCCCCccc
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD-RRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (737)
                        ...     -.+..+..+..+|-.+++++.-. ||.|-+|| .+..+ ++..+...                 ......
T Consensus       190 --~~s-----vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~-----------------~N~~~~  244 (783)
T KOG1008|consen  190 --VSS-----VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRN-----------------ENKKPK  244 (783)
T ss_pred             --hhh-----hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhC-----------------CCCccc
Confidence              000     11234566777786567777665 99999999 44322 22222111                 001111


Q ss_pred             ceeEEEEcCCCC-EEEEEeC-CCeEEEEEcCC
Q 004685          281 HLTHVTFSPNGE-EVLLSYS-GEHVYLMDVNH  310 (737)
Q Consensus       281 ~i~~v~~sp~g~-~l~~g~~-dg~v~iwd~~~  310 (737)
                      .+..++|+|... .+++... .++|+.+|+..
T Consensus       245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  245 QLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            488899999532 2444444 67999999876

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.00095  Score=73.43  Aligned_cols=220  Identities=13%  Similarity=0.174  Sum_probs=132.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccc-eEEEEEeeCCCCCEEEEEECCCc-----EEEEecC
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDAE-----VRLFNLS  125 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~dg~-----I~iwd~~  125 (737)
                      .|+|  |++.+..+|.|+.+|.|.+.+- .-+.+..| +.+... |..+.....  .++|++.+.|+.     |+||++.
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~f-qa~~~siv~~L~~~~~--~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGF-QAYEQSIVQFLYILNK--QNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecc-cceeeehh-eecchhhhhHhhcccC--ceEEEEEeecCCCCceEEEEeccc
Confidence            5655  6788999999999999988873 33445667 566666 555544443  468888887754     8999998


Q ss_pred             CCCCCCCCCCCCCCc--eeecc-----CCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685          126 RFSGRGLDDNAITPS--ALYQC-----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~--~~~~~-----h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~  198 (737)
                      ..++...    ..++  ..+..     ...++.+++.+. +-..+|+|-.+|.|..+.=.-.+         ..+..   
T Consensus       101 k~~~n~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~R---------Drgsr---  163 (933)
T KOG2114|consen  101 KVDKNNS----PQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILR---------DRGSR---  163 (933)
T ss_pred             ccCCCCC----cceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchh---------ccccc---
Confidence            6532210    1112  11112     356788999988 56889999999999988422111         00001   


Q ss_pred             eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                               ..-......+|+++.+..+....+.++. -..|.+|.+....+....                    ..+.
T Consensus       164 ---------~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~--------------------ld~~  213 (933)
T KOG2114|consen  164 ---------QDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKV--------------------LDNN  213 (933)
T ss_pred             ---------eeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceee--------------------eccC
Confidence                     1111233578999999887433233333 467889988733211110                    2244


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCee
Q 004685          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKI  326 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  326 (737)
                      +..+.|..+++....+++++ +..+++|+... ..+...+..++....
T Consensus       214 G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~-~~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  214 GISLNCSSFSDGTYQFICAG-SEFLYFYDSDG-RGPCFAFEVGEKKEM  259 (933)
T ss_pred             CccceeeecCCCCccEEEec-CceEEEEcCCC-cceeeeecCCCeEEE
Confidence            44688888887555455444 44899999875 444444444443333

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.90  E-value=0.0012  Score=70.19  Aligned_cols=138  Identities=15%  Similarity=0.156  Sum_probs=96.1

Q ss_pred             cccccccccccccccceeecccCCceEEEEEcC-CCCEEEEE----eCCCcE----EEEECCCCe--EEEEEcccCccce
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISG----SDDTHI----NVWSYSSRK--LLHSIETGHSANV   96 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasg----s~dg~V----~vwd~~~~~--~~~~~~~~h~~~V   96 (737)
                      ..+-++.....+++.+..++--.++ .++.||. +...+.|.    +.+|.+    .+|++...+  .+........+.|
T Consensus       184 aNl~L~~~~~~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v  262 (545)
T PF11768_consen  184 ANLHLLSCSGGKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQV  262 (545)
T ss_pred             ccEEEEEecCCcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcc
Confidence            3555666555566666666655555 5788887 44555543    334443    467765543  2222223577899


Q ss_pred             EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (737)
Q Consensus        97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd  176 (737)
                      .|++++|+  .+.|+.|+.||.|.+||.....            ..+....-.++.++|+| ++.++++|+..|.+.+||
T Consensus       263 ~~ca~sp~--E~kLvlGC~DgSiiLyD~~~~~------------t~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  263 ICCARSPS--EDKLVLGCEDGSIILYDTTRGV------------TLLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFD  327 (545)
T ss_pred             eEEecCcc--cceEEEEecCCeEEEEEcCCCe------------eeeeeecccceEEEEcC-CCcEEEEEcCCceEEEEE
Confidence            99999999  6999999999999999997532            22223445578899999 668999999999999999


Q ss_pred             cCCCC
Q 004685          177 FRQGS  181 (737)
Q Consensus       177 l~~~~  181 (737)
                      +.-..
T Consensus       328 ~ALsp  332 (545)
T PF11768_consen  328 MALSP  332 (545)
T ss_pred             eecCc
Confidence            87654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.87  E-value=0.0015  Score=64.21  Aligned_cols=231  Identities=14%  Similarity=0.139  Sum_probs=117.9

Q ss_pred             ceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEE
Q 004685           43 ERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~i  121 (737)
                      .+.+.+-...+.+|+|+|+.. ++++....+.|...+. +|+.+..+........-.|++..+  +.++++.-.++.+.+
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN--GRYVLSEERDQRLYI   90 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence            356777667799999999755 6666777888888886 477777774333466888999876  555555556899999


Q ss_pred             EecCCCCCCCCCCCCCCC--ceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          122 FNLSRFSGRGLDDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      +++........ ......  +.....+...+-.++|+|.+..++ .+-......++.+......       . .......
T Consensus        91 ~~~~~~~~~~~-~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~-------~-~~~~~~~  160 (248)
T PF06977_consen   91 FTIDDDTTSLD-RADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGG-------F-DLFVSDD  160 (248)
T ss_dssp             EEE----TT---EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-S-------S---EEEE-
T ss_pred             EEEeccccccc-hhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCc-------c-ceeeccc
Confidence            99854222110 000000  011123455688999999655555 5555666677776642100       0 0000000


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                            ..+.........+.+++++|..+.+++.+..+..|.++| ..++++..+......          +  +-...-
T Consensus       161 ------~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~----------~--gl~~~~  221 (248)
T PF06977_consen  161 ------QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF----------H--GLSKDI  221 (248)
T ss_dssp             ------HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG----------G--G-SS--
T ss_pred             ------cccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc----------c--Cccccc
Confidence                  001101122345788999998888999998999999999 455544433211000          0  000111


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg~v~iw  306 (737)
                      ...-.|+|.++|. |++.+.-+..++|
T Consensus       222 ~QpEGIa~d~~G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  222 PQPEGIAFDPDGN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             -SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred             CCccEEEECCCCC-EEEEcCCceEEEe
Confidence            2367799999996 5666666676665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.77  E-value=9.5e-06  Score=85.58  Aligned_cols=171  Identities=21%  Similarity=0.303  Sum_probs=117.5

Q ss_pred             ceeecccCCceEEEEEcC-CCCEEEEEe----CCCcEEEEECCCCe----EEEEEcccCccceEEEEEeeCCCCCEEEEE
Q 004685           43 ERELEGHQGCVNAISWNS-KGSLLISGS----DDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSG  113 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~-~g~~lasgs----~dg~V~vwd~~~~~----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg  113 (737)
                      .....+|..++++++|++ |.+.||.|-    .|-.+.|||+.++-    ....|..+......+++|..+  ..++++|
T Consensus        95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd--~klvlaG  172 (783)
T KOG1008|consen   95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD--TKLVLAG  172 (783)
T ss_pred             ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccC--cchhhcc
Confidence            344567888999999998 778888883    46779999998761    222332224456678889876  5788899


Q ss_pred             ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE-cCCCCCCCCCCCCCCc
Q 004685          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD-FRQGSSCPPAGSSHQE  192 (737)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd-l~~~~~~~~~~~~~~~  192 (737)
                      .....++++|++....           ....-.+..+..+.++|-.++++++ ..||.|.+|| .++-+.+..       
T Consensus       173 m~sr~~~ifdlRqs~~-----------~~~svnTk~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~-------  233 (783)
T KOG1008|consen  173 MTSRSVHIFDLRQSLD-----------SVSSVNTKYVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQ-------  233 (783)
T ss_pred             cccchhhhhhhhhhhh-----------hhhhhhhhhcccceecCCCCCceec-cccCceeeccchhhhccHHH-------
Confidence            8899999999995322           2222345566778888877788854 5599999999 444332200       


Q ss_pred             cceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC-CcEEEEECCC
Q 004685          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRM  247 (737)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-g~i~iwd~~~  247 (737)
                                   ..+.........+..++|.|....++++...| ++|+.||+..
T Consensus       234 -------------~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  234 -------------IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             -------------HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence                         01111222334688999999877778877755 7999999863

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.65  E-value=0.015  Score=58.27  Aligned_cols=219  Identities=11%  Similarity=0.102  Sum_probs=132.0

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCeEEEEEcccCccc--eEEEEEeeCCCCCEEEEEEC-----CCcEEEEe
Q 004685           53 VNAISWNS-KGSLLISGSDDTH-INVWSYSSRKLLHSIETGHSAN--VFCTKFVPETSDELVVSGAG-----DAEVRLFN  123 (737)
Q Consensus        53 V~~l~~s~-~g~~lasgs~dg~-V~vwd~~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~~l~sgs~-----dg~I~iwd  123 (737)
                      ...++.+| .+..++.+-.-|+ ..+||..+++....+ ......  --.-.|+++  |.+|++.-.     .|.|-|||
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-~a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-WAPPGRHFYGHGVFSPD--GRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-cCCCCCEEecCEEEcCC--CCEEEEeccccCCCcEEEEEEE
Confidence            34678888 5667777877666 578999999888776 222221  124679999  788887643     58899999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC-------CCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004685          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-------DGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (737)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-------Dg~I~vwdl~~~~~~~~~~~~~~~~~~~  196 (737)
                      ....         +..+..+..|.-....+.+.|+ +..|+.+.-       .|.-++ ++.+.           .....
T Consensus        84 ~~~~---------~~ri~E~~s~GIGPHel~l~pD-G~tLvVANGGI~Thpd~GR~kL-Nl~tM-----------~psL~  141 (305)
T PF07433_consen   84 AARG---------YRRIGEFPSHGIGPHELLLMPD-GETLVVANGGIETHPDSGRAKL-NLDTM-----------QPSLV  141 (305)
T ss_pred             CcCC---------cEEEeEecCCCcChhhEEEcCC-CCEEEEEcCCCccCcccCceec-Chhhc-----------CCceE
Confidence            9831         2336667777777788999994 455555421       122221 22222           23345


Q ss_pred             EEeccCCceeeccCC--CCCccceEEEEEecCCCcEEEEEeCCCc-------EEEEECCCCCCcccccCCCCCCCCcccc
Q 004685          197 LLDLRCGAKRSLADP--PKQTLSLKSCDISSTRPHLLLVGGSDAF-------ARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (737)
Q Consensus       197 ~~~~~~~~~~~~~~~--~~~~~~v~~i~~sp~~~~~l~t~s~Dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (737)
                      +.+..++........  ..|...+..+++.++ +..++..-..|.       |-+++..  ..+..+..+          
T Consensus       142 ~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p----------  208 (305)
T PF07433_consen  142 YLDARSGALLEQVELPPDLHQLSIRHLAVDGD-GTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAP----------  208 (305)
T ss_pred             EEecCCCceeeeeecCccccccceeeEEecCC-CcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCC----------
Confidence            566666766555555  447788999999986 333333322221       2222221  111111100          


Q ss_pred             ccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc
Q 004685          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGG  313 (737)
Q Consensus       268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~  313 (737)
                         ......- ...|-+|++++++.++++.+- .+.+.+||..++..
T Consensus       209 ---~~~~~~l-~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~  251 (305)
T PF07433_consen  209 ---EEQWRRL-NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL  251 (305)
T ss_pred             ---hHHHHhh-CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence               0000011 124899999999998877777 67999999999763

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.63  E-value=0.00035  Score=74.12  Aligned_cols=74  Identities=15%  Similarity=0.206  Sum_probs=63.8

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~  126 (737)
                      .....|.|++++|+.+.|+.|..||.|.+||...+.....   ...-..+.++|+|+  |.+|++|+..|.+.+||+..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~--gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPD--GAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCC--CcEEEEEcCCceEEEEEeec
Confidence            4677899999999999999999999999999887643322   24566889999999  79999999999999999984

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0027  Score=63.93  Aligned_cols=97  Identities=14%  Similarity=0.194  Sum_probs=76.6

Q ss_pred             EEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEE
Q 004685           74 INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL  153 (737)
Q Consensus        74 V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  153 (737)
                      |++.+..+.+... +...+...|.+++|+|.. ..++..++.+..|+|.|+.+...          +..+..+ ..++++
T Consensus       175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~-~GLl~~asl~nkiki~dlet~~~----------vssy~a~-~~~wSC  241 (463)
T KOG1645|consen  175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFN-EGLLGLASLGNKIKIMDLETSCV----------VSSYIAY-NQIWSC  241 (463)
T ss_pred             eEEeccCCcchhh-cccccchhhhhhccCccc-cceeeeeccCceEEEEeccccee----------eeheecc-CCceee
Confidence            5555555555544 336788999999999985 34889999999999999996332          4445555 789999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          154 AVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       154 ~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      +|+-++.++++.|-..|.|.+||++..+.+
T Consensus       242 ~wDlde~h~IYaGl~nG~VlvyD~R~~~~~  271 (463)
T KOG1645|consen  242 CWDLDERHVIYAGLQNGMVLVYDMRQPEGP  271 (463)
T ss_pred             eeccCCcceeEEeccCceEEEEEccCCCch
Confidence            999988899999999999999999987654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.60  E-value=0.1  Score=56.25  Aligned_cols=201  Identities=11%  Similarity=0.040  Sum_probs=108.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceE------EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCC
Q 004685           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF------CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (737)
Q Consensus        61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~------~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~  134 (737)
                      .+..++.++.++.|.-+|..+|+.+..........+.      -+.-.|--.+..++.++.+|.+..+|..+++..    
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~----  143 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVA----  143 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCc----
Confidence            4567888888899999999999988776322111000      000011001356777888999999998865432    


Q ss_pred             CCCCCceeeccCCCcee-EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC
Q 004685          135 NAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  213 (737)
Q Consensus       135 ~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (737)
                            ...... ..+. +....  + ..++.+..++.+..+|..+++..              |........ + ....
T Consensus       144 ------W~~~~~-~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~~--------------W~~~~~~~~-~-~~~~  197 (394)
T PRK11138        144 ------WQTKVA-GEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAVK--------------WTVNLDVPS-L-TLRG  197 (394)
T ss_pred             ------ccccCC-CceecCCEEE--C-CEEEEECCCCEEEEEEccCCCEe--------------eeecCCCCc-c-cccC
Confidence                  111111 1111 11221  3 35556778899999999988732              332211000 0 0000


Q ss_pred             CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC--CC
Q 004685          214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NG  291 (737)
Q Consensus       214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp--~g  291 (737)
                      ...++    ..  + ..++.++.++.+..+|..+++.+-..........              ........+.-+|  .+
T Consensus       198 ~~sP~----v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~--------------~~~~~~~~~~~sP~v~~  256 (394)
T PRK11138        198 ESAPA----TA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA--------------TEIDRLVDVDTTPVVVG  256 (394)
T ss_pred             CCCCE----EE--C-CEEEEEcCCCEEEEEEccCChhhheeccccCCCc--------------cchhcccccCCCcEEEC
Confidence            00111    11  1 3567777889999999988876544321110000              0000011111122  35


Q ss_pred             CEEEEEeCCCeEEEEEcCCCC
Q 004685          292 EEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       292 ~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      ..+++++.+|.++.+|..+++
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~  277 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQ  277 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCC
Confidence            568888889999999999875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.55  E-value=0.0069  Score=60.12  Aligned_cols=194  Identities=16%  Similarity=0.138  Sum_probs=110.0

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCC
Q 004685           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (737)
Q Consensus        60 ~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~  139 (737)
                      +++..+++++.++.|..||..+|+.+..+. . ...+.......   +..++.+..++.|..+|..++..          
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~-~~~~~~~~~~~---~~~v~v~~~~~~l~~~d~~tG~~----------   98 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFD-L-PGPISGAPVVD---GGRVYVGTSDGSLYALDAKTGKV----------   98 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEE-C-SSCGGSGEEEE---TTEEEEEETTSEEEEEETTTSCE----------
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEee-c-cccccceeeec---ccccccccceeeeEecccCCcce----------
Confidence            356777878899999999999999888873 2 22222212222   46777777888999999776432          


Q ss_pred             ceee-ccC----C-CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC
Q 004685          140 SALY-QCH----T-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  213 (737)
Q Consensus       140 ~~~~-~~h----~-~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (737)
                      +... ...    . .......+.   +..++.+..++.|..+|+++++.+              |........ ......
T Consensus        99 ~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~--------------w~~~~~~~~-~~~~~~  160 (238)
T PF13360_consen   99 LWSIYLTSSPPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLL--------------WKYPVGEPR-GSSPIS  160 (238)
T ss_dssp             EEEEEE-SSCTCSTB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEE--------------EEEESSTT--SS--EE
T ss_pred             eeeeccccccccccccccCceEe---cCEEEEEeccCcEEEEecCCCcEE--------------EEeecCCCC-CCccee
Confidence            2221 111    1 111223332   466777888999999999998632              222111000 000000


Q ss_pred             CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCE
Q 004685          214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE  293 (737)
Q Consensus       214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~  293 (737)
                      ....+..-....+ + .++.++.++.+..+|+.+++.+-...                      .. .+.. ....++..
T Consensus       161 ~~~~~~~~~~~~~-~-~v~~~~~~g~~~~~d~~tg~~~w~~~----------------------~~-~~~~-~~~~~~~~  214 (238)
T PF13360_consen  161 SFSDINGSPVISD-G-RVYVSSGDGRVVAVDLATGEKLWSKP----------------------IS-GIYS-LPSVDGGT  214 (238)
T ss_dssp             EETTEEEEEECCT-T-EEEEECCTSSEEEEETTTTEEEEEEC----------------------SS--ECE-CEECCCTE
T ss_pred             eecccccceEEEC-C-EEEEEcCCCeEEEEECCCCCEEEEec----------------------CC-CccC-CceeeCCE
Confidence            0011122222222 3 66677777754444998876321110                      00 1222 14567888


Q ss_pred             EEEEeCCCeEEEEEcCCCC
Q 004685          294 VLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       294 l~~g~~dg~v~iwd~~~~~  312 (737)
                      |++++.++.|.+||+.+++
T Consensus       215 l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  215 LYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             EEEEETTTEEEEEETTTTE
T ss_pred             EEEEeCCCEEEEEECCCCC
Confidence            8888899999999999975

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.49  E-value=0.012  Score=58.92  Aligned_cols=175  Identities=17%  Similarity=0.208  Sum_probs=94.3

Q ss_pred             EEEcCCCCEEEEEe-----CCCcEEEEECC-CCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-------CCcEEEE
Q 004685           56 ISWNSKGSLLISGS-----DDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-------DAEVRLF  122 (737)
Q Consensus        56 l~~s~~g~~lasgs-----~dg~V~vwd~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-------dg~I~iw  122 (737)
                      -.||+||++|++.-     ..|.|-|||.. +-+.+..+ ..|.-.-..+.+.|+  +..|+.+-.       .|.-++ 
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kL-  131 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKL-  131 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceec-
Confidence            46999999999863     45889999999 66778888 677777888999999  666666521       122222 


Q ss_pred             ecCCCCCCC--CCCCCCCCc--eee--ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004685          123 NLSRFSGRG--LDDNAITPS--ALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (737)
Q Consensus       123 d~~~~~~~~--~~~~~~~~~--~~~--~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~  196 (737)
                      ++.+.+...  .+...-+.+  ..+  ..|...|..+++.+ ++..++..=..|       ......+           .
T Consensus       132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg-------~~~~~~P-----------L  192 (305)
T PF07433_consen  132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQG-------DPGDAPP-----------L  192 (305)
T ss_pred             ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCC-------CCCccCC-----------e
Confidence            111111000  000000111  123  23566777777776 333333222211       1111110           1


Q ss_pred             EEeccCCceeeccCC-----CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004685          197 LLDLRCGAKRSLADP-----PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (737)
Q Consensus       197 ~~~~~~~~~~~~~~~-----~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~  253 (737)
                      +.-.+.+........     ......+-+|++++++....+|+=..+.+.+||..++..+..
T Consensus       193 va~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~  254 (305)
T PF07433_consen  193 VALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS  254 (305)
T ss_pred             EEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence            111111111111111     123467889999997533445555778999999999876544

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.47  E-value=0.0098  Score=64.45  Aligned_cols=123  Identities=16%  Similarity=0.222  Sum_probs=89.4

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      |...|.--+++..+++|+.|+.-|.|.+|+-..++....-..+-...+..+..+++  ..++|.|+..|.|.++.++...
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch--hHhhhhhcCCceEEeehhhccC
Confidence            44455555667788999999999999999988776543321233455566667777  5888999999999999988632


Q ss_pred             CCCCCCCCCCCce-eeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685          129 GRGLDDNAITPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (737)
Q Consensus       129 ~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~  179 (737)
                      ....     ..+. .-+.|...|++++|++ ++..+++|..-|.|.+-.+..
T Consensus       110 p~~~-----~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 PRDL-----DYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCcc-----eeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence            2110     1111 1223788999999999 668888999999999988877

>smart00320 WD40 WD40 repeats

Probab=97.39  E-value=0.00033  Score=46.12  Aligned_cols=38  Identities=34%  Similarity=0.688  Sum_probs=34.3

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS   78 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd   78 (737)
                      ++...+..|...|+++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45677788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.37  E-value=0.026  Score=64.96  Aligned_cols=212  Identities=10%  Similarity=0.076  Sum_probs=128.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC--CCC
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS--RFS  128 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~--~~~  128 (737)
                      +.|.++.|..+++-++.+..+|.|.+-|.++......  ..-...|.+++|+|+  +..++..+.++++.+=+-.  ...
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~D--ee~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--GNVDNGISAASWSPD--EELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeee--eeccCceEEEeecCC--CcEEEEEeCCcEEEEEeccccchh
Confidence            5899999999999999999999999999887653322  234688999999999  7888888887777663321  000


Q ss_pred             CCCC--CCC-CCCC--------ceeec------------------c---CCCceeEEEEecCCCcEEEEE-----eCCCc
Q 004685          129 GRGL--DDN-AITP--------SALYQ------------------C---HTRRVKKLAVEVGNPHVVWSA-----SEDGT  171 (737)
Q Consensus       129 ~~~~--~~~-~~~~--------~~~~~------------------~---h~~~v~~l~~~p~~~~~l~s~-----s~Dg~  171 (737)
                      .+..  +.. ..+.        ...+.                  +   ..+.=++|.|.- ++.++++.     ...+.
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCcee
Confidence            0000  000 0000        00000                  0   111224588876 66788773     22379


Q ss_pred             EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEE---eCCCcEEEEECCCC
Q 004685          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG---GSDAFARLYDRRML  248 (737)
Q Consensus       172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~---s~Dg~i~iwd~~~~  248 (737)
                      |++||-. +....                       .  .......-.+++|-|. |.++++-   .+|+.|.+|..+..
T Consensus       224 irV~drE-g~Lns-----------------------~--se~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  224 IRVYDRE-GALNS-----------------------T--SEPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             EEEeccc-chhhc-----------------------c--cCcccccccceeecCC-CCeEeeeeecCCCCcEEEEecCCc
Confidence            9999976 33110                       0  0011223357889996 5777765   34667989977643


Q ss_pred             CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEE---EeCCCeEEEEEcCCCC
Q 004685          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL---SYSGEHVYLMDVNHAG  312 (737)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~---g~~dg~v~iwd~~~~~  312 (737)
                      .. ..+..+.                ..... .|..++|+.++..|++   ......|++|-+.+-.
T Consensus       277 ~h-g~f~l~~----------------p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  277 RH-GEFVLPF----------------PLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cc-cccccCC----------------ccccc-chheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            21 1110000                00111 3889999999999888   4445569999887743

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.36  E-value=0.00025  Score=77.69  Aligned_cols=188  Identities=20%  Similarity=0.170  Sum_probs=120.6

Q ss_pred             EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (737)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  163 (737)
                      ....| ..|+...+|++|+-+  .+.|+.|+..|.|++|++.++..          .....+|.+.|+-+.-+.++...|
T Consensus      1093 ~w~~f-rd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG~~----------e~s~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1093 SWRSF-RDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSGSM----------EESVNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred             cchhh-hccccceeeEEeecC--CceEEeeeccceEEEEEccCccc----------cccccccccccccccccCCcceee
Confidence            34455 678899999999998  69999999999999999987543          456778999999999888555555


Q ss_pred             EEEeCCC-cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685          164 WSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (737)
Q Consensus       164 ~s~s~Dg-~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i  242 (737)
                      .+++... -..+|++......                        ..    ....-.++.|+.. .+.-+.|..-....+
T Consensus      1160 tsss~S~PlsaLW~~~s~~~~------------------------~H----sf~ed~~vkFsn~-~q~r~~gt~~d~a~~ 1210 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGP------------------------RH----SFDEDKAVKFSNS-LQFRALGTEADDALL 1210 (1516)
T ss_pred             eeccccCchHHHhccccccCc------------------------cc----cccccceeehhhh-HHHHHhcccccceEE
Confidence            4444443 5678988763211                        00    0123356777765 344445555567889


Q ss_pred             EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCC
Q 004685          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD  322 (737)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~  322 (737)
                      ||+.+..++.++..+.-                 ...+.-+++.|+|+..+++-   ||  .+||++.......+-... 
T Consensus      1211 YDvqT~~~l~tylt~~~-----------------~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft- 1267 (1516)
T KOG1832|consen 1211 YDVQTCSPLQTYLTDTV-----------------TSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFT- 1267 (1516)
T ss_pred             EecccCcHHHHhcCcch-----------------hhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhe-
Confidence            99999887655432110                 11112366889999887653   33  579999864333322211 


Q ss_pred             CCeeeeeccCCCCc
Q 004685          323 ASKIMSFTPTLNGL  336 (737)
Q Consensus       323 ~~~~~~~~p~~~~~  336 (737)
                      ....-.|+|.+..+
T Consensus      1268 ~~~~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1268 DYGGGGFHPSGNEV 1281 (1516)
T ss_pred             ecccccccCCCceE
Confidence            22223467765544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.23  E-value=0.0019  Score=70.73  Aligned_cols=71  Identities=11%  Similarity=0.221  Sum_probs=62.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (737)
Q Consensus        53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~  126 (737)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+.- +....|..+|..+.|+|+  |..++++..-|.|.+|....
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-tv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-TVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceee-eeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence            567999999999999999999999998776544 443789999999999999  89999999999999998874

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.039  Score=61.28  Aligned_cols=177  Identities=16%  Similarity=0.212  Sum_probs=110.7

Q ss_pred             cccccceeecccCCc-eEEEEEcCCCCEEEEEeCCCc-----EEEEECCCC------eEE--EEEc----ccCccceEEE
Q 004685           38 RRLSQERELEGHQGC-VNAISWNSKGSLLISGSDDTH-----INVWSYSSR------KLL--HSIE----TGHSANVFCT   99 (737)
Q Consensus        38 ~~~~~~~~l~~H~~~-V~~l~~s~~g~~lasgs~dg~-----V~vwd~~~~------~~~--~~~~----~~h~~~V~~v   99 (737)
                      ++++..+.|+.+... |..+-.-.+..+|++-+.|+.     |+||+++..      +++  +.+.    .....++.++
T Consensus        52 ~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l  131 (933)
T KOG2114|consen   52 SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSL  131 (933)
T ss_pred             ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEE
Confidence            555666778888777 444443334478888877655     899999753      222  1110    1235788999


Q ss_pred             EEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (737)
Q Consensus       100 ~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~  179 (737)
                      +.+.+  -..+|.|-.||.|..+.-.-...+.      ........-..+|+.+++..+....++++. ...|.+|.+..
T Consensus       132 ~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrg------sr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~g  202 (933)
T KOG2114|consen  132 AVSED--LKTIVCGFTNGLVICYKGDILRDRG------SRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSG  202 (933)
T ss_pred             EEEcc--ccEEEEEecCcEEEEEcCcchhccc------cceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecC
Confidence            99998  6889999999999998644221111      112223335679999999875544343443 35799999884


Q ss_pred             CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      .. +                       .......+...++|..|++..++ +++++ +..+.+||.....
T Consensus       203 r~-p-----------------------~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  203 RT-P-----------------------SLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             CC-c-----------------------ceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCcc
Confidence            33 1                       11112235567889999986433 44443 4679999887443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.11  E-value=0.034  Score=46.42  Aligned_cols=101  Identities=18%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           53 VNAISWNS---KG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        53 V~~l~~s~---~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      |++|++..   +| +.|+.|+.|..||||+-+  +.+..+  .-.+.|+++.-...   ..|+.+..+|+|-+|+-... 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--~e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~~R-   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--TETDKVTSLCSLGG---GRFAYALANGTVGVYDRSQR-   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--ecccceEEEEEcCC---CEEEEEecCCEEEEEeCcce-
Confidence            67777765   33 579999999999999854  556666  24577888877765   68999999999999986531 


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCC---CcEEEEEeCCCcEE
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGN---PHVVWSASEDGTLR  173 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~~l~s~s~Dg~I~  173 (737)
                                 +...+. ...++++.+...+   -.-|++|-.+|.|-
T Consensus        74 -----------lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 -----------LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -----------eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                       223332 2336666665422   23677888888774

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.0038  Score=66.69  Aligned_cols=94  Identities=17%  Similarity=0.237  Sum_probs=75.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceE-EEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF-CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      ..|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++ ..+...++ +++|.|+  |++|+.|-.||+|++.|+..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCC--CCEEEEEecCCeEEEEEccCCCc
Confidence            467789999999999999999999999988 7788888 56777777 9999999  89999999999999999987543


Q ss_pred             CCCCCCCCCCceeeccCCCceeEEEEec
Q 004685          130 RGLDDNAITPSALYQCHTRRVKKLAVEV  157 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p  157 (737)
                      ..         .........|.++.|.+
T Consensus        97 l~---------~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LV---------SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ee---------ccccccccchheeeccc
Confidence            21         11223455677788864

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.87  E-value=0.12  Score=49.59  Aligned_cols=61  Identities=10%  Similarity=0.143  Sum_probs=47.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEE-EEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVVSGAGDAEVRLFNLSR  126 (737)
Q Consensus        62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v-~~sp~~~~~~l~sgs~dg~I~iwd~~~  126 (737)
                      |++++.|...|.+.+.+..+|.....+..  .+.|.+- ...++  +.++..|+.|+..+..|.++
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~--~~~vk~~a~~d~~--~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI--LETVKVRAQCDFD--GGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeee--hhhhccceEEcCC--CceEEEecCCCcEEEecccc
Confidence            56789999999999999999988877732  2333332 24455  68999999999999988875

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.83  E-value=0.33  Score=47.78  Aligned_cols=183  Identities=14%  Similarity=0.145  Sum_probs=114.2

Q ss_pred             eecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        45 ~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      .+.|-+..|.++.|+|+.+.|++......-.||=...|+.+.++.-..-.....++|.-+  +.++++--.+..+.++.+
T Consensus        80 pi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          80 PILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDERDRALYLFTV  157 (316)
T ss_pred             ccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC--CEEEEEehhcceEEEEEE
Confidence            355656679999999999999888888888888778899888874333344556778776  567777777899999888


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC--CCCCCCCccceEEEeccC
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP--PAGSSHQECRNILLDLRC  202 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~--~~~~~~~~~~~~~~~~~~  202 (737)
                      ........-....-++..........-.++|+|.+ +.|+.+-.-.-+.+|.+......-  .....+......      
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~------  230 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL------  230 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccce------
Confidence            75432211011011122222224556789999966 445455566677777776443110  000000000000      


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~  247 (737)
                                 .-..+.++.|++..+.+++-+..++.+.-.|...
T Consensus       231 -----------f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         231 -----------FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             -----------EeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence                       0134667888887777888888888888887763

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.73  E-value=0.08  Score=56.27  Aligned_cols=225  Identities=14%  Similarity=0.139  Sum_probs=116.9

Q ss_pred             ccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-c------cCccceEEEEEee---CCC
Q 004685           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-T------GHSANVFCTKFVP---ETS  106 (737)
Q Consensus        37 ~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~------~h~~~V~~v~~sp---~~~  106 (737)
                      -+.+.+..-++...++|++++.| |=-++|.|..+|.+.|.|++....+..-. .      .....|+++.|.-   ..+
T Consensus        73 ~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D  151 (395)
T PF08596_consen   73 KEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGD  151 (395)
T ss_dssp             SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTS
T ss_pred             ccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCC
Confidence            44567777788789999999997 66799999999999999998777665521 1      1345688898883   211


Q ss_pred             C---CEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEE-EecCC--------------------CcE
Q 004685          107 D---ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA-VEVGN--------------------PHV  162 (737)
Q Consensus       107 ~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~p~~--------------------~~~  162 (737)
                      +   -++++|...|.+.+|.+.-.....   ...+.......+.++|..|. ++.+.                    ..+
T Consensus       152 ~ySSi~L~vGTn~G~v~~fkIlp~~~g~---f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~  228 (395)
T PF08596_consen  152 GYSSICLLVGTNSGNVLTFKILPSSNGR---FSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY  228 (395)
T ss_dssp             SSEEEEEEEEETTSEEEEEEEEE-GGG----EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred             cccceEEEEEeCCCCEEEEEEecCCCCc---eEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence            2   368889999999999886211111   00111222224556665554 22110                    124


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEe----cCCCcEEEEEeCCC
Q 004685          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHLLLVGGSDA  238 (737)
Q Consensus       163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s----p~~~~~l~t~s~Dg  238 (737)
                      ++.++ +..++++..-+.+..           ...+              ........+.+-    ...+..|++-..+|
T Consensus       229 vVvvS-e~~irv~~~~~~k~~-----------~K~~--------------~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G  282 (395)
T PF08596_consen  229 VVVVS-ESDIRVFKPPKSKGA-----------HKSF--------------DDPFLCSSASVVPTISRNGGYCLVCLFNNG  282 (395)
T ss_dssp             EEEE--SSEEEEE-TT---EE-----------EEE---------------SS-EEEEEEEEEEEE-EEEEEEEEEEETTS
T ss_pred             EEEEc-ccceEEEeCCCCccc-----------ceee--------------ccccccceEEEEeecccCCceEEEEEECCC
Confidence            43443 567888887765421           0000              111223333442    11246788888999


Q ss_pred             cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      .|++|.+...+.+........                 -....+...+++++|+.++..+.. .+.++.+-
T Consensus       283 ~i~i~SLP~Lkei~~~~l~~~-----------------~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv~  335 (395)
T PF08596_consen  283 SIRIYSLPSLKEIKSVSLPPP-----------------LDSRRLSSSSISRNGDIFYWTGPS-EIQLFSVW  335 (395)
T ss_dssp             EEEEEETTT--EEEEEE-SS--------------------HHHHTT-EE-TTS-EEEE-SSS-EEEEEEEE
T ss_pred             cEEEEECCCchHhhcccCCCc-----------------cccccccccEECCCCCEEEEeCcc-cEEEEEEE
Confidence            999999998877655432100                 001124557789999977666554 44444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.67  E-value=0.67  Score=49.92  Aligned_cols=65  Identities=26%  Similarity=0.348  Sum_probs=45.6

Q ss_pred             EEEcCCCCEEEEEeCC----------C-cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           56 ISWNSKGSLLISGSDD----------T-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        56 l~~s~~g~~lasgs~d----------g-~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      ++.+|.|..+|....+          . .|.||+.. |+.+.++.- ..+.|.++.|+.+   ..|+....||.+++||+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w-~~~~iv~~~wt~~---e~LvvV~~dG~v~vy~~  108 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPW-DSGRIVGMGWTDD---EELVVVQSDGTVRVYDL  108 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEE-CCCCEEEEEECCC---CeEEEEEcCCEEEEEeC
Confidence            4455655555555333          2 48999965 455666632 3389999999886   56777789999999998


Q ss_pred             C
Q 004685          125 S  125 (737)
Q Consensus       125 ~  125 (737)
                      .
T Consensus       109 ~  109 (410)
T PF04841_consen  109 F  109 (410)
T ss_pred             C
Confidence            6

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.51  E-value=0.22  Score=49.20  Aligned_cols=191  Identities=17%  Similarity=0.148  Sum_probs=104.0

Q ss_pred             CCcEEEEECCCCeEEEEEcccC-ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004685           71 DTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (737)
Q Consensus        71 dg~V~vwd~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (737)
                      +|+|..||..+|+.+....... .....+..+. .  +..+++++.++.|..||..++..          +..... ...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~--~~~v~~~~~~~~l~~~d~~tG~~----------~W~~~~-~~~   67 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-D--GGRVYVASGDGNLYALDAKTGKV----------LWRFDL-PGP   67 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-E--TTEEEEEETTSEEEEEETTTSEE----------EEEEEC-SSC
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-e--CCEEEEEcCCCEEEEEECCCCCE----------EEEeec-ccc
Confidence            6899999999999988873211 1222222232 3  46777778999999999976432          222221 121


Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec-cCCceeeccCCCCCccceEEEEEecCCC
Q 004685          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL-RCGAKRSLADPPKQTLSLKSCDISSTRP  228 (737)
Q Consensus       150 v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~sp~~~  228 (737)
                      +....... + ..++.++.++.+..+|..+++.              +|.. ...      .............+.   +
T Consensus        68 ~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~~--------------~W~~~~~~------~~~~~~~~~~~~~~~---~  122 (238)
T PF13360_consen   68 ISGAPVVD-G-GRVYVGTSDGSLYALDAKTGKV--------------LWSIYLTS------SPPAGVRSSSSPAVD---G  122 (238)
T ss_dssp             GGSGEEEE-T-TEEEEEETTSEEEEEETTTSCE--------------EEEEEE-S------SCTCSTB--SEEEEE---T
T ss_pred             ccceeeec-c-cccccccceeeeEecccCCcce--------------eeeecccc------ccccccccccCceEe---c
Confidence            11111111 3 4455666888999999988873              2321 110      000001111222333   3


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 004685          229 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (737)
Q Consensus       229 ~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~  308 (737)
                      ..++++..++.|..+|+++++.+........+...  .     .    .....+..-....++ .++++..++.+..+|+
T Consensus       123 ~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~--~-----~----~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~  190 (238)
T PF13360_consen  123 DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS--P-----I----SSFSDINGSPVISDG-RVYVSSGDGRVVAVDL  190 (238)
T ss_dssp             TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS---------E----EEETTEEEEEECCTT-EEEEECCTSSEEEEET
T ss_pred             CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc--c-----e----eeecccccceEEECC-EEEEEcCCCeEEEEEC
Confidence            57888888999999999999876555332111000  0     0    000012222222344 7888888886444499


Q ss_pred             CCCC
Q 004685          309 NHAG  312 (737)
Q Consensus       309 ~~~~  312 (737)
                      .+++
T Consensus       191 ~tg~  194 (238)
T PF13360_consen  191 ATGE  194 (238)
T ss_dssp             TTTE
T ss_pred             CCCC
Confidence            8865

...

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.47  E-value=0.016  Score=63.90  Aligned_cols=110  Identities=10%  Similarity=0.177  Sum_probs=81.7

Q ss_pred             EEEEEcCCCCEEEEEeC----CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           54 NAISWNSKGSLLISGSD----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        54 ~~l~~s~~g~~lasgs~----dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      +-.+|+|...++|.++-    -|.|.||- ++|++....  ...-.+++++|+|.  .-.|+.|=.-|.+.+|.......
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChH--HHHHhhccccceeEEEecCCcee
Confidence            34679999999988763    57888885 556543322  22344678999998  56777887789999998875321


Q ss_pred             CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~  179 (737)
                                -.....|..+|..+.|++ ++..++++..-|.|.+|....
T Consensus        94 ----------htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   94 ----------HTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ----------eeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence                      223456999999999999 568888999999999998764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.43  E-value=0.47  Score=49.32  Aligned_cols=166  Identities=16%  Similarity=0.227  Sum_probs=76.9

Q ss_pred             EEcCCCCEE-EEEeCCC--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCC
Q 004685           57 SWNSKGSLL-ISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  133 (737)
Q Consensus        57 ~~s~~g~~l-asgs~dg--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~  133 (737)
                      +|.++|+.| +.+..||  .+.+.|+.+++..+-- .+.........++|+  .+.++-...+..|+-.|+.+.+.    
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~~--~~~~~Yv~~~~~l~~vdL~T~e~----  114 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSPD--DRALYYVKNGRSLRRVDLDTLEE----  114 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TT--SSEEEEEETTTEEEEEETTT--E----
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEecC--CCeEEEEECCCeEEEEECCcCcE----
Confidence            467788655 4554454  4666688888765543 222233335667787  46666665667888888886432    


Q ss_pred             CCCCCCceeeccCCCceeEEEEec-CCCcEEEEEeCCCcEEEEEcCCC-CCC------CCCCCCCCccceEEEeccCCce
Q 004685          134 DNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQG-SSC------PPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       134 ~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~Dg~I~vwdl~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                            ...+......+-...|.. .+...+ .+..     +  .+.. ...      .........|..+-+++..+..
T Consensus       115 ------~~vy~~p~~~~g~gt~v~n~d~t~~-~g~e-----~--~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~  180 (386)
T PF14583_consen  115 ------RVVYEVPDDWKGYGTWVANSDCTKL-VGIE-----I--SREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER  180 (386)
T ss_dssp             ------EEEEE--TTEEEEEEEEE-TTSSEE-EEEE-----E--EGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred             ------EEEEECCcccccccceeeCCCccEE-EEEE-----E--eehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence                  122222344444455542 233333 2211     0  0110 000      0111223456666677777766


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeC---CC-cEEEEECC
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGS---DA-FARLYDRR  246 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~---Dg-~i~iwd~~  246 (737)
                      ..+...   ...+.-+.|+|.++.+|+-|-.   +. .-|||-++
T Consensus       181 ~~v~~~---~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~  222 (386)
T PF14583_consen  181 KVVFED---TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN  222 (386)
T ss_dssp             EEEEEE---SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred             eEEEec---CccccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence            555442   3467789999998888777653   22 13566554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.40  E-value=0.55  Score=54.72  Aligned_cols=212  Identities=8%  Similarity=0.094  Sum_probs=119.8

Q ss_pred             ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcE
Q 004685           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  172 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I  172 (737)
                      ...|.++.|.-+  +..++.+..+|.|.+-|..+..           +.....-...|.+++|+| +...++..+.++++
T Consensus        68 d~~i~s~~fl~d--~~~i~v~~~~G~iilvd~et~~-----------~eivg~vd~GI~aaswS~-Dee~l~liT~~~tl  133 (1265)
T KOG1920|consen   68 DDEIVSVQFLAD--TNSICVITALGDIILVDPETLE-----------LEIVGNVDNGISAASWSP-DEELLALITGRQTL  133 (1265)
T ss_pred             CcceEEEEEecc--cceEEEEecCCcEEEEcccccc-----------eeeeeeccCceEEEeecC-CCcEEEEEeCCcEE
Confidence            368999999998  6888888999999999877532           344444577899999999 66777777776766


Q ss_pred             EEEEcCCCCCCCCCCC-CCC----ccceEEEe-----cc--CCce---eeccCCC-----CCccceEEEEEecCCCcEEE
Q 004685          173 RQHDFRQGSSCPPAGS-SHQ----ECRNILLD-----LR--CGAK---RSLADPP-----KQTLSLKSCDISSTRPHLLL  232 (737)
Q Consensus       173 ~vwdl~~~~~~~~~~~-~~~----~~~~~~~~-----~~--~~~~---~~~~~~~-----~~~~~v~~i~~sp~~~~~l~  232 (737)
                      .+-+- ...++..... ...    ....+-|.     ++  .|+.   ..+....     .....-+.++|-.+ ++++|
T Consensus       134 l~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fA  211 (1265)
T KOG1920|consen  134 LFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFA  211 (1265)
T ss_pred             EEEec-cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEE
Confidence            65432 1221110000 000    00000010     00  0000   0000000     01122345888886 67888


Q ss_pred             EE-----eCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC---CCeEE
Q 004685          233 VG-----GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVY  304 (737)
Q Consensus       233 t~-----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~---dg~v~  304 (737)
                      +.     ..-..|++||.+ +..-..-.                     ...+.=.+++|-|.|..+++-..   |+.|.
T Consensus       212 Vs~~~~~~~~RkirV~drE-g~Lns~se---------------------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Iv  269 (1265)
T KOG1920|consen  212 VSFVESETGTRKIRVYDRE-GALNSTSE---------------------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIV  269 (1265)
T ss_pred             EEEEeccCCceeEEEeccc-chhhcccC---------------------cccccccceeecCCCCeEeeeeecCCCCcEE
Confidence            83     233799999987 33211100                     00112456899999998888754   56799


Q ss_pred             EEEcCCCCcc--eeeeecC-CCCeeeeeccCCCCccCCCCC
Q 004685          305 LMDVNHAGGR--AMRYTVG-DASKIMSFTPTLNGLELQPPI  342 (737)
Q Consensus       305 iwd~~~~~~~--~~~~~~~-~~~~~~~~~p~~~~~~~~~~~  342 (737)
                      +|.-+-...-  ....... ..+..++|+-+...++.....
T Consensus       270 ffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~  310 (1265)
T KOG1920|consen  270 FFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN  310 (1265)
T ss_pred             EEecCCccccccccCCcccccchheeeecCCCCceeeeecc
Confidence            9985542211  0111122 237889999988888775543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.36  E-value=0.67  Score=47.30  Aligned_cols=253  Identities=10%  Similarity=0.101  Sum_probs=133.7

Q ss_pred             cccccccccccccccccceeecc-cCC----ceEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEEcccCccceEE
Q 004685           26 VNHSLQMHSSLVRRLSQERELEG-HQG----CVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFC   98 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~-H~~----~V~~l~~s~~g~~lasg--s~dg~V~vwd~~~~~~~~~~~~~h~~~V~~   98 (737)
                      -.--|.+||...-..+-...|.+ |..    ....++++.|+++++..  +---.|.|-|+..++.+..+.   ...+..
T Consensus        65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~---~PGC~~  141 (342)
T PF06433_consen   65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID---TPGCWL  141 (342)
T ss_dssp             EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE---GTSEEE
T ss_pred             ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec---CCCEEE
Confidence            34567788843333333334443 122    22346888999987765  445679999999999888773   222223


Q ss_pred             EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCcee-EEEEecCCCcEEEEEeCCCcEEEEEc
Q 004685           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDF  177 (737)
Q Consensus        99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~s~s~Dg~I~vwdl  177 (737)
                      +  -|.. ..-|.+-|.||.+.-..+........     .....+....+++. .-++...++.++ --+.+|.|+-.|+
T Consensus       142 i--yP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~-----~~t~~F~~~~dp~f~~~~~~~~~~~~~-F~Sy~G~v~~~dl  212 (342)
T PF06433_consen  142 I--YPSG-NRGFSMLCGDGSLLTVTLDADGKEAQ-----KSTKVFDPDDDPLFEHPAYSRDGGRLY-FVSYEGNVYSADL  212 (342)
T ss_dssp             E--EEEE-TTEEEEEETTSCEEEEEETSTSSEEE-----EEEEESSTTTS-B-S--EEETTTTEEE-EEBTTSEEEEEEE
T ss_pred             E--EecC-CCceEEEecCCceEEEEECCCCCEeE-----eeccccCCCCcccccccceECCCCeEE-EEecCCEEEEEec
Confidence            2  3433 35688999999999998885221110     00112222223322 223443233344 4688899999998


Q ss_pred             CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC--C-------CcEEEEECCCC
Q 004685          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--D-------AFARLYDRRML  248 (737)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~--D-------g~i~iwd~~~~  248 (737)
                      ......         . ..-|.+.......-..   ..+...-+++++..+.+++....  +       ..|.+||+.+.
T Consensus       213 sg~~~~---------~-~~~~~~~t~~e~~~~W---rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~  279 (342)
T PF06433_consen  213 SGDSAK---------F-GKPWSLLTDAEKADGW---RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH  279 (342)
T ss_dssp             TTSSEE---------E-EEEEESS-HHHHHTTE---EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT
T ss_pred             cCCccc---------c-cCcccccCccccccCc---CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC
Confidence            876521         0 0011111100000000   12233456777754444433211  1       23788899888


Q ss_pred             CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEe-CCCeEEEEEcCCCCcceeeeecCCCCe
Q 004685          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASK  325 (737)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~  325 (737)
                      +.+..+..                      ..++.+|.++.+.+ +|++.+ .++.+.+||..+++........+....
T Consensus       280 krv~Ri~l----------------------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~  336 (342)
T PF06433_consen  280 KRVARIPL----------------------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPT  336 (342)
T ss_dssp             EEEEEEEE----------------------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS--
T ss_pred             eEEEEEeC----------------------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCce
Confidence            87666531                      11478999998765 666555 479999999999887766665555443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.34  E-value=0.17  Score=53.54  Aligned_cols=183  Identities=15%  Similarity=0.166  Sum_probs=97.3

Q ss_pred             cCCCCEEEEE---------eCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           59 NSKGSLLISG---------SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        59 s~~g~~lasg---------s~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      |||+++++..         +..+.+.|||+.+++..... . ....+....|+|+  |+.++... ++.|.+++......
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~-~-~~~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT-P-PPPKLQDAKWSPD--GKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-SS--STEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc-C-CccccccceeecC--CCeeEEEe-cCceEEEECCCCCe
Confidence            5788777663         22467899999997655433 2 2678899999999  78887775 67899998765322


Q ss_pred             CCCCCCCCCCceeeccC---------CCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC------------CCCCC
Q 004685          130 RGLDDNAITPSALYQCH---------TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC------------PPAGS  188 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h---------~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~------------~~~~~  188 (737)
                      ......-  .-..+.+-         -+.-..+-|+|++..+++.--.+..|+.+.+-.....            +..+.
T Consensus        76 ~~lT~dg--~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~  153 (353)
T PF00930_consen   76 TQLTTDG--EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD  153 (353)
T ss_dssp             EESES----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred             EEecccc--ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence            1110000  00001111         1223568899966555555556666666554322111            22223


Q ss_pred             CCCccceEEEeccCCceeeccCC---CCCccceEEEEEecCCCcEEEEE--eCC---CcEEEEECCCCC
Q 004685          189 SHQECRNILLDLRCGAKRSLADP---PKQTLSLKSCDISSTRPHLLLVG--GSD---AFARLYDRRMLP  249 (737)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~t~--s~D---g~i~iwd~~~~~  249 (737)
                      ........++++..+....+...   ......+..+.|.+++ ..|+..  +.+   -.+.++|..++.
T Consensus       154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~-~~l~~~~~nR~q~~~~l~~~d~~tg~  221 (353)
T PF00930_consen  154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG-KRLWVQWLNRDQNRLDLVLCDASTGE  221 (353)
T ss_dssp             ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT-EEEEEEEEETTSTEEEEEEEEECTTT
T ss_pred             cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC-cEEEEEEcccCCCEEEEEEEECCCCc
Confidence            33445555677766665433333   2346678899999974 533333  222   235566666543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.19  E-value=0.47  Score=46.85  Aligned_cols=205  Identities=16%  Similarity=0.136  Sum_probs=97.8

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeecc-CCCceeEEEEecCCCcEEEEEeC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASE  168 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~  168 (737)
                      .+-...+..++|+|+. +.++++....+.|...+..   +.        .+..+.- -.+..-.|++.. ++.++++.-.
T Consensus        18 ~g~~~e~SGLTy~pd~-~tLfaV~d~~~~i~els~~---G~--------vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er   84 (248)
T PF06977_consen   18 PGILDELSGLTYNPDT-GTLFAVQDEPGEIYELSLD---GK--------VLRRIPLDGFGDYEGITYLG-NGRYVLSEER   84 (248)
T ss_dssp             TT--S-EEEEEEETTT-TEEEEEETTTTEEEEEETT-------------EEEEEE-SS-SSEEEEEE-S-TTEEEEEETT
T ss_pred             CCccCCccccEEcCCC-CeEEEEECCCCEEEEEcCC---CC--------EEEEEeCCCCCCceeEEEEC-CCEEEEEEcC
Confidence            4455669999999985 5677777778888777764   21        1333221 134567888875 5566666556


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004685          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (737)
Q Consensus       169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~  248 (737)
                      ++.+.++++.......       . ...+.      ...+.....+...+-.++|+|.. +.|+++-...-.++|.++..
T Consensus        85 ~~~L~~~~~~~~~~~~-------~-~~~~~------~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~  149 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSL-------D-RADVQ------KISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGF  149 (248)
T ss_dssp             TTEEEEEEE----TT----------EEEEE------EEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEEST
T ss_pred             CCcEEEEEEecccccc-------c-hhhce------EEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccc
Confidence            8999999985543110       0 00000      00111222344568899999975 45555566666677766541


Q ss_pred             CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCcceeeeecC------
Q 004685          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG------  321 (737)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~------  321 (737)
                      ..-          ....................+..++++|. |.+++.+.....|..+| .+++.........      
T Consensus       150 ~~~----------~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~  218 (248)
T PF06977_consen  150 PGG----------FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLS  218 (248)
T ss_dssp             T-S----------S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-S
T ss_pred             cCc----------cceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcc
Confidence            100          00000000000000011113788999995 55566666688999999 4445333333222      


Q ss_pred             ---CCCeeeeeccCC
Q 004685          322 ---DASKIMSFTPTL  333 (737)
Q Consensus       322 ---~~~~~~~~~p~~  333 (737)
                         .....++|.|++
T Consensus       219 ~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  219 KDIPQPEGIAFDPDG  233 (248)
T ss_dssp             S---SEEEEEE-TT-
T ss_pred             cccCCccEEEECCCC
Confidence               245556776654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.16  E-value=0.32  Score=55.71  Aligned_cols=212  Identities=16%  Similarity=0.166  Sum_probs=116.5

Q ss_pred             CEEEE-EeCCCcEEEEECCCCeEEEEEcccCc-cceEEEEEee----CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCC
Q 004685           63 SLLIS-GSDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVP----ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA  136 (737)
Q Consensus        63 ~~las-gs~dg~V~vwd~~~~~~~~~~~~~h~-~~V~~v~~sp----~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~  136 (737)
                      .+|+. ......|.-.|++.|+.+.... .|. .+|..++-..    -. ....+.|-.+..|..||.+........   
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~-~~~~~~v~~~~p~~K~aqlt-~e~tflGls~n~lfriDpR~~~~k~v~---  568 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWK-VHDDIPVVDIAPDSKFAQLT-NEQTFLGLSDNSLFRIDPRLSGNKLVD---  568 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEee-cCCCcceeEecccccccccC-CCceEEEECCCceEEeccCCCCCceee---
Confidence            34443 3456788999999999999984 444 4465553221    11 234566777889999999964321100   


Q ss_pred             CCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCcc
Q 004685          137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (737)
Q Consensus       137 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (737)
                       .....+ ......+|++-..  ..+||.|+.+|.|++||- .+.                        ..-..+++-..
T Consensus       569 -~~~k~Y-~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~-~g~------------------------~AKT~lp~lG~  619 (794)
T PF08553_consen  569 -SQSKQY-SSKNNFSCFATTE--DGYIAVGSNKGDIRLYDR-LGK------------------------RAKTALPGLGD  619 (794)
T ss_pred             -cccccc-ccCCCceEEEecC--CceEEEEeCCCcEEeecc-cch------------------------hhhhcCCCCCC
Confidence             000111 2234456776654  357889999999999992 221                        11222344567


Q ss_pred             ceEEEEEecCCCcEEEEEeCCCcEEEEECC--CCCCc------ccccCCCCCCCCccccccccccCC---CCcccceeEE
Q 004685          217 SLKSCDISSTRPHLLLVGGSDAFARLYDRR--MLPPL------TSCQKRMSPPPCVNYFCPMHLSEH---GRSSLHLTHV  285 (737)
Q Consensus       217 ~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~v  285 (737)
                      +|.++..+.+ |+++++.+ +..|.+++..  .++..      ..+.....|.+-.....|.|...-   +......+..
T Consensus       620 pI~~iDvt~D-GkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a  697 (794)
T PF08553_consen  620 PIIGIDVTAD-GKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPA  697 (794)
T ss_pred             CeeEEEecCC-CcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeece
Confidence            8999999997 46655544 5678888863  22111      111111112222222333332211   1111124455


Q ss_pred             EEcC---CCCEEEEEeCCCeEEEEEcCC
Q 004685          286 TFSP---NGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       286 ~~sp---~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .|+-   .....++++....+.+||++.
T Consensus       698 ~Fnt~~~~~E~~IvtstG~f~v~Wnf~k  725 (794)
T PF08553_consen  698 KFNTGIGKQETSIVTSTGPFVVTWNFKK  725 (794)
T ss_pred             EEecCCCCccceEEEeccCEEEEEEHHH
Confidence            5652   123455555666999999987

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.023  Score=60.88  Aligned_cols=77  Identities=18%  Similarity=0.257  Sum_probs=64.9

Q ss_pred             ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCcee-EEEEecCCCcEEEEEeCCCc
Q 004685           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGT  171 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~s~s~Dg~  171 (737)
                      ...|.-+.|+|.  -+++|.+..+|.|.+..++-           +.+.++.-+...++ +++|.| ++++|+.|-.||+
T Consensus        20 ~~~i~~~ewnP~--~dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~   85 (665)
T KOG4640|consen   20 PINIKRIEWNPK--MDLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGT   85 (665)
T ss_pred             ccceEEEEEcCc--cchhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecC-CCCEEEEEecCCe
Confidence            345778999999  69999999999999998873           33667766777777 999999 5799999999999


Q ss_pred             EEEEEcCCCCCC
Q 004685          172 LRQHDFRQGSSC  183 (737)
Q Consensus       172 I~vwdl~~~~~~  183 (737)
                      |++.|+.++..+
T Consensus        86 I~L~Dve~~~~l   97 (665)
T KOG4640|consen   86 IRLHDVEKGGRL   97 (665)
T ss_pred             EEEEEccCCCce
Confidence            999999998743

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.08  E-value=0.045  Score=59.58  Aligned_cols=112  Identities=16%  Similarity=0.153  Sum_probs=79.9

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC
Q 004685          159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (737)
Q Consensus       159 ~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg  238 (737)
                      ...+++.|+.-|.+.+|+-..++..                        ..........+..+..++. ..++|.|+..|
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~~~~~------------------------~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g   98 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHTGEMR------------------------KLKNEGATGITCVRSVSSV-EYLVAAGTASG   98 (726)
T ss_pred             CCceEEEecccceEEEEecCchhhh------------------------cccccCccceEEEEEecch-hHhhhhhcCCc
Confidence            5689999999999999997766532                        1111113445667778886 47999999999


Q ss_pred             cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .|.++-++...+-           ....+.+.+.    .++..|++++|++++..+++|...|+|..-.+.+
T Consensus        99 ~V~v~ql~~~~p~-----------~~~~~t~~d~----~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   99 RVSVFQLNKELPR-----------DLDYVTPCDK----SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eEEeehhhccCCC-----------cceeeccccc----cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            9999988764321           1111211111    1244699999999999999999999999988887

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=1.9  Score=46.13  Aligned_cols=206  Identities=16%  Similarity=0.159  Sum_probs=127.8

Q ss_pred             eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE--CCCcEEEEecCCCCC
Q 004685           53 VNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GDAEVRLFNLSRFSG  129 (737)
Q Consensus        53 V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs--~dg~I~iwd~~~~~~  129 (737)
                      -..+++++.+. ..++...++.|.+.|..+.+.......+.  ....++++|+. +...++-.  .++++.+.|......
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~-~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDG-KYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCC-CEEEEEecccCCceEEEEeCCCCeE
Confidence            34678888777 55556667899999988877777764333  67789999994 33444444  367888887765321


Q ss_pred             CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (737)
                                ......-..+ ..++++|++...+++-..++.|.+.|........  ..                   ..
T Consensus       153 ----------~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~-------------------~~  200 (381)
T COG3391         153 ----------TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GS-------------------VG  200 (381)
T ss_pred             ----------EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cc-------------------cc
Confidence                      2332222233 8899999665566666688999999966554220  00                   00


Q ss_pred             CCCCCccceEEEEEecCCCcEEEEEeCC--CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          210 DPPKQTLSLKSCDISSTRPHLLLVGGSD--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                      ..-........+.++|++....++...+  +.+...|..++.....-.                   ..... ....+.+
T Consensus       201 ~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~-------------------~~~~~-~~~~v~~  260 (381)
T COG3391         201 SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL-------------------PVGSG-APRGVAV  260 (381)
T ss_pred             cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc-------------------ccccC-CCCceeE
Confidence            0001122335678888754444544444  588888888765332200                   00011 1345789


Q ss_pred             cCCCCEEEEEeC-CCeEEEEEcCCCCc
Q 004685          288 SPNGEEVLLSYS-GEHVYLMDVNHAGG  313 (737)
Q Consensus       288 sp~g~~l~~g~~-dg~v~iwd~~~~~~  313 (737)
                      +|+|.++.+... .+.+.+-|..+...
T Consensus       261 ~p~g~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         261 DPAGKAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             CCCCCEEEEEecCCCeEEEEeCCCCce
Confidence            999999999866 48999999888543

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.01  E-value=0.25  Score=54.54  Aligned_cols=165  Identities=8%  Similarity=-0.005  Sum_probs=91.9

Q ss_pred             EcCCCCEEE-EEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---------------------
Q 004685           58 WNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------------------  115 (737)
Q Consensus        58 ~s~~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---------------------  115 (737)
                      ++|||+.+. +.-..+.+.+.|.++.+...++.-  ......++++|+  +.++++.+.                     
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spd--Gk~afvTsyNsE~G~tl~em~a~e~d~~vv  275 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYD--GKYAFSTCYNSEEGVTLAEMMAAERDWVVV  275 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCC--CCEEEEeccCcccCcceeeeccccCceEEE
Confidence            344565442 233346677888888777766632  224456777777  566555541                     


Q ss_pred             -------------------CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685          116 -------------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (737)
Q Consensus       116 -------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd  176 (737)
                                         ++.|.+.|.+......     ...+..+ .-......+.++|++..+++++..+.+|.+.|
T Consensus       276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~-----~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVID  349 (635)
T PRK02888        276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAG-----SALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVID  349 (635)
T ss_pred             EchHHHHHhhhCCCEEEECCCEEEEEECCccccCC-----cceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence                               1234444433200000     0112222 23456678999997666666777799999999


Q ss_pred             cCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~  247 (737)
                      +.+.+.......   +....+          +..... .......+|.++ ++.+.+-.-|..|-.||+..
T Consensus       350 v~k~k~~~~~~~---~~~~~v----------vaevev-GlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        350 VRKLDDLFDGKI---KPRDAV----------VAEPEL-GLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ChhhhhhhhccC---CccceE----------EEeecc-CCCcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence            988653210000   000000          111111 223345688886 57888889999999999875

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.01  E-value=0.35  Score=40.56  Aligned_cols=103  Identities=20%  Similarity=0.151  Sum_probs=65.7

Q ss_pred             eEEEEEeeCCC--CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEE
Q 004685           96 VFCTKFVPETS--DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (737)
Q Consensus        96 V~~v~~sp~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~  173 (737)
                      |+++++..-..  .+.|+.|+.|..|++|+-..            .+..+. -.+.|+++.-..  ...|+.+..+|+|-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVG   66 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------IVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVG   66 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------EEEEEe-cccceEEEEEcC--CCEEEEEecCCEEE
Confidence            56666665221  36899999999999998663            234443 456677777665  36788899999999


Q ss_pred             EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec---CCCcEEEEEeCCCcEE
Q 004685          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS---TRPHLLLVGGSDAFAR  241 (737)
Q Consensus       174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp---~~~~~l~t~s~Dg~i~  241 (737)
                      +|+-...                +|-.+.            +..+.++++..   ++...|++|-.+|.|-
T Consensus        67 vY~~~~R----------------lWRiKS------------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   67 VYDRSQR----------------LWRIKS------------KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEeCcce----------------eeeecc------------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            9975322                222111            12345555443   3334789998888774

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.01  E-value=0.021  Score=39.76  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=29.8

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL   84 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~   84 (737)
                      ...|.+++|+|...+||.|..+|.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356999999999999999999999999998 4443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.94  E-value=0.32  Score=52.35  Aligned_cols=182  Identities=14%  Similarity=0.127  Sum_probs=100.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEcccCcc------ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCC
Q 004685           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSA------NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA  136 (737)
Q Consensus        63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~------~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~  136 (737)
                      ..++.++.+|.+..+|..+|+.+.........      ....+.-+|--.+..++.++.+|.+..+|..+++..      
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~------  279 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV------  279 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE------
Confidence            34666777888998999888876654211100      011111122101356777778999999998864321      


Q ss_pred             CCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCcc
Q 004685          137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (737)
Q Consensus       137 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (737)
                          ....  ......+..   .+..++.++.+|.+..+|..+++.              +|.....         . ..
T Consensus       280 ----W~~~--~~~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~--------------~W~~~~~---------~-~~  326 (394)
T PRK11138        280 ----WKRE--YGSVNDFAV---DGGRIYLVDQNDRVYALDTRGGVE--------------LWSQSDL---------L-HR  326 (394)
T ss_pred             ----Eeec--CCCccCcEE---ECCEEEEEcCCCeEEEEECCCCcE--------------EEccccc---------C-CC
Confidence                1111  111112222   234566778899999999988762              2211100         0 00


Q ss_pred             ceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEE
Q 004685          217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (737)
Q Consensus       217 ~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~  296 (737)
                      ...+....   +..+++++.||.|.++|..+++.+......                   ... ......+  .+..|++
T Consensus       327 ~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~-------------------~~~-~~s~P~~--~~~~l~v  381 (394)
T PRK11138        327 LLTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKVD-------------------SSG-FLSEPVV--ADDKLLI  381 (394)
T ss_pred             cccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEcC-------------------CCc-ceeCCEE--ECCEEEE
Confidence            01111122   247888999999999999988755433110                   000 0111112  3457999


Q ss_pred             EeCCCeEEEEEc
Q 004685          297 SYSGEHVYLMDV  308 (737)
Q Consensus       297 g~~dg~v~iwd~  308 (737)
                      ++.||.|+.++.
T Consensus       382 ~t~~G~l~~~~~  393 (394)
T PRK11138        382 QARDGTVYAITR  393 (394)
T ss_pred             EeCCceEEEEeC
Confidence            999999998864

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.91  E-value=0.48  Score=51.02  Aligned_cols=123  Identities=12%  Similarity=0.138  Sum_probs=71.4

Q ss_pred             eeecccCCceEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           44 RELEGHQGCVNAISWNSKGSLLISGS---DD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~~lasgs---~d-g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      ..+..-...+..=+|+|++..++--.   .. ..+.++|+.+++......  ....-..-+|+|++ ..++++...||..
T Consensus       186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG-~~l~f~~~rdg~~  262 (425)
T COG0823         186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDG-SKLAFSSSRDGSP  262 (425)
T ss_pred             eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCC-CEEEEEECCCCCc
Confidence            33443445677778999988765432   22 469999999887554441  23334456799994 4445566667776


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~  178 (737)
                      .||-+......         ...+..-.+.-+.=.|+|++..+.++.+..|.-.+|-..
T Consensus       263 ~iy~~dl~~~~---------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~  312 (425)
T COG0823         263 DIYLMDLDGKN---------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYD  312 (425)
T ss_pred             cEEEEcCCCCc---------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEEC
Confidence            66544432221         112222222223567899776677777777765555433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.88  E-value=1.3  Score=45.16  Aligned_cols=57  Identities=7%  Similarity=0.118  Sum_probs=43.7

Q ss_pred             EEEEEcCcccEEEEeecCCCceEEEEecCCCC-eEEEE-ecCCcEEEEcCCCCCCccccC
Q 004685          651 WFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATS-GIDNTIKIWTPSASVPSIVSG  708 (737)
Q Consensus       651 i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~-~l~S~-~~Dg~i~lW~~~~~~~~~~~~  708 (737)
                      |-++|+.|++.+.++..- .++.+|+.+.|.+ +|+.. ..|+.|.+||..+++.+..+.
T Consensus       271 VWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  271 VWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            345688899999999852 3688999999875 77655 468999999999999888765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.74  E-value=0.2  Score=54.03  Aligned_cols=143  Identities=19%  Similarity=0.194  Sum_probs=77.6

Q ss_pred             CccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc
Q 004685           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT  171 (737)
Q Consensus        92 h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~  171 (737)
                      .......+.++|+  +.+++. +.||.-.|+....             ...  ...+....+.|.+ . ..+|+-...+.
T Consensus        31 ~~~~p~~ls~npn--gr~v~V-~g~geY~iyt~~~-------------~r~--k~~G~g~~~vw~~-~-n~yAv~~~~~~   90 (443)
T PF04053_consen   31 CEIYPQSLSHNPN--GRFVLV-CGDGEYEIYTALA-------------WRN--KAFGSGLSFVWSS-R-NRYAVLESSST   90 (443)
T ss_dssp             -SS--SEEEE-TT--SSEEEE-EETTEEEEEETTT-------------TEE--EEEEE-SEEEE-T-S-SEEEEE-TTS-
T ss_pred             CCcCCeeEEECCC--CCEEEE-EcCCEEEEEEccC-------------Ccc--cccCceeEEEEec-C-ccEEEEECCCe
Confidence            3455789999999  677777 4578888887432             121  1234456788988 4 34666666888


Q ss_pred             EEEE-EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004685          172 LRQH-DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (737)
Q Consensus       172 I~vw-dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~  250 (737)
                      |.++ ++......                       .+.    ....+..  +.+  |.+|+..+.+ .|.+||..+++.
T Consensus        91 I~I~kn~~~~~~k-----------------------~i~----~~~~~~~--If~--G~LL~~~~~~-~i~~yDw~~~~~  138 (443)
T PF04053_consen   91 IKIYKNFKNEVVK-----------------------SIK----LPFSVEK--IFG--GNLLGVKSSD-FICFYDWETGKL  138 (443)
T ss_dssp             EEEEETTEE-TT--------------------------------SS-EEE--EE---SSSEEEEETT-EEEEE-TTT--E
T ss_pred             EEEEEcCccccce-----------------------EEc----CCcccce--EEc--CcEEEEECCC-CEEEEEhhHcce
Confidence            9996 33222100                       000    0011222  222  4566666554 899999999887


Q ss_pred             cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +..+..                      . +|..|.|+++|.+++..+.+ .++|++...
T Consensus       139 i~~i~v----------------------~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  139 IRRIDV----------------------S-AVKYVIWSDDGELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             EEEESS------------------------E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred             eeEEec----------------------C-CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence            766531                      1 37899999999999999876 777776554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.74  E-value=0.74  Score=47.98  Aligned_cols=184  Identities=15%  Similarity=0.131  Sum_probs=107.9

Q ss_pred             cEEEEECCCCeEEEEEcccCccceEEEEEeeCC-----CCCEEEEEEC----------CCcEEEEecCCC-CCCCCCCCC
Q 004685           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPET-----SDELVVSGAG----------DAEVRLFNLSRF-SGRGLDDNA  136 (737)
Q Consensus        73 ~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~-----~~~~l~sgs~----------dg~I~iwd~~~~-~~~~~~~~~  136 (737)
                      .|++.|..+.+.+..+.......+++++...-.     ...+|+.|..          .|.|.++++... ...    ..
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~----~~   78 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN----FK   78 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------E
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc----eE
Confidence            588999888887777644445566666544311     0367777753          288999999863 100    01


Q ss_pred             CCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCcc
Q 004685          137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (737)
Q Consensus       137 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (737)
                      .+.+.. ....++|++++--  ++.++ .+ ..+.|.+|++...+..                      ........ ..
T Consensus        79 l~~i~~-~~~~g~V~ai~~~--~~~lv-~~-~g~~l~v~~l~~~~~l----------------------~~~~~~~~-~~  130 (321)
T PF03178_consen   79 LKLIHS-TEVKGPVTAICSF--NGRLV-VA-VGNKLYVYDLDNSKTL----------------------LKKAFYDS-PF  130 (321)
T ss_dssp             EEEEEE-EEESS-EEEEEEE--TTEEE-EE-ETTEEEEEEEETTSSE----------------------EEEEEE-B-SS
T ss_pred             EEEEEE-EeecCcceEhhhh--CCEEE-Ee-ecCEEEEEEccCcccc----------------------hhhheecc-eE
Confidence            112222 2357889988876  33444 33 3478999999887611                      01111111 12


Q ss_pred             ceEEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEE
Q 004685          217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL  295 (737)
Q Consensus       217 ~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~  295 (737)
                      .+.++...   ++++++|..-..+.++..+.. ..+..+.                   ......+++++.|-++++.++
T Consensus       131 ~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~l~~va-------------------~d~~~~~v~~~~~l~d~~~~i  188 (321)
T PF03178_consen  131 YITSLSVF---KNYILVGDAMKSVSLLRYDEENNKLILVA-------------------RDYQPRWVTAAEFLVDEDTII  188 (321)
T ss_dssp             SEEEEEEE---TTEEEEEESSSSEEEEEEETTTE-EEEEE-------------------EESS-BEEEEEEEE-SSSEEE
T ss_pred             EEEEEecc---ccEEEEEEcccCEEEEEEEccCCEEEEEE-------------------ecCCCccEEEEEEecCCcEEE
Confidence            45555555   358999988888888855431 1111111                   111122588999987777899


Q ss_pred             EEeCCCeEEEEEcCC
Q 004685          296 LSYSGEHVYLMDVNH  310 (737)
Q Consensus       296 ~g~~dg~v~iwd~~~  310 (737)
                      ++..+|.+.++....
T Consensus       189 ~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  189 VGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEETTSEEEEEEE-S
T ss_pred             EEcCCCeEEEEEECC
Confidence            999999999999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.74  E-value=0.027  Score=39.24  Aligned_cols=31  Identities=16%  Similarity=0.295  Sum_probs=28.6

Q ss_pred             CCceEEEEecCCCCeEEEEecCCcEEEEcCC
Q 004685          669 EAVVNCVQCHPFDCVVATSGIDNTIKIWTPS  699 (737)
Q Consensus       669 ~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~  699 (737)
                      ..+|.+++|+|...+||.+..||.|.|+.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4579999999999999999999999999984

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.74  E-value=1.5  Score=46.81  Aligned_cols=119  Identities=11%  Similarity=0.116  Sum_probs=74.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-------------------------E-----------------Ec
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-------------------------S-----------------IE   89 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~-------------------------~-----------------~~   89 (737)
                      .|+.|.|+++..-|+.|...|.|.||.+...+.-.                         .                 +.
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999988889999999999998764321110                         0                 01


Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCcee---eccCCCceeEEEEec----CCC--
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL---YQCHTRRVKKLAVEV----GNP--  160 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~~p----~~~--  160 (737)
                      ....++|++++.+.-   -+++.|..+|.+.|.|++.+.-...     ..+..   -......++++.|.-    +++  
T Consensus        83 ~~~~g~vtal~~S~i---GFvaigy~~G~l~viD~RGPavI~~-----~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   83 DAKQGPVTALKNSDI---GFVAIGYESGSLVVIDLRGPAVIYN-----ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             ---S-SEEEEEE-BT---SEEEEEETTSEEEEEETTTTEEEEE-----EEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             eccCCcEeEEecCCC---cEEEEEecCCcEEEEECCCCeEEee-----ccccccccccccccCeeEEEEEEEecCCCccc
Confidence            234689999999865   5999999999999999985321100     00000   112345688888862    122  


Q ss_pred             -cEEEEEeCCCcEEEEEcC
Q 004685          161 -HVVWSASEDGTLRQHDFR  178 (737)
Q Consensus       161 -~~l~s~s~Dg~I~vwdl~  178 (737)
                       -.+++|...|.+.+|.+.
T Consensus       155 Si~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEE
T ss_pred             ceEEEEEeCCCCEEEEEEe
Confidence             377889999999999885

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.71  E-value=0.93  Score=47.25  Aligned_cols=147  Identities=14%  Similarity=0.142  Sum_probs=89.2

Q ss_pred             CCEEEEEeC----------CCcEEEEECCCC-----eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685           62 GSLLISGSD----------DTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (737)
Q Consensus        62 g~~lasgs~----------dg~V~vwd~~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~  126 (737)
                      ..+|+.|..          .|.|.++++...     +..........++|++++-..   +. |+.+. ++.|.+|++..
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~---~~-lv~~~-g~~l~v~~l~~  116 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN---GR-LVVAV-GNKLYVYDLDN  116 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET---TE-EEEEE-TTEEEEEEEET
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC---CE-EEEee-cCEEEEEEccC
Confidence            467777743          288999999884     322222234578899988663   34 44443 58999999986


Q ss_pred             CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (737)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (737)
                      ...       +.+...+. ....+.++....   ++++.|.....+.++..+.....             +        .
T Consensus       117 ~~~-------l~~~~~~~-~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~~~-------------l--------~  164 (321)
T PF03178_consen  117 SKT-------LLKKAFYD-SPFYITSLSVFK---NYILVGDAMKSVSLLRYDEENNK-------------L--------I  164 (321)
T ss_dssp             TSS-------EEEEEEE--BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTTE--------------E--------E
T ss_pred             ccc-------chhhheec-ceEEEEEEeccc---cEEEEEEcccCEEEEEEEccCCE-------------E--------E
Confidence            431       11122222 223666666653   58888988889998866542100             0        0


Q ss_pred             eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~  247 (737)
                      .+.. ......++++.|-+++ +.++++..+|.+.++....
T Consensus       165 ~va~-d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  165 LVAR-DYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEE-ESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-S
T ss_pred             EEEe-cCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECC
Confidence            0111 1124568889998764 6999999999999998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.67  E-value=2.7  Score=44.39  Aligned_cols=91  Identities=10%  Similarity=0.122  Sum_probs=52.1

Q ss_pred             cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccC-------------
Q 004685           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH-------------   92 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h-------------   92 (737)
                      ....+-+++...+..++   +......+....|||+|+.+|-.. ++.|.+++..+++..+.-..+.             
T Consensus        21 ~~~~y~i~d~~~~~~~~---l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye   96 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITP---LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE   96 (353)
T ss_dssp             EEEEEEEEETTTTEEEE---SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred             cceeEEEEecCCCceEE---CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence            34455556633333222   222256788999999999998886 4789999988775443221120             


Q ss_pred             ---ccceEEEEEeeCCCCCEEEEEECC-CcEEEE
Q 004685           93 ---SANVFCTKFVPETSDELVVSGAGD-AEVRLF  122 (737)
Q Consensus        93 ---~~~V~~v~~sp~~~~~~l~sgs~d-g~I~iw  122 (737)
                         -..-..+.|||+  +++|+....| ..|..+
T Consensus        97 EEv~~~~~~~~WSpd--~~~la~~~~d~~~v~~~  128 (353)
T PF00930_consen   97 EEVFDRRSAVWWSPD--SKYLAFLRFDEREVPEY  128 (353)
T ss_dssp             HHTSSSSBSEEE-TT--SSEEEEEEEE-TTS-EE
T ss_pred             ccccccccceEECCC--CCEEEEEEECCcCCceE
Confidence               112356889999  6777766443 444433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.66  E-value=3.4  Score=44.75  Aligned_cols=117  Identities=13%  Similarity=0.125  Sum_probs=66.9

Q ss_pred             ceEEEEEcCCCCEEEEE-eCC----CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC---------
Q 004685           52 CVNAISWNSKGSLLISG-SDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---------  117 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasg-s~d----g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg---------  117 (737)
                      .+..+++||+|++||-+ +..    ..|+++|+.+++.+....  .......+.|.++  ++.|+....+.         
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d--~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDD--GKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTT--SSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCC--CCEEEEEEeCcccccccCCC
Confidence            34467899999988854 333    449999999998765331  1222234999999  56665554333         


Q ss_pred             --cEEEEecCCCCCCCCCCCCCCCceeeccCCCc--eeEEEEecCCCcEEEEEeCCC---cEEEEEcCCC
Q 004685          118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG  180 (737)
Q Consensus       118 --~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~~l~s~s~Dg---~I~vwdl~~~  180 (737)
                        .|+.|.+.+.....        ...+......  ...+..++++..+++......   .+.+.|+...
T Consensus       201 ~~~v~~~~~gt~~~~d--------~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSED--------ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             CEEEEEEETTS-GGG---------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CcEEEEEECCCChHhC--------eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence              26777776533210        1223322222  567888885544444444433   3777777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.48  E-value=0.55  Score=53.83  Aligned_cols=131  Identities=13%  Similarity=0.110  Sum_probs=88.3

Q ss_pred             ccccccccccccceeecccCCc-eEEEEEcCC-------CCEEEEEeCCCcEEEEECCCCe--EEEEE--cccCccceEE
Q 004685           31 QMHSSLVRRLSQERELEGHQGC-VNAISWNSK-------GSLLISGSDDTHINVWSYSSRK--LLHSI--ETGHSANVFC   98 (737)
Q Consensus        31 ~~~~~~~~~~~~~~~l~~H~~~-V~~l~~s~~-------g~~lasgs~dg~V~vwd~~~~~--~~~~~--~~~h~~~V~~   98 (737)
                      ++|..-+.+++.+.++.-|... |..+  .|+       ....+.|-.+..|..||.+-..  ++..-  .........|
T Consensus       505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~  582 (794)
T PF08553_consen  505 KLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC  582 (794)
T ss_pred             ceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence            5677778999999999988754 5554  453       3356678788899999987532  33211  0123345667


Q ss_pred             EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004685           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (737)
Q Consensus        99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~  178 (737)
                      ++-..+   .+||.|+.+|.|++||--..          ..-..+.+...+|..|..+.++ +++++.+ +..+.+++..
T Consensus       583 ~aTt~~---G~iavgs~~G~IRLyd~~g~----------~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  583 FATTED---GYIAVGSNKGDIRLYDRLGK----------RAKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLIDTL  647 (794)
T ss_pred             EEecCC---ceEEEEeCCCcEEeecccch----------hhhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEEEe
Confidence            766655   58999999999999994311          1123455678999999999954 5553333 4678888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.33  E-value=0.68  Score=49.85  Aligned_cols=202  Identities=13%  Similarity=0.142  Sum_probs=107.5

Q ss_pred             cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE-C--C-CcEEEEecCCCCCCCCCCCCCCCceeeccCCC
Q 004685           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-G--D-AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (737)
Q Consensus        73 ~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs-~--d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (737)
                      .+.+=|.+ +.....+ ..-...+..-+|+|+  +..++... .  . ..+.++++..+....        +..+.++. 
T Consensus       174 ~l~~~D~d-g~~~~~l-~~~~~~~~~p~ws~~--~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--------i~~~~g~~-  240 (425)
T COG0823         174 ELALGDYD-GYNQQKL-TDSGSLILTPAWSPD--GKKLAYVSFELGGCPRIYYLDLNTGKRPV--------ILNFNGNN-  240 (425)
T ss_pred             eEEEEccC-CcceeEe-cccCcceeccccCcC--CCceEEEEEecCCCceEEEEeccCCccce--------eeccCCcc-
Confidence            34444444 4444444 344566777889999  45443332 2  2 358889998754322        33333333 


Q ss_pred             ceeEEEEecCCCcEEEEEeCCCcEEEE--EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC
Q 004685          149 RVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (737)
Q Consensus       149 ~v~~l~~~p~~~~~l~s~s~Dg~I~vw--dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (737)
                        ..-+|+|++..++++...||...+|  |+......                       .+....+   .-..=.|+|+
T Consensus       241 --~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-----------------------~Lt~~~g---i~~~Ps~spd  292 (425)
T COG0823         241 --GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-----------------------RLTNGFG---INTSPSWSPD  292 (425)
T ss_pred             --CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-----------------------ecccCCc---cccCccCCCC
Confidence              4468999887788888888865554  55554311                       0111111   1113468898


Q ss_pred             CCcEEEEEeCCCcEEEE--ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC-Ce-
Q 004685          227 RPHLLLVGGSDAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-EH-  302 (737)
Q Consensus       227 ~~~~l~t~s~Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d-g~-  302 (737)
                      +..++++.+..|.-.||  |+..... ..+..                  .+.   .-..-.|+|||++|+..+.. |. 
T Consensus       293 G~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~------------------~~~---~~~~p~~SpdG~~i~~~~~~~g~~  350 (425)
T COG0823         293 GSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF------------------SGG---GNSNPVWSPDGDKIVFESSSGGQW  350 (425)
T ss_pred             CCEEEEEeCCCCCcceEEECCCCCce-eEeec------------------cCC---CCcCccCCCCCCEEEEEeccCCce
Confidence            65566666666765555  4443322 11100                  001   11256799999999888853 44 


Q ss_pred             -EEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004685          303 -VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (737)
Q Consensus       303 -v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  338 (737)
                       |.+.|+.++.. .............++.|+...+.+
T Consensus       351 ~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~  386 (425)
T COG0823         351 DIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMF  386 (425)
T ss_pred             eeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEE
Confidence             67777766543 222223333333445555444333

>PHA02713 hypothetical protein; Provisional

Probab=95.01  E-value=1.3  Score=49.88  Aligned_cols=23  Identities=9%  Similarity=0.003  Sum_probs=17.7

Q ss_pred             CCCEEEEEeCCC--eEEEEEcCCCC
Q 004685          290 NGEEVLLSYSGE--HVYLMDVNHAG  312 (737)
Q Consensus       290 ~g~~l~~g~~dg--~v~iwd~~~~~  312 (737)
                      +|+..++|+.++  .+..||+.+.+
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeeecceeehhhcCccccc
Confidence            778888888887  77788877743

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.94  E-value=6.3  Score=42.11  Aligned_cols=232  Identities=13%  Similarity=0.130  Sum_probs=132.5

Q ss_pred             ceEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           52 CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        52 ~V~~l~~s~~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      ....+...+++..+. +-.....+.+.+.......... ......-..++.++.. ...++....+..|.+.|...... 
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~-~~g~~~p~~i~v~~~~-~~vyv~~~~~~~v~vid~~~~~~-  108 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL-SVGGVYPAGVAVNPAG-NKVYVTTGDSNTVSVIDTATNTV-  108 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeec-cCCCccccceeeCCCC-CeEEEecCCCCeEEEEcCcccce-
Confidence            445677888885433 3322235555555522222212 1111445677888884 33566666679999999664221 


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                               ..... -......++++|++..+.++-.  .++++.+.|-.+.+...             . ..       
T Consensus       109 ---------~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~-------------~-~~-------  157 (381)
T COG3391         109 ---------LGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA-------------T-IP-------  157 (381)
T ss_pred             ---------eeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-------------E-Ee-------
Confidence                     22221 1225678999996655555555  36888888877765320             0 11       


Q ss_pred             cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (737)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s  288 (737)
                          ....+ ..++++|++...+++-..++.|.++|........ -. .            ....   .....-..+.++
T Consensus       158 ----vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-~------------~~~~---~~~~~P~~i~v~  215 (381)
T COG3391         158 ----VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-V------------GSLV---GVGTGPAGIAVD  215 (381)
T ss_pred             ----cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc-c------------cccc---ccCCCCceEEEC
Confidence                11112 7889999864455555688999999976554331 00 0            0000   001124568999


Q ss_pred             CCCCEEEEEeCC---CeEEEEEcCCCCcceeeeecCC-CCeeeeeccCCCCccCC
Q 004685          289 PNGEEVLLSYSG---EHVYLMDVNHAGGRAMRYTVGD-ASKIMSFTPTLNGLELQ  339 (737)
Q Consensus       289 p~g~~l~~g~~d---g~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~  339 (737)
                      |+|.++.+....   +.+...|..++.........+. ....+.+.|.+......
T Consensus       216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         216 PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVA  270 (381)
T ss_pred             CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEE
Confidence            999988777764   5899999888654444233322 55667777776554443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.83  E-value=6.9  Score=42.21  Aligned_cols=37  Identities=5%  Similarity=-0.014  Sum_probs=29.2

Q ss_pred             cceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004685          216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (737)
Q Consensus       216 ~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~  253 (737)
                      .++..|++||+ ++.+|.-..+|.+.+.+....+.+..
T Consensus       217 ~~i~~iavSpn-g~~iAl~t~~g~l~v~ssDf~~~~~e  253 (410)
T PF04841_consen  217 GPIIKIAVSPN-GKFIALFTDSGNLWVVSSDFSEKLCE  253 (410)
T ss_pred             CCeEEEEECCC-CCEEEEEECCCCEEEEECcccceeEE
Confidence            57899999997 58999999999999998765544333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.83  E-value=4.1  Score=40.09  Aligned_cols=233  Identities=12%  Similarity=0.100  Sum_probs=123.9

Q ss_pred             eEEEEEcCC-CCEEEEEeCCCcE-EEEECCCCeEEEEEcccC-ccceEEEEEeeCCCCCEEEEEECC-----CcEEEEec
Q 004685           53 VNAISWNSK-GSLLISGSDDTHI-NVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGD-----AEVRLFNL  124 (737)
Q Consensus        53 V~~l~~s~~-g~~lasgs~dg~V-~vwd~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~iwd~  124 (737)
                      -..|+|+|. ..-++-+-.-|+. .++|..+.+....+.... ...--.-.|+|+  |.+|...-.|     |.|-|||.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~d--G~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPD--GRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCC--CcEEEeecCCCCCCCceEEEEec
Confidence            346788885 4456666666664 688998877665542110 111223459999  6777665433     78999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE-EcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH-DFRQGSSCPPAGSSHQECRNILLDLRCG  203 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw-dl~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (737)
                      +..-         ..+..+..|.-....+.|.+ ++..++.+  +|-|... |....+..    ....+....+.+-.++
T Consensus       148 r~~f---------qrvgE~~t~GiGpHev~lm~-DGrtlvva--nGGIethpdfgR~~lN----ldsMePSlvlld~atG  211 (366)
T COG3490         148 REGF---------QRVGEFSTHGIGPHEVTLMA-DGRTLVVA--NGGIETHPDFGRTELN----LDSMEPSLVLLDAATG  211 (366)
T ss_pred             cccc---------ceecccccCCcCcceeEEec-CCcEEEEe--CCceecccccCccccc----hhhcCccEEEEecccc
Confidence            8532         33566777877788899999 55666554  3556655 33222211    1122334455555555


Q ss_pred             ceeeccCCC--CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc
Q 004685          204 AKRSLADPP--KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (737)
Q Consensus       204 ~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (737)
                      ........+  .+...+..++..++ +..++.+-..|.        .....-+.....+...+..+...... ...-...
T Consensus       212 ~liekh~Lp~~l~~lSiRHld~g~d-gtvwfgcQy~G~--------~~d~ppLvg~~~~g~~l~~~~~pee~-~~~~anY  281 (366)
T COG3490         212 NLIEKHTLPASLRQLSIRHLDIGRD-GTVWFGCQYRGP--------RNDLPPLVGHFRKGEPLEFLDLPEEQ-TAAFANY  281 (366)
T ss_pred             chhhhccCchhhhhcceeeeeeCCC-CcEEEEEEeeCC--------CccCCcceeeccCCCcCcccCCCHHH-HHHHHhh
Confidence            554444444  45566777777775 333333222111        00000011111111111111100000 0001113


Q ss_pred             eeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc
Q 004685          282 LTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGG  313 (737)
Q Consensus       282 i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~  313 (737)
                      |-+++.+.+..+++..+- .+...+||..++..
T Consensus       282 igsiA~n~~~glV~lTSP~GN~~vi~da~tG~v  314 (366)
T COG3490         282 IGSIAANRRDGLVALTSPRGNRAVIWDAATGAV  314 (366)
T ss_pred             hhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence            778888876666666666 56788999999763

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.66  E-value=1.1  Score=49.71  Aligned_cols=85  Identities=14%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             cceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEE
Q 004685          216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL  295 (737)
Q Consensus       216 ~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~  295 (737)
                      .....+.++|++...++++..+.++.|+|+.+.+..-  .....+..++..-        -.-+..-...+|+++|....
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~--~~~~~~~~~vvae--------vevGlGPLHTaFDg~G~ayt  390 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF--DGKIKPRDAVVAE--------PELGLGPLHTAFDGRGNAYT  390 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh--hccCCccceEEEe--------eccCCCcceEEECCCCCEEE
Confidence            3456789999865556666679999999998765311  0000110111000        00011244578999998777


Q ss_pred             EEeCCCeEEEEEcCC
Q 004685          296 LSYSGEHVYLMDVNH  310 (737)
Q Consensus       296 ~g~~dg~v~iwd~~~  310 (737)
                      +-.-|..|..||+.+
T Consensus       391 slf~dsqv~kwn~~~  405 (635)
T PRK02888        391 TLFLDSQIVKWNIEA  405 (635)
T ss_pred             eEeecceeEEEehHH
Confidence            777799999999987

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.32  E-value=0.13  Score=48.61  Aligned_cols=109  Identities=16%  Similarity=0.126  Sum_probs=64.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (737)
Q Consensus        61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (737)
                      -+..+++|+.+|.|.+|....-.........-...|.++--.-+. +.+..+++.||.|+.|++.....          +
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~-~~~~c~~~~dg~ir~~n~~p~k~----------~  137 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRD-SSLGCVGAQDGRIRACNIKPNKV----------L  137 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccc-cceeEEeccCCceeeeccccCce----------e
Confidence            345788999999999999873211111111223344444333332 56889999999999999885321          3


Q ss_pred             eeeccCC-CceeEEEEecCCCcEEEEE--eCCCcEEEEEcCCCC
Q 004685          141 ALYQCHT-RRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQGS  181 (737)
Q Consensus       141 ~~~~~h~-~~v~~l~~~p~~~~~l~s~--s~Dg~I~vwdl~~~~  181 (737)
                      .....|. .++....... ...+++.+  |.|..++.|++....
T Consensus       138 g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  138 GYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             eeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchhhhh
Confidence            3333454 3444444444 33555565  667777777776543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.29  E-value=5.2  Score=45.13  Aligned_cols=180  Identities=15%  Similarity=0.132  Sum_probs=91.4

Q ss_pred             cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKF  101 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d------g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~  101 (737)
                      ..+..|+...+.......+..... -.++++. ++.+.++|+.|      ..+..||..+.+-.. + .....+=.....
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~-a~M~~~R~~~~v  376 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-V-APMNTKRSDFGV  376 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-c-CCccCcccccee
Confidence            445555544444444444442222 3344443 45788889888      346678887766433 2 111111112222


Q ss_pred             eeCCCCCEEEEEECCCc-----EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC------
Q 004685          102 VPETSDELVVSGAGDAE-----VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG------  170 (737)
Q Consensus       102 sp~~~~~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg------  170 (737)
                      ..-. |.+.+.|+.||.     |-.||..+..        +..+..+..   .........-++.+.+.||.++      
T Consensus       377 ~~l~-g~iYavGG~dg~~~l~svE~YDp~~~~--------W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~  444 (571)
T KOG4441|consen  377 AVLD-GKLYAVGGFDGEKSLNSVECYDPVTNK--------WTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLN  444 (571)
T ss_pred             EEEC-CEEEEEeccccccccccEEEecCCCCc--------ccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccc
Confidence            2221 678899998865     5566666422        333333332   2222222222668888888665      


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc-----EEEEEC
Q 004685          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-----ARLYDR  245 (737)
Q Consensus       171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~-----i~iwd~  245 (737)
                      ++..||..+..-                       ..+........... ++.-  ++.++++|+.|+.     |..||.
T Consensus       445 sve~YDP~t~~W-----------------------~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp  498 (571)
T KOG4441|consen  445 SVECYDPETNTW-----------------------TLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDP  498 (571)
T ss_pred             eEEEEcCCCCce-----------------------eecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcC
Confidence            455666665541                       11222221111222 3332  3578888988873     666777


Q ss_pred             CCCC
Q 004685          246 RMLP  249 (737)
Q Consensus       246 ~~~~  249 (737)
                      .+.+
T Consensus       499 ~~~~  502 (571)
T KOG4441|consen  499 ETNQ  502 (571)
T ss_pred             CCCc
Confidence            7544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.06  E-value=7.5  Score=39.27  Aligned_cols=159  Identities=16%  Similarity=0.159  Sum_probs=86.1

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCC
Q 004685           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (737)
Q Consensus        60 ~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~  139 (737)
                      ..++.|+.|..+| |.+++.........+  .+...|..+...|+  -+.|+.-+ |+.+.++++..............+
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~~--~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLPE--LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEecc--cCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            4678999999988 899998333222222  13344999999998  35555554 599999999864332210000000


Q ss_pred             c----eeeccCCCceeEEE--EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC
Q 004685          140 S----ALYQCHTRRVKKLA--VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  213 (737)
Q Consensus       140 ~----~~~~~h~~~v~~l~--~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (737)
                      .    .........+...+  -...+...| .....++|.+|..........         ..+.        .+    .
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L-~va~kk~i~i~~~~~~~~~f~---------~~~k--------e~----~  136 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRL-CVAVKKKILIYEWNDPRNSFS---------KLLK--------EI----S  136 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEE-EEEECCEEEEEEEECCccccc---------ceeE--------EE----E
Confidence            0    00111223344443  112233344 444456899998876421100         0000        01    0


Q ss_pred             CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004685          214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (737)
Q Consensus       214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~  250 (737)
                      -...+.+++|.+   +.++.|..++ ..+.|+.++..
T Consensus       137 lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~  169 (275)
T PF00780_consen  137 LPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSP  169 (275)
T ss_pred             cCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCc
Confidence            125677888884   4777776544 66888886554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.71  E-value=0.18  Score=57.73  Aligned_cols=73  Identities=34%  Similarity=0.584  Sum_probs=56.8

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCC-CCEEEEEECCCcEEEEecC
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~~l~sgs~dg~I~iwd~~  125 (737)
                      .++|++++|+.+|.+++.|-.+|.|.+||+..++..+.+ ..|..+.+++-+.-..+ +..++++...|.  +|.+.
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i-~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI-TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee-eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            579999999999999999999999999999999988888 66766666554443211 356888877776  56554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.62  E-value=1.9  Score=48.16  Aligned_cols=123  Identities=13%  Similarity=0.109  Sum_probs=77.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      ..+.-+.-|.-++..+.-+....+.|||...+...........+.|.++.|....+++.+++.+..+.|.++.-...+..
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            34555555555554444445567999999988755443234578999999998776899999999999999865422111


Q ss_pred             CCCCCCCCCceee--ccCC-CceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004685          131 GLDDNAITPSALY--QCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (737)
Q Consensus       131 ~~~~~~~~~~~~~--~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl  177 (737)
                      . ....+.++..+  ..|+ .+|.+..|.+ ++.+++.++  ..+.++|-
T Consensus       110 ~-~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  110 N-KGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             c-CCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECC
Confidence            1 11112333322  3344 6789999998 545554333  46777763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.56  E-value=7.7  Score=37.69  Aligned_cols=104  Identities=16%  Similarity=0.203  Sum_probs=73.4

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCce
Q 004685           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (737)
Q Consensus        62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (737)
                      ..+++.|+..+.+.--|..+|..+..-  .-...|.+-+.--   |++++.|+..|.+++.+.+++..          ..
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~--ilg~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~----------~w   87 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEA--ILGVRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQ----------IW   87 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeeh--hhCceeeeeeEEE---CCEEEEEEccCcEEEEEecchhh----------ee
Confidence            457888999999999999999877653  2445566555553   58999999999999999987532          22


Q ss_pred             eeccCCCcee-EEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          142 LYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       142 ~~~~h~~~v~-~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                      .+... +.|. .....+ ++.++..|+.|++.+..|.++...
T Consensus        88 ~f~~~-~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~c  127 (354)
T KOG4649|consen   88 NFVIL-ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGC  127 (354)
T ss_pred             eeeeh-hhhccceEEcC-CCceEEEecCCCcEEEecccccce
Confidence            22211 1121 223344 568999999999999999988753

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.54  E-value=0.42  Score=54.91  Aligned_cols=101  Identities=17%  Similarity=0.196  Sum_probs=72.8

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc
Q 004685          160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF  239 (737)
Q Consensus       160 ~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~  239 (737)
                      ...++.|+..|.+...|++..-.                        ..........+|++++|+.+ +..++.|-.+|.
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~------------------------~~~~ne~v~~~Vtsvafn~d-g~~l~~G~~~G~  153 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLG------------------------PLHQNERVQGPVTSVAFNQD-GSLLLAGLGDGH  153 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccc------------------------hhhcCCccCCcceeeEecCC-CceeccccCCCc
Confidence            35788888889999999876421                        11222334678999999997 689999999999


Q ss_pred             EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeE
Q 004685          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV  303 (737)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v  303 (737)
                      |.+||+..++.++.+..                  +++....|..+.+..++..++++...|.+
T Consensus       154 V~v~D~~~~k~l~~i~e------------------~~ap~t~vi~v~~t~~nS~llt~D~~Gsf  199 (1206)
T KOG2079|consen  154 VTVWDMHRAKILKVITE------------------HGAPVTGVIFVGRTSQNSKLLTSDTGGSF  199 (1206)
T ss_pred             EEEEEccCCcceeeeee------------------cCCccceEEEEEEeCCCcEEEEccCCCce
Confidence            99999998776655432                  33333346666777777778888777763

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.29  E-value=6.1  Score=41.77  Aligned_cols=37  Identities=14%  Similarity=0.079  Sum_probs=25.2

Q ss_pred             ceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCcceee
Q 004685          281 HLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMR  317 (737)
Q Consensus       281 ~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~~  317 (737)
                      -|+.+..|.|.++|+.++- +|.|+.||+.....+...
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~  350 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV  350 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence            4899999999999999888 899999999997655443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.06  E-value=4.8  Score=45.40  Aligned_cols=108  Identities=13%  Similarity=0.119  Sum_probs=63.3

Q ss_pred             CCCCEEEEEeCCC------cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC------CcEEEEecCCC
Q 004685           60 SKGSLLISGSDDT------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRF  127 (737)
Q Consensus        60 ~~g~~lasgs~dg------~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~iwd~~~~  127 (737)
                      ..+.+++.|+.++      .+..+|..+++............-.+++...+   .++++|+.|      ..+..||....
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~---~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG---KLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC---EEEEEccccCCCcccceEEEecCCCC
Confidence            3456777777763      57788988775443322223344456666654   788999998      34667777653


Q ss_pred             CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC-----cEEEEEcCCCC
Q 004685          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGS  181 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg-----~I~vwdl~~~~  181 (737)
                      +        +..+..+...........+   ++.+.+.|+.||     ++-.||..+.+
T Consensus       360 ~--------W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  360 Q--------WTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             c--------eeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCc
Confidence            3        2223333332222222222   668888999886     36667766554

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.78  E-value=8.2  Score=41.38  Aligned_cols=143  Identities=15%  Similarity=0.172  Sum_probs=89.4

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-----EEEECCCcEEEEecCCCCCCCCCCCCCCC
Q 004685           65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-----VSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (737)
Q Consensus        65 lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-----~sgs~dg~I~iwd~~~~~~~~~~~~~~~~  139 (737)
                      |.++.....|.--|++.|+.+... ..+.. |.-+.+.|+..+..+     +.|-.|..|+-||.+-....        .
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--------k  418 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--------K  418 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc--------e
Confidence            445666677888899999999888 44544 777778886422222     34556888999999843221        1


Q ss_pred             ceeeccCC----CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCc
Q 004685          140 SALYQCHT----RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT  215 (737)
Q Consensus       140 ~~~~~~h~----~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (737)
                      +....+|.    ..-.|++-.  ...+++.||.+|.|++||- .+..                        .-..+|+-.
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~------------------------AKTAlPgLG  471 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRR------------------------AKTALPGLG  471 (644)
T ss_pred             eeeeeccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhh------------------------hhhcccccC
Confidence            22222221    122344433  4468889999999999995 3321                        122344556


Q ss_pred             cceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004685          216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (737)
Q Consensus       216 ~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~  246 (737)
                      .+|..+..+.+ |.++++.+ +..+.+.++.
T Consensus       472 ~~I~hVdvtad-GKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  472 DAIKHVDVTAD-GKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             CceeeEEeecc-CcEEEEec-ccEEEEEEEe
Confidence            78888888886 45554443 6777777765

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.77  E-value=0.27  Score=48.59  Aligned_cols=107  Identities=24%  Similarity=0.213  Sum_probs=86.3

Q ss_pred             ccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCc
Q 004685          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS  439 (737)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  439 (737)
                      ......+...++.....+. |-.|+..|..+|...+.+      .++||+|+.+++..+-.   -.|+.||..++.+||.
T Consensus        78 ~~~AE~LK~eGN~~m~~~~-Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~---~~AVkDce~Al~iDp~  147 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKD-YQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEY---EDAVKDCESALSIDPH  147 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcch---HHHHHHHHHHHhcChH
Confidence            3344566666666555555 778999999999988776      68999999999986643   3678999999999999


Q ss_pred             ccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchh
Q 004685          440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (737)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (737)
                      ..++.-.+..++..++++..+.......-.+.|....
T Consensus       148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~  184 (304)
T KOG0553|consen  148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES  184 (304)
T ss_pred             HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH
Confidence            9999888888999999999998887777778888663

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=92.75  E-value=24  Score=41.07  Aligned_cols=84  Identities=14%  Similarity=0.246  Sum_probs=58.3

Q ss_pred             eeeeecccCC-CCEEEEec----------CCCcEEEEEcCcccEEEEeecC--CCceEEEEecCCCCeEEEEecCCcEEE
Q 004685          629 IKQASFLGQR-GDYIASGS----------DDGRWFIWEKQTGRLIKMLLGD--EAVVNCVQCHPFDCVVATSGIDNTIKI  695 (737)
Q Consensus       629 i~~~~~~s~d-~~~l~sgs----------~D~~i~iWd~~t~~~~~~l~gH--~~~V~~v~~sp~~~~l~S~~~Dg~i~l  695 (737)
                      +.++. |..| +.|++.|.          ..|.|.|+.+..+.-++....|  ++.|.++.- -+|++||  |....|||
T Consensus       777 i~s~~-~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA--~In~~vrL  852 (1096)
T KOG1897|consen  777 IISCK-FTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLA--GINQSVRL  852 (1096)
T ss_pred             eeeee-ecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEE--ecCcEEEE
Confidence            33444 4555 67777774          2588999998886666666665  444444332 2466775  56789999


Q ss_pred             EcCCCCCCccccCCCCCCChh
Q 004685          696 WTPSASVPSIVSGGAAGPDTA  716 (737)
Q Consensus       696 W~~~~~~~~~~~~~~~~~~~~  716 (737)
                      +++.+++.++....|..+..+
T Consensus       853 ye~t~~~eLr~e~~~~~~~~a  873 (1096)
T KOG1897|consen  853 YEWTTERELRIECNISNPIIA  873 (1096)
T ss_pred             EEccccceehhhhcccCCeEE
Confidence            999999999988888877653

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=92.62  E-value=0.2  Score=47.40  Aligned_cols=70  Identities=13%  Similarity=0.149  Sum_probs=61.5

Q ss_pred             cCCCCEEEEecCCCcEEEEEcCcccEEEEeecCC-CceEEEEecCCCCeEEEE--ecCCcEEEEcCCCCCCcc
Q 004685          636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVATS--GIDNTIKIWTPSASVPSI  705 (737)
Q Consensus       636 s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~-~~V~~v~~sp~~~~l~S~--~~Dg~i~lW~~~~~~~~~  705 (737)
                      ..++.+..+|..||.|+.|+++.++.+...-.|. ..+.....+..+..++++  |.|..++.|++..-....
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~  183 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES  183 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence            4466799999999999999999999999999998 888888899889999999  999999999998755444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.27  E-value=6.9  Score=38.59  Aligned_cols=61  Identities=11%  Similarity=0.238  Sum_probs=44.6

Q ss_pred             EEcCCCCEEEEEeC-----CCcEEEEECCCC-eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685           57 SWNSKGSLLISGSD-----DTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (737)
Q Consensus        57 ~~s~~g~~lasgs~-----dg~V~vwd~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw  122 (737)
                      .|||||.+|...-.     -|.|-|||...+ +.+..+ ..|.-....+.|.+|  |..++.+  +|-|..-
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~D--Grtlvva--nGGIeth  186 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMAD--GRTLVVA--NGGIETH  186 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecC--CcEEEEe--CCceecc
Confidence            48999998876533     378999998754 355666 678888899999999  6777665  3445444

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.25  E-value=13  Score=38.28  Aligned_cols=194  Identities=10%  Similarity=0.067  Sum_probs=100.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc---c-CccceEEEEEeeCCCCCEEEEEEC---------CCcE
Q 004685           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVPETSDELVVSGAG---------DAEV  119 (737)
Q Consensus        53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~---~-h~~~V~~v~~sp~~~~~~l~sgs~---------dg~I  119 (737)
                      +.++..-..+.+|+++..  -+.+++.+++..+..+..   + .....+.+...|+  |.+.++-..         ...-
T Consensus        68 ~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~G  143 (307)
T COG3386          68 FSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPTG  143 (307)
T ss_pred             cccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCcc
Confidence            344433334445555543  467777766655333211   1 1245567888888  566554333         0111


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      .+|.+... +        .....+..+-..-+.|+|+|++..++++=+..+.|.-|++......       ........ 
T Consensus       144 ~lyr~~p~-g--------~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~-------~~~~~~~~-  206 (307)
T COG3386         144 SLYRVDPD-G--------GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP-------IGGRRGFV-  206 (307)
T ss_pred             eEEEEcCC-C--------CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc-------cCCcceEE-
Confidence            34444321 1        1123333334455789999966555555566688998888641100       00001111 


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC-cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                                ......+..-.++...+ +.+.+++..+| .|.+|+.. ++++..+..+.                    
T Consensus       207 ----------~~~~~~G~PDG~~vDad-G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--------------------  254 (307)
T COG3386         207 ----------DFDEEPGLPDGMAVDAD-GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--------------------  254 (307)
T ss_pred             ----------EccCCCCCCCceEEeCC-CCEEEecccCCceEEEECCC-CcEEEEEECCC--------------------
Confidence                      11112344556777776 45554444443 99999988 76665543221                    


Q ss_pred             ccceeEEEEc-CCCCEEEEEeCC
Q 004685          279 SLHLTHVTFS-PNGEEVLLSYSG  300 (737)
Q Consensus       279 ~~~i~~v~~s-p~g~~l~~g~~d  300 (737)
                       ..+++++|- |+.+.|++.+..
T Consensus       255 -~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         255 -KRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             -CCCccceEeCCCcCEEEEEecC
Confidence             136777775 566666666553

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.16  E-value=16  Score=40.49  Aligned_cols=64  Identities=9%  Similarity=0.066  Sum_probs=42.4

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcccCc-----cceE--EEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHS-----ANVF--CTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~-----~~V~--~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      +..++.++.++.|.-.|..+++.+..+.....     ..+.  .+....   +..++.++.++.|..+|.++++
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~---~~~V~v~~~~g~v~AlD~~TG~  131 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWD---PRKVFFGTFDGRLVALDAETGK  131 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEcc---CCeEEEecCCCeEEEEECCCCC
Confidence            45677788889999999999998877632211     0010  111111   2578888889999999988654

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.08  E-value=12  Score=41.41  Aligned_cols=50  Identities=14%  Similarity=0.206  Sum_probs=34.4

Q ss_pred             CCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEE--EEecCCCC-eEEEEe
Q 004685          638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNC--VQCHPFDC-VVATSG  688 (737)
Q Consensus       638 d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~--v~~sp~~~-~l~S~~  688 (737)
                      .+++|+.|+.||.++.+|.+||+++-+++--. .+.+  +.|..+++ |+++.+
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~-~~~a~P~~~~~~g~~yv~~~~  457 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKELWKFRTPS-GIQATPMTYEVNGKQYVGVMV  457 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCceeeEEECCC-CceEcCEEEEeCCEEEEEEEe
Confidence            46788899999999999999999997776422 2222  22444665 555543

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.02  E-value=2.3  Score=46.06  Aligned_cols=145  Identities=17%  Similarity=0.183  Sum_probs=73.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC-CCCCCCCCCc
Q 004685           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR-GLDDNAITPS  140 (737)
Q Consensus        62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~~~~~  140 (737)
                      |.+|+..+.+ .|.+||+.+++.+..+.   -.+|..+.|+++  +++++-.+.+ .+.|++....... ..+.......
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~---v~~vk~V~Ws~~--g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f  189 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRID---VSAVKYVIWSDD--GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAF  189 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEES---S-E-EEEEE-TT--SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEe---cCCCcEEEEECC--CCEEEEEeCC-eEEEEEecchhcccccccCchhce
Confidence            8888777665 89999999999999882   234899999999  7888888754 6778776531000 0000000023


Q ss_pred             eeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEE
Q 004685          141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  220 (737)
Q Consensus       141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (737)
                      ..+......|.+..|.. + -+++|. .. +++.  +..+..                       ..+...   ..++.-
T Consensus       190 ~~~~E~~~~IkSg~W~~-d-~fiYtT-~~-~lkY--l~~Ge~-----------------------~~i~~l---d~~~yl  237 (443)
T PF04053_consen  190 ELIHEISERIKSGCWVE-D-CFIYTT-SN-HLKY--LVNGET-----------------------GIIAHL---DKPLYL  237 (443)
T ss_dssp             EEEEEE-S--SEEEEET-T-EEEEE--TT-EEEE--EETTEE-----------------------EEEEE----SS--EE
T ss_pred             EEEEEecceeEEEEEEc-C-EEEEEc-CC-eEEE--EEcCCc-----------------------ceEEEc---CCceEE
Confidence            33333367888999975 3 444443 33 6766  444431                       111111   123444


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEECC
Q 004685          221 CDISSTRPHLLLVGGSDAFARLYDRR  246 (737)
Q Consensus       221 i~~sp~~~~~l~t~s~Dg~i~iwd~~  246 (737)
                      +...|. .+.+.....|+.+..+.+.
T Consensus       238 lgy~~~-~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  238 LGYLPK-ENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEEETT-TTEEEEE-TT--EEEEE--
T ss_pred             EEEEcc-CCEEEEEECCCCEEEEEEC
Confidence            555664 3577777777777777665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.87  E-value=0.67  Score=45.03  Aligned_cols=69  Identities=16%  Similarity=0.343  Sum_probs=54.1

Q ss_pred             ecccCCCCEEEEecCCCcEEEEEcCcccEEEE-------ee-------cCCCceEEEEecCCCCeEEEEecCCcEEEEcC
Q 004685          633 SFLGQRGDYIASGSDDGRWFIWEKQTGRLIKM-------LL-------GDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP  698 (737)
Q Consensus       633 ~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~-------l~-------gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~  698 (737)
                      +++..+++||+.-..+|.++|||+.+++++..       |.       .....|..+..+.+|.-|++-+ +|..+.|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            34778899999999999999999999875532       23       4677899999999998777766 467788776


Q ss_pred             CCCC
Q 004685          699 SASV  702 (737)
Q Consensus       699 ~~~~  702 (737)
                      .-+.
T Consensus        95 ~L~~   98 (219)
T PF07569_consen   95 DLGC   98 (219)
T ss_pred             ccce
Confidence            6553

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.81  E-value=0.77  Score=42.56  Aligned_cols=121  Identities=28%  Similarity=0.277  Sum_probs=89.9

Q ss_pred             chhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhc-ccccchhhhHHHHHHhhccCCcc
Q 004685          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKR-KWKNDAQMAIRDCYNARRIDSSS  440 (737)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~  440 (737)
                      +...+..-++..+..|. |-.+...|..+|..++.... ..+.++|++|+.+++.. .|.    +++.||..++.+.|..
T Consensus        94 kad~lK~EGN~~F~ngd-yeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e----~aI~dcsKaiel~pty  167 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNGD-YEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWE----SAIEDCSKAIELNPTY  167 (271)
T ss_pred             HHHHHHHHHHHhhhccc-HHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHH----HHHHHHHhhHhcCchh
Confidence            34445555666666666 55677888888988877544 77889999999999954 444    6789999999999999


Q ss_pred             cchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhh
Q 004685          441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (737)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (737)
                      .++............++.+++.-........|+......+...+...+
T Consensus       168 ~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i  215 (271)
T KOG4234|consen  168 EKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI  215 (271)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence            988887788888888888888777777777777665555555544433

>PHA02713 hypothetical protein; Provisional

Probab=91.71  E-value=4.1  Score=45.96  Aligned_cols=22  Identities=0%  Similarity=0.155  Sum_probs=16.5

Q ss_pred             CcEEEEEeCCC--cEEEEECCCCC
Q 004685          228 PHLLLVGGSDA--FARLYDRRMLP  249 (737)
Q Consensus       228 ~~~l~t~s~Dg--~i~iwd~~~~~  249 (737)
                      +.++++|+.|+  .+-.||..+.+
T Consensus       513 ~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        513 NTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CEEEEEeeecceeehhhcCccccc
Confidence            57999999888  66777776543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.64  E-value=2.7  Score=48.98  Aligned_cols=161  Identities=16%  Similarity=0.088  Sum_probs=94.0

Q ss_pred             CccceEEEEEeeCCCCCEE--EEEECCCcEEEEecCCCCCCCCCCCC-CCCceeeccCCCceeEEEEecCCCcEEEEEeC
Q 004685           92 HSANVFCTKFVPETSDELV--VSGAGDAEVRLFNLSRFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASE  168 (737)
Q Consensus        92 h~~~V~~v~~sp~~~~~~l--~sgs~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  168 (737)
                      ...+|..+..+++  ....  +..+.+-.|..||++........... +..............++.|.|.-....+.+..
T Consensus        99 k~~pi~~~v~~~D--~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~  176 (1405)
T KOG3630|consen   99 KEIPIVIFVCFHD--ATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS  176 (1405)
T ss_pred             ccccceEEEeccC--CceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcc
Confidence            3456667777777  3433  33344557899999864332110000 00011111223345688998866666778889


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004685          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (737)
Q Consensus       169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~  248 (737)
                      |+.|.+.-+......                        +..+ ......++++|+|. +..+++|-..|++.-|-... 
T Consensus       177 dlsl~V~~~~~~~~~------------------------v~s~-p~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~l-  229 (1405)
T KOG3630|consen  177 DLSLRVKSTKQLAQN------------------------VTSF-PVTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSL-  229 (1405)
T ss_pred             ccchhhhhhhhhhhh------------------------hccc-CcccceeeEEeccc-cceeeEecCCCeEEEeeccc-
Confidence            999999877655422                        1111 12356799999996 68999999999998886542 


Q ss_pred             CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe
Q 004685          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY  298 (737)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~  298 (737)
                      +....+.   +|+         .     ...+.|.+|+|-....++++=+
T Consensus       230 eik~~ip---~Pp---------~-----~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  230 EIKSEIP---EPP---------V-----EENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             ceeeccc---CCC---------c-----CCCcceeEEEEecceeEEEEec
Confidence            2111111   011         0     1133699999988777665543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.43  E-value=4.3  Score=44.10  Aligned_cols=159  Identities=11%  Similarity=0.149  Sum_probs=87.0

Q ss_pred             CceEEEEEcCCCCEEE-EEe--CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCC--CCEEEEEECCCcEEEEecC
Q 004685           51 GCVNAISWNSKGSLLI-SGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS--DELVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        51 ~~V~~l~~s~~g~~la-sgs--~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~--~~~l~sgs~dg~I~iwd~~  125 (737)
                      .+|..++|. ||+.++ |.-  .+|.++.=|   ...+..|     .-|..+.|.|-..  ...|++......|.+|.+.
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF-----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF-----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc-----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            488999997 565444 432  234444322   2345555     4488999999521  1245566677889999987


Q ss_pred             CCCCCCCCCCCCCCceeec---cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          126 RFSGRGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                      .....   .+++-..++..   ...---..+.|+| ...+|+.-.....-.+++++....            .+..|+  
T Consensus        91 ~s~~e---~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~s------------rVkaDi--  152 (671)
T PF15390_consen   91 PSTTE---RNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSS------------RVKADI--  152 (671)
T ss_pred             cCccc---cccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCc------------eEEEec--
Confidence            32111   11111111111   0011124578999 546666555544445566654431            122222  


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~  246 (737)
                                ...+.|.|.+|.+++.+++++.+..=.-+|||-.
T Consensus       153 ----------~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  153 ----------KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ----------cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence                      2346789999999865555555554566788764

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.31  E-value=14  Score=35.41  Aligned_cols=113  Identities=15%  Similarity=0.125  Sum_probs=72.5

Q ss_pred             CceeEEEEecCCCcEEEEEeCCCcEEEEE--cCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec
Q 004685          148 RRVKKLAVEVGNPHVVWSASEDGTLRQHD--FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS  225 (737)
Q Consensus       148 ~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  225 (737)
                      ..-+.++|+.+...+.++-+.+-.|.-||  ..++..         .....+++++......       ......++...
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~---------snr~~i~dlrk~~~~e-------~~~PDGm~ID~  221 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL---------SNRKVIFDLRKSQPFE-------SLEPDGMTIDT  221 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccc---------cCcceeEEeccCCCcC-------CCCCCcceEcc
Confidence            33467899876666777778888898888  555542         2345566665432211       11223345555


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc-CCCCEEEEEe
Q 004685          226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSY  298 (737)
Q Consensus       226 ~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s-p~g~~l~~g~  298 (737)
                      + +++++++-..++|..+|..+++.+.++..+                     ...|++++|- |+-..+++.+
T Consensus       222 e-G~L~Va~~ng~~V~~~dp~tGK~L~eiklP---------------------t~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  222 E-GNLYVATFNGGTVQKVDPTTGKILLEIKLP---------------------TPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             C-CcEEEEEecCcEEEEECCCCCcEEEEEEcC---------------------CCceEEEEecCCCccEEEEEe
Confidence            4 688888889999999999999987766432                     1149999997 4444444443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.10  E-value=13  Score=43.02  Aligned_cols=98  Identities=13%  Similarity=0.162  Sum_probs=57.5

Q ss_pred             CccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC--
Q 004685          214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN--  290 (737)
Q Consensus       214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~--  290 (737)
                      -...|..+.++|+ +.+++..+..|. .|..+.. ......+........|-.......+. ..+....|..+.|+|.  
T Consensus        83 ~~f~v~~i~~n~~-g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~~~~~i~qv~WhP~s~  159 (717)
T PF10168_consen   83 PLFEVHQISLNPT-GSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSNSSLEIKQVRWHPWSE  159 (717)
T ss_pred             CceeEEEEEECCC-CCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhc-cCCCCceEEEEEEcCCCC
Confidence            3468899999997 578888877554 4444431 11111111111111111111111111 1233346999999996  


Q ss_pred             -CCEEEEEeCCCeEEEEEcCCCCcc
Q 004685          291 -GEEVLLSYSGEHVYLMDVNHAGGR  314 (737)
Q Consensus       291 -g~~l~~g~~dg~v~iwd~~~~~~~  314 (737)
                       +.+|++-+.|+++++||+.....+
T Consensus       160 ~~~~l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  160 SDSHLVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             CCCeEEEEecCCEEEEEecCCCCCC
Confidence             589999999999999999876543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.06  E-value=0.63  Score=31.46  Aligned_cols=31  Identities=19%  Similarity=0.337  Sum_probs=26.9

Q ss_pred             ceEEEEEecCCC--cEEEEEeCCCcEEEEECCC
Q 004685          217 SLKSCDISSTRP--HLLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       217 ~v~~i~~sp~~~--~~l~t~s~Dg~i~iwd~~~  247 (737)
                      .+.+|.|+|..+  .+|+.+-.-+.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            578999998755  6899998899999999995

It contains a characteristic DLL sequence motif.

>PRK13616 lipoprotein LpqB; Provisional

Probab=90.85  E-value=23  Score=40.11  Aligned_cols=104  Identities=9%  Similarity=0.052  Sum_probs=58.2

Q ss_pred             CceEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC------
Q 004685           51 GCVNAISWNSKGSLLISGS------DDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------  116 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs------~dg--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------  116 (737)
                      ..+...+++|+|+.+|...      .|+  .|.+++.. +.. ..+..+  ...+.-.|+|+  |..|.+....      
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g--~~~t~PsWspD--G~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG--HSLTRPSWSLD--ADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC--CCCCCceECCC--CCceEEEecCcceEEE
Confidence            4678899999999877554      243  45555542 222 333233  23778889999  5666655432      


Q ss_pred             ------CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004685          117 ------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (737)
Q Consensus       117 ------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw  175 (737)
                            +.+.+.++....           ...  .....|..+.|+|++..+.+..  ++.|.+-
T Consensus       424 ~~~~~~gql~~~~vd~ge-----------~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va  473 (591)
T PRK13616        424 IRDPATGQLARTPVDASA-----------VAS--RVPGPISELQLSRDGVRAAMII--GGKVYLA  473 (591)
T ss_pred             eccCCCceEEEEeccCch-----------hhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEE
Confidence                  122222222110           111  2355799999999654444433  4666663

>PHA03098 kelch-like protein; Provisional

Probab=90.52  E-value=17  Score=41.02  Aligned_cols=63  Identities=8%  Similarity=0.041  Sum_probs=33.1

Q ss_pred             CCCCEEEEEeCCC------cEEEEECCCCeEEEEEcccCccc-eEEEEEeeCCCCCEEEEEECC-----CcEEEEecCC
Q 004685           60 SKGSLLISGSDDT------HINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGD-----AEVRLFNLSR  126 (737)
Q Consensus        60 ~~g~~lasgs~dg------~V~vwd~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~d-----g~I~iwd~~~  126 (737)
                      .++.+++.|+.++      .+..||..+.+... +....... -.+++ .-+  +.+++.|+.+     ..+..||..+
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~-~~~--~~lyv~GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT-VFN--NRIYVIGGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE-EEC--CEEEEEeCCCCCEecceEEEEcCCC
Confidence            3556677776542      56788887765432 21111111 11222 223  5677888765     3466777664

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.51  E-value=3.3  Score=44.21  Aligned_cols=142  Identities=11%  Similarity=0.047  Sum_probs=91.7

Q ss_pred             cCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCC-------EEEEEeCCCcEEEEECCCCeE-EEEEccc
Q 004685           20 TDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-------LLISGSDDTHINVWSYSSRKL-LHSIETG   91 (737)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~-------~lasgs~dg~V~vwd~~~~~~-~~~~~~~   91 (737)
                      +..++..+  -++|..-+.+++.+.++.-|.. |+-+.+.|+.+       .-+.|-.|+.|.-||.+-... .....++
T Consensus       348 il~~~~~~--~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~  424 (644)
T KOG2395|consen  348 ILMDGGEQ--DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS  424 (644)
T ss_pred             EeeCCCCc--CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence            34444444  4556677999999999998877 88888988754       223466788999999863221 1111123


Q ss_pred             Cc----cceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe
Q 004685           92 HS----ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (737)
Q Consensus        92 h~----~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  167 (737)
                      |.    ....|.+-..+   .+++.|+.+|.|++||---..          .-..+.+...+|..|..+.++ ..++ |.
T Consensus       425 kqy~~k~nFsc~aTT~s---G~IvvgS~~GdIRLYdri~~~----------AKTAlPgLG~~I~hVdvtadG-Kwil-~T  489 (644)
T KOG2395|consen  425 KQYSTKNNFSCFATTES---GYIVVGSLKGDIRLYDRIGRR----------AKTALPGLGDAIKHVDVTADG-KWIL-AT  489 (644)
T ss_pred             cccccccccceeeecCC---ceEEEeecCCcEEeehhhhhh----------hhhcccccCCceeeEEeeccC-cEEE-Ee
Confidence            32    23444443333   589999999999999963211          123466778899999999854 5443 33


Q ss_pred             CCCcEEEEEcCC
Q 004685          168 EDGTLRQHDFRQ  179 (737)
Q Consensus       168 ~Dg~I~vwdl~~  179 (737)
                      .+..+.+-++.-
T Consensus       490 c~tyLlLi~t~~  501 (644)
T KOG2395|consen  490 CKTYLLLIDTLI  501 (644)
T ss_pred             cccEEEEEEEec
Confidence            356777777653

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=90.35  E-value=4.9  Score=38.38  Aligned_cols=127  Identities=10%  Similarity=0.067  Sum_probs=69.6

Q ss_pred             CceEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEE
Q 004685           51 GCVNAISWNSKGSLLISGSD---------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~---------dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~i  121 (737)
                      .+.+.-..+|+|++.+---.         .|.++.|-...  .+..+ ...-.--+.++|..+. ..+.+.-+.+-+|.-
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i-~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V~a  184 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELI-WNCVGISNGLAWDSDA-KKFYYIDSLNYEVDA  184 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccCC--Cceee-ehhccCCccccccccC-cEEEEEccCceEEee
Confidence            44556667889988442211         13334443221  11111 1112233578898775 556677788899999


Q ss_pred             EecCCCCCCCCCCCCCCCceeeccC-CCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          122 FNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                      ||.....+.......+-.+...+.. ....-.+++.. .+++.+++-..++|...|..+++.
T Consensus       185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~  245 (310)
T KOG4499|consen  185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKI  245 (310)
T ss_pred             eecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcE
Confidence            9976555544322221111111111 11123345555 567888888889999999999873

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.12  E-value=42  Score=38.90  Aligned_cols=89  Identities=17%  Similarity=0.080  Sum_probs=54.9

Q ss_pred             ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC--CCCCCCC-CCCCCc-------eeeccCCCceeEEEEecCC--C
Q 004685           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF--SGRGLDD-NAITPS-------ALYQCHTRRVKKLAVEVGN--P  160 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~-~~~~~~-------~~~~~h~~~v~~l~~~p~~--~  160 (737)
                      .-.|..|.++|+  |.+|+..|..|.+.+.=.+..  .+...+. ....+.       .........|..+.|+|.+  +
T Consensus        84 ~f~v~~i~~n~~--g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   84 LFEVHQISLNPT--GSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             ceeEEEEEECCC--CCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            356888999999  798888887665555433321  1100000 000100       0012345688999999953  4


Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCC
Q 004685          161 HVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       161 ~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      ..|+.-..|+++++||+.....+
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCCCC
Confidence            67778889999999999865544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=89.50  E-value=4.5  Score=43.98  Aligned_cols=121  Identities=16%  Similarity=0.118  Sum_probs=73.7

Q ss_pred             cCCceEEEEEcCCC----CEEEEEeCCCcEEEEECC-----CCeEEEEE--cccCccc--eEEEEEeeCCCCCEEEEEEC
Q 004685           49 HQGCVNAISWNSKG----SLLISGSDDTHINVWSYS-----SRKLLHSI--ETGHSAN--VFCTKFVPETSDELVVSGAG  115 (737)
Q Consensus        49 H~~~V~~l~~s~~g----~~lasgs~dg~V~vwd~~-----~~~~~~~~--~~~h~~~--V~~v~~sp~~~~~~l~sgs~  115 (737)
                      .=+.|.+++|.|-+    ..|....-.+.|.||.+.     +.+.+..-  .....-+  -..+.|+|.  ...|+.-..
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk--~~iL~VLT~  132 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK--KAILTVLTA  132 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC--CceEEEEec
Confidence            33579999999942    234444455799999885     22222111  0011112  246789999  577776666


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~  180 (737)
                      ...-.+++++....+         +..--...+.|.|.+|.+++.+++++.+..=.-++||-...
T Consensus       133 ~dvSV~~sV~~d~sr---------VkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSR---------VKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             CceeEeeeeeeCCce---------EEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            555566676643322         22222457789999999977666666666666778885543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.44  E-value=33  Score=36.72  Aligned_cols=43  Identities=19%  Similarity=0.002  Sum_probs=33.1

Q ss_pred             CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (737)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~  255 (737)
                      ......+.+++.+|. +++.|+...=|+|.++|+..+..++.+.
T Consensus       304 ~D~~R~~~~i~~sP~-~~laA~tDslGRV~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  304 PDSKREGESICLSPS-GRLAAVTDSLGRVLLIDVARGIVVRMWK  346 (415)
T ss_pred             ccCCceEEEEEECCC-CCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence            334456788999997 5788887777999999999887665553

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.34  E-value=28  Score=39.74  Aligned_cols=160  Identities=10%  Similarity=0.084  Sum_probs=96.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEE------EEc---------------ccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           62 GSLLISGSDDTHINVWSYSSRKLLH------SIE---------------TGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        62 g~~lasgs~dg~V~vwd~~~~~~~~------~~~---------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      .++|++|. .+.|.||+.+......      .+.               ......|+.|....-++...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            67787776 5699999986432211      110               0022346666655544457899999999999


Q ss_pred             EEecCCCC-----C-----CCCCCCCCCCceeeccCCCceeEEEEe--cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCC
Q 004685          121 LFNLSRFS-----G-----RGLDDNAITPSALYQCHTRRVKKLAVE--VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (737)
Q Consensus       121 iwd~~~~~-----~-----~~~~~~~~~~~~~~~~h~~~v~~l~~~--p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~  188 (737)
                      +|.+..--     .     ........+|...+. ....+++++++  . ..++||+++....|.+|-+........   
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~---  202 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFY---  202 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEeccccccc---
Confidence            99764200     0     000011223443333 44578999998  5 557888888888888887655321100   


Q ss_pred             CCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC--Cc---EEEEEeCCCcEEEEECC
Q 004685          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PH---LLLVGGSDAFARLYDRR  246 (737)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~---~l~t~s~Dg~i~iwd~~  246 (737)
                                         ......+..-|-+++|-++.  +.   .+++++-.|.+.+|++.
T Consensus       203 -------------------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  203 -------------------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             -------------------cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence                               00011134457788887654  22   78888999999999884

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.23  E-value=1.6  Score=29.51  Aligned_cols=31  Identities=19%  Similarity=0.370  Sum_probs=26.4

Q ss_pred             CceEEEEEcCC-C--CEEEEEeCCCcEEEEECCC
Q 004685           51 GCVNAISWNSK-G--SLLISGSDDTHINVWSYSS   81 (737)
Q Consensus        51 ~~V~~l~~s~~-g--~~lasgs~dg~V~vwd~~~   81 (737)
                      ++|.+++|||+ +  .+|+.+-.-+.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57899999984 4  5888888889999999985

It contains a characteristic DLL sequence motif.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=89.13  E-value=29  Score=35.63  Aligned_cols=225  Identities=12%  Similarity=0.004  Sum_probs=108.2

Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC
Q 004685           57 SWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  135 (737)
Q Consensus        57 ~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  135 (737)
                      .|.++.. ++.+--..+.|.-|+..+++.. .+  .+...+.++..-..  +..|+++.  .-+.+++........    
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~--~~p~~~~~~~~~d~--~g~Lv~~~--~g~~~~~~~~~~~~t----   99 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VF--PSPGGFSSGALIDA--GGRLIACE--HGVRLLDPDTGGKIT----   99 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EE--ECCCCcccceeecC--CCeEEEEc--cccEEEeccCCceeE----
Confidence            3667665 5556667788999998866432 23  13344455554444  35566553  335666664322100    


Q ss_pred             CCCCcee-ecc-CCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc-CCceeeccCCC
Q 004685          136 AITPSAL-YQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR-CGAKRSLADPP  212 (737)
Q Consensus       136 ~~~~~~~-~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  212 (737)
                         .+.. ..+ -....+.+...|++ .+. .+....    ++  .+...     .....  .++-+. .+....+.  .
T Consensus       100 ---~~~~~~~~~~~~r~ND~~v~pdG-~~w-fgt~~~----~~--~~~~~-----~~~~G--~lyr~~p~g~~~~l~--~  159 (307)
T COG3386         100 ---LLAEPEDGLPLNRPNDGVVDPDG-RIW-FGDMGY----FD--LGKSE-----ERPTG--SLYRVDPDGGVVRLL--D  159 (307)
T ss_pred             ---EeccccCCCCcCCCCceeEcCCC-CEE-EeCCCc----cc--cCccc-----cCCcc--eEEEEcCCCCEEEee--c
Confidence               0110 111 11344567777743 433 233322    22  11100     00011  122211 12222111  1


Q ss_pred             CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC--CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004685          213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM--LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (737)
Q Consensus       213 ~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~  290 (737)
                      .+...-+.++|||++..++++=+..+.|.-|++..  +.....           ..+   ... . ...+..-.++...+
T Consensus       160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~-----------~~~---~~~-~-~~~G~PDG~~vDad  223 (307)
T COG3386         160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR-----------RGF---VDF-D-EEPGLPDGMAVDAD  223 (307)
T ss_pred             CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc-----------ceE---EEc-c-CCCCCCCceEEeCC
Confidence            22345588999998544444445568888888763  111000           000   000 0 01112445788889


Q ss_pred             CCEEEEEeCCC-eEEEEEcCCCCcceeeeecCCCCeeeee
Q 004685          291 GEEVLLSYSGE-HVYLMDVNHAGGRAMRYTVGDASKIMSF  329 (737)
Q Consensus       291 g~~l~~g~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~  329 (737)
                      |.+.+++..+| .|.+|+.. ++...........+..++|
T Consensus       224 G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F  262 (307)
T COG3386         224 GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF  262 (307)
T ss_pred             CCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence            98776555554 99999988 5655444444355555555

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.11  E-value=7.2  Score=41.27  Aligned_cols=145  Identities=15%  Similarity=0.201  Sum_probs=69.4

Q ss_pred             ccccceeecccC---CceEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCeEEEEEcccCcc-
Q 004685           39 RLSQERELEGHQ---GCVNAISWNSKGSLLISGSD--------------------DTHINVWSYSSRKLLHSIETGHSA-   94 (737)
Q Consensus        39 ~~~~~~~l~~H~---~~V~~l~~s~~g~~lasgs~--------------------dg~V~vwd~~~~~~~~~~~~~h~~-   94 (737)
                      +++....+....   .--..+-|.|.-+.++|...                    -.++.+||+.+.+.++++.-+.++ 
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            345555554322   22345667777777777642                    357999999999999998544433 


Q ss_pred             ceEEEEEeeCCCCC-EEEEEECCCcEEEEecCCCCC-CCC---C-------CCCC-CCceeeccCCCceeEEEEecCCCc
Q 004685           95 NVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSG-RGL---D-------DNAI-TPSALYQCHTRRVKKLAVEVGNPH  161 (737)
Q Consensus        95 ~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~~~~~~-~~~---~-------~~~~-~~~~~~~~h~~~v~~l~~~p~~~~  161 (737)
                      ....|.|..+.... -|+.+.....|..|--..... ...   .       .... ..+..+..-..-|+.|.+|.++..
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            46788888763222 355555555665554321100 000   0       0000 001122222456899999997766


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCC
Q 004685          162 VVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       162 ~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      +.+++-.+|.|+.||+.....+
T Consensus       326 LYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-
T ss_pred             EEEEcccCCcEEEEecCCCCCC
Confidence            6677778999999999987654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.87  E-value=2.5  Score=49.20  Aligned_cols=115  Identities=7%  Similarity=-0.038  Sum_probs=76.7

Q ss_pred             ceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEE--------EE--EcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           52 CVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLL--------HS--IETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs--~dg~V~vwd~~~~~~~--------~~--~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      +|..+...+|+...++-.  .+-.|..||+++-..-        +.  ..........++.|+|.- ....+.+..|+.|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-cchhhhhccccch
Confidence            566667777877655443  3347888998753211        11  001223456789999985 5667888889999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~  178 (737)
                      ++..+......         +.. .......++++|+| .+..++.|-..|++.-|...
T Consensus       181 ~V~~~~~~~~~---------v~s-~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  181 RVKSTKQLAQN---------VTS-FPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS  228 (1405)
T ss_pred             hhhhhhhhhhh---------hcc-cCcccceeeEEecc-ccceeeEecCCCeEEEeecc
Confidence            99888753221         122 23566789999999 66888899999999988654

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=88.82  E-value=56  Score=38.46  Aligned_cols=236  Identities=11%  Similarity=0.095  Sum_probs=114.5

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEc-------ccCccceEEEEEeeCCCCCEEEEEECC---CcEEEEecCCCCC--CC
Q 004685           64 LLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSG--RG  131 (737)
Q Consensus        64 ~lasgs~dg~V~vwd~~~~~~~~~~~-------~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~I~iwd~~~~~~--~~  131 (737)
                      -++.-...|.|++|=.+.........       ......|+..++.+..+|..++.++.+   +.|++|.+.-.=+  .+
T Consensus        64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~  143 (753)
T PF11635_consen   64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ  143 (753)
T ss_pred             EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence            45556677899998763221111110       124566777777743336666555555   7888876542111  11


Q ss_pred             -CCCCCCCCceeec---------------------cCCCceeEEEEec------CCCcEEEEEeC----CCcEEEEEcCC
Q 004685          132 -LDDNAITPSALYQ---------------------CHTRRVKKLAVEV------GNPHVVWSASE----DGTLRQHDFRQ  179 (737)
Q Consensus       132 -~~~~~~~~~~~~~---------------------~h~~~v~~l~~~p------~~~~~l~s~s~----Dg~I~vwdl~~  179 (737)
                       .+. ...|...+.                     ..-..++.+.|-+      ..+.++++.+.    ...|.-|.++.
T Consensus       144 ~~d~-q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~  222 (753)
T PF11635_consen  144 QIDP-QKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE  222 (753)
T ss_pred             cCCC-CcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence             111 000110000                     0113566777765      12345544432    23688999987


Q ss_pred             CCCCCCCCCCCCc-cceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc-cCC
Q 004685          180 GSSCPPAGSSHQE-CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC-QKR  257 (737)
Q Consensus       180 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~-~~~  257 (737)
                      ............. .........................|.+++.... +..++....||.|.++|..+.+.+... ..+
T Consensus       223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~  301 (753)
T PF11635_consen  223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNG  301 (753)
T ss_pred             cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhccccccc
Confidence            6532100000000 0000000000000000111112345667766665 468999999999999999998876655 111


Q ss_pred             CCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEE
Q 004685          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY  304 (737)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~  304 (737)
                      ..+......+......   .....+..++|||++.-++.-..+|.+.
T Consensus       302 ~~~~~v~s~~~~Gf~f---p~~~~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  302 EPPNTVTSLFQAGFHF---PCIQPPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             CCcccccccccccccc---ccCCCCceEEECcccceEEEEecCCCce
Confidence            1111111111111000   0011355689999999999999988855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.31  E-value=5.7  Score=42.40  Aligned_cols=87  Identities=10%  Similarity=0.063  Sum_probs=58.8

Q ss_pred             ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEE-EEEeeCCC-----------
Q 004685           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC-TKFVPETS-----------  106 (737)
Q Consensus        39 ~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~-v~~sp~~~-----------  106 (737)
                      .......|......+.+|+.+|++.+.|+...=|.|.++|+.++..++-+ ++..+.=.. +.......           
T Consensus       296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW-KGYRdAqc~wi~~~~~~~~~~~~~~~~~~  374 (415)
T PF14655_consen  296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW-KGYRDAQCGWIEVPEEGDRDRSNSNSPKS  374 (415)
T ss_pred             ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh-ccCccceEEEEEeecccccccccccccCC
Confidence            44555667777788999999999999999888899999999998877666 444332111 11111100           


Q ss_pred             -----CCEEEEEECCCcEEEEecCC
Q 004685          107 -----DELVVSGAGDAEVRLFNLSR  126 (737)
Q Consensus       107 -----~~~l~sgs~dg~I~iwd~~~  126 (737)
                           --+++-+..-|.|.||.++.
T Consensus       375 ~~~~~l~LvIyaprRg~lEvW~~~~  399 (415)
T PF14655_consen  375 SSRFALFLVIYAPRRGILEVWSMRQ  399 (415)
T ss_pred             CCcceEEEEEEeccCCeEEEEecCC
Confidence                 01345566778888998875

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=87.78  E-value=0.61  Score=52.54  Aligned_cols=119  Identities=18%  Similarity=0.247  Sum_probs=70.1

Q ss_pred             ecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCeEEEEE----cccCccceEEEEEeeCCC-CCEEEEEECCC
Q 004685           46 LEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYS--SRKLLHSI----ETGHSANVFCTKFVPETS-DELVVSGAGDA  117 (737)
Q Consensus        46 l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~--~~~~~~~~----~~~h~~~V~~v~~sp~~~-~~~l~sgs~dg  117 (737)
                      ++|..+.|-.|.|.. +...++  ..=|.+.|||++  .|+....+    .......+.-|.|.|--- ..++..+-.++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            456677888888864 323333  333678999886  34332222    123344445555665320 35666777789


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEE-----------ecCCCcEEEEEeCCCcEEEEEcC
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV-----------EVGNPHVVWSASEDGTLRQHDFR  178 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----------~p~~~~~l~s~s~Dg~I~vwdl~  178 (737)
                      .|++..+....           ...+.+|...++.++|           +| ++..++.++.||.+++|.+.
T Consensus       206 ~i~lL~~~ra~-----------~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  206 EIRLLNINRAL-----------RSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             ceeEeeechHH-----------HHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeee
Confidence            99988776422           2344557766666554           56 55677777777777777653

>PHA02790 Kelch-like protein; Provisional

Probab=87.73  E-value=26  Score=38.78  Aligned_cols=105  Identities=10%  Similarity=-0.044  Sum_probs=50.5

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCeEEEEEcccCccce-EEEEEeeCCCCCEEEEEECC--CcEEEEecCCCCCCCC
Q 004685           61 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANV-FCTKFVPETSDELVVSGAGD--AEVRLFNLSRFSGRGL  132 (737)
Q Consensus        61 ~g~~lasgs~dg-----~V~vwd~~~~~~~~~~~~~h~~~V-~~v~~sp~~~~~~l~sgs~d--g~I~iwd~~~~~~~~~  132 (737)
                      ++.++++|+.++     .+..||..+.+....- .-..... .+++ .-+  +.+.+.|+.+  ..+..||.....    
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~-~m~~~r~~~~~v-~~~--~~iYviGG~~~~~sve~ydp~~n~----  342 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP-PMNSPRLYASGV-PAN--NKLYVVGGLPNPTSVERWFHGDAA----  342 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECC-CCCchhhcceEE-EEC--CEEEEECCcCCCCceEEEECCCCe----
Confidence            456677787543     4667887776533211 1111111 1222 233  5677777754  357777765321    


Q ss_pred             CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC---cEEEEEcCCC
Q 004685          133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG  180 (737)
Q Consensus       133 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg---~I~vwdl~~~  180 (737)
                          +..+..+.........+.+   ++.+.+.|+.++   .+..||.++.
T Consensus       343 ----W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        343 ----WVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             ----EEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCC
Confidence                1112222211111122222   557777777653   3556666554

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.94  E-value=1.6  Score=49.44  Aligned_cols=71  Identities=17%  Similarity=0.259  Sum_probs=46.1

Q ss_pred             CCCCEEEEecCCCcEEEEEcCc----cc-EEEEeecC---------------------CCceEEEEecC----CCCeEEE
Q 004685          637 QRGDYIASGSDDGRWFIWEKQT----GR-LIKMLLGD---------------------EAVVNCVQCHP----FDCVVAT  686 (737)
Q Consensus       637 ~d~~~l~sgs~D~~i~iWd~~t----~~-~~~~l~gH---------------------~~~V~~v~~sp----~~~~l~S  686 (737)
                      .+...++.+..||.+...+...    +. ....+...                     ...+.++++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667777888888888887774    22 11111111                     24677788887    6779999


Q ss_pred             EecCCcEEEEcCCCCCCcccc
Q 004685          687 SGIDNTIKIWTPSASVPSIVS  707 (737)
Q Consensus       687 ~~~Dg~i~lW~~~~~~~~~~~  707 (737)
                      .+.|+++|+||+.++.++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=86.82  E-value=35  Score=33.88  Aligned_cols=213  Identities=8%  Similarity=0.003  Sum_probs=107.7

Q ss_pred             cccceeecc-cCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC
Q 004685           40 LSQERELEG-HQGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (737)
Q Consensus        40 ~~~~~~l~~-H~~~V~~l~~s~~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d  116 (737)
                      .+.+.++.- ...-..++.|..+|.++-+.+.-|  .|+.+|+.+++......-....--..++...+   .++.--=.+
T Consensus        33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d---~l~qLTWk~  109 (264)
T PF05096_consen   33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD---KLYQLTWKE  109 (264)
T ss_dssp             EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT---EEEEEESSS
T ss_pred             eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC---EEEEEEecC
Confidence            455555542 223456788877888888887766  68999999998776553223333344555543   333333457


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004685          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (737)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~  196 (737)
                      +...+||..+..          .+..+. ....=..++.  ++..++ ...-...+.++|..+.+..           ..
T Consensus       110 ~~~f~yd~~tl~----------~~~~~~-y~~EGWGLt~--dg~~Li-~SDGS~~L~~~dP~~f~~~-----------~~  164 (264)
T PF05096_consen  110 GTGFVYDPNTLK----------KIGTFP-YPGEGWGLTS--DGKRLI-MSDGSSRLYFLDPETFKEV-----------RT  164 (264)
T ss_dssp             SEEEEEETTTTE----------EEEEEE--SSS--EEEE--CSSCEE-EE-SSSEEEEE-TTT-SEE-----------EE
T ss_pred             CeEEEEccccce----------EEEEEe-cCCcceEEEc--CCCEEE-EECCccceEEECCcccceE-----------EE
Confidence            889999998632          233332 3344566663  244455 4444567889987765532           11


Q ss_pred             EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccc-cc-C
Q 004685          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH-LS-E  274 (737)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~  274 (737)
                      +.         +.........++-+.+-.  +...|=.-....|...|..++.....+...        ...+.. .. .
T Consensus       165 i~---------V~~~g~pv~~LNELE~i~--G~IyANVW~td~I~~Idp~tG~V~~~iDls--------~L~~~~~~~~~  225 (264)
T PF05096_consen  165 IQ---------VTDNGRPVSNLNELEYIN--GKIYANVWQTDRIVRIDPETGKVVGWIDLS--------GLRPEVGRDKS  225 (264)
T ss_dssp             EE----------EETTEE---EEEEEEET--TEEEEEETTSSEEEEEETTT-BEEEEEE-H--------HHHHHHTSTTS
T ss_pred             EE---------EEECCEECCCcEeEEEEc--CEEEEEeCCCCeEEEEeCCCCeEEEEEEhh--------Hhhhccccccc
Confidence            10         100001123455566652  455555556666777777776644332100        000000 00 0


Q ss_pred             CCCcccceeEEEEcCCCCEEEEEeC
Q 004685          275 HGRSSLHLTHVTFSPNGEEVLLSYS  299 (737)
Q Consensus       275 ~~~~~~~i~~v~~sp~g~~l~~g~~  299 (737)
                      ......-.+.+|++|....|++.+.
T Consensus       226 ~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  226 RQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             T--TTS-EEEEEEETTTTEEEEEET
T ss_pred             ccccCCeeEeEeEeCCCCEEEEEeC
Confidence            0001223788999998776666654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=86.59  E-value=38  Score=34.08  Aligned_cols=161  Identities=17%  Similarity=0.189  Sum_probs=82.3

Q ss_pred             CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 004685          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (737)
Q Consensus       107 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~  186 (737)
                      ++.|+.|..+| |.+++......         +....  +...|..+...|.- +.|++-+ |+.+.++++..-......
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~---------~~~i~--~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~   72 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSK---------PTRIL--KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTS   72 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCcc---------ceeEe--ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccc
Confidence            68899999999 89999832111         11222  23349999998844 4554443 599999999876643211


Q ss_pred             CCCCCccceEEEeccCCceeeccCCCCCccceEEEE-EecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcc
Q 004685          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD-ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (737)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (737)
                      ........           ............+...+ -....+...++......|.+|..........        ...+
T Consensus        73 ~~~~~~~~-----------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~--------~~~k  133 (275)
T PF00780_consen   73 APLAFPKS-----------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS--------KLLK  133 (275)
T ss_pred             cccccccc-----------ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc--------ceeE
Confidence            00000000           00000001111222222 1111233444444456898888765311000        0001


Q ss_pred             ccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       266 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      .+   .+      ...+..++|.  +..|+.|..+ ...+.|+.++.
T Consensus       134 e~---~l------p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~  168 (275)
T PF00780_consen  134 EI---SL------PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGS  168 (275)
T ss_pred             EE---Ec------CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCC
Confidence            11   11      1148889998  5567777755 58888988754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=86.45  E-value=0.31  Score=54.75  Aligned_cols=64  Identities=14%  Similarity=0.128  Sum_probs=52.3

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEE-----------ecCCCCeEEEEecCCcEEEEcCC
Q 004685          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ-----------CHPFDCVVATSGIDNTIKIWTPS  699 (737)
Q Consensus       635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~-----------~sp~~~~l~S~~~Dg~i~lW~~~  699 (737)
                      |-+..-|+..|-.++.|++.+..+... ..+++|...++.++           .||||+.||.+..||.++.|.+-
T Consensus       191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  191 IAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             cccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            466778999999999999988877655 66778988777665           58999999999999998888753

>PHA03098 kelch-like protein; Provisional

Probab=86.32  E-value=27  Score=39.25  Aligned_cols=63  Identities=14%  Similarity=0.164  Sum_probs=32.6

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC------CcEEEEecCC
Q 004685           61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSR  126 (737)
Q Consensus        61 ~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~iwd~~~  126 (737)
                      ++.+++.|+.+     ..+..||..+.+-...-...+...-.+++. -+  +.+++.|+.+      ..+..||+.+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~--~~iYv~GG~~~~~~~~~~v~~yd~~t  415 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VN--NLIYVIGGISKNDELLKTVECFSLNT  415 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-EC--CEEEEECCcCCCCcccceEEEEeCCC
Confidence            56777778765     346778877654322110001111112222 23  4677777732      3577888765

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.64  E-value=6.2  Score=42.19  Aligned_cols=99  Identities=10%  Similarity=0.033  Sum_probs=58.4

Q ss_pred             CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC--
Q 004685          214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--  291 (737)
Q Consensus       214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g--  291 (737)
                      ....|..+..++. |..++..+.+|.+.++=.+...+-..+....+... .+++......-.......+..++|+|+.  
T Consensus       102 V~feV~~vl~s~~-GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~-CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~  179 (741)
T KOG4460|consen  102 VLFEVYQVLLSPT-GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVN-CRTTPVAERFFTSSTSLTLKQAAWHPSSIL  179 (741)
T ss_pred             ceEEEEEEEecCC-CceEEEecCCeeEEEEchhhcCccceecCCCceEE-EEeecccceeeccCCceeeeeccccCCccC
Confidence            3467788888997 57888888899776654332222222211111111 1111111110011122257889999975  


Q ss_pred             -CEEEEEeCCCeEEEEEcCCCCcc
Q 004685          292 -EEVLLSYSGEHVYLMDVNHAGGR  314 (737)
Q Consensus       292 -~~l~~g~~dg~v~iwd~~~~~~~  314 (737)
                       ..|+.-+.|+.+++||+......
T Consensus       180 D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  180 DPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             CceEEEEecCcEEEEEecCCcchh
Confidence             77899999999999999986654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=84.15  E-value=60  Score=34.21  Aligned_cols=114  Identities=8%  Similarity=-0.047  Sum_probs=60.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC-----------------
Q 004685           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-----------------  117 (737)
Q Consensus        55 ~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-----------------  117 (737)
                      ...++|+.+.|+-......|+--|+.+++....+ ......+-...|..+.++.+++..-...                 
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~  163 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE  163 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence            4667788887766655678888999998765544 4566666667787655455554432111                 


Q ss_pred             -----cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC---CC-cEEEEEcCCC
Q 004685          118 -----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE---DG-TLRQHDFRQG  180 (737)
Q Consensus       118 -----~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~---Dg-~I~vwdl~~~  180 (737)
                           .|.--|+.+++           ...+..-...+..+.|+|.++.+|+-|-.   +. .-++|-+++.
T Consensus       164 a~p~~~i~~idl~tG~-----------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d  224 (386)
T PF14583_consen  164 ARPHCRIFTIDLKTGE-----------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD  224 (386)
T ss_dssp             C---EEEEEEETTT-------------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred             hCCCceEEEEECCCCc-----------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence                 11222222211           23333345677889999988888876643   22 1355665543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=84.00  E-value=78  Score=35.46  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=26.7

Q ss_pred             CCCEEEEecCCCcEEEEEcCcccEEEEeecC
Q 004685          638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGD  668 (737)
Q Consensus       638 d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH  668 (737)
                      .+.+++.|+.||.++.+|.+||+++-.++-.
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            5667888999999999999999999877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13616 lipoprotein LpqB; Provisional

Probab=83.07  E-value=40  Score=38.24  Aligned_cols=115  Identities=9%  Similarity=0.007  Sum_probs=62.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           52 CVNAISWNSKGSLLISGSDD------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~d------------g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      ..+.-.|+|+|..|++....            +.+.+.+++.+....    .....|..++|+|+  |..++... ++.|
T Consensus       398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpD--G~RiA~i~-~g~v  470 (591)
T PRK13616        398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRD--GVRAAMII-GGKV  470 (591)
T ss_pred             CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCC--CCEEEEEE-CCEE
Confidence            36778899999887776532            223333333332211    22457999999999  67776655 4777


Q ss_pred             EEEecCCC-CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 004685          120 RLFNLSRF-SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (737)
Q Consensus       120 ~iwd~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~  178 (737)
                      .+=-+... .+... .  ..+..........+.++.|.. ++.++ .+..++...+|.+.
T Consensus       471 ~Va~Vvr~~~G~~~-l--~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        471 YLAVVEQTEDGQYA-L--TNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             EEEEEEeCCCCcee-e--cccEEeecccCCccccceEec-CCEEE-EEecCCCCceEEEe
Confidence            77433321 11100 0  011111222334468899998 44544 55555544555544

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.77  E-value=5  Score=26.43  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=22.9

Q ss_pred             EEeecCCCceEEEEecCCCC-eEEEEecC--CcEEEE
Q 004685          663 KMLLGDEAVVNCVQCHPFDC-VVATSGID--NTIKIW  696 (737)
Q Consensus       663 ~~l~gH~~~V~~v~~sp~~~-~l~S~~~D--g~i~lW  696 (737)
                      ..+.-..+.-...+|||||+ ++.++..+  |.-.||
T Consensus         2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34555566788899999998 55555566  777776

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.75  E-value=4.5  Score=43.86  Aligned_cols=68  Identities=10%  Similarity=0.042  Sum_probs=46.0

Q ss_pred             ccCCCCEEEEe-----cCCCcEEEEEcCcccEEEEe-ecCCCceEEEEecCCCCeEEEEecCC-----------cEEEEc
Q 004685          635 LGQRGDYIASG-----SDDGRWFIWEKQTGRLIKML-LGDEAVVNCVQCHPFDCVVATSGIDN-----------TIKIWT  697 (737)
Q Consensus       635 ~s~d~~~l~sg-----s~D~~i~iWd~~t~~~~~~l-~gH~~~V~~v~~sp~~~~l~S~~~Dg-----------~i~lW~  697 (737)
                      +||||++||-+     ++...++|.|+.+|+.+..- .+ .. -..+.|.+|++.|+-...|.           .|+.|.
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~  208 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK  208 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence            79999998753     44467999999999877532 32 11 22399999988554444332           378888


Q ss_pred             CCCCCCc
Q 004685          698 PSASVPS  704 (737)
Q Consensus       698 ~~~~~~~  704 (737)
                      +.+...-
T Consensus       209 ~gt~~~~  215 (414)
T PF02897_consen  209 LGTPQSE  215 (414)
T ss_dssp             TTS-GGG
T ss_pred             CCCChHh
Confidence            8776543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=82.23  E-value=8.5  Score=37.39  Aligned_cols=65  Identities=14%  Similarity=0.233  Sum_probs=43.8

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeEEEEE------cc-------cCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           58 WNSKGSLLISGSDDTHINVWSYSSRKLLHSI------ET-------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        58 ~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~------~~-------~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      +..++.+|++-..+|.+++||+.+++.+..-      ..       .....|..+.++.+  |.-+++-+ +|..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~--G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN--GVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC--CCEEEEEe-CCCEEEecc
Confidence            4467889999999999999999998765332      11       23455666667655  55555543 466677766


Q ss_pred             C
Q 004685          125 S  125 (737)
Q Consensus       125 ~  125 (737)
                      .
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            5

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=81.73  E-value=66  Score=32.94  Aligned_cols=159  Identities=14%  Similarity=0.150  Sum_probs=73.2

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      -.+.+..+..+++|.+++++..-.-+.-||--...-. .+...-...|..+.|.|+  +.+.+. ...|.|+.=+.....
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~-~~~r~~~~riq~~gf~~~--~~lw~~-~~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ-PHNRNSSRRIQSMGFSPD--GNLWML-ARGGQIQFSDDPDDG  218 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E-EEE--SSS-EEEEEE-TT--S-EEEE-ETTTEEEEEE-TTEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccce-EEccCccceehhceecCC--CCEEEE-eCCcEEEEccCCCCc
Confidence            3467888888999998888866555567775432222 221345688999999999  555554 488888887622100


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                      ..-     .++........-.+..++|.+ ...+.++|+ .|++. .....++.=                      ...
T Consensus       219 ~~w-----~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l~-~S~DgGktW----------------------~~~  268 (302)
T PF14870_consen  219 ETW-----SEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTLL-VSTDGGKTW----------------------QKD  268 (302)
T ss_dssp             EEE--------B-TTSS--S-EEEEEESS-SS-EEEEES-TT-EE-EESSTTSS-----------------------EE-
T ss_pred             ccc-----ccccCCcccCceeeEEEEecC-CCCEEEEeC-CccEE-EeCCCCccc----------------------eEC
Confidence            000     000111112233478899987 445665554 45443 333333310                      001


Q ss_pred             cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004685          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (737)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw  243 (737)
                      ........-++.+.|.+. .+-++. +.+|.|.-|
T Consensus       269 ~~~~~~~~n~~~i~f~~~-~~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  269 RVGENVPSNLYRIVFVNP-DKGFVL-GQDGVLLRY  301 (302)
T ss_dssp             GGGTTSSS---EEEEEET-TEEEEE--STTEEEEE
T ss_pred             ccccCCCCceEEEEEcCC-CceEEE-CCCcEEEEe
Confidence            111112345678888764 244444 467776544

>PHA02790 Kelch-like protein; Provisional

Probab=81.39  E-value=58  Score=36.02  Aligned_cols=63  Identities=10%  Similarity=0.118  Sum_probs=33.2

Q ss_pred             CCCCEEEEEeCC--CcEEEEECCCCeEEEEEcccCccceEE-EEEeeCCCCCEEEEEECCC---cEEEEecCC
Q 004685           60 SKGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFC-TKFVPETSDELVVSGAGDA---EVRLFNLSR  126 (737)
Q Consensus        60 ~~g~~lasgs~d--g~V~vwd~~~~~~~~~~~~~h~~~V~~-v~~sp~~~~~~l~sgs~dg---~I~iwd~~~  126 (737)
                      -++.+.+.|+.+  ..+..||..+.+... + ..-..+... ....-+  +.+.+.|+.++   .+..||...
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~-~-~~l~~~r~~~~~~~~~--g~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVN-M-PSLLKPRCNPAVASIN--NVIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEE-C-CCCCCCCcccEEEEEC--CEEEEecCcCCCCccEEEEeCCC
Confidence            356777777754  357778876654322 1 111111111 112223  57778877653   466777764

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=80.85  E-value=0.32  Score=51.02  Aligned_cols=149  Identities=9%  Similarity=0.085  Sum_probs=95.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~  131 (737)
                      ......|-|.+.-++.++.+..|..||-. ++.....  ..+.....++|.-+. +..++.+-..+.+.+||+.....+.
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~--n~tg~aldm~wDkeg-dvlavlAek~~piylwd~n~eytqq  111 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL--NPTGKALDMAWDKEG-DVLAVLAEKTGPIYLWDVNSEYTQQ  111 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhhhh-cceeccc--CCchhHhhhhhcccc-chhhhhhhcCCCeeechhhhhhHHH
Confidence            33456788877768888888899999954 4444333  245667788888863 3345666678999999998633221


Q ss_pred             CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004685          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (737)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (737)
                              +..--.|+...  +.|++ +...++.+...|.+.+++....+.+.                         ..
T Consensus       112 --------LE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~ii-------------------------v~  155 (615)
T KOG2247|consen  112 --------LESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRII-------------------------VM  155 (615)
T ss_pred             --------HhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhhh-------------------------hh
Confidence                    11111122222  78888 55677788888999999988765331                         11


Q ss_pred             CCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (737)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i  242 (737)
                      ..|...++++++.+.  ++.+.++.|..+.+
T Consensus       156 Gkh~RRgtq~av~lE--d~vil~dcd~~L~v  184 (615)
T KOG2247|consen  156 GKHQRRGTQIAVTLE--DYVILCDCDNTLSV  184 (615)
T ss_pred             cccccceeEEEeccc--ceeeecCcHHHHHH
Confidence            125567788888885  36666666655433

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.40  E-value=11  Score=39.76  Aligned_cols=118  Identities=11%  Similarity=0.196  Sum_probs=76.5

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL----HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~----~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      ..++|.+|.||+|.+.||.--.|++|.+++....+..    .+. +..+..|....|+..   .-++.....| +-+|..
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF~W~~s---~e~A~i~~~G-~e~y~v  139 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGFCWTSS---TEIAFITDQG-IEFYQV  139 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh-ccCcceeEEEEEecC---eeEEEEecCC-eEEEEE
Confidence            4579999999999999999999999999998443322    222 334556889999886   3344444333 666665


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCC
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQG  180 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~  180 (737)
                      ....         ..++..+.|...|.-..|.++..-.|.+.+ ..+++.-+-++++
T Consensus       140 ~pek---------rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  140 LPEK---------RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             chhh---------hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            5321         125566778888888888885433343433 4445555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	737
2gnq_A	336	Structure Of Wdr5 Length = 336		9e-11
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-07
2h9l_A	329	Wdr5delta23 Length = 329		1e-10
2h9l_A	329	Wdr5delta23 Length = 329		6e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-10
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		9e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-10
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		9e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		4e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		8e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		8e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		8e-04

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 82  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 140
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 141 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 189
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 190 --SSSYDGLCRIWDTASG 205

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 252 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 310
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 311 CHPTENIIASAALENDKTIKLW 332

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 80  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 138
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 139 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 187
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 188 --SSSYDGLCRIWDTASG 203

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 250 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 309 CHPTENIIASAALENDKTIKLW 330

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 54  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 112
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 113 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 161
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 162 --SSSYDGLCRIWDTASG 177

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 224 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 282
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 283 CHPTENIIASAALENDKTIKLW 304

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 172 --SSSYDGLCRIWDTASG 187

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 63  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 121
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 122 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 170
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 171 --SSSYDGLCRIWDTASG 186

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 233 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 291
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 292 CHPTENIIASAALENDKTIKLW 313

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 59  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 117
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 118 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 166
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 167 --SSSYDGLCRIWDTASG 182

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 229 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 287
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 288 CHPTENIIASAALENDKTIKLW 309

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 58  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 116
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 117 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 165
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 166 --SSSYDGLCRIWDTASG 181

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 228 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 58  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 116
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 117 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 165
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 166 --SSSYDGLCRIWDTASG 181

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 228 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 172 --SSSYDGLCRIWDTASG 187

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 57  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 115
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 116 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 164
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 165 --SSSYDGLCRIWDTASG 180

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 227 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 285
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 286 CHPTENIIASAALENDKTIKLW 307

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 75  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 133
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 134 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 182
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 183 --SSSYDGLCRIWDTASG 198

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 245 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 303
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 304 CHPTENIIASAALENDKTIKLW 325

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 172 --SSSYDGLCRIWDTASG 187

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 169 --SSSYDGLCRIWDTASG 184

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 677 CHPFDCVVATSGIDN--TIKI 695
           CHP + ++A++ ++N  TIK+
Sbjct: 290 CHPTENIIASAALENDKTIKL 310

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 169 --SSSYDGLCRIWDTASG 184

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK++
Sbjct: 290 CHPTENIIASAALENDKTIKLY 311

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 169 --SSSYDGLCRIWDTASG 184

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
           P+++  L+VSG+ D  VR++++
Sbjct: 120 PQSN--LIVSGSFDESVRIWDV 139

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
           P+++  L+VSG+ D  VR++++
Sbjct: 120 PQSN--LIVSGSFDESVRIWDV 139

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 676
           + Y GH N    I  A+F    G +I SGS+D   +IW  QT  +++ L G   VV    
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 677 CHPFDCVVATSGIDN--TIKIW 696
           CHP + ++A++ ++N  TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 40  LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 99
           ++  R L GH+  VN + ++ K   ++S S D  I VW+ S+ + + ++  GH   + C 
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACL 302
Query: 100 KFVPETSDELVVSGAGDAEVRLFNL 124
           ++     D LVVSG+ D  +RL+++
Sbjct: 303 QY----RDRLVVSGSSDNTIRLWDI 323

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
           + L GH   V  ++++  G  + S SDD  + +W+ +  +LL ++ TGHS++V+   F P
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 436
Query: 104 ETSDELVVSGAGDAEVRLFN 123
           +  D+ + S + D  V+L+N
Sbjct: 437 D--DQTIASASDDKTVKLWN 454

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 698
           G  IAS SDD    +W +  G+L++ L G  + VN V   P    +A++  D T+K+W  
Sbjct: 233 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291
Query: 699 SASV-------PSIVSGGAAGPDTADVLEAMESNQRKL-SRNREH 735
           +  +        S V G A  PD   +  A +    KL +RN +H
Sbjct: 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
           R L+GH G V ++ W  + + ++S S D  + VW+  + +  H+I+  H   V    F P
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAP 118
Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
             + + V  G  D+   +FNLS  + R   D  +  S +   H                 
Sbjct: 119 --NGQSVACGGLDSACSIFNLSSQADR---DGNMPVSRVLTGHKGY-------------- 159
Query: 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD---PPKQTLSLKS 220
             AS    +   + R        GS  Q C  +L D+  G + S+     P   T  + S
Sbjct: 160 --ASSCQYVPDQETRL-----ITGSGDQTC--VLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 221 CDISSTRPHLLLVGGSDAFARLYDRRM 247
             I+S   ++ + G  D   RL+D R+
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRI 237

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 26/180 (14%)
Query: 17  TRHTDTRPDVNHSLQMHSSLVRRLSQEREL-----------------EGHQGCVNAISWN 59
           T HT    DV+  L +H SL   ++ +++L                 + H   VN +S+N
Sbjct: 224 TGHTAVVEDVSWHL-LHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 60  SKGSLLI-SGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117
                ++ +GS D  + +W   + KL LHS E+ H   +F  ++ P     L  SG  D 
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGT-DR 340
Query: 118 EVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
            + +++LS+     S    +D       ++  HT ++   +     P V+ S SED  ++
Sbjct: 341 RLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
Query: 42  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
           Q   L+GH   V  ++W S G  L SG +D  + +W   S  +    +T H+A V    +
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAW 267
Query: 102 VPETSDELVVSGAG-DAEVRLFNLSRFSG-RGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
            P  S+ L   G   D ++  +N +  +    +D  +   S ++  H++ +        N
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN 327
Query: 160 PHVVWSASEDGTLRQHDF 177
              +WS S  G  +Q D 
Sbjct: 328 NLSIWSYSSSGLTKQVDI 345

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 53  VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS 112
           + ++ ++  G  L +G++D  I +W   +RK++  ++ GH  +++   + P  S + +VS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFP--SGDKLVS 182
Query: 113 GAGDAEVRLFNL 124
           G+GD  VR+++L
Sbjct: 183 GSGDRTVRIWDL 194

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 40   LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 87
            LS   EL+GH GCV   +++  G LL +G D+  I +W+ S  +LLHS
Sbjct: 1124 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 40   LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 87
            LS   EL+GH GCV   +++  G LL +G D+  I +W+ S  +LLHS
Sbjct: 1117 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 45/180 (25%)
Query: 44  RELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
           R L GH G V    W+S  + +++ISGS D  + VW+  + + +H++  GH++ V C   
Sbjct: 153 RTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHL 207
Query: 102 VPETSDELVVSGAGDAEVRLFNLS------------------RFSGRGLDDNAI------ 137
                ++ VVSG+ DA +R++++                   ++ GR +   A       
Sbjct: 208 ----HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV 263
Query: 138 ----TPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191
               T + L+  Q HT RV  L  +    HVV S S D ++R  D   G +C    + HQ
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQFD--GIHVV-SGSLDTSIRVWDVETG-NCIHTLTGHQ 319

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
           +  R   GH   V +++++S    ++SGS D  I +W+          +  HS  V C +
Sbjct: 96  TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 155
Query: 101 FVPETSDELVVSGAGDAEVRLFNLS 125
           F P +S+ ++VS   D  V+++NL+
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWNLA 180

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
           +  R   GH   V +++++S    ++SGS D  I +W+          +  HS  V C +
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178
Query: 101 FVPETSDELVVSGAGDAEVRLFNLS 125
           F P +S+ ++VS   D  V+++NL+
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWNLA 203

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 17  TRHTDTRPDVNHSLQMHSSLVRRLSQEREL-----------------EGHQGCVNAISWN 59
           T HT    DV   L +H SL   ++ +++L                 + H   VN +S+N
Sbjct: 232 TGHTAVVEDVAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 60  SKGSLLI-SGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117
                ++ +GS D  + +W   + KL LHS E+ H   +F  ++ P     L  SG  D 
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGT-DR 348
Query: 118 EVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
            + +++LS+     S    +D       ++  HT ++   +     P ++ S SED  ++
Sbjct: 349 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 408

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 17  TRHTDTRPDVNHSLQMHSSLVRRLSQEREL-----------------EGHQGCVNAISWN 59
           T HT    DV   L +H SL   ++ +++L                 + H   VN +S+N
Sbjct: 230 TGHTAVVEDVAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
Query: 60  SKGSLLI-SGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117
                ++ +GS D  + +W   + KL LHS E+ H   +F  ++ P     L  SG  D 
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGT-DR 346
Query: 118 EVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
            + +++LS+     S    +D       ++  HT ++   +     P ++ S SED  ++
Sbjct: 347 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 406

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 46  LEGHQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 103
           ++ H   VN +S+N     ++ +GS D  + +W   + KL LHS E+ H   +F  ++ P
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSP 331
Query: 104 ETSDELVVSGAGDAEVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
                L  SG  D  + +++LS+     S    +D       ++  HT ++   +     
Sbjct: 332 HNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390
Query: 160 PHVVWSASEDGTLR 173
           P ++ S SED  ++
Sbjct: 391 PWIICSVSEDNIMQ 404

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	737
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.84
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.82
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.82
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.8
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.78
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.75
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.74
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.74
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.72
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.72
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.7
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.7
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.69
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.64
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.64
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.61
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.61
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.59
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.57
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.52
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.5
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.48
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.48
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.46
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.45
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.45
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.45
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.41
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.41
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.4
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.36
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.36
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.36
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.34
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.34
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.3
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.3
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.28
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.26
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.26
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.24
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.19
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.18
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.15
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.14
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.13
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.13
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.12
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.12
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.11
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.1
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.06
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.06
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.06
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.03
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.0
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.99
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.99
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.96
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.94
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.93
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.92
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.92
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.89
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.84
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.82
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.82
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.81
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.8
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.78
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.75
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.7
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.66
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.64
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.62
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.6
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.58
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.44
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.43
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.43
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.41
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.4
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.35
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.33
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.22
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.16
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.16
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.11
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.08
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.03
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.02
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.01
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.99
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.93
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.89
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.86
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.86
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.74
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.73
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.73
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.68
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.62
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.59
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.59
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.58
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.54
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.53
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.5
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.48
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.41
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.4
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.38
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.38
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.37
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.36
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.28
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.27
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.25
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.24
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.23
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.2
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.2
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.15
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.09
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.99
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.97
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.9
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.9
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.79
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.78
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.71
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.65
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.57
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.49
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.45
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.34
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.17
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.14
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.08
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.08
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.03
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.01
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.98
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.89
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.84
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.69
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.63
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.97
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	94.87
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.81
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.81
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.65
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.58
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.32
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.24
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.07
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.18
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.11
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	92.7
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.66
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.36
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.3
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.02
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	91.11
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	90.96
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	90.68
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	90.54
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	89.09
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	88.85
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	88.2
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	87.74
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	87.67
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	86.97
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	84.51
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	81.37
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	80.78
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	80.39

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-42  Score=376.02  Aligned_cols=210  Identities=18%  Similarity=0.299  Sum_probs=180.9

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      .....+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++....+ .+|...|.+++|+|+  +.+|++|+.|++|+
T Consensus        99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~--~~~l~sgs~D~~i~  175 (410)
T 1vyh_C           99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCSADMTIK  175 (410)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCCC
T ss_pred             CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCC--CCEEEEEeCCCeEE
Confidence            345678899999999999999999999999999999999999999888 799999999999999  79999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      +||+...          +++..+.+|...|.+++|+| ++.+|++|+.|++|++||++++..+                 
T Consensus       176 iwd~~~~----------~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~-----------------  227 (410)
T 1vyh_C          176 LWDFQGF----------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCV-----------------  227 (410)
T ss_dssp             EEETTSS----------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE-----------------
T ss_pred             EEeCCCC----------ceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEE-----------------
Confidence            9999753          33677889999999999999 6689999999999999999887521                 


Q ss_pred             cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (737)
                              ..+..|...+.++.|+|+ +.+|++|+.|+.|++||+++......+                    .+|.. 
T Consensus       228 --------~~~~~h~~~v~~~~~~~~-g~~l~s~s~D~~v~vwd~~~~~~~~~~--------------------~~h~~-  277 (410)
T 1vyh_C          228 --------KTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAEL--------------------REHRH-  277 (410)
T ss_dssp             --------EEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCSS-
T ss_pred             --------EEEeCCCccEEEEEECCC-CCEEEEEcCCCeEEEEECCCCceeeEe--------------------cCCCc-
Confidence                    222356778999999997 689999999999999999876544332                    12333 


Q ss_pred             ceeEEEEcCC--------------------CCEEEEEeCCCeEEEEEcCCC
Q 004685          281 HLTHVTFSPN--------------------GEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       281 ~i~~v~~sp~--------------------g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .|.+++|+|+                    |.+|++|+.|+.|++||+.++
T Consensus       278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~  328 (410)
T 1vyh_C          278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  328 (410)
T ss_dssp             CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            5999999996                    678999999999999998763

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-41  Score=352.71  Aligned_cols=215  Identities=14%  Similarity=0.246  Sum_probs=183.1

Q ss_pred             ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc
Q 004685           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (737)
Q Consensus        39 ~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~  118 (737)
                      +++..++|++|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+ ..|..+|.+++|+|+  +++|++|+.|+.
T Consensus         2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~s~s~d~~   78 (304)
T 2ynn_A            2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFR   78 (304)
T ss_dssp             CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred             cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCC--CCEEEEECCCCE
Confidence            35667889999999999999999999999999999999999999999988 789999999999999  799999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (737)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~  198 (737)
                      |++||+....          .+..+.+|...|.+++|+| ++.+|++|+.|++|++||++++...               
T Consensus        79 i~vwd~~~~~----------~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~---------------  132 (304)
T 2ynn_A           79 IRVFNYNTGE----------KVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWAL---------------  132 (304)
T ss_dssp             EEEEETTTCC----------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEE---------------
T ss_pred             EEEEECCCCc----------EEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcch---------------
Confidence            9999998632          3677889999999999999 5689999999999999999876411               


Q ss_pred             eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                               ......|...|.+++|+|.++.+|++|+.|+.|++||++.......+.                   . +.
T Consensus       133 ---------~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-------------------~-~~  183 (304)
T 2ynn_A          133 ---------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------------------T-GQ  183 (304)
T ss_dssp             ---------EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-------------------C-CC
T ss_pred             ---------hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-------------------c-CC
Confidence                     122346778899999999767899999999999999998765432221                   1 12


Q ss_pred             ccceeEEEEcC--CCCEEEEEeCCCeEEEEEcCCC
Q 004685          279 SLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       279 ~~~i~~v~~sp--~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ...+..++|+|  ++.+|++|+.|+.|++||+.++
T Consensus       184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~  218 (304)
T 2ynn_A          184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (304)
T ss_dssp             TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT
T ss_pred             cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC
Confidence            22588899987  7889999999999999998763

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.3e-42  Score=391.42  Aligned_cols=232  Identities=16%  Similarity=0.168  Sum_probs=187.8

Q ss_pred             ccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeC
Q 004685           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPE  104 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~  104 (737)
                      .+.+++|+  ....+...+|.+|...|++++|+|+|++||+|+.|++|+|||+.+++  ....+ .+|..+|.+++|+|+
T Consensus        38 ~~~v~l~~--~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~-~~~~~~v~~v~fs~d  114 (611)
T 1nr0_A           38 GTSVYTVP--VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSE  114 (611)
T ss_dssp             TTEEEEEE--TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTT
T ss_pred             CCEEEEec--CCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee-cccCCceEEEEECCC
Confidence            45788888  45667888999999999999999999999999999999999997543  34456 789999999999999


Q ss_pred             CCCCEEEEEECC----CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004685          105 TSDELVVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (737)
Q Consensus       105 ~~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~  180 (737)
                        +.+|++++.+    +.|++||...            ....+.+|...|++++|+|+++..|++|+.|++|++||....
T Consensus       115 --g~~l~~~~~~~~~~~~v~~wd~~~------------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~  180 (611)
T 1nr0_A          115 --SKRIAAVGEGRERFGHVFLFDTGT------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF  180 (611)
T ss_dssp             --SCEEEEEECCSSCSEEEEETTTCC------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred             --CCEEEEEECCCCceeEEEEeeCCC------------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence              7899988865    4788888542            245678999999999999966567999999999999997664


Q ss_pred             CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004685          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (737)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (737)
                      +.                         +....+|...|.+++|+|+ +++|++++.|+.|++||+.+++.+..+...   
T Consensus       181 ~~-------------------------~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~~---  231 (611)
T 1nr0_A          181 KF-------------------------KSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDD---  231 (611)
T ss_dssp             EE-------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCT---
T ss_pred             eE-------------------------eeeeccccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeeccc---
Confidence            31                         2233468889999999997 689999999999999999887654433110   


Q ss_pred             CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcce
Q 004685          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  315 (737)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~  315 (737)
                                .+...+|.. .|.+++|+|+|++|++++.|++|++||+.+++...
T Consensus       232 ----------~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~  275 (611)
T 1nr0_A          232 ----------SLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK  275 (611)
T ss_dssp             ----------TSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ----------cccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence                      001113444 69999999999999999999999999999865433

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.7e-41  Score=358.05  Aligned_cols=214  Identities=23%  Similarity=0.339  Sum_probs=182.8

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      .+...+|++|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+ ..|...|.+++|+|+  +.+|++|+.|+.|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~s~~~d~~v  121 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GNYVACGGLDNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTT--SSEEEEEETTCEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECCC--CCEEEEEeCCCeE
Confidence            4566789999999999999999999999999999999999999999888 789999999999999  7999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      ++|++......      ......+.+|...|.++.|++ ++ .+++++.|++|++||+++++.                 
T Consensus       122 ~iw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~-----------------  176 (340)
T 1got_B          122 SIYNLKTREGN------VRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQ-----------------  176 (340)
T ss_dssp             EEEETTTCSBS------CEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEE-----------------
T ss_pred             EEEECccCCCc------ceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcE-----------------
Confidence            99999864321      123456788999999999998 43 478999999999999987652                 


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                              +.....|...|.+++|+|+ +.+|++|+.|+.|++||++++..+..+                    .+|..
T Consensus       177 --------~~~~~~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~~~~~--------------------~~h~~  227 (340)
T 1got_B          177 --------TTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTF--------------------TGHES  227 (340)
T ss_dssp             --------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEE--------------------CCCSS
T ss_pred             --------EEEEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCeeEEEE--------------------cCCcC
Confidence                    2223467788999999997 589999999999999999987644333                    22333


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                       .|++++|+|++.+|++|+.||.|++||+.++
T Consensus       228 -~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          228 -DINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             -CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             -CEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence             5999999999999999999999999998874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.9e-42  Score=366.95  Aligned_cols=228  Identities=24%  Similarity=0.370  Sum_probs=188.1

Q ss_pred             cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (737)
Q Consensus        38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  117 (737)
                      ......++|+||.+.|++++|+|++++|++|+.|++|+|||+.+++....+ ..|...|.+++|+|+  +.+|++|+.|+
T Consensus        54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~--g~~las~~~d~  130 (380)
T 3iz6_a           54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPN--GQSVACGGLDS  130 (380)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTT--SSEEEECCSSS
T ss_pred             ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECCC--CCEEEEeeCCC
Confidence            345677889999999999999999999999999999999999999999988 789999999999999  79999999999


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      .|++|++......   .........+.+|...|.++.|.|.++..|++|+.|++|++||+++++.+            ..
T Consensus       131 ~v~iw~~~~~~~~---~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~------------~~  195 (380)
T 3iz6_a          131 ACSIFNLSSQADR---DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI------------SI  195 (380)
T ss_dssp             CCEEEECCCCSSC---CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE------------EE
T ss_pred             cEEEEECCCCccc---cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE------------EE
Confidence            9999999753211   11123356778999999999999977778999999999999999987632            00


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCCCCccccccccccCCC
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (737)
                      +        .......|...+.+++|++.++++|++|+.|+.|++||++.. ..+..+                    .+
T Consensus       196 ~--------~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~--------------------~~  247 (380)
T 3iz6_a          196 F--------GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY--------------------HG  247 (380)
T ss_dssp             E--------CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE--------------------CC
T ss_pred             e--------ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE--------------------CC
Confidence            0        011224677889999999866789999999999999999843 222221                    33


Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      |.. .|++++|+|++.+|++|+.|++|++||+.++.
T Consensus       248 h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          248 HEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             CSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred             cCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence            444 69999999999999999999999999998853

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-41  Score=353.75  Aligned_cols=209  Identities=18%  Similarity=0.295  Sum_probs=173.2

Q ss_pred             cceeecccCCceEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeE--EEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685           42 QERELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (737)
Q Consensus        42 ~~~~l~~H~~~V~~l~~s~~----g~~lasgs~dg~V~vwd~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  115 (737)
                      ..+.+++|.+.|++++|+|+    +.+|+||+.|++|+|||+..++.  ...+ .+|...|.+++|+|+  +.++++++.
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-~gh~~~v~~~~~~~~--~~~l~s~s~  100 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHT--LPIAASSSL  100 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECSS--SSEEEEEET
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-ccCCCCEEEEEECCC--CCEEEEEeC
Confidence            34667899999999999985    57999999999999999987654  3346 799999999999999  799999999


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      |++|++||+....          .+..+..|...+.+++|+| ++.+|++++.|+.|++||++.++..            
T Consensus       101 D~~i~lWd~~~~~----------~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~------------  157 (321)
T 3ow8_A          101 DAHIRLWDLENGK----------QIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKE------------  157 (321)
T ss_dssp             TSEEEEEETTTTE----------EEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEE------------
T ss_pred             CCcEEEEECCCCC----------EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCcee------------
Confidence            9999999998632          2566778888999999999 6689999999999999999887521            


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                                   .....+...+.+++|+|+ +++|++|+.|+.|++||+++++.+..+                    .
T Consensus       158 -------------~~~~~~~~~v~~~~~spd-g~~lasg~~dg~i~iwd~~~~~~~~~~--------------------~  203 (321)
T 3ow8_A          158 -------------YSLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATGKLLHTL--------------------E  203 (321)
T ss_dssp             -------------EEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------C
T ss_pred             -------------EEecCCCceEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEE--------------------c
Confidence                         111234567899999997 689999999999999999987655443                    2


Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +|.. +|.+++|+|++++|++|+.|+.|++||+.++
T Consensus       204 ~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~  238 (321)
T 3ow8_A          204 GHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHA  238 (321)
T ss_dssp             CCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred             ccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence            2333 5999999999999999999999999998763

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3e-41  Score=385.14  Aligned_cols=287  Identities=15%  Similarity=0.148  Sum_probs=208.9

Q ss_pred             cccccccccccccccceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCC
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~  106 (737)
                      ..+.+|+.    .+...++.+|.+.|++++|+|++. +|++|+.|++|++||..+++++..+ .+|...|.+++|+|+  
T Consensus       129 ~~v~~wd~----~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspd--  201 (611)
T 1nr0_A          129 GHVFLFDT----GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPD--  201 (611)
T ss_dssp             EEEEETTT----CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTT--
T ss_pred             eEEEEeeC----CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCC--
Confidence            46777772    345678899999999999999987 6999999999999999999988888 799999999999999  


Q ss_pred             CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee-------ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (737)
Q Consensus       107 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~  179 (737)
                      +.+|++|+.|++|++||+..+..          ...+       .+|...|.+++|+| ++.+|++++.|++|++||+++
T Consensus       202 g~~las~s~D~~i~lwd~~~g~~----------~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          202 GSLFASTGGDGTIVLYNGVDGTK----------TGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVAT  270 (611)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCE----------EEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEECCCcEEEEECCCCcE----------eeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCC
Confidence            79999999999999999876432          2233       27999999999999 668999999999999999987


Q ss_pred             CCCCCCCC--------------------CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc
Q 004685          180 GSSCPPAG--------------------SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF  239 (737)
Q Consensus       180 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~  239 (737)
                      ++......                    ....+....+|+...+.  ......+|...|.+++|+|+ +++|++++.|+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~--~~~~~~gh~~~v~~l~~spd-g~~l~s~s~D~~  347 (611)
T 1nr0_A          271 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS--IDQVRYGHNKAITALSSSAD-GKTLFSADAEGH  347 (611)
T ss_dssp             TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE--EEEEECCCSSCEEEEEECTT-SSEEEEEETTSC
T ss_pred             CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC--cceEEcCCCCCEEEEEEeCC-CCEEEEEeCCCc
Confidence            65431110                    01112233344444332  22334578899999999997 689999999999


Q ss_pred             EEEEECCCCCCcccccCCCCCC-----------------------------CCcc------ccc--cc--cccCCC----
Q 004685          240 ARLYDRRMLPPLTSCQKRMSPP-----------------------------PCVN------YFC--PM--HLSEHG----  276 (737)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~-----------------------------~~~~------~~~--~~--~~~~~~----  276 (737)
                      |++||+.++.....+.......                             .+..      .+.  +.  .....+    
T Consensus       348 v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~  427 (611)
T 1nr0_A          348 INSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV  427 (611)
T ss_dssp             EEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE
T ss_pred             EEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEE
Confidence            9999998765433221100000                             0000      000  00  000000    


Q ss_pred             ------------------CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc-eeeeecCCCCeeeeeccCCCC
Q 004685          277 ------------------RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTLNG  335 (737)
Q Consensus       277 ------------------~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~p~~~~  335 (737)
                                        .....+.+++|+|+|++|++|+.|+.|++||+..+... .....+...+..++|+|+.+.
T Consensus       428 ~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~  505 (611)
T 1nr0_A          428 AACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF  505 (611)
T ss_dssp             EEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             EEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCE
Confidence                              01124789999999999999999999999999875421 223567788899999997543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.6e-40  Score=352.63  Aligned_cols=218  Identities=18%  Similarity=0.274  Sum_probs=183.2

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      .+...+|++|.+.|++++|+|++++||||+.||+|+|||..+++....+ ..|...|.+++|+|+  +.+|++|+.|+.+
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp~--g~~lasg~~d~~i  130 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAPS--GCAIACGGLDNKC  130 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECTT--SSEEEEESTTSEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECCC--CCEEEEeeCCCCE
Confidence            3567889999999999999999999999999999999999999888888 689999999999999  7999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      ++|++.......    .......+..|...|.+++|+| ++..|++++.|++|++||+++++..                
T Consensus       131 ~v~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~----------------  189 (354)
T 2pbi_B          131 SVYPLTFDKNEN----MAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLL----------------  189 (354)
T ss_dssp             EEEECCCCTTCC----SGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE----------------
T ss_pred             EEEEEecccccc----ccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEE----------------
Confidence            999987532111    1123456778999999999999 5578899999999999999887521                


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                               ..+..|...|.+++|+|.. +++|++|+.|+.|++||+++++.+..+                    .+|.
T Consensus       190 ---------~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~--------------------~~h~  240 (354)
T 2pbi_B          190 ---------QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--------------------ETHE  240 (354)
T ss_dssp             ---------EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCS
T ss_pred             ---------EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCC
Confidence                     2223567789999998852 579999999999999999987654433                    2233


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      . .|++++|+|++.+|++|+.|++|++||+.+.
T Consensus       241 ~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          241 S-DVNSVRYYPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             S-CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             C-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            3 5999999999999999999999999998863

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.7e-41  Score=355.45  Aligned_cols=219  Identities=17%  Similarity=0.236  Sum_probs=179.3

Q ss_pred             ccccceeecccCC-ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685           39 RLSQERELEGHQG-CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAG  115 (737)
Q Consensus        39 ~~~~~~~l~~H~~-~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  115 (737)
                      .++.+.+|++|.+ .|.+++|+|+|++||+|+.|++|+|||+.++...  ..+..+|...|.+++|+|+  +.+|++|+.
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~s~   81 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC--GNYLASASF   81 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT--SSEEEEEET
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC--CCEEEEEEC
Confidence            3567788999988 9999999999999999999999999999887643  2333689999999999999  799999999


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      |+.|++|++.....        ..+..+.+|...|.+++|+| ++++|++|+.|++|++||++.....            
T Consensus        82 D~~v~iw~~~~~~~--------~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~------------  140 (345)
T 3fm0_A           82 DATTCIWKKNQDDF--------ECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEY------------  140 (345)
T ss_dssp             TSCEEEEEECCC-E--------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCE------------
T ss_pred             CCcEEEEEccCCCe--------EEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCe------------
Confidence            99999999875332        23567889999999999999 6689999999999999999875421            


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                                ..+.....|...|.+++|+|+ +.+|++++.|+.|++||++..+....           .     .+  .
T Consensus       141 ----------~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~~~-----------~-----~~--~  191 (345)
T 3fm0_A          141 ----------ECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCC-----------A-----TL--E  191 (345)
T ss_dssp             ----------EEEEEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEEEE-----------E-----EE--C
T ss_pred             ----------EEEEEecCcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCEEEE-----------E-----Ee--c
Confidence                      112233457788999999997 58999999999999999876532110           0     01  2


Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +|.. .|.+++|+|+|++|++|+.|++|++|+...
T Consensus       192 ~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~  225 (345)
T 3fm0_A          192 GHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQYL  225 (345)
T ss_dssp             CCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             CCCC-ceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence            3443 699999999999999999999999999754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.8e-40  Score=342.56  Aligned_cols=213  Identities=21%  Similarity=0.340  Sum_probs=183.9

Q ss_pred             ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc
Q 004685           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (737)
Q Consensus        39 ~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~  118 (737)
                      .+....++.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+ .+|...|.+++|+|+  +++|++|+.|+.
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~d~~   88 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD--SNLLVSASDDKT   88 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCC--CCEEEEECCCCE
Confidence            35667789999999999999999999999999999999999999988888 799999999999999  799999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (737)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~  198 (737)
                      |++||+...          +.+..+.+|...|.++.|+| ++.+|++++.|+.|++||+++++.                
T Consensus        89 i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~----------------  141 (312)
T 4ery_A           89 LKIWDVSSG----------KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKC----------------  141 (312)
T ss_dssp             EEEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE----------------
T ss_pred             EEEEECCCC----------cEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEE----------------
Confidence            999999863          23677889999999999999 668999999999999999987652                


Q ss_pred             eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                               +.....|...+.+++|+|+ +.+|++++.|+.|++||+++++.+..+..                    +.
T Consensus       142 ---------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--------------------~~  191 (312)
T 4ery_A          142 ---------LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLID--------------------DD  191 (312)
T ss_dssp             ---------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECC--------------------SS
T ss_pred             ---------EEEecCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeEEec--------------------cC
Confidence                     1222356778999999997 68999999999999999998765433311                    12


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ...+..++|+|++++|++++.|+.|++||+.++
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            225899999999999999999999999998874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.9e-41  Score=356.19  Aligned_cols=211  Identities=18%  Similarity=0.193  Sum_probs=160.4

Q ss_pred             ecccCCceEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeEEEEE---cccCccceEEEEEeeCCCCCEEEEEECC
Q 004685           46 LEGHQGCVNAISWNSKGSLLISGSD------DTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGD  116 (737)
Q Consensus        46 l~~H~~~V~~l~~s~~g~~lasgs~------dg~V~vwd~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~~l~sgs~d  116 (737)
                      ..+|...|++++|+|||++||+|+.      |+.|++|+..++.....+   ...|...|.+++|+|+   ..+++++.|
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d---~~~l~~s~d  114 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE---KGILVASDS  114 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT---TEEEEEETT
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC---CCEEEEECC
Confidence            3579999999999999999999997      788999998776533221   1468899999999998   357778899


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004685          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (737)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~  196 (737)
                      |+|+|||+.......      .......+|...|++++|+| ++.+|++|+.|+.|++||+++++.              
T Consensus       115 g~v~lWd~~~~~~~~------~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~--------------  173 (357)
T 4g56_B          115 GAVELWEILEKESLL------VNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAV--------------  173 (357)
T ss_dssp             SCEEEC--------C------CCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEE--------------
T ss_pred             CEEEEeeccccceeE------EEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE--------------
Confidence            999999998654321      11234457999999999999 668999999999999999988652              


Q ss_pred             EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004685          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (737)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (737)
                                 +..+..|...|++++|+|++..++++++.|+.|++||++++++...+..                  . 
T Consensus       174 -----------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~------------------~-  223 (357)
T 4g56_B          174 -----------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF------------------C-  223 (357)
T ss_dssp             -----------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC------------------T-
T ss_pred             -----------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee------------------c-
Confidence                       2233467789999999998667899999999999999998775543321                  1 


Q ss_pred             CcccceeEEEEcCC-CCEEEEEeCCCeEEEEEcCC
Q 004685          277 RSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       277 ~~~~~i~~v~~sp~-g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .....+.+++|+|+ +.+|++|+.|+.|++||+.+
T Consensus       224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~  258 (357)
T 4g56_B          224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN  258 (357)
T ss_dssp             TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred             cccccccchhhhhcccceEEEeecccceeEEECCC
Confidence            11225999999997 46788999999999999876

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-40  Score=351.33  Aligned_cols=209  Identities=18%  Similarity=0.180  Sum_probs=161.3

Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------CeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-----------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (737)
Q Consensus        47 ~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  115 (737)
                      ..|...|.+++|+|||++|++++ |+++++||...           ....... ..+...|.+++|+|+   ..|++|+.
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~d---~~l~~~s~  101 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG-VQTEAGVADLTWVGE---RGILVASD  101 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE-EEESSCEEEEEEETT---TEEEEEET
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee-eccCCCEEEEEEeCC---CeEEEEEC
Confidence            35778899999999999999888 67888887321           0111111 235678999999998   57899999


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      ||+|+|||+..+....      .....+.+|...|++++|+| ++++|++|+.|++|++||+++++.             
T Consensus       102 dg~v~lWd~~~~~~~~------~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~-------------  161 (344)
T 4gqb_B          102 SGAVELWELDENETLI------VSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVV-------------  161 (344)
T ss_dssp             TSEEEEEEECTTSSCE------EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-------------
T ss_pred             CCEEEEEeccCCCcee------EeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE-------------
Confidence            9999999998643211      11234558999999999999 668999999999999999988752             


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                                  +..+.+|...|.+++|+|++..+|++++.|+.|++||+++++....+..                  .
T Consensus       162 ------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------~  211 (344)
T 4gqb_B          162 ------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC------------------S  211 (344)
T ss_dssp             ------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------
T ss_pred             ------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec------------------c
Confidence                        2334568889999999998767899999999999999998876554321                  1


Q ss_pred             CCcccceeEEEEcCC-CCEEEEEeCCCeEEEEEcCCC
Q 004685          276 GRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~-g~~l~~g~~dg~v~iwd~~~~  311 (737)
                       .....+.+++|+|+ +++|++|+.||.|++||++++
T Consensus       212 -~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~  247 (344)
T 4gqb_B          212 -APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST  247 (344)
T ss_dssp             ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred             -eeeccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence             12224899999995 568889999999999998863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7e-40  Score=371.79  Aligned_cols=356  Identities=22%  Similarity=0.315  Sum_probs=290.4

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      .+.++.+++|+.   ..+....+.+|...|.+++|+|++++|++++.|+.|++||.. ++.+..+ .+|...|.+++|+|
T Consensus       198 ~~~d~~v~~w~~---~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~-~~~~~~v~~v~~~~  272 (577)
T 2ymu_A          198 ASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVNGVAFRP  272 (577)
T ss_dssp             EETTSEEEEECT---TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEE-CCCSSCEEEEEECT
T ss_pred             EcCCCEEEEEeC---CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEE-ecCCCCEEEEEEcC
Confidence            456788999983   456778899999999999999999999999999999999964 5677777 78999999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      +  +..|++++.|+.|++|+...           +.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+....  
T Consensus       273 d--~~~l~~~~~d~~i~~w~~~~-----------~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~--  336 (577)
T 2ymu_A          273 D--GQTIASASDDKTVKLWNRNG-----------QLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQH--  336 (577)
T ss_dssp             T--SSEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCE--
T ss_pred             C--CCEEEEEeCCCEEEEEeCCC-----------cEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe--
Confidence            9  79999999999999999753           33677889999999999999 66899999999999999976542  


Q ss_pred             CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (737)
                                              +.....|...+.+++|+|+ +.+|++++.|+.|++||.. ++.+..+         
T Consensus       337 ------------------------~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v~~~~~~-~~~~~~~---------  381 (577)
T 2ymu_A          337 ------------------------LQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRN-GQLLQTL---------  381 (577)
T ss_dssp             ------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETT-CCEEEEE---------
T ss_pred             ------------------------eEEEeCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEcCC-CCEEEEe---------
Confidence                                    1122356778999999997 6899999999999999964 3322221         


Q ss_pred             ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCC
Q 004685          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIH  343 (737)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  343 (737)
                                 .+|.. .|++++|+|+|++|++++.|+.|++||.. ++....+..+...+..++|+|+...++....  
T Consensus       382 -----------~~~~~-~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~--  446 (577)
T 2ymu_A          382 -----------TGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASD--  446 (577)
T ss_dssp             -----------ECCSS-CEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred             -----------cCCCC-CeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcC--
Confidence                       12332 59999999999999999999999999964 4555666677777888888886432111000  


Q ss_pred             CcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccch
Q 004685          344 DFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDA  423 (737)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (737)
                                                                                                      
T Consensus       447 --------------------------------------------------------------------------------  446 (577)
T 2ymu_A          447 --------------------------------------------------------------------------------  446 (577)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhhhhhhhhcCCCCCCCC
Q 004685          424 QMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGG  503 (737)
Q Consensus       424 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  503 (737)
                                                                                                      
T Consensus       447 --------------------------------------------------------------------------------  446 (577)
T 2ymu_A          447 --------------------------------------------------------------------------------  446 (577)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCcccccccccccceeeeccCCCCc
Q 004685          504 ARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSA  583 (737)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (737)
                                                                                                      
T Consensus       447 --------------------------------------------------------------------------------  446 (577)
T 2ymu_A          447 --------------------------------------------------------------------------------  446 (577)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEE
Q 004685          584 RETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIK  663 (737)
Q Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~  663 (737)
                                         ++.+..|....+..+.+.+|...++++.    |+||+++|++|+.|++|+||| .+++++.
T Consensus       447 -------------------d~~v~~w~~~~~~~~~~~~~~~~v~~~~----~spd~~~las~~~d~~i~iw~-~~~~~~~  502 (577)
T 2ymu_A          447 -------------------DKTVKLWNRNGQLLQTLTGHSSSVRGVA----FSPDGQTIASASDDKTVKLWN-RNGQLLQ  502 (577)
T ss_dssp             -------------------TSEEEEEETTSCEEEEEECCSSCEEEEE----ECTTSCEEEEEETTSEEEEEE-TTSCEEE
T ss_pred             -------------------CCEEEEEECCCCEEEEEcCCCCCEEEEE----EcCCCCEEEEEeCCCEEEEEc-CCCCEEE
Confidence                               0000001122345668899999988777    899999999999999999999 4799999


Q ss_pred             EeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCCCCCCCh
Q 004685          664 MLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT  715 (737)
Q Consensus       664 ~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~  715 (737)
                      .|.+|.+.|++|+|+|++++|||++.||+|+|||. +++++.++.||.++++
T Consensus       503 ~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~  553 (577)
T 2ymu_A          503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVW  553 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEE
T ss_pred             EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEE
Confidence            99999999999999999999999999999999995 6888999999999886

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-39  Score=368.34  Aligned_cols=241  Identities=22%  Similarity=0.338  Sum_probs=198.7

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      .+.++.+++|+.   ..+.+..+.+|...|++++|+|++++|++++.|+.|++||.. ++.+..+ .+|...|.+++|+|
T Consensus       239 ~~~d~~i~~w~~---~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~  313 (577)
T 2ymu_A          239 ASDDKTVKLWNR---NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSP  313 (577)
T ss_dssp             EETTSCEEEECT---TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECT
T ss_pred             EeCCCEEEEEeC---CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECC
Confidence            456788999983   456778899999999999999999999999999999999964 5667777 78999999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      +  +.+|++++.|+.|++||...           ..+..+.+|...|.+++|+| ++.+|++++.|+.|++||.....  
T Consensus       314 ~--~~~l~t~~~d~~i~~w~~~~-----------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~~~--  377 (577)
T 2ymu_A          314 D--GQTIASASDDKTVKLWNRNG-----------QHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQL--  377 (577)
T ss_dssp             T--SSEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTCCE--
T ss_pred             C--CCEEEEEeCCCeEEEEeCCC-----------CeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCCCE--
Confidence            9  79999999999999999864           22567788999999999999 66899999999999999954321  


Q ss_pred             CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (737)
                                              +.....|...|.+++|+|+ +++|++++.|+.|++||.. ++.+..+         
T Consensus       378 ------------------------~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~v~~~~~~-~~~~~~~---------  422 (577)
T 2ymu_A          378 ------------------------LQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRN-GQLLQTL---------  422 (577)
T ss_dssp             ------------------------EEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECTT-CCEEEEE---------
T ss_pred             ------------------------EEEecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCC-CCEEEEe---------
Confidence                                    1222346778999999997 5899999999999999964 3322221         


Q ss_pred             ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004685          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (737)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (737)
                                 .+|.. .|++++|+|++++|++++.|+.|++||.. ++....+..+...+..++|+|+.
T Consensus       423 -----------~~~~~-~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~  479 (577)
T 2ymu_A          423 -----------TGHSS-SVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDG  479 (577)
T ss_dssp             -----------ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTS
T ss_pred             -----------cCCCC-CeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCC
Confidence                       12333 59999999999999999999999999975 46666677778888889998864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.2e-39  Score=346.97  Aligned_cols=209  Identities=20%  Similarity=0.302  Sum_probs=167.2

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCc------------------cceEEEEEeeCCCCCE
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS------------------ANVFCTKFVPETSDEL  109 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~------------------~~V~~v~~sp~~~~~~  109 (737)
                      +|.+.|++++|+|+|++||+|+ ++.++||++.+++.+..+ ..|.                  ..|.+++|+|+  +.+
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--g~~  137 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GKF  137 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECTT--SSE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECCC--CCE
Confidence            6999999999999999999986 689999999999888777 3332                  24999999999  799


Q ss_pred             EEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCC
Q 004685          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (737)
Q Consensus       110 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~  189 (737)
                      |++|+.|+.|++||+...          +.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++..      
T Consensus       138 l~s~~~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~------  200 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENR----------KIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS------  200 (393)
T ss_dssp             EEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE------
T ss_pred             EEEEcCCCeEEEEECCCC----------cEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeE------
Confidence            999999999999999853          23677889999999999999 5688999999999999999876521      


Q ss_pred             CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccc
Q 004685          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (737)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (737)
                           ..           +    .+...+.+++|+|.++.+|++|+.|+.|++||++++..+..+....           
T Consensus       201 -----~~-----------~----~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-----------  249 (393)
T 1erj_A          201 -----LT-----------L----SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-----------  249 (393)
T ss_dssp             -----EE-----------E----ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------
T ss_pred             -----EE-----------E----EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccc-----------
Confidence                 00           0    1235689999999657899999999999999999876544332110           


Q ss_pred             ccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       270 ~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                        ....+|.. .|.+++|+|+|++|++|+.|+.|++||+.+.
T Consensus       250 --~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          250 --ESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             -----CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             --cCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence              00122333 6999999999999999999999999998873

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.6e-39  Score=334.58  Aligned_cols=212  Identities=18%  Similarity=0.291  Sum_probs=177.0

Q ss_pred             ccccceeecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCC-----CeEEEEEcccCccceEEEEEeeCCCCCEEEE
Q 004685           39 RLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVVS  112 (737)
Q Consensus        39 ~~~~~~~l~~H~~~V~~l~~s~~g-~~lasgs~dg~V~vwd~~~-----~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s  112 (737)
                      .+.+..+|++|.+.|++++|+|++ ++|++|+.|++|++||+..     +..+..+ .+|...|.+++|+|+  +.+|++
T Consensus         6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~d--g~~l~s   82 (319)
T 3frx_A            6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTAD--GAYALS   82 (319)
T ss_dssp             EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECTT--SSEEEE
T ss_pred             EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECCC--CCEEEE
Confidence            355677899999999999999965 8999999999999999864     2345667 799999999999999  799999


Q ss_pred             EECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCc
Q 004685          113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  192 (737)
Q Consensus       113 gs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~  192 (737)
                      |+.|++|++||+..+.          .+..+.+|...|.+++|+| ++.+|++|+.|++|++||++...           
T Consensus        83 ~s~D~~v~~wd~~~~~----------~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~-----------  140 (319)
T 3frx_A           83 ASWDKTLRLWDVATGE----------TYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQC-----------  140 (319)
T ss_dssp             EETTSEEEEEETTTTE----------EEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSCE-----------
T ss_pred             EeCCCEEEEEECCCCC----------eeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe-----------
Confidence            9999999999998632          3677889999999999999 66899999999999999986432           


Q ss_pred             cceEEEeccCCceeeccCCCCCccceEEEEEecCC-----CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-----PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (737)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-----~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (737)
                                     +.....|...+.++.|+|..     +..+++++.|+.|++||++..+....+             
T Consensus       141 ---------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------------  192 (319)
T 3frx_A          141 ---------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF-------------  192 (319)
T ss_dssp             ---------------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE-------------
T ss_pred             ---------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee-------------
Confidence                           22233567789999999852     348999999999999999876543322             


Q ss_pred             ccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                             .+|.. .|.+++|+|+|++|++|+.||.|++||+.++
T Consensus       193 -------~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          193 -------IGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             -------CCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             -------cCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence                   22433 6999999999999999999999999998874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-38  Score=332.62  Aligned_cols=222  Identities=14%  Similarity=0.153  Sum_probs=169.7

Q ss_pred             cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEEccc-CccceEEEEEeeCCCCCEEEEEE
Q 004685           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETG-HSANVFCTKFVPETSDELVVSGA  114 (737)
Q Consensus        38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~--~~~~~~~~~-h~~~V~~v~~sp~~~~~~l~sgs  114 (737)
                      +.++.+.+|++|.++|++++|+|+  +||+|+.|++|+|||+..+  +.+..+... |...|.+++|+|+  +.+|++|+
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~las~s   77 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH--TSLLAAGS   77 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT--SSEEEEEE
T ss_pred             cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC--CCEEEEEe
Confidence            345677889999999999999987  9999999999999999875  444555234 9999999999999  79999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                      .|++|+|||+......   .....++..+.+|...|.+++|+| ++.+|++|+.|++|++||++.....           
T Consensus        78 ~D~~v~iw~~~~~~~~---~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~-----------  142 (330)
T 2hes_X           78 FDSTVSIWAKEESADR---TFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEE-----------  142 (330)
T ss_dssp             TTSCEEEEEC----------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCC-----------
T ss_pred             CCCcEEEEEcccCcCc---cccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCC-----------
Confidence            9999999998642110   001233567889999999999999 6689999999999999999643210           


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC--CcccccCCCCCCCCccccccccc
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP--PLTSCQKRMSPPPCVNYFCPMHL  272 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  272 (737)
                                ...+.....|...|.+++|+|+ +.+|++++.|+.|++||.+...  .+..+                  
T Consensus       143 ----------~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~~~~~~~~------------------  193 (330)
T 2hes_X          143 ----------YECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDWECVAVL------------------  193 (330)
T ss_dssp             ----------CEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEE------------------
T ss_pred             ----------eEEEEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCeeEEEEc------------------
Confidence                      0112233467789999999997 5899999999999999987542  11111                  


Q ss_pred             cCCCCcccceeEEEEcCC--CCEEEEEeCCCeEEEEEcCC
Q 004685          273 SEHGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       273 ~~~~~~~~~i~~v~~sp~--g~~l~~g~~dg~v~iwd~~~  310 (737)
                        .+|.. .|.+++|+|+  +.+|++|+.|++|++||+..
T Consensus       194 --~~h~~-~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          194 --NGHEG-TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             --CCCSS-CEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             --cCCCC-cEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence              23443 6999999998  77899999999999999876

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.8e-38  Score=332.15  Aligned_cols=213  Identities=19%  Similarity=0.273  Sum_probs=173.7

Q ss_pred             ccccceeecccCCceEEEEE-----cC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEEcccCccceEEEEEeeCC
Q 004685           39 RLSQERELEGHQGCVNAISW-----NS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPET  105 (737)
Q Consensus        39 ~~~~~~~l~~H~~~V~~l~~-----s~-~g~~lasgs~dg~V~vwd~~~~-------~~~~~~~~~h~~~V~~v~~sp~~  105 (737)
                      ..+...+|+||.+.|++++|     ++ ++++|++|+.|++|+|||+.+.       .....+ .+|...|.+++|+|+ 
T Consensus        10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~-   87 (343)
T 2xzm_R           10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQE-   87 (343)
T ss_dssp             EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECSS-
T ss_pred             EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECCC-
Confidence            34566789999999999999     77 8999999999999999999753       345566 799999999999999 


Q ss_pred             CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 004685          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (737)
Q Consensus       106 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~  185 (737)
                       +.++++|+.|++|++||++...          .+..+.+|...|.+++|+| ++.+|++++.|+.|++||+.....   
T Consensus        88 -~~~l~s~s~D~~v~lwd~~~~~----------~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~---  152 (343)
T 2xzm_R           88 -NCFAISSSWDKTLRLWDLRTGT----------TYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECK---  152 (343)
T ss_dssp             -TTEEEEEETTSEEEEEETTSSC----------EEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEE---
T ss_pred             -CCEEEEEcCCCcEEEEECCCCc----------EEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCce---
Confidence             7999999999999999998632          3677889999999999999 668899999999999999874321   


Q ss_pred             CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC---------CcEEEEEeCCCcEEEEECCCCCCcccccC
Q 004685          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---------PHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (737)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---------~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~  256 (737)
                                          ........|...+.+++|+|..         +.+|++++.|+.|++||.+. +....+  
T Consensus       153 --------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~--  209 (343)
T 2xzm_R          153 --------------------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTF--  209 (343)
T ss_dssp             --------------------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEEEEE--
T ss_pred             --------------------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ceeEEE--
Confidence                                1122233567789999999974         26899999999999999532 211111  


Q ss_pred             CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                                        .+|.. .|.+++|+|+|++|++|+.||.|++||+..
T Consensus       210 ------------------~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          210 ------------------KAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             ------------------ECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             ------------------cCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence                              22333 599999999999999999999999999854

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8e-40  Score=405.00  Aligned_cols=473  Identities=17%  Similarity=0.227  Sum_probs=322.1

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      .+.+++|++|+  ..+.+.+.++.+|.+.|++++|+|++++||+|+.|+.|+|||+.+++.+..+ .+|...|.+++|+|
T Consensus       633 ~~~d~~i~vw~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~  709 (1249)
T 3sfz_A          633 CGADKTLQVFK--AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTN  709 (1249)
T ss_dssp             EETTSCEEEEE--TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECS
T ss_pred             EeCCCeEEEEE--CCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEec
Confidence            46778999999  5667788999999999999999999999999999999999999999999999 79999999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      +.++.++++|+.|+.|++||+....          +...+.+|...|++++|+| ++.++++++.||.|++||++++...
T Consensus       710 ~~~~~~l~sg~~d~~v~vwd~~~~~----------~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~  778 (1249)
T 3sfz_A          710 KSNHLLLATGSNDFFLKLWDLNQKE----------CRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANER  778 (1249)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTSSS----------EEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEE
T ss_pred             CCCceEEEEEeCCCeEEEEECCCcc----------hhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCccc
Confidence            6446799999999999999998632          3677889999999999999 6689999999999999999876421


Q ss_pred             CC----------------------CCCCCC---------ccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEE
Q 004685          184 PP----------------------AGSSHQ---------ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL  232 (737)
Q Consensus       184 ~~----------------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~  232 (737)
                      ..                      ......         .....+|+...+..... ....|...+.+++|+|+ +.+++
T Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~sp~-~~~l~  856 (1249)
T 3sfz_A          779 KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE-IHTGHHSTIQYCDFSPY-DHLAV  856 (1249)
T ss_dssp             EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE-EECSSSSCCCEEEECSS-TTEEE
T ss_pred             ceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE-EcCCCCCceEEEEEcCC-CCEEE
Confidence            00                      000001         12233444444432211 12356788999999997 58999


Q ss_pred             EEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       233 t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      +++.|+.|++||+.++..+..+                    .+|.. .|++++|+|+|.+|++++.||.|++|++.+..
T Consensus       857 ~~~~dg~v~vwd~~~~~~~~~~--------------------~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~  915 (1249)
T 3sfz_A          857 IALSQYCVELWNIDSRLKVADC--------------------RGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKKVC  915 (1249)
T ss_dssp             EECSSSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHHHH
T ss_pred             EEeCCCeEEEEEcCCCceeeec--------------------CCCcc-ceEEEEECCCCCEEEEEeCCCeEEEEEccccc
Confidence            9999999999999977644333                    22333 69999999999999999999999999976421


Q ss_pred             cc-------------------------------------eeeeecCCCCeeeeeccCCCCccCCCCCCCccccccccccc
Q 004685          313 GR-------------------------------------AMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE  355 (737)
Q Consensus       313 ~~-------------------------------------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  355 (737)
                      ..                                     .........+..++|+|+...++.....+.......     
T Consensus       916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~-----  990 (1249)
T 3sfz_A          916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL-----  990 (1249)
T ss_dssp             SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEET-----
T ss_pred             eeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEc-----
Confidence            10                                     011112344556666666554443322221111000     


Q ss_pred             ccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhc
Q 004685          356 VATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR  435 (737)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  435 (737)
                                         ..+...        ..+..+...+.                                 .+ 
T Consensus       991 -------------------~~~~~~--------~~~~~h~~~v~---------------------------------~l- 1009 (1249)
T 3sfz_A          991 -------------------PNNRVF--------SSGVGHKKAVR---------------------------------HI- 1009 (1249)
T ss_dssp             -------------------TTTSCE--------EECCCCSSCCC---------------------------------CE-
T ss_pred             -------------------CCCcee--------eecccCCCceE---------------------------------EE-
Confidence                               000000        00000000000                                 00 


Q ss_pred             cCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCcCcccc
Q 004685          436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLS  515 (737)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  515 (737)
                                                       ...|....++++..+....+|+..++......       .+...+. 
T Consensus      1010 ---------------------------------~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~v~- 1048 (1249)
T 3sfz_A         1010 ---------------------------------QFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ-------AHQETVK- 1048 (1249)
T ss_dssp             ---------------------------------EECSSSSCEEEECSSSBEEEEETTTTEEECCB-------CCSSCEE-
T ss_pred             ---------------------------------EECCCCCEEEEEcCCCEEEEEECCCCceEEEe-------cCCCcEE-
Confidence                                             00011111110111111112222111100000       0000000 


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCcccccccccccceeeeccCCCCccccccCCCCCCC
Q 004685          516 LSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGS  595 (737)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (737)
                                                                               .+.+.              ..+.
T Consensus      1049 ---------------------------------------------------------~~~~~--------------~~~~ 1057 (1249)
T 3sfz_A         1049 ---------------------------------------------------------DFRLL--------------QDSR 1057 (1249)
T ss_dssp             ---------------------------------------------------------EEEEC--------------SSSE
T ss_pred             ---------------------------------------------------------EEEEc--------------CCCc
Confidence                                                                     00000              0011


Q ss_pred             CCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEE
Q 004685          596 PSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCV  675 (737)
Q Consensus       596 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v  675 (737)
                      .++.+.++.+.+|.....+..+.+.+|.+.++++.    |+||++++++|+.|++|+|||+.+++++..+.+|.+.|+++
T Consensus      1058 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~----~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~ 1133 (1249)
T 3sfz_A         1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA----ISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCS 1133 (1249)
T ss_dssp             EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEE----ECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEE
T ss_pred             EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEE----ECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEE
Confidence            12223444566677777888999999999998877    99999999999999999999999999999999999999999


Q ss_pred             EecCCCCeEEEEecCCcEEEEcCCCCCCcccc---------CCCCCCCh
Q 004685          676 QCHPFDCVVATSGIDNTIKIWTPSASVPSIVS---------GGAAGPDT  715 (737)
Q Consensus       676 ~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~---------~~~~~~~~  715 (737)
                      +|||++++|||++.||+|++||+.+++++...         .+|.++++
T Consensus      1134 ~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1182 (1249)
T 3sfz_A         1134 AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1182 (1249)
T ss_dssp             EECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEE
Confidence            99999999999999999999999999988876         56777765

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.1e-37  Score=324.81  Aligned_cols=223  Identities=20%  Similarity=0.302  Sum_probs=177.7

Q ss_pred             cccccccccccccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe-----EEEEEcccCccceEEEEEee
Q 004685           30 LQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        30 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~-----~~~~~~~~h~~~V~~v~~sp  103 (737)
                      +.++....+++++..+|+||++.|++|+|+|+ +++||||+.|++|+|||+.+.+     ....+ .+|...|.+++|+|
T Consensus        18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~   96 (340)
T 4aow_A           18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVISS   96 (340)
T ss_dssp             --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEECT
T ss_pred             EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEECC
Confidence            33444556677788899999999999999997 6899999999999999987643     45556 78999999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      +  +.+|++++.|+.|++|+.....          .......+...+..+.+++ .+.+|++++.|+.+++||+..... 
T Consensus        97 d--g~~l~s~~~d~~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~-  162 (340)
T 4aow_A           97 D--GQFALSGSWDGTLRLWDLTTGT----------TTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCK-  162 (340)
T ss_dssp             T--SSEEEEEETTSEEEEEETTTTE----------EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE-
T ss_pred             C--CCEEEEEcccccceEEeecccc----------eeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCce-
Confidence            9  7999999999999999998632          2455566778888999998 567888999999999999876531 


Q ss_pred             CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCC
Q 004685          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (737)
                                             .......|...+..++|+++. ..++++++.|+.|++||+++.+.+..+        
T Consensus       163 -----------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~--------  211 (340)
T 4aow_A          163 -----------------------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH--------  211 (340)
T ss_dssp             -----------------------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE--------
T ss_pred             -----------------------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe--------
Confidence                                   122334567788999998764 347889999999999999987654433        


Q ss_pred             CccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                                  .+|.. .|++++|+|++++|++|+.|+.|++||+.+.
T Consensus       212 ------------~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          212 ------------IGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             ------------CCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ------------cCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence                        22333 6999999999999999999999999998873

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-37  Score=331.35  Aligned_cols=236  Identities=11%  Similarity=0.155  Sum_probs=177.1

Q ss_pred             cccCCceEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCe------EEEEEccc----------CccceEEEEEeeCC
Q 004685           47 EGHQGCVNAISWNSKGS-LLISGSDDTHINVWSY----SSRK------LLHSIETG----------HSANVFCTKFVPET  105 (737)
Q Consensus        47 ~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~----~~~~------~~~~~~~~----------h~~~V~~v~~sp~~  105 (737)
                      ..|.++|++++|+|+++ +||+|+.||.|++||+    .+++      ....+ ..          |...|.+++|+|+ 
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~-  119 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAEL-RHPFALSASSGKTTNQVTCLAWSHD-  119 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEE-ECCCCCC------CBCEEEEEECTT-
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccc-cccccccccccCCCCceEEEEEcCC-
Confidence            34669999999999999 9999999999999999    8877      44444 22          6789999999998 


Q ss_pred             CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 004685          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (737)
Q Consensus       106 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~  185 (737)
                       +.+|++|+.||.|++||...           ..+..+..|...|.+++|+| ++.+|++++.|+.|++||+.+++....
T Consensus       120 -~~~l~~~~~dg~i~i~~~~~-----------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          120 -GNSIVTGVENGELRLWNKTG-----------ALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             -SSEEEEEETTSCEEEEETTS-----------CEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             -CCEEEEEeCCCeEEEEeCCC-----------CeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEE
Confidence             79999999999999999432           33677888999999999999 668899999999999999987753210


Q ss_pred             CCCCCCccceEEEeccCCce--eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685          186 AGSSHQECRNILLDLRCGAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (737)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (737)
                      .            .......  ............+.+++|+|+  ..+++++.|+.|++||++..+.+..+.        
T Consensus       187 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~~--------  244 (425)
T 1r5m_A          187 F------------ELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKLI--------  244 (425)
T ss_dssp             E------------CCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEEC--------
T ss_pred             e------------eccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeeec--------
Confidence            0            0000000  000000111223888999996  479999999999999999876544331        


Q ss_pred             ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (737)
                                  +|.. .|.+++|+|++++|++++.|+.|++||+.+++....+..+...+..++|+|+
T Consensus       245 ------------~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  300 (425)
T 1r5m_A          245 ------------GHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD  300 (425)
T ss_dssp             ------------CCSS-CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT
T ss_pred             ------------cCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCC
Confidence                        1222 5999999999999999999999999999997766666667777777888774

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-37  Score=334.43  Aligned_cols=244  Identities=16%  Similarity=0.225  Sum_probs=187.2

Q ss_pred             Cccccccccccccccc-ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEEcccCccceEEE
Q 004685           25 DVNHSLQMHSSLVRRL-SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS----RKLLHSIETGHSANVFCT   99 (737)
Q Consensus        25 ~~~~~~~~~~~~~~~~-~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~----~~~~~~~~~~h~~~V~~v   99 (737)
                      +.++.|++|+...... ++...+ .|...|++++|+|++++|++|+.||.|++||+.+    .+.+..+ .+|...|.++
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~  119 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTV  119 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEE
Confidence            6788999999554433 244444 5899999999999999999999999999999987    3467777 7899999999


Q ss_pred             EEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (737)
Q Consensus       100 ~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~  179 (737)
                      +|+|+. +.+|++++.|+.|++||+.......... ..........|...|.+++|+|+++.+|++++.|+.|++||+++
T Consensus       120 ~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  197 (416)
T 2pm9_A          120 KFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNY-TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA  197 (416)
T ss_dssp             EECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTC-CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred             EEcCCC-CCEEEEEcCCCeEEEEECCCCccccccc-cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence            999984 6899999999999999998754110000 00112334679999999999996578999999999999999988


Q ss_pred             CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC---cEEEEECCCCC-Cccccc
Q 004685          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLP-PLTSCQ  255 (737)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg---~i~iwd~~~~~-~~~~~~  255 (737)
                      ++..              ..+..     ......|...+.+++|+|++..++++++.|+   .|++||+++.. ++..+.
T Consensus       198 ~~~~--------------~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~  258 (416)
T 2pm9_A          198 KKEV--------------IHLSY-----TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN  258 (416)
T ss_dssp             TEEE--------------EEECC-----CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC
T ss_pred             CCcc--------------eEEec-----cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee
Confidence            6532              00000     0001223678999999998667999999999   99999999753 222211


Q ss_pred             CCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 004685          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                                         .+|.. .|.+++|+| ++.+|++++.|+.|++||+.++
T Consensus       259 -------------------~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          259 -------------------QGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             -------------------SCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred             -------------------cCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence                               02333 599999999 9999999999999999998763

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.7e-37  Score=349.70  Aligned_cols=233  Identities=10%  Similarity=0.114  Sum_probs=190.0

Q ss_pred             cccccccccccccc----ccceeecccCCc-eEEEEEcC--CCCEEEEEeCCCcEEEEECCCC--------eEEEEEccc
Q 004685           27 NHSLQMHSSLVRRL----SQERELEGHQGC-VNAISWNS--KGSLLISGSDDTHINVWSYSSR--------KLLHSIETG   91 (737)
Q Consensus        27 ~~~~~~~~~~~~~~----~~~~~l~~H~~~-V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~--------~~~~~~~~~   91 (737)
                      ++.+.+|+.  .+.    +....+.+|.+. |++++|+|  ++++||+|+.||.|+|||+.++        +.+..+ ..
T Consensus        38 ~~~v~v~~~--~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~  114 (615)
T 1pgu_A           38 GKSAFVRCL--DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QV  114 (615)
T ss_dssp             TTEEEEEEC--CSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-EC
T ss_pred             CCeEEEEEC--CCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh-hc
Confidence            578999994  355    788999999999 99999999  9999999999999999999754        566667 68


Q ss_pred             CccceEEEEEeeCCCCCEEEEEECC----CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe
Q 004685           92 HSANVFCTKFVPETSDELVVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (737)
Q Consensus        92 h~~~V~~v~~sp~~~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  167 (737)
                      |..+|.+++|+|+  +.+|++++.+    +.|++||..            ..+..+.+|...|.+++|+|++..++++++
T Consensus       115 ~~~~v~~~~~s~~--~~~l~~~~~~~~~~~~v~~~d~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  180 (615)
T 1pgu_A          115 LAGPISDISWDFE--GRRLCVVGEGRDNFGVFISWDSG------------NSLGEVSGHSQRINACHLKQSRPMRSMTVG  180 (615)
T ss_dssp             CSSCEEEEEECTT--SSEEEEEECCSSCSEEEEETTTC------------CEEEECCSCSSCEEEEEECSSSSCEEEEEE
T ss_pred             ccccEEEEEEeCC--CCEEEEeccCCCCccEEEEEECC------------CcceeeecCCccEEEEEECCCCCcEEEEEe
Confidence            9999999999999  7999999988    789999843            236778899999999999996655899999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCcc---ceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL---SLKSCDISSTRPHLLLVGGSDAFARLYD  244 (737)
Q Consensus       168 ~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~sp~~~~~l~t~s~Dg~i~iwd  244 (737)
                      .|+.|++||+.+.+..                         .....|..   .|.+++|+|+++++|++++.|+.|++||
T Consensus       181 ~d~~v~vwd~~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd  235 (615)
T 1pgu_A          181 DDGSVVFYQGPPFKFS-------------------------ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD  235 (615)
T ss_dssp             TTTEEEEEETTTBEEE-------------------------EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred             CCCcEEEEeCCCccee-------------------------eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence            9999999998776421                         12234555   8999999997358999999999999999


Q ss_pred             CCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeee
Q 004685          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT  319 (737)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~  319 (737)
                      +++++.+..+...                ..+|.. .|.+++|+ ++.+|++++.|+.|++||+.+++.......
T Consensus       236 ~~~~~~~~~~~~~----------------~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  292 (615)
T 1pgu_A          236 GKSGEFLKYIEDD----------------QEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL  292 (615)
T ss_dssp             TTTCCEEEECCBT----------------TBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCEeEEeccc----------------ccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence            9987755443100                002333 59999999 999999999999999999998765444443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.4e-37  Score=333.31  Aligned_cols=220  Identities=13%  Similarity=0.158  Sum_probs=174.7

Q ss_pred             ccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEE--EEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685           39 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAG  115 (737)
Q Consensus        39 ~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~--~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  115 (737)
                      .++......+|...|+||+|+| ++.+||+|+.||.|+|||+.+++...  .+ .+|...|++|+|+|.. +.+|++|+.
T Consensus       108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-~gH~~~V~~l~f~p~~-~~~l~s~s~  185 (435)
T 4e54_B          108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-IGAGGSITGLKFNPLN-TNQFYASSM  185 (435)
T ss_dssp             TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-CSSSCCCCEEEECSSC-TTEEEEECS
T ss_pred             ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-cCCCCCEEEEEEeCCC-CCEEEEEeC
Confidence            3455566778999999999999 67799999999999999998765433  34 5899999999999853 789999999


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      ||+|++||++....        ........+...+.+++|+| ++.+|++|+.||.|++||++...              
T Consensus       186 D~~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~--------------  242 (435)
T 4e54_B          186 EGTTRLQDFKGNIL--------RVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKE--------------  242 (435)
T ss_dssp             SSCEEEEETTSCEE--------EEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCB--------------
T ss_pred             CCEEEEeeccCCce--------eEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcce--------------
Confidence            99999999975221        11122233455688999999 66899999999999999987533              


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                                  +.....|...|.+++|+|++..+|++|+.|+.|++||++..+....+..                 ..
T Consensus       243 ------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~-----------------~~  293 (435)
T 4e54_B          243 ------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY-----------------SL  293 (435)
T ss_dssp             ------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB-----------------CC
T ss_pred             ------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE-----------------ee
Confidence                        2234467889999999998777999999999999999997654332210                 12


Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 004685          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~  313 (737)
                      +|.. .|++++|+|+|.+|++++.||.|++||+.++..
T Consensus       294 ~h~~-~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~  330 (435)
T 4e54_B          294 PHRH-PVNAACFSPDGARLLTTDQKSEIRVYSASQWDC  330 (435)
T ss_dssp             BCSS-CEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred             eccc-cccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence            2333 699999999999999999999999999998653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.5e-36  Score=324.13  Aligned_cols=223  Identities=13%  Similarity=0.166  Sum_probs=177.4

Q ss_pred             ccccccceeecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEE
Q 004685           37 VRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGA  114 (737)
Q Consensus        37 ~~~~~~~~~l~~H~~~V~~l~~s~~g-~~lasgs~dg~V~vwd~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs  114 (737)
                      ...++....+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+. .+|...|.+++|+|+. +.+|++++
T Consensus        60 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~  138 (383)
T 3ei3_B           60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN-TNQLFVSS  138 (383)
T ss_dssp             HTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE-EEEEEEEE
T ss_pred             ccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC-CCEEEEEe
Confidence            35667788999999999999999998 999999999999999999888777663 2699999999999942 68999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                      .|+.|++||+.....        ........|...|.+++|+| ++.+|++++.|+.|++||++...             
T Consensus       139 ~d~~i~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-------------  196 (383)
T 3ei3_B          139 IRGATTLRDFSGSVI--------QVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLDGHE-------------  196 (383)
T ss_dssp             TTTEEEEEETTSCEE--------EEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETTSCE-------------
T ss_pred             CCCEEEEEECCCCce--------EEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECCCCE-------------
Confidence            999999999984211        11222234558899999999 66899999999999999984221             


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (737)
                                   +.....|...|.+++|+|++..+|++++.|+.|++||+++.+....+         ...        
T Consensus       197 -------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------~~~--------  246 (383)
T 3ei3_B          197 -------------IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY---------IAE--------  246 (383)
T ss_dssp             -------------EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE---------EEE--------
T ss_pred             -------------EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce---------EEE--------
Confidence                         12223567889999999985449999999999999999974421111         111        


Q ss_pred             CCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc
Q 004685          275 HGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGG  313 (737)
Q Consensus       275 ~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~~~  313 (737)
                      .+|.. .|.+++|+| ++.+|++++.|+.|++||+.++..
T Consensus       247 ~~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          247 MPHEK-PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             EECSS-CEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             ecCCC-ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            11222 699999999 999999999999999999998653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-35  Score=312.06  Aligned_cols=223  Identities=17%  Similarity=0.276  Sum_probs=177.8

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      ......|.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|+|+  +.+|++++.||.|
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~dg~i   98 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCF--TKYCVTGSADYSI   98 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEE
T ss_pred             ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCC--CCEEEEEeCCCeE
Confidence            3445678999999999999999999999999999999999999999998 789999999999998  7999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCCCCCCCCCCCCccc
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                      ++||+....          .+..+. +...|.+++|+| ++.++++++.+     +.|.+||+...............  
T Consensus        99 ~iwd~~~~~----------~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~--  164 (369)
T 3zwl_B           99 KLWDVSNGQ----------CVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE--  164 (369)
T ss_dssp             EEEETTTCC----------EEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS--
T ss_pred             EEEECCCCc----------EEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc--
Confidence            999998633          244454 888999999999 66888899998     99999999887643111110000  


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCcccccccccc
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLS  273 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (737)
                               ....+. .......+.+++|+|+ +++|++++.||.|++||+++ ...+..+                   
T Consensus       165 ---------~~~~~~-~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------  214 (369)
T 3zwl_B          165 ---------PIHKII-THEGLDAATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYEYVDSI-------------------  214 (369)
T ss_dssp             ---------CSEEEE-CCTTCCCEEEEEECGG-GCEEEEEETTSEEEEEETTTTTEEEEEE-------------------
T ss_pred             ---------eeeecc-CCcCccceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcEeEEEE-------------------
Confidence                     001111 1112238999999997 58999999999999999987 3333222                   


Q ss_pred             CCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       274 ~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                       ..|.. .|.+++|+|++.+|++++.|+.|++||+.++
T Consensus       215 -~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          215 -DLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             -ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             -ecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence             11222 5999999999999999999999999998874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=358.81  Aligned_cols=232  Identities=10%  Similarity=0.076  Sum_probs=176.1

Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (737)
Q Consensus        47 ~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~  126 (737)
                      .||.+.|++++|+|++++||+|+.||.|+|||..+.+....+  .|..+|.+++|+|.   .+|++++.|++|++||+..
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fspg---~~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVKG---IYLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEETT---TEEEEEETTCEEEEEETTT
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcCC---CEEEEEECcCeEEEEECCC
Confidence            489999999999999999999999999999999888776554  48889999999993   6999999999999999986


Q ss_pred             CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (737)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (737)
                      ..          .+..+. |...|++++|+| ++.+|++|+.||.|++||++++...             -+..  ....
T Consensus        89 ~~----------~~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~-------------~~~i--~~~~  141 (902)
T 2oaj_A           89 QK----------VLTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLS-------------SFKL--DNLQ  141 (902)
T ss_dssp             CS----------EEEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEE-------------EEEE--CCHH
T ss_pred             Cc----------EEEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccc-------------ccee--cccc
Confidence            32          244554 778999999999 6689999999999999999876421             0000  0000


Q ss_pred             ec-cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004685          207 SL-ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (737)
Q Consensus       207 ~~-~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  285 (737)
                      .. .....|...|.+++|+|+++..+++|+.|+.| +||+++.+.+..+.....+....... .. .. ..++...|+++
T Consensus       142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~-~~-~~-~~~h~~~V~~v  217 (902)
T 2oaj_A          142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDF-SE-KT-NEKRTPKVIQS  217 (902)
T ss_dssp             HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTT-CC-CT-TSCBCCCEEEE
T ss_pred             ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccc-cc-cc-ccccCCCeEEE
Confidence            00 23456788999999999766799999999999 99999887665553221110000000 00 00 11222369999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 004685          286 TFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (737)
Q Consensus       286 ~~sp~g~~l~~g~~dg~v~iwd~~~~~~~  314 (737)
                      +|+|+|.+|++|+.||.|++||+.+++..
T Consensus       218 ~fspdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          218 LYHPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             EECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            99999999999999999999999987643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8.5e-36  Score=368.95  Aligned_cols=261  Identities=18%  Similarity=0.196  Sum_probs=209.7

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      .....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+ .+|...|.+++|+|+  +.+|++|+.|+.|+
T Consensus       606 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~  682 (1249)
T 3sfz_A          606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSD--DSYIATCSADKKVK  682 (1249)
T ss_dssp             CCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEE
T ss_pred             cceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe-ccCCCCEEEEEEecC--CCEEEEEeCCCeEE
Confidence            344578899999999999999999999999999999999999999999 799999999999999  79999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC-CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      +||+.++          +.+..+.+|...|.+++|+|+ +..++++|+.|+.|++||++++..                 
T Consensus       683 vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-----------------  735 (1249)
T 3sfz_A          683 IWDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-----------------  735 (1249)
T ss_dssp             EEETTTC----------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-----------------
T ss_pred             EEECCCC----------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-----------------
Confidence            9999863          236778899999999999985 345899999999999999988752                 


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC-------------CCCCccc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-------------PPPCVNY  266 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~  266 (737)
                              +.....|...|.+++|+|+ +.++++++.||.|++||++++.....+.....             ...++ .
T Consensus       736 --------~~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~  805 (1249)
T 3sfz_A          736 --------RNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC-S  805 (1249)
T ss_dssp             --------EEEECCCSSCEEEEEECSS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC-C
T ss_pred             --------hheecCCCCCEEEEEEecC-CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE-E
Confidence                    2223357789999999997 58999999999999999987764433321110             00000 0


Q ss_pred             cccc-----------------------cccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCC
Q 004685          267 FCPM-----------------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA  323 (737)
Q Consensus       267 ~~~~-----------------------~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~  323 (737)
                      +.+.                       .....+|. ..|.+++|+|++.++++++.||.|++||+.++.......++...
T Consensus       806 ~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~  884 (1249)
T 3sfz_A          806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW  884 (1249)
T ss_dssp             BCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS-SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred             ECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCC-CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence            0000                       00001333 36999999999999999999999999999998877778888999


Q ss_pred             CeeeeeccCCCCccCCCCC
Q 004685          324 SKIMSFTPTLNGLELQPPI  342 (737)
Q Consensus       324 ~~~~~~~p~~~~~~~~~~~  342 (737)
                      +..++|+|+...+......
T Consensus       885 v~~v~~spdg~~l~s~s~d  903 (1249)
T 3sfz_A          885 VHGVMFSPDGSSFLTASDD  903 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEeCC
Confidence            9999999987766554443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-35  Score=308.11  Aligned_cols=168  Identities=16%  Similarity=0.221  Sum_probs=138.8

Q ss_pred             EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (737)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  163 (737)
                      ...++ .+|...|.+++|+|+  +.+|++|+.||.|++||+....          .+..+..|..+|.+++|+| ++++|
T Consensus         5 ~~~~~-~~h~~~V~~~~fsp~--~~~l~s~~~dg~v~lWd~~~~~----------~~~~~~~~~~~v~~~~~~~-~~~~l   70 (304)
T 2ynn_A            5 IKKTF-SNRSDRVKGIDFHPT--EPWVLTTLYSGRVELWNYETQV----------EVRSIQVTETPVRAGKFIA-RKNWI   70 (304)
T ss_dssp             CEEEE-EEECSCEEEEEECSS--SSEEEEEETTSEEEEEETTTTE----------EEEEEECCSSCEEEEEEEG-GGTEE
T ss_pred             eEEee-cCCCCceEEEEECCC--CCEEEEEcCCCcEEEEECCCCc----------eeEEeeccCCcEEEEEEeC-CCCEE
Confidence            44566 789999999999999  7999999999999999998632          2677888999999999999 66899


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw  243 (737)
                      ++|+.|++|++||+.+++.                         +.....|...|.+++|+|+ +.+|++|+.|+.|++|
T Consensus        71 ~s~s~d~~i~vwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lW  124 (304)
T 2ynn_A           71 IVGSDDFRIRVFNYNTGEK-------------------------VVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLW  124 (304)
T ss_dssp             EEEETTSEEEEEETTTCCE-------------------------EEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEE
T ss_pred             EEECCCCEEEEEECCCCcE-------------------------EEEEeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEE
Confidence            9999999999999988752                         2223457889999999997 5899999999999999


Q ss_pred             ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 004685          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      |+++.......                 +  .+|.. .|.+++|+| ++.+|++|+.|+.|++||+.+.
T Consensus       125 d~~~~~~~~~~-----------------~--~~h~~-~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~  173 (304)
T 2ynn_A          125 NWENNWALEQT-----------------F--EGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS  173 (304)
T ss_dssp             EGGGTTEEEEE-----------------E--CCCCS-CEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred             ECCCCcchhhh-----------------h--cccCC-cEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence            99865322110                 0  22333 599999999 6789999999999999998763

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-35  Score=319.99  Aligned_cols=231  Identities=16%  Similarity=0.150  Sum_probs=175.2

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------EEEEEcccCccceEEEEEeeC--CCC---CE
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPE--TSD---EL  109 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~------~~~~~~~~h~~~V~~v~~sp~--~~~---~~  109 (737)
                      +....+++|.++|++++|+|  ++|++|+.||.|+|||+.+++      .+..+ .+|...|.+++|+|+  .++   .+
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccE
Confidence            45677889999999999998  899999999999999999887      67777 689999999999997  115   79


Q ss_pred             EEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccC-----CCceeEEEEe----cCCCcE-EEEEeCCCcEEEEEcCC
Q 004685          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-----TRRVKKLAVE----VGNPHV-VWSASEDGTLRQHDFRQ  179 (737)
Q Consensus       110 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~----p~~~~~-l~s~s~Dg~I~vwdl~~  179 (737)
                      |++++.||.|++|++.......     ......+..|     ...|.+++|+    | ++.+ |++++.||.|++||++.
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETK-----KVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTC-----CEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred             EEEEcCCCCEEEEEccCCcccc-----cccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCc
Confidence            9999999999999998643210     0114566777     5899999999    8 5577 99999999999999998


Q ss_pred             ------CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004685          180 ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (737)
Q Consensus       180 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~  253 (737)
                            ...+...      ....+..       .+.....|...+.+++|+|+ + +|++++.|+.|++||+++.+.+..
T Consensus       158 ~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~  222 (397)
T 1sq9_A          158 FADESNSLTLNWS------PTLELQG-------TVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYN  222 (397)
T ss_dssp             SSSHHHHTTTCCC------CEEEEEE-------EECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred             cccccccceeecc------Ccceeee-------eeccccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeEE
Confidence                  4432100      0000000       01111346678999999997 5 999999999999999998765544


Q ss_pred             ccCCCCCCCCccccccccccCCCC--cccceeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCC
Q 004685          254 CQKRMSPPPCVNYFCPMHLSEHGR--SSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHAG  312 (737)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~sp~g~~l~~g~~d---g~v~iwd~~~~~  312 (737)
                      +...                 .+|  ....|.+++|+|++.+|++++.|   +.|++||+.+++
T Consensus       223 ~~~~-----------------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~  269 (397)
T 1sq9_A          223 FESQ-----------------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE  269 (397)
T ss_dssp             EECC-----------------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             Eecc-----------------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence            3210                 012  02369999999999999999999   999999998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-35  Score=304.60  Aligned_cols=210  Identities=20%  Similarity=0.220  Sum_probs=172.1

Q ss_pred             cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (737)
Q Consensus        38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  117 (737)
                      ...++..+|.+|.+.|++++| |++++|++|+.||.|++||+.+++....+ ..|...|.+++|+|+  +.+|++++.||
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~dg   81 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDSE--KELLLFGGKDT   81 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEETT--TTEEEEEETTS
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECCC--CCEEEEecCCC
Confidence            345778899999999999999 99999999999999999999999888888 789999999999999  79999999999


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      .|++|++......       ++...+..|...|.++.|+   +.++++++.|+.|++||  ...                
T Consensus        82 ~i~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~----------------  133 (313)
T 3odt_A           82 MINGVPLFATSGE-------DPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGS----------------  133 (313)
T ss_dssp             CEEEEETTCCTTS-------CC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTE----------------
T ss_pred             eEEEEEeeecCCC-------CcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCc----------------
Confidence            9999999864321       3467788899999999994   36899999999999999  221                


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (737)
                               .+.....|...+.+++|+|.+++++++++.|+.|++||...  ....+                    ...
T Consensus       134 ---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~--------------------~~~  182 (313)
T 3odt_A          134 ---------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTF--------------------SGI  182 (313)
T ss_dssp             ---------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--EEEEE--------------------CSS
T ss_pred             ---------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--eEEEE--------------------ecc
Confidence                     11122346778999999995578999999999999999432  11111                    111


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       278 ~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ....|.+++|+|++. +++++.||.|++||+.++
T Consensus       183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~  215 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG  215 (313)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred             CcccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence            223699999999998 999999999999998763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-36  Score=330.49  Aligned_cols=245  Identities=13%  Similarity=0.176  Sum_probs=176.6

Q ss_pred             cccccceee-cccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC---Ce---EEEEEcccCccceEEEEEeeCCCCCE
Q 004685           38 RRLSQEREL-EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS---RK---LLHSIETGHSANVFCTKFVPETSDEL  109 (737)
Q Consensus        38 ~~~~~~~~l-~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~---~~---~~~~~~~~h~~~V~~v~~sp~~~~~~  109 (737)
                      .+.+++.++ ++|.+.|++++|+| ++++||+|+.||.|+|||+.+   +.   ....+  .|...|.+++|+|+  +.+
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~--~~~  125 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPN--FDA  125 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTT--SSE
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCC--CCE
Confidence            345677788 89999999999999 999999999999999999876   43   22333  58999999999998  799


Q ss_pred             EEEEECCCcEEEEecCCC-CCCCCCCCCCCCceee--cc--CCCceeEEE--EecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          110 VVSGAGDAEVRLFNLSRF-SGRGLDDNAITPSALY--QC--HTRRVKKLA--VEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       110 l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~--~~--h~~~v~~l~--~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                      |++|+.||.|++||+... .+..........+..+  ..  +...+.++.  +++ ++.+|++++.|+.|++||+++++.
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~  204 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLER  204 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCee
Confidence            999999999999999521 1111000000001111  11  456677777  445 568999999999999999988753


Q ss_pred             CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCC
Q 004685          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (737)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (737)
                      .           .            ....+.|...|++++|+|+ +.+|++|+.||.|++||+++++.+..+.       
T Consensus       205 ~-----------~------------~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------  253 (437)
T 3gre_A          205 L-----------Q------------IIENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSWS-------  253 (437)
T ss_dssp             E-----------E------------EEECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEEB-------
T ss_pred             e-----------E------------EEccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEEe-------
Confidence            2           0            1111125678999999997 6899999999999999999876554432       


Q ss_pred             CccccccccccCCCCcccceeEEEEcC----CCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004685          263 CVNYFCPMHLSEHGRSSLHLTHVTFSP----NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (737)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp----~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (737)
                                  ..+.. .|++++|+|    ++.+|++|+.||.|++||+.+++....+..+...+..+.|+|
T Consensus       254 ------------~~~~~-~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  313 (437)
T 3gre_A          254 ------------FGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP  313 (437)
T ss_dssp             ------------CTTCE-EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred             ------------cCCCC-ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence                        11222 599996664    688999999999999999998765554444443333333333

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.3e-36  Score=312.51  Aligned_cols=267  Identities=16%  Similarity=0.187  Sum_probs=222.4

Q ss_pred             EEEcccCccceEEEEEeeCC--CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685           86 HSIETGHSANVFCTKFVPET--SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (737)
Q Consensus        86 ~~~~~~h~~~V~~v~~sp~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  163 (737)
                      ..+ .+|...|.+++|+|+.  ++.+|++|+.|++|++|++.....        .....+.+|...|.+++|++ +..++
T Consensus        26 ~~~-~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~--------~~~~~l~gh~~~v~~~~~~~-~~~~l   95 (321)
T 3ow8_A           26 KQE-QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL--------DLQWSLEGHQLGVVSVDISH-TLPIA   95 (321)
T ss_dssp             EET-TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE--------EEEEEECCCSSCEEEEEECS-SSSEE
T ss_pred             eec-ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe--------eeeeeeccCCCCEEEEEECC-CCCEE
Confidence            344 6899999999999852  257999999999999999875321        12456789999999999999 56899


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw  243 (737)
                      ++++.|++|++||+.+++.+                         .....+...+.+++|+|+ +++|++++.|+.|++|
T Consensus        96 ~s~s~D~~i~lWd~~~~~~~-------------------------~~~~~~~~~~~~~~~spd-g~~l~~g~~dg~v~i~  149 (321)
T 3ow8_A           96 ASSSLDAHIRLWDLENGKQI-------------------------KSIDAGPVDAWTLAFSPD-SQYLATGTHVGKVNIF  149 (321)
T ss_dssp             EEEETTSEEEEEETTTTEEE-------------------------EEEECCTTCCCCEEECTT-SSEEEEECTTSEEEEE
T ss_pred             EEEeCCCcEEEEECCCCCEE-------------------------EEEeCCCccEEEEEECCC-CCEEEEEcCCCcEEEE
Confidence            99999999999999887522                         111234556788999997 6899999999999999


Q ss_pred             ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCC
Q 004685          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA  323 (737)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~  323 (737)
                      |+++++....+.                    .+. ..|.+++|+|+|++|++|+.||.|++||+.+++           
T Consensus       150 ~~~~~~~~~~~~--------------------~~~-~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-----------  197 (321)
T 3ow8_A          150 GVESGKKEYSLD--------------------TRG-KFILSIAYSPDGKYLASGAIDGIINIFDIATGK-----------  197 (321)
T ss_dssp             ETTTCSEEEEEE--------------------CSS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------
T ss_pred             EcCCCceeEEec--------------------CCC-ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----------
Confidence            999876443321                    121 259999999999999999999999999987632           


Q ss_pred             CeeeeeccCCCCccCCCCCCCcccccccccccccccccchhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcch
Q 004685          324 SKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR  403 (737)
Q Consensus       324 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  403 (737)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (321)
T 3ow8_A          198 --------------------------------------------------------------------------------  197 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccchhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHHHH
Q 004685          404 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN  483 (737)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (737)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (321)
T 3ow8_A          198 --------------------------------------------------------------------------------  197 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhcCCCCCCCCCCCCCCcCccccccccccccccCCCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCCccc
Q 004685          484 IKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDV  563 (737)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (737)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (321)
T 3ow8_A          198 --------------------------------------------------------------------------------  197 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccceeeeccCCCCccccccCCCCCCCCCCCCCCCCCCCCccccccceEEEeeecccccceeeeecccCCCCEEE
Q 004685          564 EANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIA  643 (737)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~  643 (737)
                                                                         ..+.+.+|...++++.    |+||+++|+
T Consensus       198 ---------------------------------------------------~~~~~~~h~~~v~~l~----~spd~~~l~  222 (321)
T 3ow8_A          198 ---------------------------------------------------LLHTLEGHAMPIRSLT----FSPDSQLLV  222 (321)
T ss_dssp             ---------------------------------------------------EEEEECCCSSCCCEEE----ECTTSCEEE
T ss_pred             ---------------------------------------------------EEEEEcccCCceeEEE----EcCCCCEEE
Confidence                                                               1124667777787776    899999999


Q ss_pred             EecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCCCCCCCh
Q 004685          644 SGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT  715 (737)
Q Consensus       644 sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~  715 (737)
                      +|+.|++|+|||+++++++..|.+|.+.|++++|+|++++|+|++.||+|+|||+.+++++.++.+|.+++.
T Consensus       223 s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~  294 (321)
T 3ow8_A          223 TASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW  294 (321)
T ss_dssp             EECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             EEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999998875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2e-35  Score=319.98  Aligned_cols=186  Identities=16%  Similarity=0.201  Sum_probs=158.4

Q ss_pred             EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004685           86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  165 (737)
Q Consensus        86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  165 (737)
                      ..+ .+|..+|++++|+|+  +.+|++|+.||+|++||+....          ....+.+|...|.+++|+| ++.+|++
T Consensus       102 ~~l-~gh~~~V~~~~~~p~--~~~l~s~s~Dg~i~vwd~~~~~----------~~~~l~~h~~~V~~v~~~~-~~~~l~s  167 (410)
T 1vyh_C          102 YAL-SGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETGD----------FERTLKGHTDSVQDISFDH-SGKLLAS  167 (410)
T ss_dssp             CEE-ECCSSCEEEEEECSS--SSEEEEEESSSCEEEEETTTCC----------CCEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred             Eee-cccCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCc----------EEEEEeccCCcEEEEEEcC-CCCEEEE
Confidence            345 689999999999999  7999999999999999998632          3678889999999999999 6689999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~  245 (737)
                      |+.|++|++||+.+.+.                         +.....|...|.+++|+|+ +++|++|+.|+.|++||+
T Consensus       168 gs~D~~i~iwd~~~~~~-------------------------~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~  221 (410)
T 1vyh_C          168 CSADMTIKLWDFQGFEC-------------------------IRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEV  221 (410)
T ss_dssp             EETTSCCCEEETTSSCE-------------------------EECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET
T ss_pred             EeCCCeEEEEeCCCCce-------------------------eEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEC
Confidence            99999999999987642                         3344567889999999997 589999999999999999


Q ss_pred             CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCe
Q 004685          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK  325 (737)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~  325 (737)
                      +++..+..+                    .+|.. .|.+++|+|++.+|++|+.|+.|++||+.++.....+..+...+.
T Consensus       222 ~~~~~~~~~--------------------~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~  280 (410)
T 1vyh_C          222 QTGYCVKTF--------------------TGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE  280 (410)
T ss_dssp             TTCCEEEEE--------------------ECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             CCCcEEEEE--------------------eCCCc-cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEE
Confidence            987654433                    22333 599999999999999999999999999999877777777888888


Q ss_pred             eeeeccC
Q 004685          326 IMSFTPT  332 (737)
Q Consensus       326 ~~~~~p~  332 (737)
                      .++|+|.
T Consensus       281 ~~~~~~~  287 (410)
T 1vyh_C          281 CISWAPE  287 (410)
T ss_dssp             EEEECCS
T ss_pred             EEEEcCc
Confidence            8888884

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.9e-35  Score=311.05  Aligned_cols=231  Identities=12%  Similarity=0.187  Sum_probs=171.4

Q ss_pred             eecccCCceEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeEEEEEc----ccCccceEEEEEeeCCC--CCEEEEEE
Q 004685           45 ELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETS--DELVVSGA  114 (737)
Q Consensus        45 ~l~~H~~~V~~l~~s~~----g~~lasgs~dg~V~vwd~~~~~~~~~~~----~~h~~~V~~v~~sp~~~--~~~l~sgs  114 (737)
                      ...+|.++|++++|+|+    ...+++++.++.|++||+.+++.+..+.    ..|...|.+++|+|+..  +.+|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999984    4566666667799999999887666552    12567899999999842  35899999


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccc
Q 004685          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (737)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~  194 (737)
                      .||.|++||+...          +.+..+.+|...|.+++|+|.++.+|++++.||.|++||+++++..           
T Consensus        93 ~dg~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------  151 (366)
T 3k26_A           93 SRGIIRIINPITM----------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV-----------  151 (366)
T ss_dssp             TTCEEEEECTTTC----------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE-----------
T ss_pred             CCCEEEEEEchhc----------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE-----------
Confidence            9999999999863          2367788899999999999966789999999999999999876522           


Q ss_pred             eEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCC--CCCCCc------cc
Q 004685          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM--SPPPCV------NY  266 (737)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~--~~~~~~------~~  266 (737)
                                 ..+.....|...|.+++|+|+ +.+|++++.|+.|++||+++++....+....  .+....      ..
T Consensus       152 -----------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          152 -----------AIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             -----------EEECSTTSCSSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             -----------EEecccccccCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence                       112223467889999999997 6899999999999999999776443332100  000000      00


Q ss_pred             cccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       267 ~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ..+......+|.. .|.+++|+  +++|++++.|+.|++||+.+.
T Consensus       220 ~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          220 HFPDFSTRDIHRN-YVDCVRWL--GDLILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             CCCSEEECSSCSS-CCCEEEEE--TTEEEEECSSSEEEEEEESST
T ss_pred             ccCccccccCCcc-eEEEEEEc--CCEEEEEecCCEEEEEeCCCc
Confidence            0000000112333 69999998  779999999999999999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=313.52  Aligned_cols=214  Identities=13%  Similarity=0.158  Sum_probs=166.3

Q ss_pred             ceeecccCCceEEEEEcCCCC-EEEEEeC---CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC-CCCEEEEEECCC
Q 004685           43 ERELEGHQGCVNAISWNSKGS-LLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDA  117 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~~g~-~lasgs~---dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~~l~sgs~dg  117 (737)
                      .+.+++|.+.|++++|+|++. ++++|+.   |+.|+|||+.+++.......+|...|.+++|+|+. ++.+|++|+.||
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            345678999999999999986 4556665   99999999999887655545799999999999982 148999999999


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEE------ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCC
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV------EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  191 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~  191 (737)
                      .|++||+....         .++..+.+|...|.++.|      +| ++.+|++++.|+.|++||++.+....       
T Consensus        91 ~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~-------  153 (357)
T 3i2n_A           91 NLHIWNLEAPE---------MPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPV-------  153 (357)
T ss_dssp             CEEEECTTSCS---------SCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCS-------
T ss_pred             eEEEEeCCCCC---------ccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcc-------
Confidence            99999998643         136778899999999966      45 56799999999999999999875220       


Q ss_pred             ccceEEEeccCCceeeccCCCC-CccceEEEE----EecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccc
Q 004685          192 ECRNILLDLRCGAKRSLADPPK-QTLSLKSCD----ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (737)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~----~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (737)
                                    ..+..... ....+.+++    |+|+ +.+|++++.|+.|++||+++.+.....            
T Consensus       154 --------------~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~------------  206 (357)
T 3i2n_A          154 --------------ANMEPVQGENKRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMALRWET------------  206 (357)
T ss_dssp             --------------EEECCCTTSCCCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTEEEEEE------------
T ss_pred             --------------eeccccCCCCCCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECccCceeeec------------
Confidence                          01111111 134678887    6776 689999999999999999976532211            


Q ss_pred             cccccccCCCCcccceeEEEEcC---CCCEEEEEeCCCeEEEEEcCC
Q 004685          267 FCPMHLSEHGRSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       267 ~~~~~~~~~~~~~~~i~~v~~sp---~g~~l~~g~~dg~v~iwd~~~  310 (737)
                               .+. ..|.+++|+|   ++.+|++++.||.|++||+.+
T Consensus       207 ---------~~~-~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          207 ---------NIK-NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             ---------ECS-SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             ---------CCC-CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence                     122 2599999999   999999999999999999886

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.5e-35  Score=338.92  Aligned_cols=215  Identities=19%  Similarity=0.248  Sum_probs=177.2

Q ss_pred             cccceeecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-----eEEEEEcccCccceEEEEEeeCCCCCEEEEE
Q 004685           40 LSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSG  113 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg  113 (737)
                      .+....+++|.+.|++|+|+|+ +++|+||+.|++|+|||+.+.     .....+ .+|...|.+++|+|+  +.+|++|
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~--g~~l~sg  448 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSD--GQFALSG  448 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTT--SSEEEEE
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCC--CCEEEEE
Confidence            4555679999999999999986 479999999999999999763     344556 799999999999999  7999999


Q ss_pred             ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (737)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~  193 (737)
                      +.|+.|+|||+....          ....+.+|...|.+++|+| ++.+|++|+.|++|++||+......          
T Consensus       449 s~Dg~v~vwd~~~~~----------~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~----------  507 (694)
T 3dm0_A          449 SWDGELRLWDLAAGV----------STRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKY----------  507 (694)
T ss_dssp             ETTSEEEEEETTTTE----------EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEE----------
T ss_pred             eCCCcEEEEECCCCc----------ceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcce----------
Confidence            999999999998632          2567889999999999999 5688899999999999997543210          


Q ss_pred             ceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccc
Q 004685          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (737)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (737)
                                  ........|...|.+++|+|+. ...+++++.|+.|++||++..+....+                  
T Consensus       508 ------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~------------------  557 (694)
T 3dm0_A          508 ------------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL------------------  557 (694)
T ss_dssp             ------------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE------------------
T ss_pred             ------------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE------------------
Confidence                        0112234577889999999974 258999999999999999876544332                  


Q ss_pred             cCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       273 ~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                        .+|.. .|++++|+|++++|++|+.||.|++||+.++
T Consensus       558 --~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          558 --AGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEG  593 (694)
T ss_dssp             --CCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred             --cCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence              23443 6999999999999999999999999999874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-36  Score=323.88  Aligned_cols=221  Identities=16%  Similarity=0.293  Sum_probs=171.7

Q ss_pred             CCceEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCe---EEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685           50 QGCVNAISWNSKGS-LLISG----------SDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (737)
Q Consensus        50 ~~~V~~l~~s~~g~-~lasg----------s~dg~V~vwd~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  115 (737)
                      ...|.+++|+|+++ +|++|          +.|+.|+|||+.+++   .+..+  .|...|.+++|+|+  +.+|++|+.
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~--~~~l~~~~~   87 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHN--NKIIAGALD   87 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSS--SSCEEEEES
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCC--CCeEEEEcc
Confidence            35789999999987 99999          899999999999875   33333  58899999999999  799999999


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      ||.|++||+......      ......+.+|...|++++|+|+++.+|++++.|+.|++||+.+........        
T Consensus        88 dg~v~vw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------  153 (416)
T 2pm9_A           88 NGSLELYSTNEANNA------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY--------  153 (416)
T ss_dssp             SSCEEEECCSSTTSC------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC--------
T ss_pred             CCeEEEeeccccccc------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc--------
Confidence            999999999862211      123677888999999999999657899999999999999998875210000        


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                              ....+.....|...+.+++|+|+++.+|++++.|+.|++||+++.+.+..+.....              ..
T Consensus       154 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------~~  211 (416)
T 2pm9_A          154 --------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSP--------------NS  211 (416)
T ss_dssp             --------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCC--------------SS
T ss_pred             --------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccc--------------cc
Confidence                    00111223457788999999998668999999999999999998765544421100              01


Q ss_pred             CCcccceeEEEEcCCC-CEEEEEeCCC---eEEEEEcCCC
Q 004685          276 GRSSLHLTHVTFSPNG-EEVLLSYSGE---HVYLMDVNHA  311 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g-~~l~~g~~dg---~v~iwd~~~~  311 (737)
                      +| ...|.+++|+|++ .+|++++.|+   .|++||+.++
T Consensus       212 ~~-~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~  250 (416)
T 2pm9_A          212 GI-KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA  250 (416)
T ss_dssp             CC-CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred             cc-CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence            11 2369999999997 6899999998   9999998873

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.4e-35  Score=314.47  Aligned_cols=224  Identities=15%  Similarity=0.163  Sum_probs=173.5

Q ss_pred             ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004685           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (737)
Q Consensus        46 l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd  123 (737)
                      +..|.++|++++|+|++++|++|+.|+.|++||+.+++  .+..+ .+|...|.+++|+|+  +.+|++++.||.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT--TTEEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCC--CCEEEEEcCCCeEEEEE
Confidence            44599999999999999999999999999999999987  77778 789999999999998  79999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (737)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (737)
                      +.....        .....+..|...|.+++|+| ++.+|++++.|+.|++||++.....           ..       
T Consensus        81 ~~~~~~--------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~-----------~~-------  133 (372)
T 1k8k_C           81 LKGRTW--------KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW-----------WV-------  133 (372)
T ss_dssp             EETTEE--------EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE-----------EE-------
T ss_pred             CCCCee--------eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcc-----------ee-------
Confidence            975321        11334467899999999999 5689999999999999999876521           00       


Q ss_pred             ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC-----CCCCCCccccccccccCCCCc
Q 004685          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR-----MSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  278 (737)
                         .......|...|.+++|+|+ +++|++++.|+.|++||++...........     .....+...+       .+|.
T Consensus       134 ---~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  202 (372)
T 1k8k_C          134 ---CKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-------SSSC  202 (372)
T ss_dssp             ---EEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-------CCCS
T ss_pred             ---eeeeecccCCCeeEEEEcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec-------CCCC
Confidence               01112346778999999997 589999999999999998643211100000     0000111111       1233


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      . .|.+++|+|++++|++++.|+.|++||+.++
T Consensus       203 ~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          203 G-WVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             S-CEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             C-eEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            3 6999999999999999999999999998863

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-36  Score=354.84  Aligned_cols=300  Identities=11%  Similarity=0.011  Sum_probs=195.4

Q ss_pred             CCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-----------EEEc
Q 004685           21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-----------HSIE   89 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~-----------~~~~   89 (737)
                      ..+.+.+++|++|+  +.+.+.+.++. |.+.|++++|+|++++|++|+.||.|++||+.+++..           ..+ 
T Consensus        72 L~S~s~D~~v~lWd--~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~-  147 (902)
T 2oaj_A           72 LVVINAKDTVYVLS--LYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFP-  147 (902)
T ss_dssp             EEEEETTCEEEEEE--TTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCS-
T ss_pred             EEEEECcCeEEEEE--CCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccc-
Confidence            34556789999999  44556677775 7789999999999999999999999999999988754           122 


Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee------------------ccCCCcee
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY------------------QCHTRRVK  151 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~------------------~~h~~~v~  151 (737)
                      .+|..+|.+++|+|+. +..|++|+.||.| +||++....          ...+                  ..|...|+
T Consensus       148 ~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~----------~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~  215 (902)
T 2oaj_A          148 AARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEI----------KQSFIYELPPFAPGGDFSEKTNEKRTPKVI  215 (902)
T ss_dssp             SSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEE----------EEEECCCBCTTCCCSTTCCCTTSCBCCCEE
T ss_pred             ccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCce----------EEEEecccCCcCCCcccccccccccCCCeE
Confidence            5688999999999963 5789999999999 999986321          2223                  23467899


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC--CC--CCC-------------C-ccceEEEecc------------
Q 004685          152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP--AG--SSH-------------Q-ECRNILLDLR------------  201 (737)
Q Consensus       152 ~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~--~~--~~~-------------~-~~~~~~~~~~------------  201 (737)
                      +++|+| ++.+|++++.||+|++||+++++.+..  ..  ..+             . ....+.|...            
T Consensus       216 ~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg  294 (902)
T 2oaj_A          216 QSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH  294 (902)
T ss_dssp             EEEECT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred             EEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeC
Confidence            999999 578999999999999999988764321  00  001             1 0111112100            


Q ss_pred             --C-----Cceeecc--------------------------C-CCCCccceEEEEEec---------CCCcEEEEEeCCC
Q 004685          202 --C-----GAKRSLA--------------------------D-PPKQTLSLKSCDISS---------TRPHLLLVGGSDA  238 (737)
Q Consensus       202 --~-----~~~~~~~--------------------------~-~~~~~~~v~~i~~sp---------~~~~~l~t~s~Dg  238 (737)
                        .     .....+.                          . ...+...+.++.+.+         .++..+++++.|+
T Consensus       295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg  374 (902)
T 2oaj_A          295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG  374 (902)
T ss_dssp             ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTS
T ss_pred             CCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCC
Confidence              0     0000000                          0 001234556666654         1234778888889


Q ss_pred             cEEEEECCCCCCccc-------ccCCCCCCCCcc----------------ccccccccCCCCcccceeEEEEcCCCCEEE
Q 004685          239 FARLYDRRMLPPLTS-------CQKRMSPPPCVN----------------YFCPMHLSEHGRSSLHLTHVTFSPNGEEVL  295 (737)
Q Consensus       239 ~i~iwd~~~~~~~~~-------~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~  295 (737)
                      .|++||+.++.....       +.....+..++.                ......+  .+|.. .+.+++|+|++++|+
T Consensus       375 ~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l--~G~~~-~v~sv~~spdg~~la  451 (902)
T 2oaj_A          375 EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLL--KGGVR-TKRQKLPAEYGTAFI  451 (902)
T ss_dssp             CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSC--CCSBC-CCCCCCCCSEEEEEE
T ss_pred             cEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcc--cCCcC-CCCcccccccCcEEE
Confidence            999999866542211       000000000000                0000011  22332 467788999999999


Q ss_pred             EEeCCCeEEEEEcCCCCcce--eee---------ecCCCCeeeeeccCCCCccCCC
Q 004685          296 LSYSGEHVYLMDVNHAGGRA--MRY---------TVGDASKIMSFTPTLNGLELQP  340 (737)
Q Consensus       296 ~g~~dg~v~iwd~~~~~~~~--~~~---------~~~~~~~~~~~~p~~~~~~~~~  340 (737)
                      +|+.|++|++||+.++....  .+.         ++...+..++|+|+.+.++...
T Consensus       452 Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs  507 (902)
T 2oaj_A          452 TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI  507 (902)
T ss_dssp             EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE
T ss_pred             EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe
Confidence            99999999999999874221  111         4566788899999876555543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-34  Score=303.98  Aligned_cols=207  Identities=18%  Similarity=0.270  Sum_probs=170.5

Q ss_pred             eecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE---EEc-ccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH---SIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        45 ~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~---~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      ...+|.+.|++++|+|++++|++++ ||.|++||+.+++...   .+. ..|...|.+++|+|+  +.+|++++.|+.|+
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~  122 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLS  122 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC--CCEEEEEcCCCcEE
Confidence            3347999999999999999999999 9999999998765322   220 278999999999999  79999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      +||+.....        .....+..|...|.+++|+| ++.+|++++.|+.|++||+++++.                  
T Consensus       123 ~~d~~~~~~--------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~------------------  175 (337)
T 1gxr_A          123 IWDLAAPTP--------RIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTL------------------  175 (337)
T ss_dssp             EEECCCC----------EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE------------------
T ss_pred             EEECCCCCc--------ceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCce------------------
Confidence            999986432        12566778999999999999 668999999999999999987652                  


Q ss_pred             cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (737)
                             +.....|...+.+++|+|+ +++|++++.|+.|++||+++++.+..+.                     + ..
T Consensus       176 -------~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~---------------------~-~~  225 (337)
T 1gxr_A          176 -------VRQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQQHD---------------------F-TS  225 (337)
T ss_dssp             -------EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEE---------------------C-SS
T ss_pred             -------eeeeecccCceEEEEECCC-CCEEEEEecCCcEEEEECCCCceEeeec---------------------C-CC
Confidence                   1222346778999999997 5899999999999999999876443321                     1 12


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .+.+++|+|++++|++++.++.|++||+.++
T Consensus       226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~  256 (337)
T 1gxr_A          226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            5999999999999999999999999998763

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3e-34  Score=309.81  Aligned_cols=242  Identities=12%  Similarity=0.181  Sum_probs=185.4

Q ss_pred             cccccccccccccccccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEc------------ccC
Q 004685           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE------------TGH   92 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~------------~~h   92 (737)
                      .+..+++|+  ....+....+++|.++|++++|+| ++++||+|+.||.|++||+.+++....+.            .+|
T Consensus        21 ~~~~~~v~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (408)
T 4a11_B           21 AESTRRVLG--LELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH   98 (408)
T ss_dssp             HHHHHHHHT--EEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred             ccCcceeec--cccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence            456788888  455567788889999999999999 99999999999999999999876554441            259


Q ss_pred             ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC--cEEEEEeCCC
Q 004685           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDG  170 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~Dg  170 (737)
                      ...|.+++|+|+. +.+|++++.||.|++||+....          ....+ .+...+.++.|+|.+.  .++++++.|+
T Consensus        99 ~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (408)
T 4a11_B           99 RYSVETVQWYPHD-TGMFTSSSFDKTLKVWDTNTLQ----------TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGP  166 (408)
T ss_dssp             SSCEEEEEECTTC-TTCEEEEETTSEEEEEETTTTE----------EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred             CCcEEEEEEccCC-CcEEEEEeCCCeEEEeeCCCCc----------cceec-cCCCceeeeEeecCCCCCcEEEEEcCCC
Confidence            9999999999953 7899999999999999998632          13333 3788899999998533  4899999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-
Q 004685          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-  249 (737)
Q Consensus       171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-  249 (737)
                      .|++||++++...                         .....|...|.+++|+|++..+|++++.||.|++||++... 
T Consensus       167 ~v~~~d~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~  221 (408)
T 4a11_B          167 KVQLCDLKSGSCS-------------------------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG  221 (408)
T ss_dssp             SEEEEESSSSCCC-------------------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC
T ss_pred             eEEEEeCCCccee-------------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc
Confidence            9999999877532                         12235678899999999865579999999999999998765 


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      .+..+........     ........+|. ..|.+++|+|++++|++++.||.|++||+.+++
T Consensus       222 ~~~~~~~~~~~~~-----~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          222 CLITLDQHNGKKS-----QAVESANTAHN-GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             CSEECCTTTTCSC-----CCTTTSSCSCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             ccccccccccccc-----eeecccccccc-CceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence            2222211100000     00000012233 369999999999999999999999999999854

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.8e-35  Score=336.21  Aligned_cols=249  Identities=13%  Similarity=0.126  Sum_probs=203.9

Q ss_pred             CCCccccccccccccc------ccccceeecccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEEcccC
Q 004685           23 RPDVNHSLQMHSSLVR------RLSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIETGH   92 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~------~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d----g~V~vwd~~~~~~~~~~~~~h   92 (737)
                      ..+.++.|++|+....      ..+....+.+|..+|.+++|+|++++|++++.+    +.|++||  .++.+..+ .+|
T Consensus        83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~  159 (615)
T 1pgu_A           83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGH  159 (615)
T ss_dssp             EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSC
T ss_pred             EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceee-ecC
Confidence            3456889999996444      557788899999999999999999999999987    6888888  56677777 789


Q ss_pred             ccceEEEEEeeCCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC---ceeEEEEecCCCcEEEEEeC
Q 004685           93 SANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASE  168 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~  168 (737)
                      ...|.+++|+|+  +. +|++++.|+.|++||+...          +.+..+..|..   .|.+++|+|+++.+|++++.
T Consensus       160 ~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (615)
T 1pgu_A          160 SQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPF----------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS  227 (615)
T ss_dssp             SSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTB----------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             CccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCc----------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence            999999999999  45 8999999999999998752          23667788998   99999999953789999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC-C---CCccceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP-P---KQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (737)
Q Consensus       169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd  244 (737)
                      |+.|++||+++++..                         ... .   .|...|.+++|+ + +.+|++++.|+.|++||
T Consensus       228 dg~i~vwd~~~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~~wd  280 (615)
T 1pgu_A          228 DRKISCFDGKSGEFL-------------------------KYIEDDQEPVQGGIFALSWL-D-SQKFATVGADATIRVWD  280 (615)
T ss_dssp             TCCEEEEETTTCCEE-------------------------EECCBTTBCCCSCEEEEEES-S-SSEEEEEETTSEEEEEE
T ss_pred             CCeEEEEECCCCCEe-------------------------EEecccccccCCceEEEEEc-C-CCEEEEEcCCCcEEEEE
Confidence            999999999887632                         111 2   567889999999 5 68999999999999999


Q ss_pred             CCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCC
Q 004685          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS  324 (737)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~  324 (737)
                      +++++.+..+....                 ......+.++.|. ++.++++++.||.|++||+.+++....+..+...+
T Consensus       281 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v  342 (615)
T 1pgu_A          281 VTTSKCVQKWTLDK-----------------QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGI  342 (615)
T ss_dssp             TTTTEEEEEEECCT-----------------TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCE
T ss_pred             CCCCcEEEEEcCCC-----------------CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCE
Confidence            99876554442210                 0112247888885 99999999999999999999877667777788889


Q ss_pred             eeeeeccC
Q 004685          325 KIMSFTPT  332 (737)
Q Consensus       325 ~~~~~~p~  332 (737)
                      ..++| |+
T Consensus       343 ~~~~~-~~  349 (615)
T 1pgu_A          343 TALTV-NP  349 (615)
T ss_dssp             EEEET-TT
T ss_pred             EEEEe-cC
Confidence            99999 76

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.3e-33  Score=306.95  Aligned_cols=201  Identities=18%  Similarity=0.270  Sum_probs=157.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      .++.|+||++ ++||+|. |++|+|||..+++.+..+. .+|...|++|+|+|+  +.+|++|+.||.|+|||+...   
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd--g~~lasgs~Dg~v~iWd~~~~---  179 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ---  179 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSCEEEEETTTT---
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC--CCEEEEEECCCeEEEEEcCCC---
Confidence            4678999975 5777775 8999999999998877652 367788999999999  799999999999999999863   


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (737)
                             +.+..+.+|...+.++.+++   .+|++|+.|+.+++||.......                        +..
T Consensus       180 -------~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~------------------------~~~  225 (420)
T 4gga_A          180 -------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHH------------------------VAT  225 (420)
T ss_dssp             -------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE------------------------EEE
T ss_pred             -------cEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeeccccee------------------------eEE
Confidence                   23678889999999998854   78999999999999998876421                        223


Q ss_pred             CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004685          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (737)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~  290 (737)
                      ...|...+..+.|+|+ +.++++++.|+.+++||...++......         ..     .  ..+. ..|.+++|+|+
T Consensus       226 ~~~h~~~~~~~~~~~~-g~~l~s~~~D~~v~i~~~~~~~~~~~~~---------~~-----~--~~~~-~~V~~~~~~p~  287 (420)
T 4gga_A          226 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPL---------QT-----F--TQHQ-GAVKAVAWCPW  287 (420)
T ss_dssp             EECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCCSSCSCCS---------EE-----E--CCCS-SCEEEEEECTT
T ss_pred             ecccccceeeeeecCC-CCeeeeeeccccceEEeeccccccceee---------ee-----e--cccC-CceeeeeeCCC
Confidence            3457788999999997 6899999999999999998765321110         00     0  1222 26999999996


Q ss_pred             CC-EEEEE--eCCCeEEEEEcCCC
Q 004685          291 GE-EVLLS--YSGEHVYLMDVNHA  311 (737)
Q Consensus       291 g~-~l~~g--~~dg~v~iwd~~~~  311 (737)
                      +. .++++  +.|++|++||+.++
T Consensus       288 ~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          288 QSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             CTTEEEEEECTTTCEEEEEETTTT
T ss_pred             cccEEEEEeecCCCEEEEEeCCcc
Confidence            65 44444  35999999998874

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-33  Score=297.95  Aligned_cols=171  Identities=13%  Similarity=0.202  Sum_probs=140.1

Q ss_pred             eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcE
Q 004685           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (737)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  162 (737)
                      +....+ .+|...|.+++|+|+  +.+|++|+.||+|++||+....          .+..+..|...|.+++|+| ++.+
T Consensus        46 ~~~~~l-~gH~~~v~~~~~s~d--~~~l~s~s~Dg~v~iWd~~~~~----------~~~~~~~~~~~v~~~~~s~-~~~~  111 (340)
T 1got_B           46 RTRRTL-RGHLAKIYAMHWGTD--SRLLLSASQDGKLIIWDSYTTN----------KVHAIPLRSSWVMTCAYAP-SGNY  111 (340)
T ss_dssp             CEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTCC----------EEEEEECSSSCEEEEEECT-TSSE
T ss_pred             hhheee-cCCCCceEEEEECCC--CCEEEEEeCCCcEEEEECCCCC----------cceEeecCCccEEEEEECC-CCCE
Confidence            345667 799999999999999  7999999999999999987632          3667788999999999999 6689


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (737)
Q Consensus       163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i  242 (737)
                      |++|+.|+.|++||+.+....                     .........|...+.++.|+++  ..+++++.|+.|++
T Consensus       112 l~s~~~d~~v~iw~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~~~--~~l~s~s~d~~i~~  168 (340)
T 1got_B          112 VACGGLDNICSIYNLKTREGN---------------------VRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCAL  168 (340)
T ss_dssp             EEEEETTCEEEEEETTTCSBS---------------------CEEEEEEECCSSCEEEEEEEET--TEEEEEETTSCEEE
T ss_pred             EEEEeCCCeEEEEECccCCCc---------------------ceeEEEecCCCccEEEEEECCC--CcEEEEECCCcEEE
Confidence            999999999999999875421                     0112223357788999999986  36999999999999


Q ss_pred             EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ||+++++.+..+                    .+|.. .|.+++|+|++++|++|+.|+.|++||+.++
T Consensus       169 wd~~~~~~~~~~--------------------~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~  216 (340)
T 1got_B          169 WDIETGQQTTTF--------------------TGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREG  216 (340)
T ss_dssp             EETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EECCCCcEEEEE--------------------cCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            999987654433                    22333 5999999999999999999999999998763

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9e-34  Score=298.63  Aligned_cols=206  Identities=17%  Similarity=0.224  Sum_probs=169.2

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE---cccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      .|...|++++|+|++ .|++|+.||+|+|||+.+++.+..+   ..+|...|++++|+|+  +.+|++|+.|++|++||+
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEET
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEEC
Confidence            467889999999985 6889999999999999988754332   2589999999999999  799999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (737)
                      .++          +++..+.+|...|++++|+|++..+|++++.|++|++||+++++...                    
T Consensus       157 ~~~----------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~--------------------  206 (344)
T 4gqb_B          157 AQQ----------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS--------------------  206 (344)
T ss_dssp             TTT----------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE--------------------
T ss_pred             CCC----------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee--------------------
Confidence            863          33778899999999999999777899999999999999999876431                    


Q ss_pred             eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (737)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (737)
                         ......+...+.+++|+|+++++|++|+.|+.|++||+++++.+..+                    .+|.. .|++
T Consensus       207 ---~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--------------------~~h~~-~v~~  262 (344)
T 4gqb_B          207 ---QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--------------------AVHSQ-CVTG  262 (344)
T ss_dssp             ---ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--------------------ECCSS-CEEE
T ss_pred             ---eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--------------------cCCCC-CEEE
Confidence               11112334568899999987889999999999999999988765544                    22433 5999


Q ss_pred             EEEcCCC-CEEEEEeCCCeEEEEEcCC
Q 004685          285 VTFSPNG-EEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       285 v~~sp~g-~~l~~g~~dg~v~iwd~~~  310 (737)
                      ++|+|++ ++|++|+.|++|++||+.+
T Consensus       263 v~fsp~g~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          263 LVFSPHSVPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             EEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCC
Confidence            9999998 5789999999999999776

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.4e-33  Score=290.86  Aligned_cols=201  Identities=19%  Similarity=0.282  Sum_probs=156.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      .+++|+||+++ +||+|. |++|+|||+.+++++..+. .+|...|++++|+|+  +++|++|+.||+|++||+..+   
T Consensus        27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~--~~~l~sgs~Dg~v~iw~~~~~---   99 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ---   99 (318)
T ss_dssp             TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSEEEEEETTTT---
T ss_pred             cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC--CCEEEEEECCCcEEEeecCCc---
Confidence            35789999876 777764 8999999999999887762 367788999999999  799999999999999999863   


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (737)
                             +.+..+.+|...+.++.+.+   .++++++.++.+++|+.......                        +..
T Consensus       100 -------~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~------------------------~~~  145 (318)
T 4ggc_A          100 -------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHH------------------------VAT  145 (318)
T ss_dssp             -------EEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE------------------------EEE
T ss_pred             -------eeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCcee------------------------EEE
Confidence                   23677889999988877653   78999999999999998876421                        222


Q ss_pred             CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004685          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (737)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~  290 (737)
                      ...|...+..+.+++. +.++++++.|+.|++||+++++........                 .......|..++++|+
T Consensus       146 ~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~  207 (318)
T 4ggc_A          146 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPLQT-----------------FTQHQGAVKAVAWCPW  207 (318)
T ss_dssp             EECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCBTTBSCCSEE-----------------ECCCCSCEEEEEECTT
T ss_pred             EcCccCceEEEEEcCC-CCEEEEEecCcceeEEECCCCcccccceee-----------------ecccCCceEEEEecCC
Confidence            3356778999999997 589999999999999999876533221100                 0111225999999997


Q ss_pred             CCEEE---EEeCCCeEEEEEcCCC
Q 004685          291 GEEVL---LSYSGEHVYLMDVNHA  311 (737)
Q Consensus       291 g~~l~---~g~~dg~v~iwd~~~~  311 (737)
                      +..++   +++.++.|++||....
T Consensus       208 ~~~~~~~~~~~~~~~i~lwd~~~~  231 (318)
T 4ggc_A          208 QSNVLATGGGTSDRHIRIWNVCSG  231 (318)
T ss_dssp             STTEEEEEECTTTCEEEEEETTTC
T ss_pred             CCcEEEEEecCCCCEEEEEecccc
Confidence            66443   4556899999998763

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.1e-33  Score=290.03  Aligned_cols=186  Identities=14%  Similarity=0.181  Sum_probs=141.6

Q ss_pred             ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~--~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      +..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+  .+.+..+ .+|..+|.+++|+|...+.+|++|+.|++|+
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            356789999999999999999999999999999999974  3567777 7999999999998642268999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      +||+.....        ..+..+..|...|.+++|+|+. +.+|++++.|+.|++||++......               
T Consensus        81 iWd~~~~~~--------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---------------  137 (297)
T 2pm7_B           81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---------------  137 (297)
T ss_dssp             EEEBSSSCB--------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---------------
T ss_pred             EEEcCCCce--------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---------------
Confidence            999985321        2356677899999999999952 6799999999999999998753110               


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                              ......|...|.+++|+|+....      ++        .                                
T Consensus       138 --------~~~~~~h~~~v~~~~~~p~~~~~------~~--------~--------------------------------  163 (297)
T 2pm7_B          138 --------PIIIDAHAIGVNSASWAPATIEE------DG--------E--------------------------------  163 (297)
T ss_dssp             --------CEEEECCSSCEEEEEECCCC----------------------------------------------------
T ss_pred             --------eeeeecccCccceEeecCCcccc------cc--------c--------------------------------
Confidence                    01112456678888888852100      00        0                                


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                           ....+++++|++|+.|+.|++||+.++
T Consensus       164 -----~~~~~~~~~l~sgs~D~~v~lwd~~~~  190 (297)
T 2pm7_B          164 -----HNGTKESRKFVTGGADNLVKIWKYNSD  190 (297)
T ss_dssp             -----------CCEEEEEETTSCEEEEEEETT
T ss_pred             -----CCCCCCcceEEEEcCCCcEEEEEEcCC
Confidence                 001235789999999999999998763

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.2e-34  Score=308.57  Aligned_cols=190  Identities=15%  Similarity=0.196  Sum_probs=150.7

Q ss_pred             cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeE
Q 004685           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK  152 (737)
Q Consensus        73 ~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  152 (737)
                      .+..|+.....+...+ .+|...|++++|+|+  +.+|++|+.|++|+|||+....          ....+..|...|.+
T Consensus        47 ~~~~~~~~~~~~~~~l-~gH~~~V~~~~~sp~--~~~l~s~s~D~~v~iWd~~~~~----------~~~~~~~h~~~v~~  113 (380)
T 3iz6_a           47 TAVSFNPTDLVCCRTL-QGHSGKVYSLDWTPE--KNWIVSASQDGRLIVWNALTSQ----------KTHAIKLHCPWVME  113 (380)
T ss_dssp             GCCCCCCCCCEEEEEE-CCCSSCEEEEEECTT--SSCEEEEETTSEEEEEETTTTE----------EEEEEECCCTTCCC
T ss_pred             cccccccceeEEeecc-cccccEEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCc----------cceEEecCCCCEEE
Confidence            3445666677777888 899999999999999  7999999999999999997632          26778889999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEE
Q 004685          153 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL  232 (737)
Q Consensus       153 l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~  232 (737)
                      ++|+| ++.+|++|+.|+.|++||+.......                  +.........+|...+.++.|+|+++..|+
T Consensus       114 ~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~  174 (380)
T 3iz6_a          114 CAFAP-NGQSVACGGLDSACSIFNLSSQADRD------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLI  174 (380)
T ss_dssp             CEECT-TSSEEEECCSSSCCEEEECCCCSSCC------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred             EEECC-CCCEEEEeeCCCcEEEEECCCCcccc------------------CCccceeeccCCCcceEEEEEecCCCCEEE
Confidence            99999 66899999999999999997653210                  011112334578888999999998777899


Q ss_pred             EEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCC
Q 004685          233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       233 t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +|+.|+.|++||+++++.+..+....               ..+|.. .|.+++|+| ++.+|++|+.|+.|++||++.
T Consensus       175 s~s~D~~i~~wd~~~~~~~~~~~~~~---------------~~~h~~-~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~  237 (380)
T 3iz6_a          175 TGSGDQTCVLWDVTTGQRISIFGSEF---------------PSGHTA-DVLSLSINSLNANMFISGSCDTTVRLWDLRI  237 (380)
T ss_dssp             EECTTSCEEEECTTTCCEEEEECCCS---------------SSSCCS-CEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred             EECCCCcEEEEEcCCCcEEEEeeccc---------------CCCCcc-CeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence            99999999999999887554432110               022333 599999987 889999999999999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.7e-33  Score=303.11  Aligned_cols=247  Identities=13%  Similarity=0.107  Sum_probs=185.8

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      ...++.+++|+  ..+.+....+.+| ..+....|+|++++|++|+.||.|++||+.+++....+ .+|...|.+++|+|
T Consensus        74 ~~~d~~v~i~d--~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~  149 (420)
T 3vl1_A           74 ARLDGHDFLFN--TIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFP  149 (420)
T ss_dssp             EEETTEEEEEE--CCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECT
T ss_pred             EEcCCcEEEEE--ecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec-ccccCccEEEEECC
Confidence            45578899999  4444555666666 45555678999999999999999999999999888777 78999999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      +  +.+|++|+.|+.|++||+....          .+..+.+|...|.+++|+| ++.+|++++.|+.|++||+++++..
T Consensus       150 ~--~~~l~s~s~d~~i~iwd~~~~~----------~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~  216 (420)
T 3vl1_A          150 S--GEALISSSQDMQLKIWSVKDGS----------NPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTI  216 (420)
T ss_dssp             T--SSEEEEEETTSEEEEEETTTCC----------CCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             C--CCEEEEEeCCCeEEEEeCCCCc----------CceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCcee
Confidence            9  7999999999999999998632          3677889999999999999 5689999999999999999987643


Q ss_pred             CCCCC--CCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCC
Q 004685          184 PPAGS--SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (737)
Q Consensus       184 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (737)
                      .....  .+......+.-..... .  .....+...+.+++|+|+ +++|++++.||.|++||+++++.+..+.      
T Consensus       217 ~~~~~~~~~~~~v~~~~~~~~~~-~--~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~------  286 (420)
T 3vl1_A          217 HTFNRKENPHDGVNSIALFVGTD-R--QLHEISTSKKNNLEFGTY-GKYVIAGHVSGVITVHNVFSKEQTIQLP------  286 (420)
T ss_dssp             EEECBTTBTTCCEEEEEEEECCC-S--SCGGGCCCCCCTTCSSCT-TEEEEEEETTSCEEEEETTTCCEEEEEC------
T ss_pred             EEeecCCCCCCCccEEEEecCCc-c--eeeecccCcccceEEcCC-CCEEEEEcCCCeEEEEECCCCceeEEcc------
Confidence            11110  0000000000000000 0  000112356677788886 6899999999999999999876543331      


Q ss_pred             CCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 004685          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~  311 (737)
                                   .+|. ..|.+++|+|++. +|++|+.||.|++||+.++
T Consensus       287 -------------~~~~-~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  323 (420)
T 3vl1_A          287 -------------SKFT-CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP  323 (420)
T ss_dssp             -------------CTTS-SCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             -------------cccC-CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence                         1122 2699999999999 9999999999999999874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.9e-34  Score=302.63  Aligned_cols=207  Identities=9%  Similarity=0.076  Sum_probs=139.2

Q ss_pred             CCceEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCeE----------EEEEcccCccceEEEEEeeCCCCCEEEE
Q 004685           50 QGCVNAISWNSKGSLLISGSDD-------THINVWSYSSRKL----------LHSIETGHSANVFCTKFVPETSDELVVS  112 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~d-------g~V~vwd~~~~~~----------~~~~~~~h~~~V~~v~~sp~~~~~~l~s  112 (737)
                      ..||+|++|+||+++|++|+.+       +.|++|++.....          ...+ ..|...|.++++++    +.+++
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~~v~s~~~~~----~~~~~   88 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL-EDNDDSPTAIDASK----GIILV   88 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC-CTTSCCCCEEEEET----TEEEE
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc-cCCCCceEEEEeCC----CEEEE
Confidence            4689999999999999999754       3599999875431          1123 57888898887754    45665


Q ss_pred             E-----------ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEE--EEeCCCcEEEEEcCC
Q 004685          113 G-----------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW--SASEDGTLRQHDFRQ  179 (737)
Q Consensus       113 g-----------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~--s~s~Dg~I~vwdl~~  179 (737)
                      |           +.|+.+++|++........... .........+...+.+++|+| ++++++  +++.|++|++||+.+
T Consensus        89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~  166 (365)
T 4h5i_A           89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-SVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSD  166 (365)
T ss_dssp             ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE-EECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTT
T ss_pred             EECCCccEEEEecCCCcEEEEEecCCCceEEEee-eeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCC
Confidence            5           3578899999875432110000 000111233456789999999 456654  445789999999988


Q ss_pred             CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC
Q 004685          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (737)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~  259 (737)
                      ++..              .        .+    .|...|.+++|+|+ ++++++++.+ .+++|+..++..+....    
T Consensus       167 ~~~~--------------~--------~~----~~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~~~~~~~~~~~----  214 (365)
T 4h5i_A          167 LTEK--------------F--------EI----ETRGEVKDLHFSTD-GKVVAYITGS-SLEVISTVTGSCIARKT----  214 (365)
T ss_dssp             TEEE--------------E--------EE----ECSSCCCEEEECTT-SSEEEEECSS-CEEEEETTTCCEEEEEC----
T ss_pred             CcEE--------------E--------Ee----CCCCceEEEEEccC-CceEEeccce-eEEEEEeccCcceeeee----
Confidence            7522              0        01    24567999999997 5899888854 56677766654322110    


Q ss_pred             CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC----eEEEEEcCC
Q 004685          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE----HVYLMDVNH  310 (737)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg----~v~iwd~~~  310 (737)
                                    ..+|. ..|.+++|+|++.++++++.|+    .+++|++..
T Consensus       215 --------------~~~~~-~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~  254 (365)
T 4h5i_A          215 --------------DFDKN-WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS  254 (365)
T ss_dssp             --------------CCCTT-EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred             --------------cCCCC-CCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence                          01222 2599999999999999999876    577777665

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.4e-33  Score=307.39  Aligned_cols=209  Identities=22%  Similarity=0.350  Sum_probs=170.9

Q ss_pred             cccceeecccCCce-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc
Q 004685           40 LSQERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (737)
Q Consensus        40 ~~~~~~l~~H~~~V-~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~  118 (737)
                      .+....+.+|.+.| .|+  ++++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|++    ++|++|+.||.
T Consensus       108 ~~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~----~~l~s~~~dg~  180 (445)
T 2ovr_B          108 LKSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRD----NIIISGSTDRT  180 (445)
T ss_dssp             CCCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEET----TEEEEEETTSC
T ss_pred             cceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEecC----CEEEEEeCCCe
Confidence            45667899999875 554  456899999999999999999999999988 79999999999973    59999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (737)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~  198 (737)
                      |++||+..+          +.+..+.+|...|.++.|++   ..+++|+.||.|++||+.+++..               
T Consensus       181 i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~---------------  232 (445)
T 2ovr_B          181 LKVWNAETG----------ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL---------------  232 (445)
T ss_dssp             EEEEETTTT----------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE---------------
T ss_pred             EEEEECCcC----------cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEE---------------
Confidence            999999863          23677889999999999964   67999999999999999876521               


Q ss_pred             eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                                .....|...+.+++|+   +..+++++.|+.|++||+++++.+..+.                    +|.
T Consensus       233 ----------~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------~~~  279 (445)
T 2ovr_B          233 ----------HVLMGHVAAVRCVQYD---GRRVVSGAYDFMVKVWDPETETCLHTLQ--------------------GHT  279 (445)
T ss_dssp             ----------EEEECCSSCEEEEEEC---SSCEEEEETTSCEEEEEGGGTEEEEEEC--------------------CCS
T ss_pred             ----------EEEcCCcccEEEEEEC---CCEEEEEcCCCEEEEEECCCCcEeEEec--------------------CCC
Confidence                      1223467789999983   4789999999999999998876544431                    233


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeee
Q 004685          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT  319 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~  319 (737)
                      . .|.+++|  ++.++++++.|+.|++||+.+++.......
T Consensus       280 ~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  317 (445)
T 2ovr_B          280 N-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG  317 (445)
T ss_dssp             S-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             C-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC
Confidence            3 5999999  889999999999999999998765444433

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5e-33  Score=306.51  Aligned_cols=229  Identities=19%  Similarity=0.345  Sum_probs=174.9

Q ss_pred             ccceeecccCCce-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           41 SQERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        41 ~~~~~l~~H~~~V-~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      ....++++|...| .++.+  ++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|+|+  + +|++|+.||+|
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~--~-~l~s~s~dg~i  185 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG--G-ILVSGSTDRTV  185 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECST--T-EEEEEETTSCE
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcCC--C-EEEEEeCCCCE
Confidence            3456889999885 66666  5689999999999999999999999999 799999999999997  4 99999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~  198 (737)
                      ++||+....          .+..+.+|...|.+++|++ .++.++++++.|+.|++||++.............  .....
T Consensus       186 ~vwd~~~~~----------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~  253 (464)
T 3v7d_B          186 RVWDIKKGC----------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD--YPLVF  253 (464)
T ss_dssp             EEEETTTTE----------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC--SSEEE
T ss_pred             EEEECCCCc----------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC--cceEe
Confidence            999998632          3677888999999999995 2558999999999999999998764422211111  01111


Q ss_pred             eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                      .........+.....|...+.++.  ++ ++++++++.|+.|++||+++++.+..+                    .+|.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~v~~~~--~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~--------------------~~~~  310 (464)
T 3v7d_B          254 HTPEENPYFVGVLRGHMASVRTVS--GH-GNIVVSGSYDNTLIVWDVAQMKCLYIL--------------------SGHT  310 (464)
T ss_dssp             SCGGGCTTEEEEECCCSSCEEEEE--EE-TTEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCS
T ss_pred             eccCCCeEEEEEccCccceEEEEc--CC-CCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCC
Confidence            111111112233445667777764  43 579999999999999999987655443                    2233


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      . .|.+++|+|++++|++|+.||.|++||+.++
T Consensus       311 ~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          311 D-RIYSTIYDHERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             S-CEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             C-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            3 5999999999999999999999999998873

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=321.21  Aligned_cols=231  Identities=14%  Similarity=0.095  Sum_probs=175.8

Q ss_pred             CCCCCccccccccccccccccc--ceeecccCCceEEEEEcCC------CCEEEEEeCCCcEEEEECCCCeE--------
Q 004685           21 DTRPDVNHSLQMHSSLVRRLSQ--ERELEGHQGCVNAISWNSK------GSLLISGSDDTHINVWSYSSRKL--------   84 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~H~~~V~~l~~s~~------g~~lasgs~dg~V~vwd~~~~~~--------   84 (737)
                      ..+.+.+++|++|+........  ..++.+|.+.|++++|+|+      +.+||+|+.||+|+|||+.++..        
T Consensus       176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~  255 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC  255 (524)
T ss_dssp             ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred             hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence            3567889999999954433221  2457788899999999996      57999999999999999987642        


Q ss_pred             ---EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEE--EEecCC
Q 004685           85 ---LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL--AVEVGN  159 (737)
Q Consensus        85 ---~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~~p~~  159 (737)
                         ...+ .+|...|++++|+|+   ..|++|+.||+|++||++...         .+...+.+|...|+++  .|+| +
T Consensus       256 ~~p~~~l-~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~---------~~~~~~~~H~~~V~sv~~~~s~-~  321 (524)
T 2j04_B          256 EKPSLTL-SLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPE---------VPSFYDQVHDSYILSVSTAYSD-F  321 (524)
T ss_dssp             CSCSEEE-CCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCS---------SCSEEEECSSSCEEEEEEECCT-T
T ss_pred             cCceEEE-EcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCC---------CceEEeecccccEEEEEEEcCC-C
Confidence               1245 689999999999986   589999999999999998532         2245678999999999  4566 5


Q ss_pred             C-cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC
Q 004685          160 P-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (737)
Q Consensus       160 ~-~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg  238 (737)
                      + ++|++|+.|++|++||+++++..           ..+...            .....+.+++|+|+ ++.+++++.|+
T Consensus       322 g~~~laS~S~D~tvklWD~~~~~~~-----------~~~~~~------------~~~~~v~~v~fsp~-~~~l~s~~~d~  377 (524)
T 2j04_B          322 EDTVVSTVAVDGYFYIFNPKDIATT-----------KTTVSR------------FRGSNLVPVVYCPQ-IYSYIYSDGAS  377 (524)
T ss_dssp             SCCEEEEEETTSEEEEECGGGHHHH-----------CEEEEE------------CSCCSCCCEEEETT-TTEEEEECSSS
T ss_pred             CCeEEEEeccCCeEEEEECCCCCcc-----------cccccc------------cccCcccceEeCCC-cCeEEEeCCCC
Confidence            4 89999999999999999876522           111000            00124688999997 57899999999


Q ss_pred             cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      .|++||++.+..+..+                    .+|.. .|++|+|+|+|++|++|+.|++|++||+..
T Consensus       378 tv~lwd~~~~~~~~~l--------------------~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          378 SLRAVPSRAAFAVHPL--------------------VSRET-TITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEEEEETTCTTCCEEE--------------------EECSS-CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             cEEEEECcccccceee--------------------ecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            9999999976543322                    22443 699999999999999999999999999754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.3e-33  Score=329.36  Aligned_cols=213  Identities=14%  Similarity=0.246  Sum_probs=182.3

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      ++..++|.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+ ..|..+|.+++|+|+  +.+|++|+.||.|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg~i   79 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFRI   79 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSEE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeCC--CCEEEEEeCCCeE
Confidence            5667889999999999999999999999999999999999999999998 789999999999999  7999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      ++||+..+.          .+..+.+|...|++++|+| ++.+|++++.||.|++||+.++...                
T Consensus        80 ~vw~~~~~~----------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~----------------  132 (814)
T 3mkq_A           80 RVFNYNTGE----------KVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWAL----------------  132 (814)
T ss_dssp             EEEETTTCC----------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEE----------------
T ss_pred             EEEECCCCc----------EEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceE----------------
Confidence            999998632          3677888999999999999 5678999999999999999876311                


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                              ......|...+.+++|+|.++..|++++.||.|++||++.......+.                    .+..
T Consensus       133 --------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--------------------~~~~  184 (814)
T 3mkq_A          133 --------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--------------------TGQE  184 (814)
T ss_dssp             --------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE--------------------CCCT
T ss_pred             --------EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe--------------------cCCC
Confidence                    112234667899999999546899999999999999998765443331                    1222


Q ss_pred             cceeEEEEcC--CCCEEEEEeCCCeEEEEEcCC
Q 004685          280 LHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       280 ~~i~~v~~sp--~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      ..+.+++|+|  ++.+|++++.||.|++||+.+
T Consensus       185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  217 (814)
T 3mkq_A          185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (814)
T ss_dssp             TCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            2599999999  999999999999999999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.3e-33  Score=300.89  Aligned_cols=204  Identities=19%  Similarity=0.285  Sum_probs=162.4

Q ss_pred             eecccCCc--eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685           45 ELEGHQGC--VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (737)
Q Consensus        45 ~l~~H~~~--V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw  122 (737)
                      ...+|...  +.+++|++  ..+++++.|+.|++||+.+++....+...|...|.+++|+|+  +.+|++|+.||.|++|
T Consensus        86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw  161 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD--GSFLSVGLGNGLVDIY  161 (401)
T ss_dssp             ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT--SSEEEEEETTSCEEEE
T ss_pred             eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC--CCEEEEECCCCeEEEE
Confidence            34467655  44566664  568888899999999999999888775558999999999998  7999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                      |+...          +.+..+.+|...|.+++|++   ++|++++.||.|++||++.....                   
T Consensus       162 d~~~~----------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~-------------------  209 (401)
T 4aez_A          162 DVESQ----------TKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQ-------------------  209 (401)
T ss_dssp             ETTTC----------CEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE-------------------
T ss_pred             ECcCC----------eEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcce-------------------
Confidence            99863          23677889999999999954   68999999999999999854321                   


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  282 (737)
                           +.....|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+.                    +|.. .|
T Consensus       210 -----~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~--------------------~~~~-~v  262 (401)
T 4aez_A          210 -----IGTLQGHSSEVCGLAWRSD-GLQLASGGNDNVVQIWDARSSIPKFTKT--------------------NHNA-AV  262 (401)
T ss_dssp             -----EEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTCSSEEEEEC--------------------CCSS-CC
T ss_pred             -----eeEEcCCCCCeeEEEEcCC-CCEEEEEeCCCeEEEccCCCCCccEEec--------------------CCcc-eE
Confidence                 2223356789999999996 6899999999999999999866543331                    1222 59


Q ss_pred             eEEEEcCCCCEEE-EEe--CCCeEEEEEcCCC
Q 004685          283 THVTFSPNGEEVL-LSY--SGEHVYLMDVNHA  311 (737)
Q Consensus       283 ~~v~~sp~g~~l~-~g~--~dg~v~iwd~~~~  311 (737)
                      .+++|+|++..++ +++  .|+.|++||+.++
T Consensus       263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             CEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             EEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence            9999999775554 443  5999999998874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-34  Score=307.98  Aligned_cols=228  Identities=12%  Similarity=0.098  Sum_probs=167.2

Q ss_pred             ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004685           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (737)
Q Consensus        46 l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd  123 (737)
                      ++.|.++|++++|+|++++||+|+.|+.|+|||+.++  +.+..+ .+|...|.+++|+|+  +.+|++++.|+.|++||
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPK--SNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTT--TCCEEEEETTSSEEEC-
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCC--CCEEEEEeCCCeEEEEE
Confidence            4457789999999999999999999999999999988  667777 789999999999999  79999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (737)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (737)
                      +.....       ..+...+..|...|.+++|+| ++.+|++++.|+.|++||++......                   
T Consensus        84 ~~~~~~-------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~-------------------  136 (377)
T 3dwl_C           84 KRPDGT-------WKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWW-------------------  136 (377)
T ss_dssp             -----C-------CCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CC-------------------
T ss_pred             cCCCCc-------eeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccce-------------------
Confidence            986431       123566778999999999999 66889999999999999998875210                   


Q ss_pred             ceeeccCCCC-CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685          204 AKRSLADPPK-QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (737)
Q Consensus       204 ~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  282 (737)
                         ....... |...|.+++|+|+ +++|++++.|+.|++||++.............. ...........  .+|.. .|
T Consensus       137 ---~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~-~v  208 (377)
T 3dwl_C          137 ---VSKHLKRPLRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWG-SRLPFNTVCAE--YPSGG-WV  208 (377)
T ss_dssp             ---CCEEECSSCCSCEEEEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSC-SCCCEEEEEEC--CCCSS-SE
T ss_pred             ---eeeEeecccCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCccccccc-cccchhhhhhc--ccCCc-eE
Confidence               0111122 6789999999997 589999999999999999754422111000000 00000000000  13333 69


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          283 THVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       283 ~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .+++|+|++++|++++.||.|++||+.++
T Consensus       209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          209 HAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             EEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            99999999999999999999999999874

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.5e-33  Score=291.61  Aligned_cols=204  Identities=16%  Similarity=0.164  Sum_probs=166.4

Q ss_pred             eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEcccCccceEEEEEeeCCCCC-EEEEEECCCcE
Q 004685           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEV  119 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I  119 (737)
                      ....+|.+.|++++|+|++++|++|+.|+.|+|||+.+++   ....+ ..|...|.+++|+|+  +. +|++|+.||.|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i   81 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDN--TDLQIYVGTVQGEI   81 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEES--SSEEEEEEETTSCE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCC--CCcEEEEEcCCCeE
Confidence            3345899999999999999999999999999999998876   33444 579999999999999  79 99999999999


Q ss_pred             EEEec-CCCCCCCCCCCCCCCceeecc--CCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC---------CCCCCCCC
Q 004685          120 RLFNL-SRFSGRGLDDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ---------GSSCPPAG  187 (737)
Q Consensus       120 ~iwd~-~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~---------~~~~~~~~  187 (737)
                      ++||+ ....           ...+.+  |...|.+++|+|  +.+|++++.|+.|++||++.         .+..    
T Consensus        82 ~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----  144 (342)
T 1yfq_A           82 LKVDLIGSPS-----------FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS----  144 (342)
T ss_dssp             EEECSSSSSS-----------EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS----
T ss_pred             EEEEeccCCc-----------eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee----
Confidence            99999 7532           466777  999999999999  57899999999999999986         3321    


Q ss_pred             CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCccc
Q 004685          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNY  266 (737)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~  266 (737)
                                           .... +...+.+++|+|+   .+++++.|+.|++||++. ........           
T Consensus       145 ---------------------~~~~-~~~~v~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------  188 (342)
T 1yfq_A          145 ---------------------NNTK-VKNKIFTMDTNSS---RLIVGMNNSQVQWFRLPLCEDDNGTIE-----------  188 (342)
T ss_dssp             ---------------------SSSS-SCCCEEEEEECSS---EEEEEESTTEEEEEESSCCTTCCCEEE-----------
T ss_pred             ---------------------eEEe-eCCceEEEEecCC---cEEEEeCCCeEEEEECCccccccceee-----------
Confidence                                 1112 5678999999985   299999999999999987 43211100           


Q ss_pred             cccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 004685          267 FCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       267 ~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                             ...+ ...|.+++|+| ++++|++++.||.|++|++...
T Consensus       189 -------~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          189 -------ESGL-KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             -------ECSC-SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             -------ecCC-CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence                   0112 22599999999 9999999999999999998874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5e-34  Score=337.42  Aligned_cols=252  Identities=15%  Similarity=0.188  Sum_probs=213.4

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      ...++.|++|+  ..+.+...++.+|.++|++++|+|++++|++|+.||.|+|||+.+++.+..+ .+|...|.+++|+|
T Consensus        31 ~~~~g~v~iwd--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~  107 (814)
T 3mkq_A           31 TLYSGRVEIWN--YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHP  107 (814)
T ss_dssp             EETTSEEEEEE--TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECS
T ss_pred             EeCCCEEEEEE--CCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeC
Confidence            34578999999  5567788899999999999999999999999999999999999999999988 78999999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                      +  +.+|++++.||.|++||+....         .....+.+|...|.+++|+|.++.+|++++.||.|++||+..+...
T Consensus       108 ~--~~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~  176 (814)
T 3mkq_A          108 T--KPYVLSGSDDLTVKLWNWENNW---------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (814)
T ss_dssp             S--SSEEEEEETTSEEEEEEGGGTS---------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred             C--CCEEEEEcCCCEEEEEECCCCc---------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence            9  7999999999999999998532         2256778899999999999966689999999999999999876532


Q ss_pred             CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec--CCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCC
Q 004685          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (737)
                                 ..             ....+...+.+++|+|  + +.++++++.||.|++||+++++.+..+.      
T Consensus       177 -----------~~-------------~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~------  225 (814)
T 3mkq_A          177 -----------FT-------------LTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLE------  225 (814)
T ss_dssp             -----------EE-------------EECCCTTCCCEEEECCSTT-CCEEEEECTTSEEEEEETTTTEEEEEEE------
T ss_pred             -----------eE-------------EecCCCCCEEEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcEEEEEc------
Confidence                       00             0112346788999998  6 5799999999999999998776443331      


Q ss_pred             CCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCC
Q 004685          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG  335 (737)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~  335 (737)
                                    +|.. .|.+++|+|++.+|++++.||.|++||+.++........+...+..++|+|+...
T Consensus       226 --------------~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  284 (814)
T 3mkq_A          226 --------------GHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK  284 (814)
T ss_dssp             --------------CCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGG
T ss_pred             --------------CCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCc
Confidence                          2222 5999999999999999999999999999998877777777888999999998764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-33  Score=307.41  Aligned_cols=219  Identities=14%  Similarity=0.139  Sum_probs=166.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~  131 (737)
                      .+++++|+|++++|++|+.|+.|++||+.+++....+ ..| ..+....|+|+  +.+|++|+.||.|++||+....   
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~---  130 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKLQ--MRRFILGTTEGDIKVLDSNFNL---  130 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECSS--SCEEEEEETTSCEEEECTTSCE---
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEecC--CCEEEEEECCCCEEEEeCCCcc---
Confidence            4558999999999999999999999999988766555 344 44455567888  7999999999999999988532   


Q ss_pred             CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004685          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (737)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (737)
                             ....+.+|...|++++|+| ++.+|++++.|+.|++||+++++.+                         ...
T Consensus       131 -------~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~-------------------------~~~  177 (420)
T 3vl1_A          131 -------QREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNP-------------------------RTL  177 (420)
T ss_dssp             -------EEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCC-------------------------EEE
T ss_pred             -------eeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCc-------------------------eEE
Confidence                   2556678999999999999 5689999999999999999887632                         112


Q ss_pred             CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccc---cccCCCCcccceeEEEEc
Q 004685          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM---HLSEHGRSSLHLTHVTFS  288 (737)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~v~~s  288 (737)
                      ..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.........+......   ...........+.+++|+
T Consensus       178 ~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s  256 (420)
T 3vl1_A          178 IGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG  256 (420)
T ss_dssp             ECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred             cCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence            357789999999997 6899999999999999999887766654322111111100000   000000011247778889


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCC
Q 004685          289 PNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       289 p~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      |++++|++|+.||.|++||+.++
T Consensus       257 ~~~~~l~~~~~dg~i~i~d~~~~  279 (420)
T 3vl1_A          257 TYGKYVIAGHVSGVITVHNVFSK  279 (420)
T ss_dssp             CTTEEEEEEETTSCEEEEETTTC
T ss_pred             CCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999999999999999874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.8e-33  Score=293.28  Aligned_cols=152  Identities=13%  Similarity=0.162  Sum_probs=117.9

Q ss_pred             eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEE
Q 004685           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~i  121 (737)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++  .+..+ .+|..+|.+++|+|..++.+|++|+.|++|++
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            3467899999999999999999999999999999998775  45667 79999999999986311689999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      ||++....        .....+.+|...|.+++|+|+. +.+|++|+.|+.|++||++.....                 
T Consensus        86 Wd~~~~~~--------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~-----------------  140 (316)
T 3bg1_A           86 WREENGTW--------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW-----------------  140 (316)
T ss_dssp             ECCSSSCC--------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-----------------
T ss_pred             EECCCCcc--------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-----------------
Confidence            99985321        2356677899999999999953 679999999999999999865310                 


Q ss_pred             cCCceeeccCCCCCccceEEEEEecC
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISST  226 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (737)
                           ........|...+.+++|+|+
T Consensus       141 -----~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A          141 -----EVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             -----EECCBTTSSSSCBCCCEECCC
T ss_pred             -----ceeeeeccccCCcceEEEccc
Confidence                 012233456778888999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.9e-33  Score=292.30  Aligned_cols=175  Identities=20%  Similarity=0.209  Sum_probs=137.5

Q ss_pred             eEEEEEcccCcc-ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCc
Q 004685           83 KLLHSIETGHSA-NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH  161 (737)
Q Consensus        83 ~~~~~~~~~h~~-~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  161 (737)
                      +++..+ .+|.. .|.+++|+|+  +.+|++|+.|++|+|||+.......       ......+|...|.+++|+| ++.
T Consensus         6 ~~~~~~-~~h~~~~v~~l~~sp~--g~~las~~~D~~i~iw~~~~~~~~~-------~~~~~~~h~~~v~~~~~sp-~g~   74 (345)
T 3fm0_A            6 VLLGRV-PAHPDSRCWFLAWNPA--GTLLASCGGDRRIRIWGTEGDSWIC-------KSVLSEGHQRTVRKVAWSP-CGN   74 (345)
T ss_dssp             EEEEEE-CCSTTSCEEEEEECTT--SSCEEEEETTSCEEEEEEETTEEEE-------EEEECSSCSSCEEEEEECT-TSS
T ss_pred             EEeeee-cCCCCCcEEEEEECCC--CCEEEEEcCCCeEEEEEcCCCccee-------eeeeccccCCcEEEEEECC-CCC
Confidence            456677 68887 9999999999  7999999999999999987532110       0123368999999999999 668


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEE
Q 004685          162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  241 (737)
Q Consensus       162 ~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~  241 (737)
                      +|++|+.|+.|++||+.....                       ..+....+|...|.+++|+|+ +++|++|+.|+.|+
T Consensus        75 ~l~s~s~D~~v~iw~~~~~~~-----------------------~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~  130 (345)
T 3fm0_A           75 YLASASFDATTCIWKKNQDDF-----------------------ECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVW  130 (345)
T ss_dssp             EEEEEETTSCEEEEEECCC-E-----------------------EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEE
T ss_pred             EEEEEECCCcEEEEEccCCCe-----------------------EEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEE
Confidence            999999999999999876531                       112334568889999999997 68999999999999


Q ss_pred             EEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +||++.......+          ..     +  .+|.. .|.+++|+|++.+|++|+.|+.|++||+.+
T Consensus       131 iwd~~~~~~~~~~----------~~-----~--~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~  181 (345)
T 3fm0_A          131 VWEVDEEDEYECV----------SV-----L--NSHTQ-DVKHVVWHPSQELLASASYDDTVKLYREEE  181 (345)
T ss_dssp             EEEECTTSCEEEE----------EE-----E--CCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEEET
T ss_pred             EEECCCCCCeEEE----------EE-----e--cCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEecC
Confidence            9999865422111          00     1  22333 599999999999999999999999999765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.9e-32  Score=298.58  Aligned_cols=233  Identities=15%  Similarity=0.266  Sum_probs=166.9

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEEcccCc------------cceEEEEEeeC
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHS------------ANVFCTKFVPE  104 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-----------~~~~~~~~h~------------~~V~~v~~sp~  104 (737)
                      .|.+.|++++|+|+|++||+|+.||.|+|||+.+++           ....+ .+|.            ..|.+++|+|+
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcCC
Confidence            467899999999999999999999999999999876           46677 6898            88999999999


Q ss_pred             CCCCEEEEEECCCcEEEEecCCCCCCCC---------------CCCCCC--------------Ccee-eccCCCceeEEE
Q 004685          105 TSDELVVSGAGDAEVRLFNLSRFSGRGL---------------DDNAIT--------------PSAL-YQCHTRRVKKLA  154 (737)
Q Consensus       105 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~---------------~~~~~~--------------~~~~-~~~h~~~v~~l~  154 (737)
                      .+..+|++++.|+.|++||+........               ......              +... ..+|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            3227999999999999999875221000               000000              0011 367999999999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEE
Q 004685          155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG  234 (737)
Q Consensus       155 ~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~  234 (737)
                      |+| ++.+|++| .|+.|++||++.....           ..+....      ......|...|.+++|+|+++++|++|
T Consensus       185 ~~~-~~~~l~s~-~d~~i~iwd~~~~~~~-----------~~~~~~~------~~~~~~~~~~v~~~~~~p~~~~~l~s~  245 (447)
T 3dw8_B          185 INS-DYETYLSA-DDLRINLWHLEITDRS-----------FNIVDIK------PANMEELTEVITAAEFHPNSCNTFVYS  245 (447)
T ss_dssp             ECT-TSSEEEEE-CSSEEEEEETTEEEEE-----------EEEEECC------CSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred             EcC-CCCEEEEe-CCCeEEEEECCCCCce-----------eeeeecc------cccccccCcceEEEEECCCCCcEEEEE
Confidence            999 66888888 7999999999843211           0111110      012345778899999999854899999


Q ss_pred             eCCCcEEEEECCCCCC----cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          235 GSDAFARLYDRRMLPP----LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       235 s~Dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +.|+.|++||+++++.    +..+.....+. ....+       .+|. ..|.+++|+|+|++|++++. +.|++||+.+
T Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~-~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPS-NRSFF-------SEII-SSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             ETTSCEEEEETTTCSSSCTTCEEECCC------CCHH-------HHHT-TCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             eCCCeEEEEECcCCccccceeeEeccCCCcc-ccccc-------cccC-ceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence            9999999999998764    22222111000 00000       0011 25999999999999999999 9999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.9e-32  Score=290.36  Aligned_cols=174  Identities=15%  Similarity=0.211  Sum_probs=138.8

Q ss_pred             eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcE
Q 004685           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (737)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  162 (737)
                      +....+ .+|...|++++|+|+  +.+|++|+.||+|++||.....          ....+..|...|.+++|+| ++.+
T Consensus        55 ~~~~~l-~gH~~~V~~~~~s~d--~~~l~s~s~Dg~v~vWd~~~~~----------~~~~~~~~~~~v~~~~~sp-~g~~  120 (354)
T 2pbi_B           55 KTRRTL-KGHGNKVLCMDWCKD--KRRIVSSSQDGKVIVWDSFTTN----------KEHAVTMPCTWVMACAYAP-SGCA  120 (354)
T ss_dssp             CEEEEE-ECCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTCC----------EEEEEECSSSCCCEEEECT-TSSE
T ss_pred             EEEEEe-cCCCCeEEEEEECCC--CCEEEEEeCCCeEEEEECCCCC----------cceEEecCCCCEEEEEECC-CCCE
Confidence            445667 799999999999999  7999999999999999987532          2566777889999999999 6689


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (737)
Q Consensus       163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i  242 (737)
                      +++++.|+.+++|++........     .              ........|...|.+++|+|+ +..|++++.|+.|++
T Consensus       121 lasg~~d~~i~v~~~~~~~~~~~-----~--------------~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~l  180 (354)
T 2pbi_B          121 IACGGLDNKCSVYPLTFDKNENM-----A--------------AKKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCAL  180 (354)
T ss_dssp             EEEESTTSEEEEEECCCCTTCCS-----G--------------GGCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEE
T ss_pred             EEEeeCCCCEEEEEEeccccccc-----c--------------ccceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEE
Confidence            99999999999999876532100     0              001112246788999999997 579999999999999


Q ss_pred             EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC--CCCEEEEEeCCCeEEEEEcCCC
Q 004685          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp--~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ||+++++.+..+                    .+|.. .|.+++|+|  +|.+|++|+.||.|++||+.++
T Consensus       181 wd~~~~~~~~~~--------------------~~h~~-~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~  230 (354)
T 2pbi_B          181 WDVESGQLLQSF--------------------HGHGA-DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG  230 (354)
T ss_dssp             EETTTCCEEEEE--------------------ECCSS-CEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred             EeCCCCeEEEEE--------------------cCCCC-CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            999987655443                    22333 599999987  5789999999999999998874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.3e-32  Score=298.51  Aligned_cols=198  Identities=14%  Similarity=0.294  Sum_probs=163.9

Q ss_pred             ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        46 l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~  125 (737)
                      ..+|...|.|++|  ++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|  +  +.+|++|+.||.|++||+.
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~--~--~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY--D--ERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC--C--SSEEEEEETTSCEEEEESS
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE--C--CCEEEEEcCCCeEEEEECC
Confidence            3457778998887  7899999999999999999999999988 799999999999  4  6899999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                      .+.          .+..+.+|...|.+++|++   .++++|+.||.|++||++++...                      
T Consensus       202 ~~~----------~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~----------------------  246 (435)
T 1p22_A          202 TGE----------MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI----------------------  246 (435)
T ss_dssp             SCC----------EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC----------------------
T ss_pred             CCc----------EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc----------------------
Confidence            642          3677889999999999964   58999999999999999876532                      


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  285 (737)
                      ........|...|.+++|+   ++++++|+.|+.|++||+++++.+..+.                    +|.. .|.++
T Consensus       247 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------------------~~~~-~v~~~  302 (435)
T 1p22_A          247 TLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLN--------------------GHKR-GIACL  302 (435)
T ss_dssp             EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSS-CEEEE
T ss_pred             eeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEc--------------------CCCC-cEEEE
Confidence            0112234567889999994   4699999999999999999876554432                    2332 58888


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          286 TFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       286 ~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +|  ++.+|++|+.||.|++||+.++
T Consensus       303 ~~--~~~~l~~g~~dg~i~iwd~~~~  326 (435)
T 1p22_A          303 QY--RDRLVVSGSSDNTIRLWDIECG  326 (435)
T ss_dssp             EE--ETTEEEEEETTSCEEEEETTTC
T ss_pred             Ee--CCCEEEEEeCCCeEEEEECCCC
Confidence            88  5789999999999999998874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.7e-32  Score=288.71  Aligned_cols=236  Identities=13%  Similarity=0.132  Sum_probs=179.1

Q ss_pred             ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc
Q 004685           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~  118 (737)
                      ...+.+|.+.|++|+|+|++++||+|+.||.|+|||+.++    +....+ .+|...|.+++|+|..++.+|++|+.||.
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            3567899999999999999999999999999999999876    456666 68999999999999311689999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      |++||+........ .....++..+..|...|.+++|+|+. +.+|++++.||.|++||+++.+.......     ....
T Consensus        83 v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~  156 (351)
T 3f3f_A           83 VKLWEEDPDQEECS-GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL-----TSEM  156 (351)
T ss_dssp             EEEEEECTTSCTTS-SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE-----EEEE
T ss_pred             EEEEecCCCccccc-ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc-----cccc
Confidence            99999986432210 11123466778899999999999942 68999999999999999998775421100     0000


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecC--CCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISST--RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                      .       ........+...+.+++|+|+  .+.++++++.|+.+.+|+..........           .     +  .
T Consensus       157 ~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~--~  211 (351)
T 3f3f_A          157 K-------VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA-----------K-----L--P  211 (351)
T ss_dssp             E-------SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE-----------E-----C--C
T ss_pred             c-------ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee-----------e-----c--C
Confidence            0       001122356778999999996  3689999999999988887665421110           0     0  2


Q ss_pred             CCcccceeEEEEcCCC----CEEEEEeCCCeEEEEEcCCC
Q 004685          276 GRSSLHLTHVTFSPNG----EEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g----~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +|.. .|++++|+|++    .+|++++.||.|++||+..+
T Consensus       212 ~h~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          212 GHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             CCCS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             CCCc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            2333 69999999998    89999999999999999874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.3e-33  Score=296.53  Aligned_cols=198  Identities=12%  Similarity=0.141  Sum_probs=124.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC------CCcEEEEecCCCC
Q 004685           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG------DAEVRLFNLSRFS  128 (737)
Q Consensus        55 ~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~------dg~I~iwd~~~~~  128 (737)
                      .+.+.+++.++. ++.+.....|++....    . ..|...|.+++|+|+  |.+|++|+.      |+.|++|+.....
T Consensus        10 g~d~g~~~~~~~-~~g~~~~~~w~~p~~~----p-~~H~~~V~~v~fSpD--G~~las~s~d~~~~wd~~v~~~~~~~~~   81 (357)
T 4g56_B           10 GVDLGTENLYFQ-SNGSSKGSAWGRPVTA----P-ACMEVQIGAVRYRRD--GALLLAASSLSSRTWGGSIWVFKDPEGA   81 (357)
T ss_dssp             ------------------------------------CCCSEEEEEEECSS--SCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred             CCCCCccceEEe-cCCCccccccCCCCCC----c-ccccCCEEEEEECCC--CCEEEEEcCCCCccccCeEEEEECCCCC
Confidence            455666555544 4446778999976432    2 469999999999999  899999997      7789999887543


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                      ...      ........|...|.+++|+| ++. +++++.||+|++||+.+++....                     ..
T Consensus        82 ~~~------~~~~~~~~~~~~V~~~~~s~-d~~-~l~~s~dg~v~lWd~~~~~~~~~---------------------~~  132 (357)
T 4g56_B           82 PNE------SLCTAGVQTEAGVTDVAWVS-EKG-ILVASDSGAVELWEILEKESLLV---------------------NK  132 (357)
T ss_dssp             -CG------GGCSEEEECSSCEEEEEEET-TTE-EEEEETTSCEEEC--------CC---------------------CC
T ss_pred             cce------eEecccCCCCCCEEEEEEcC-CCC-EEEEECCCEEEEeeccccceeEE---------------------Ee
Confidence            221      12344557889999999999 444 55788899999999988763310                     01


Q ss_pred             cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (737)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s  288 (737)
                      .....|...|.+++|+|+ +++|++|+.|+.|++||+++++.+..+                    .+|.. .|++++|+
T Consensus       133 ~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd~~~~~~~~~~--------------------~~h~~-~v~~v~~s  190 (357)
T 4g56_B          133 FAKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVKVWDLSQKAVLKSY--------------------NAHSS-EVNCVAAC  190 (357)
T ss_dssp             EEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEEEC
T ss_pred             eccCCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEE--------------------cCCCC-CEEEEEEc
Confidence            112357789999999997 689999999999999999987655443                    22333 59999999


Q ss_pred             CCCC-EEEEEeCCCeEEEEEcCCC
Q 004685          289 PNGE-EVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       289 p~g~-~l~~g~~dg~v~iwd~~~~  311 (737)
                      |++. ++++++.|+.|++||+.++
T Consensus       191 ~~~~~~~~s~~~dg~v~~wd~~~~  214 (357)
T 4g56_B          191 PGKDTIFLSCGEDGRILLWDTRKP  214 (357)
T ss_dssp             TTCSSCEEEEETTSCEEECCTTSS
T ss_pred             cCCCceeeeeccCCceEEEECCCC
Confidence            9875 7889999999999998874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=291.00  Aligned_cols=212  Identities=16%  Similarity=0.180  Sum_probs=164.9

Q ss_pred             ccccccceeecccCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCC-CeEE-EEEcccCccceEEEEEeeCCCCCEEE
Q 004685           37 VRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSS-RKLL-HSIETGHSANVFCTKFVPETSDELVV  111 (737)
Q Consensus        37 ~~~~~~~~~l~~H~~~V~~l~~s~~---g~~lasgs~dg~V~vwd~~~-~~~~-~~~~~~h~~~V~~v~~sp~~~~~~l~  111 (737)
                      ....+.+..+.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+ +..+ ..+ .+|...|.+++|+|+  +.+|+
T Consensus        26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~  102 (368)
T 3mmy_A           26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDD--GSKVF  102 (368)
T ss_dssp             SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE-EECSSCEEEEEECTT--SSEEE
T ss_pred             CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe-ccccCCEEEEEECcC--CCEEE
Confidence            4566778889999999999999998   69999999999999999997 5555 555 789999999999998  79999


Q ss_pred             EEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEE--ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCC
Q 004685          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV--EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (737)
Q Consensus       112 sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~  189 (737)
                      +++.||.|++||+....           ...+..|...|.+++|  +| ++.+|++++.|+.|++||+++++..      
T Consensus       103 s~~~dg~v~iwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~------  164 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQ-----------AIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPM------  164 (368)
T ss_dssp             EEETTSEEEEEETTTTE-----------EEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCS------
T ss_pred             EEcCCCcEEEEEcCCCC-----------ceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEE------
Confidence            99999999999998632           3346679999999999  77 5688999999999999999987643      


Q ss_pred             CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccc
Q 004685          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (737)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (737)
                           ..           +.    ....+.++.+.+   ..+++++.++.+++|+++.........              
T Consensus       165 -----~~-----------~~----~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~--------------  207 (368)
T 3mmy_A          165 -----MV-----------LQ----LPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRI--------------  207 (368)
T ss_dssp             -----EE-----------EE----CSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEEC--------------
T ss_pred             -----EE-----------Ee----cCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhc--------------
Confidence                 00           00    112456666664   478888899999999998654221110              


Q ss_pred             ccccCCCCcccceeEEEEcCCCCE----EEEEeCCCeEEEEEcCCC
Q 004685          270 MHLSEHGRSSLHLTHVTFSPNGEE----VLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       270 ~~~~~~~~~~~~i~~v~~sp~g~~----l~~g~~dg~v~iwd~~~~  311 (737)
                           .......+.++++.++...    +++++.||.|++||+...
T Consensus       208 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  248 (368)
T 3mmy_A          208 -----ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP  248 (368)
T ss_dssp             -----CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred             -----cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence                 0011113566666665554    999999999999999874

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.5e-32  Score=286.89  Aligned_cols=228  Identities=15%  Similarity=0.220  Sum_probs=191.7

Q ss_pred             cCCCCCcccccccccccccc---cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccce
Q 004685           20 TDTRPDVNHSLQMHSSLVRR---LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV   96 (737)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V   96 (737)
                      +..+.+.++++++|+.....   ..+..++++|...|++++|+|++++|++|+.|++|+|||+.+++.+..+ .+|...|
T Consensus        32 ~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v  110 (319)
T 3frx_A           32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF-VGHKSDV  110 (319)
T ss_dssp             EEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCE
T ss_pred             EEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcE
Confidence            34567789999999854322   3457789999999999999999999999999999999999999999988 7999999


Q ss_pred             EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC-----CCcEEEEEeCCCc
Q 004685           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-----NPHVVWSASEDGT  171 (737)
Q Consensus        97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-----~~~~l~s~s~Dg~  171 (737)
                      .+++|+|+  +.+|++|+.|++|++||++.           ..+..+.+|...|.++.|.|.     ++.++++++.|+.
T Consensus       111 ~~~~~~~~--~~~l~s~s~D~~i~vwd~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~  177 (319)
T 3frx_A          111 MSVDIDKK--ASMIISGSRDKTIKVWTIKG-----------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM  177 (319)
T ss_dssp             EEEEECTT--SCEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSC
T ss_pred             EEEEEcCC--CCEEEEEeCCCeEEEEECCC-----------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCE
Confidence            99999999  79999999999999999973           236778899999999999984     2348999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004685          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (737)
Q Consensus       172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~  251 (737)
                      |++||++..+.                         ......|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+
T Consensus       178 i~~wd~~~~~~-------------------------~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~~~  231 (319)
T 3frx_A          178 VKAWNLNQFQI-------------------------EADFIGHNSNINTLTASPD-GTLIASAGKDGEIMLWNLAAKKAM  231 (319)
T ss_dssp             EEEEETTTTEE-------------------------EEEECCCCSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEE
T ss_pred             EEEEECCcchh-------------------------heeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEE
Confidence            99999987642                         1223457789999999997 689999999999999999987654


Q ss_pred             ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      ..+.                    .+  ..|.+++|+|++.+|++++.+ .+++|++..
T Consensus       232 ~~~~--------------------~~--~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~  267 (319)
T 3frx_A          232 YTLS--------------------AQ--DEVFSLAFSPNRYWLAAATAT-GIKVFSLDP  267 (319)
T ss_dssp             EEEE--------------------CC--SCEEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred             EEec--------------------CC--CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence            4331                    11  159999999999998887765 699999876

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.8e-32  Score=286.17  Aligned_cols=206  Identities=12%  Similarity=0.099  Sum_probs=164.7

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      |.++|.+++|+|+|++++++..++.+.+|+.......... .+|...|.+++|+|+  +.+|++++ ||.|++||+....
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~-dg~i~iw~~~~~~   83 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISHPG   83 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS--SSEEEEEC-BSEEEEEETTSTT
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC--CcEEEEcC-CCeEEEEECCCCC
Confidence            5678999999999999999988888877776655544444 479999999999999  79999998 9999999998643


Q ss_pred             CCCCCCCCCCCceeec--cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685          129 GRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (737)
                      ..       .....+.  .|...|.+++|+| ++++|++++.|+.|++||+..++..                       
T Consensus        84 ~~-------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~-----------------------  132 (337)
T 1gxr_A           84 NK-------SPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPR-----------------------  132 (337)
T ss_dssp             CC-------SCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--E-----------------------
T ss_pred             ce-------eeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcc-----------------------
Confidence            22       1233333  7899999999999 6689999999999999999876521                       


Q ss_pred             eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004685          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (737)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  286 (737)
                      .......+...+.+++|+|+ ++++++++.|+.|++||+++++.+..+.                    +|.. .|.+++
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~--------------------~~~~-~i~~~~  190 (337)
T 1gxr_A          133 IKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------------------GHTD-GASCID  190 (337)
T ss_dssp             EEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSS-CEEEEE
T ss_pred             eeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeee--------------------cccC-ceEEEE
Confidence            11122345678999999997 6899999999999999999876544331                    1222 599999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          287 FSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       287 ~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      |+|++++|++++.||.|++||+.++
T Consensus       191 ~~~~~~~l~~~~~dg~i~~~d~~~~  215 (337)
T 1gxr_A          191 ISNDGTKLWTGGLDNTVRSWDLREG  215 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ECCCCCEEEEEecCCcEEEEECCCC
Confidence            9999999999999999999998874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-32  Score=295.49  Aligned_cols=160  Identities=18%  Similarity=0.213  Sum_probs=127.8

Q ss_pred             cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeecc------------------CCCceeE
Q 004685           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC------------------HTRRVKK  152 (737)
Q Consensus        91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~------------------h~~~v~~  152 (737)
                      .|...|.+++|+|+  +.+|++|+ ++.+++|++..+..          +..+..                  +...|++
T Consensus        62 ~h~~~V~~v~fspd--g~~la~g~-~~~v~i~~~~~g~~----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~  128 (393)
T 1erj_A           62 DHTSVVCCVKFSND--GEYLATGC-NKTTQVYRVSDGSL----------VARLSDDSAANKDPENLNTSSSPSSDLYIRS  128 (393)
T ss_dssp             ECSSCCCEEEECTT--SSEEEEEC-BSCEEEEETTTCCE----------EEEECC-----------------CCCCBEEE
T ss_pred             CCCCEEEEEEECCC--CCEEEEEc-CCcEEEEEecCCCE----------EEEecCccccccccccccccccCCCceeEEE
Confidence            59999999999999  79999876 78999999976432          222222                  2335999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEE
Q 004685          153 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL  232 (737)
Q Consensus       153 l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~  232 (737)
                      ++|+| ++.+|++|+.|+.|++||+.+++.                         +.....|...|.+++|+|+ +.+|+
T Consensus       129 v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~p~-~~~l~  181 (393)
T 1erj_A          129 VCFSP-DGKFLATGAEDRLIRIWDIENRKI-------------------------VMILQGHEQDIYSLDYFPS-GDKLV  181 (393)
T ss_dssp             EEECT-TSSEEEEEETTSCEEEEETTTTEE-------------------------EEEECCCSSCEEEEEECTT-SSEEE
T ss_pred             EEECC-CCCEEEEEcCCCeEEEEECCCCcE-------------------------EEEEccCCCCEEEEEEcCC-CCEEE
Confidence            99999 668999999999999999987642                         2223467789999999997 58999


Q ss_pred             EEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 004685          233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       233 t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +++.|+.|++||+++++....+.                     +. ..+.+++|+| ++.+|++|+.|+.|++||+.++
T Consensus       182 s~s~d~~v~iwd~~~~~~~~~~~---------------------~~-~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~  239 (393)
T 1erj_A          182 SGSGDRTVRIWDLRTGQCSLTLS---------------------IE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG  239 (393)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE---------------------CS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTC
T ss_pred             EecCCCcEEEEECCCCeeEEEEE---------------------cC-CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            99999999999999865433221                     11 1489999999 8999999999999999999875


Q ss_pred             C
Q 004685          312 G  312 (737)
Q Consensus       312 ~  312 (737)
                      .
T Consensus       240 ~  240 (393)
T 1erj_A          240 F  240 (393)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3e-31  Score=292.27  Aligned_cols=234  Identities=19%  Similarity=0.224  Sum_probs=189.5

Q ss_pred             CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004685           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~  101 (737)
                      .+.+.++.|++|+  ..+.+.+.++.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.+..+ .+|...|.+++|
T Consensus       136 ~sgs~dg~i~vwd--~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~  211 (464)
T 3v7d_B          136 ITGADDKMIRVYD--SINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDI  211 (464)
T ss_dssp             EEEETTSCEEEEE--TTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEE
T ss_pred             EEEcCCCcEEEEE--CCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEE
Confidence            3456789999999  56777889999999999999999988 9999999999999999999999988 789999999999


Q ss_pred             eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC-------------CCCCceeeccCCCceeEEEEecCCCcEEEEEeC
Q 004685          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN-------------AITPSALYQCHTRRVKKLAVEVGNPHVVWSASE  168 (737)
Q Consensus       102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------------~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  168 (737)
                      ++..++.+|++|+.|+.|++||+...........             .......+.+|...|.++..   ++.++++++.
T Consensus       212 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~  288 (464)
T 3v7d_B          212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG---HGNIVVSGSY  288 (464)
T ss_dssp             EESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE---ETTEEEEEET
T ss_pred             ecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC---CCCEEEEEeC
Confidence            9743368999999999999999986432211000             00014467788899988854   4579999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004685          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (737)
Q Consensus       169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~  248 (737)
                      |+.|++||+++++.                         +.....|...|.+++|+|+ +..+++|+.|+.|++||++++
T Consensus       289 d~~i~vwd~~~~~~-------------------------~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          289 DNTLIVWDVAQMKC-------------------------LYILSGHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             TSCEEEEETTTTEE-------------------------EEEECCCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTT
T ss_pred             CCeEEEEECCCCcE-------------------------EEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Confidence            99999999987652                         2223457788999999997 589999999999999999987


Q ss_pred             CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +.+..+                    .+|.. .|.+++|+  +.+|++++.||.|++||+.++
T Consensus       343 ~~~~~~--------------------~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~  382 (464)
T 3v7d_B          343 ELMYTL--------------------QGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDY  382 (464)
T ss_dssp             EEEEEE--------------------CCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred             cEEEEE--------------------eCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCC
Confidence            655444                    22333 59999997  579999999999999998874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-32  Score=282.35  Aligned_cols=245  Identities=16%  Similarity=0.181  Sum_probs=183.5

Q ss_pred             cCCCCCcccccccccccccccccceee-cc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEEcc
Q 004685           20 TDTRPDVNHSLQMHSSLVRRLSQEREL-EG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIET   90 (737)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~-------~~~~~~~~~   90 (737)
                      +..+.+.++++++|+......+....+ .+ |.+.|++++|+|++++|++|+.|++|+|||+..       .+.+..+ .
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~  104 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-E  104 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE-C
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE-c
Confidence            445667889999999655445566666 45 999999999999999999999999999999853       3456667 7


Q ss_pred             cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004685           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (737)
Q Consensus        91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg  170 (737)
                      +|...|.+++|+|+  +.+|++|+.|++|++||++.....      .+++..+.+|...|.+++|+| ++.+|++++.|+
T Consensus       105 ~h~~~V~~v~~sp~--g~~las~s~D~~v~iwd~~~~~~~------~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~  175 (330)
T 2hes_X          105 GHENEVKGVAWSND--GYYLATCSRDKSVWIWETDESGEE------YECISVLQEHSQDVKHVIWHP-SEALLASSSYDD  175 (330)
T ss_dssp             ----CEEEEEECTT--SCEEEEEETTSCEEEEECCTTCCC------CEEEEEECCCSSCEEEEEECS-SSSEEEEEETTS
T ss_pred             CCCCcEEEEEECCC--CCEEEEEeCCCEEEEEeccCCCCC------eEEEEEeccCCCceEEEEECC-CCCEEEEEcCCC
Confidence            89999999999999  799999999999999999542111      133567889999999999999 668999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC-CcEEEEEeCCCcEEEEECCCCC
Q 004685          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      +|++||+..+..                       ..+....+|...|.+++|+|+. +..|++++.|+.|++||++...
T Consensus       176 ~i~iW~~~~~~~-----------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~  232 (330)
T 2hes_X          176 TVRIWKDYDDDW-----------------------ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD  232 (330)
T ss_dssp             CEEEEEEETTEE-----------------------EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred             eEEEEECCCCCe-----------------------eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence            999999876420                       1123345678899999999973 3589999999999999997542


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      ....           ..+...... .+.+...|.+++|++++ +|++++.||.|++||..+
T Consensus       233 ~~~~-----------~~~~~~~~~-~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          233 EDDQ-----------QEWVCEAIL-PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             TTSC-----------EEEEEEEEC-CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred             cccc-----------ceeEEeeec-ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence            1100           000000000 11122369999999766 799999999999999765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.6e-31  Score=274.53  Aligned_cols=168  Identities=20%  Similarity=0.294  Sum_probs=140.4

Q ss_pred             eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcE
Q 004685           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (737)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  162 (737)
                      .....+ .+|...|.+++|+|+  +.+|++|+.||.|++|++....          ....+.+|...|.+++|+| ++++
T Consensus        14 ~~~~~~-~gh~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~~~~~~----------~~~~~~~h~~~v~~~~~~~-~~~~   79 (312)
T 4ery_A           14 ALKFTL-AGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGK----------FEKTISGHKLGISDVAWSS-DSNL   79 (312)
T ss_dssp             EEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCC----------EEEEECCCSSCEEEEEECT-TSSE
T ss_pred             eeEEEE-cccCCcEEEEEECCC--CCEEEEeeCCCeEEEEeCCCcc----------cchhhccCCCceEEEEEcC-CCCE
Confidence            344556 799999999999999  7999999999999999987532          2567788999999999999 6689


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (737)
Q Consensus       163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i  242 (737)
                      |++++.|+.|++||+++++..                         .....|...|.+++|+|+ +++|++|+.|+.|++
T Consensus        80 l~s~~~d~~i~vwd~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~i  133 (312)
T 4ery_A           80 LVSASDDKTLKIWDVSSGKCL-------------------------KTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI  133 (312)
T ss_dssp             EEEEETTSEEEEEETTTCCEE-------------------------EEEECCSSCEEEEEECSS-SSEEEEEETTSCEEE
T ss_pred             EEEECCCCEEEEEECCCCcEE-------------------------EEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEE
Confidence            999999999999999876521                         122346778999999997 589999999999999


Q ss_pred             EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ||+++++.+..+.                    .|.. +|.+++|+|++++|++++.||.|++||+.++
T Consensus       134 wd~~~~~~~~~~~--------------------~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~  181 (312)
T 4ery_A          134 WDVKTGKCLKTLP--------------------AHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG  181 (312)
T ss_dssp             EETTTCCEEEEEC--------------------CCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EECCCCEEEEEec--------------------CCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            9999876544331                    1222 5999999999999999999999999998874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.7e-31  Score=281.90  Aligned_cols=232  Identities=16%  Similarity=0.234  Sum_probs=183.0

Q ss_pred             cCCCCCccccccccccccc-----ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCcc
Q 004685           20 TDTRPDVNHSLQMHSSLVR-----RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA   94 (737)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~   94 (737)
                      +..+.+.+++|++|+....     ...+...+.+|...|++++|+|++.+|++|+.|++|++||+.+++.+..+ .+|..
T Consensus        41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~  119 (343)
T 2xzm_R           41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQS  119 (343)
T ss_dssp             EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE-ECCCS
T ss_pred             EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCC
Confidence            3445678899999995432     23456789999999999999999999999999999999999999999888 79999


Q ss_pred             ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC---------CcEEEE
Q 004685           95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN---------PHVVWS  165 (737)
Q Consensus        95 ~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---------~~~l~s  165 (737)
                      .|.+++|+|+  +.+|++|+.|+.|++||+.....        ........|...|.+++|+|..         ..+|++
T Consensus       120 ~v~~v~~sp~--~~~l~s~~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s  189 (343)
T 2xzm_R          120 EVYSVAFSPD--NRQILSAGAEREIKLWNILGECK--------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS  189 (343)
T ss_dssp             CEEEEEECSS--TTEEEEEETTSCEEEEESSSCEE--------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEE
T ss_pred             cEEEEEECCC--CCEEEEEcCCCEEEEEeccCCce--------eeeecccCCCceeeeeeeccccccccccCCCCCEEEE
Confidence            9999999999  79999999999999999973110        0012233788999999999954         268999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~  245 (737)
                      ++.|+.|++||... .                         .......|...|.+++|+|+ +++|++|+.|+.|++||+
T Consensus       190 ~~~d~~i~iwd~~~-~-------------------------~~~~~~~h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          190 VGWDGRLKVWNTNF-Q-------------------------IRYTFKAHESNVNHLSISPN-GKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             EETTSEEEEEETTT-E-------------------------EEEEEECCSSCEEEEEECTT-SSEEEEEETTCEEEEEES
T ss_pred             EcCCCEEEEEcCCC-c-------------------------eeEEEcCccccceEEEECCC-CCEEEEEcCCCeEEEEEC
Confidence            99999999999432 1                         01122356788999999997 689999999999999999


Q ss_pred             CCCC-CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          246 RMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       246 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      +... ....+                   ..   ...|.+++|+|++.++++ +.|+.|++||+.+..
T Consensus       243 ~~~~~~~~~~-------------------~~---~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          243 LNLTYPQREF-------------------DA---GSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQS  287 (343)
T ss_dssp             SCCSSCSEEE-------------------EC---SSCEEEEEECSSSCEEEE-EESSCEEEEESSSCC
T ss_pred             CCCcccceee-------------------cC---CCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCC
Confidence            5432 11111                   01   124999999999987764 467789999998743

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.9e-31  Score=286.63  Aligned_cols=229  Identities=16%  Similarity=0.242  Sum_probs=187.0

Q ss_pred             CcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeC
Q 004685           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (737)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~  104 (737)
                      +.+++|++|+...........+.+|...|++|+|+|+|++||+|+.||.|+|||+.+++.+..+ .+|...+.+++|++ 
T Consensus       122 gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~~~-  199 (420)
T 4gga_A          122 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNS-  199 (420)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEET-
T ss_pred             EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEeeCC-
Confidence            4578999999554444444455678899999999999999999999999999999999999999 79999999988754 


Q ss_pred             CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 004685          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (737)
Q Consensus       105 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~  184 (737)
                         .+|++|+.|+.+++||.....         ..+..+.+|...+..+.|+| ++.++++++.|+.+++|++..++...
T Consensus       200 ---~~l~sgs~d~~i~~~d~~~~~---------~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~  266 (420)
T 4gga_A          200 ---YILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGW  266 (420)
T ss_dssp             ---TEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCS
T ss_pred             ---CEEEEEeCCCceeEeeecccc---------eeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccc
Confidence               699999999999999988533         23567889999999999999 66899999999999999998875321


Q ss_pred             CCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEE--eCCCcEEEEECCCCCCcccccCCCCCCC
Q 004685          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG--GSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (737)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~--s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  262 (737)
                                           ..+.....+...|.+++|+|.++.+++++  +.|+.|++||++++.....+.       
T Consensus       267 ---------------------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-------  318 (420)
T 4gga_A          267 ---------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-------  318 (420)
T ss_dssp             ---------------------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-------
T ss_pred             ---------------------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-------
Confidence                                 11223345678899999999888888765  479999999999876544431       


Q ss_pred             CccccccccccCCCCcccceeEEEEcCCCCEEEEEe--CCCeEEEEEcCCC
Q 004685          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA  311 (737)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~--~dg~v~iwd~~~~  311 (737)
                                   .+.  .+.++.|+|++..+++++  .|+.|+|||+.++
T Consensus       319 -------------~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~  354 (420)
T 4gga_A          319 -------------AHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  354 (420)
T ss_dssp             -------------CSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             -------------ccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence                         122  489999999999998876  5899999998763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=304.38  Aligned_cols=216  Identities=11%  Similarity=0.102  Sum_probs=157.8

Q ss_pred             cCCceEEEEEcCCC---------CEEEE-------------------EeCCCcEEEEECCCCeEE----EEEcccCccce
Q 004685           49 HQGCVNAISWNSKG---------SLLIS-------------------GSDDTHINVWSYSSRKLL----HSIETGHSANV   96 (737)
Q Consensus        49 H~~~V~~l~~s~~g---------~~las-------------------gs~dg~V~vwd~~~~~~~----~~~~~~h~~~V   96 (737)
                      +.+.|.+|+|+|++         ++||+                   |+.|++|+|||+.+++..    ..+ ..|...|
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l-~~~~~~V  210 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI-VHSFGEV  210 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE-EECCCSE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE-EecCCcE
Confidence            67899999999976         56666                   457889999999877642    334 4678899


Q ss_pred             EEEEEeeC----CCCCEEEEEECCCcEEEEecCCCCCCCC-CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc
Q 004685           97 FCTKFVPE----TSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT  171 (737)
Q Consensus        97 ~~v~~sp~----~~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~  171 (737)
                      .+++|+|+    .++.+|++++.||+|+|||+........ ......+...+.+|...|++++|++ + ..|++|+.||+
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~Dgt  288 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGF  288 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSE
T ss_pred             EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCE
Confidence            99999996    1247999999999999999975432100 0001133457788999999999998 4 47999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEE--EEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC--DISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      |++||++++..+                        ......|...|.++  +|+|++.++|++|+.|++|+|||+++.+
T Consensus       289 V~lWD~~~~~~~------------------------~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~  344 (524)
T 2j04_B          289 VAEFDLTDPEVP------------------------SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA  344 (524)
T ss_dssp             EEEEETTBCSSC------------------------SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred             EEEEECCCCCCc------------------------eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence            999999875321                        11123577889999  4666522799999999999999998765


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcc-cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ....+.                    +|.. ..|.+++|+|+++.+++++.|++|++||++++
T Consensus       345 ~~~~~~--------------------~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~  387 (524)
T 2j04_B          345 TTKTTV--------------------SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA  387 (524)
T ss_dssp             HHCEEE--------------------EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT
T ss_pred             cccccc--------------------cccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc
Confidence            332221                    1111 13788999999999999999999999998763

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-31  Score=281.13  Aligned_cols=132  Identities=18%  Similarity=0.262  Sum_probs=111.9

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~  118 (737)
                      ++...+++|.+.|++++|+|++++||+|+.||.|+|||+.  +++.+..+ .+|...|.+++|+|+.++.+|++|+.||.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            4567889999999999999999999999999999999998  55667777 78999999999987633589999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCC
Q 004685          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGS  181 (737)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~  181 (737)
                      |++||+.....        .....+..|...|.+++|+|+. +.+|++++.|+.|++||++...
T Consensus        81 v~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  136 (379)
T 3jrp_A           81 VLIWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  136 (379)
T ss_dssp             EEEEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred             EEEEEcCCCce--------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence            99999986421        1356777899999999999942 6899999999999999998764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.5e-31  Score=289.36  Aligned_cols=206  Identities=14%  Similarity=0.192  Sum_probs=149.3

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee-CCCCCEEEEEECCCcEEEEecCCCCCCCCCCC
Q 004685           57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  135 (737)
Q Consensus        57 ~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  135 (737)
                      .|+|++..+++++      .|+ .+++.+..+..+|...|++++|+| +  +.+|++|+.||+|++||+.......    
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~--~~~l~s~s~dg~v~vwd~~~~~~~~----  100 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGE--TPYLITGSDQGVIKIWNLKEIIVGE----  100 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSS--SCEEEEEETTSEEEEEEHHHHHTTC----
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCC--CCEEEEecCCceEEEeECcccccCc----
Confidence            3788888887765      388 456777777678999999999999 7  7999999999999999987511110    


Q ss_pred             CCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC---CCCCCCCCCCCCCccceEEEeccCCceeeccCCC
Q 004685          136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR---QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  212 (737)
Q Consensus       136 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (737)
                      ...+...+ .|...|++++|+| ++.+|++++.||.|++||+.   .++..           ....   ......+...+
T Consensus       101 ~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----------~~~~---~~~i~~~~~~~  164 (437)
T 3gre_A          101 VYSSSLTY-DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEV-----------KFLN---CECIRKINLKN  164 (437)
T ss_dssp             CCSCSEEE-ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEE-----------EEEE---EEEEEEEEGGG
T ss_pred             ccceeeec-cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCcee-----------eccc---cceeEEEEccC
Confidence            01112333 5999999999999 66899999999999999995   33211           0000   00111111111


Q ss_pred             -CCccceEEEE--EecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004685          213 -KQTLSLKSCD--ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (737)
Q Consensus       213 -~~~~~v~~i~--~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  289 (737)
                       .+...+.++.  ++++ +.+|++++.|+.|++||+++++.+..+..                  ..|. ..|++++|+|
T Consensus       165 ~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------------~~h~-~~v~~~~~s~  224 (437)
T 3gre_A          165 FGKNEYAVRMRAFVNEE-KSLLVALTNLSRVIIFDIRTLERLQIIEN------------------SPRH-GAVSSICIDE  224 (437)
T ss_dssp             GSSCCCEEEEEEEECSS-CEEEEEEETTSEEEEEETTTCCEEEEEEC------------------CGGG-CCEEEEEECT
T ss_pred             cccccCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeeEEEcc------------------CCCC-CceEEEEECC
Confidence             1345667777  4565 68999999999999999998775544421                  0122 2699999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCC
Q 004685          290 NGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       290 ~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ++.+|++|+.||.|++||++++
T Consensus       225 ~~~~l~s~~~dg~i~iwd~~~~  246 (437)
T 3gre_A          225 ECCVLILGTTRGIIDIWDIRFN  246 (437)
T ss_dssp             TSCEEEEEETTSCEEEEETTTT
T ss_pred             CCCEEEEEcCCCeEEEEEcCCc
Confidence            9999999999999999999874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4.4e-30  Score=277.29  Aligned_cols=224  Identities=16%  Similarity=0.267  Sum_probs=186.2

Q ss_pred             CCcccccccccccccccccceeecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s  102 (737)
                      .+.++.|++|+.  .+.+....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|+
T Consensus       109 ~~~d~~v~lw~~--~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~  185 (401)
T 4aez_A          109 VALERNVYVWNA--DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWN  185 (401)
T ss_dssp             EEETTEEEEEET--TTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEE
T ss_pred             EECCCeEEEeeC--CCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEEC
Confidence            446788999994  44455555554 8899999999999999999999999999999999999998 7999999999994


Q ss_pred             eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                          +.+|++|+.||.|++||++...         .....+.+|...|.+++|+| ++.+|++++.|+.|++||++++..
T Consensus       186 ----~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~  251 (401)
T 4aez_A          186 ----RHVLSSGSRSGAIHHHDVRIAN---------HQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIP  251 (401)
T ss_dssp             ----TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSE
T ss_pred             ----CCEEEEEcCCCCEEEEecccCc---------ceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCc
Confidence                4699999999999999998532         23677888999999999999 668999999999999999987652


Q ss_pred             CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe--CCCcEEEEECCCCCCcccccCCCCC
Q 004685          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSP  260 (737)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s--~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (737)
                      .                         .....|...|.+++|+|++..++++++  .|+.|++||+++++.+..+.     
T Consensus       252 ~-------------------------~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-----  301 (401)
T 4aez_A          252 K-------------------------FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-----  301 (401)
T ss_dssp             E-------------------------EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-----
T ss_pred             c-------------------------EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-----
Confidence            1                         122346778999999998777888876  79999999999876554431     


Q ss_pred             CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe--CCCeEEEEEcCCC
Q 004685          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA  311 (737)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~--~dg~v~iwd~~~~  311 (737)
                                      + ...|.+++|+|++++|++++  .||.|++||+.++
T Consensus       302 ----------------~-~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          302 ----------------A-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             ----------------C-SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             ----------------C-CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence                            1 12599999999999999954  7999999998763

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.2e-31  Score=283.92  Aligned_cols=224  Identities=12%  Similarity=0.077  Sum_probs=145.2

Q ss_pred             CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCC-EEEEEECCCcEEEEec----CCCCC------CCCCCCCCCCc
Q 004685           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNL----SRFSG------RGLDDNAITPS  140 (737)
Q Consensus        72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~----~~~~~------~~~~~~~~~~~  140 (737)
                      ..+.+|++......... ..|...|.+++|+|+  +. +|++|+.||.|++|++    ..+..      ...........
T Consensus        25 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (425)
T 1r5m_A           25 SIDSSDDLDGFVKILKE-IVKLDNIVSSTWNPL--DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS  101 (425)
T ss_dssp             ---------CCCEECEE-EEECSCCSEEEECSS--CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC
T ss_pred             cccccccchhhhhheee-eeccCceEEEEECCC--CCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccc
Confidence            34567888766554444 457799999999999  67 9999999999999999    65331      00000000000


Q ss_pred             eeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEE
Q 004685          141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  220 (737)
Q Consensus       141 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  220 (737)
                      ....+|...|++++|+| ++.+|++++.||.|++||. ++.                         .+.....|...|.+
T Consensus       102 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~-~~~-------------------------~~~~~~~~~~~v~~  154 (425)
T 1r5m_A          102 ASSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLWNK-TGA-------------------------LLNVLNFHRAPIVS  154 (425)
T ss_dssp             ------CBCEEEEEECT-TSSEEEEEETTSCEEEEET-TSC-------------------------EEEEECCCCSCEEE
T ss_pred             ccccCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeC-CCC-------------------------eeeeccCCCccEEE
Confidence            11123688999999999 6689999999999999993 322                         12223356788999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC
Q 004685          221 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG  300 (737)
Q Consensus       221 i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d  300 (737)
                      ++|+|+ +++|++++.|+.|++||+++++.+..+.............      ........+.+++|+|++ .+++++.+
T Consensus       155 ~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~  226 (425)
T 1r5m_A          155 VKWNKD-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE------NHSGDGSLGVDVEWVDDD-KFVIPGPK  226 (425)
T ss_dssp             EEECTT-SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------------CCCBSCCEEEETT-EEEEECGG
T ss_pred             EEECCC-CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec------cccCCcceeeEEEEcCCC-EEEEEcCC
Confidence            999997 5899999999999999999887665553322111000000      000111138889999985 58899999


Q ss_pred             CeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004685          301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (737)
Q Consensus       301 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (737)
                      |.|++||+.++........+...+..++|+|+.
T Consensus       227 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  259 (425)
T 1r5m_A          227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN  259 (425)
T ss_dssp             GCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred             CeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence            999999999987666666777778888888853

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.7e-29  Score=275.22  Aligned_cols=220  Identities=15%  Similarity=0.196  Sum_probs=158.6

Q ss_pred             CceEEEEEcCCC----------CEEEEEeC----CCcEEEEECC--------------------------CCeEEEEEcc
Q 004685           51 GCVNAISWNSKG----------SLLISGSD----DTHINVWSYS--------------------------SRKLLHSIET   90 (737)
Q Consensus        51 ~~V~~l~~s~~g----------~~lasgs~----dg~V~vwd~~--------------------------~~~~~~~~~~   90 (737)
                      -+..++.|.|+.          .+|+.|+.    .+.|.++++.                          +++.......
T Consensus        46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  125 (430)
T 2xyi_A           46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI  125 (430)
T ss_dssp             SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred             CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence            467888888864          35777754    3456666532                          1122212225


Q ss_pred             cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004685           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (737)
Q Consensus        91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg  170 (737)
                      .|...|++++|+|+. +.+|++++.||.|++|++..............++..+.+|...|++++|+|.+..+|++|+.||
T Consensus       126 ~h~~~v~~l~~~p~~-~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  204 (430)
T 2xyi_A          126 NHEGEVNRARYMPQN-ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH  204 (430)
T ss_dssp             EESSCCSEEEEETTE-EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred             cCCCcEEEEEECCCC-CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence            799999999999963 5799999999999999998532111111123457788899999999999996655999999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC-
Q 004685          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-  249 (737)
Q Consensus       171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~-  249 (737)
                      .|++||+......          ...        .........|...|.+++|+|.++.+|++++.|+.|++||+++.. 
T Consensus       205 ~i~vwd~~~~~~~----------~~~--------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~  266 (430)
T 2xyi_A          205 TICLWDINATPKE----------HRV--------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT  266 (430)
T ss_dssp             CEEEEETTSCCBG----------GGE--------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred             eEEEEeCCCCCCC----------Cce--------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence            9999999875321          000        011222345778899999999767899999999999999999763 


Q ss_pred             --CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCC
Q 004685          250 --PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       250 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~  310 (737)
                        .+..+                    ..|.. .|++++|+|++. +|++|+.||.|++||+++
T Consensus       267 ~~~~~~~--------------------~~~~~-~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~  309 (430)
T 2xyi_A          267 SKPSHTV--------------------DAHTA-EVNCLSFNPYSEFILATGSADKTVALWDLRN  309 (430)
T ss_dssp             SSCSEEE--------------------ECCSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             CcceeEe--------------------ecCCC-CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence              11111                    12322 599999999987 688999999999999886

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.8e-30  Score=280.52  Aligned_cols=209  Identities=20%  Similarity=0.202  Sum_probs=165.1

Q ss_pred             ceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe----EEEEEcccCccceEEEEEee-CCCCCEEEEEECCCcEEEEecC
Q 004685           52 CVNAISWNSKGS-LLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        52 ~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~----~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~iwd~~  125 (737)
                      ....++++|+.. ++++|+.||.|+||++.+..    .+..+ .+|...|++++|+| +  +.+|++|+.||.|++||+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~--~~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHN--DNVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTC--TTEEEEEETTSEEEEEECC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCC--CCEEEEEeCCCeEEEEEcc
Confidence            455688988765 44568899999999997643    23344 68999999999999 6  7999999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                      ......   ....++..+.+|...|.+++|+|++..+|++++.|+.|++||+++++..                      
T Consensus       113 ~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~----------------------  167 (402)
T 2aq5_A          113 DGGLVL---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV----------------------  167 (402)
T ss_dssp             TTCCSS---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE----------------------
T ss_pred             CCCCcc---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc----------------------
Confidence            643210   0013467888999999999999965579999999999999999876521                      


Q ss_pred             eeccCC--CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685          206 RSLADP--PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (737)
Q Consensus       206 ~~~~~~--~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (737)
                         ...  ..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.                   .+|....+.
T Consensus       168 ---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------------~~~~~~~~~  224 (402)
T 2aq5_A          168 ---LTLGPDVHPDTIYSVDWSRD-GALICTSCRDKRVRVIEPRKGTVVAEKD-------------------RPHEGTRPV  224 (402)
T ss_dssp             ---EEECTTTCCSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEE-------------------CSSCSSSCC
T ss_pred             ---EEEecCCCCCceEEEEECCC-CCEEEEEecCCcEEEEeCCCCceeeeec-------------------cCCCCCcce
Confidence               111  356788999999996 6899999999999999999876544331                   123332488


Q ss_pred             EEEEcCCCCEEEEE---eCCCeEEEEEcCCC
Q 004685          284 HVTFSPNGEEVLLS---YSGEHVYLMDVNHA  311 (737)
Q Consensus       284 ~v~~sp~g~~l~~g---~~dg~v~iwd~~~~  311 (737)
                      +++|+|++.+|++|   +.|+.|++||+.+.
T Consensus       225 ~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          225 HAVFVSEGKILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             EEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred             EEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence            99999999999999   78999999998874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=1.1e-29  Score=272.23  Aligned_cols=179  Identities=16%  Similarity=0.159  Sum_probs=140.7

Q ss_pred             EEECCCCeEEEEEcccCccceEEEEEeeCCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEE
Q 004685           76 VWSYSSRKLLHSIETGHSANVFCTKFVPETSD-ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA  154 (737)
Q Consensus        76 vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  154 (737)
                      +|++...+....+ .+|...|.+++|+|+  + .+|++|+.||.|++||+......        ......+|...|.+++
T Consensus        57 ~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~h~~~v~~~~  125 (383)
T 3ei3_B           57 IRSLKSYKLHRTA-SPFDRRVTSLEWHPT--HPTTVAVGSKGGDIILWDYDVQNKT--------SFIQGMGPGDAITGMK  125 (383)
T ss_dssp             HHHHTTCEEEEEE-CCCSSCEEEEEECSS--CTTEEEEEEBTSCEEEEETTSTTCE--------EEECCCSTTCBEEEEE
T ss_pred             cccccccceEEec-cCCCCCEEEEEECCC--CCCEEEEEcCCCeEEEEeCCCcccc--------eeeecCCcCCceeEEE
Confidence            3444556666777 789999999999999  5 89999999999999999864321        1222346999999999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEE
Q 004685          155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG  234 (737)
Q Consensus       155 ~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~  234 (737)
                      |+|.++.+|++++.|+.|++||++...                       ...+.....+...+.+++|+|+ +.+|+++
T Consensus       126 ~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~  181 (383)
T 3ei3_B          126 FNQFNTNQLFVSSIRGATTLRDFSGSV-----------------------IQVFAKTDSWDYWYCCVDVSVS-RQMLATG  181 (383)
T ss_dssp             EETTEEEEEEEEETTTEEEEEETTSCE-----------------------EEEEECCCCSSCCEEEEEEETT-TTEEEEE
T ss_pred             eCCCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEeccCCCCCCeEEEEECCC-CCEEEEE
Confidence            999667899999999999999998532                       1122233345678999999997 5899999


Q ss_pred             eCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 004685          235 GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       235 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~  311 (737)
                      +.|+.|++||++ ++.+..+                    .+|.. .|.+++|+|+++ +|++++.|+.|++||+.+.
T Consensus       182 ~~d~~i~i~d~~-~~~~~~~--------------------~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  237 (383)
T 3ei3_B          182 DSTGRLLLLGLD-GHEIFKE--------------------KLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDLRNI  237 (383)
T ss_dssp             ETTSEEEEEETT-SCEEEEE--------------------ECSSS-CEEEEEECSSCTTEEEEEETTSEEEEEEGGGC
T ss_pred             CCCCCEEEEECC-CCEEEEe--------------------ccCCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCC
Confidence            999999999995 3322222                    12333 699999999999 8999999999999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=6.5e-29  Score=261.10  Aligned_cols=178  Identities=20%  Similarity=0.264  Sum_probs=136.2

Q ss_pred             CCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC
Q 004685           80 SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN  159 (737)
Q Consensus        80 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  159 (737)
                      ++.++..++ .+|.+.|++|+|+|+. +++|+||+.|++|+|||+.......     ..+...+.+|...|.+++|+| +
T Consensus        26 ~~~~l~~tL-~GH~~~V~~v~~sp~~-~~~l~S~s~D~~i~vWd~~~~~~~~-----~~~~~~l~~h~~~V~~~~~s~-d   97 (340)
T 4aow_A           26 EQMTLRGTL-KGHNGWVTQIATTPQF-PDMILSASRDKTIIMWKLTRDETNY-----GIPQRALRGHSHFVSDVVISS-D   97 (340)
T ss_dssp             CEEEEEEEE-CCCSSCEEEEEECTTC-TTEEEEEETTSCEEEEEECCSSSCS-----EEEEEEECCCSSCEEEEEECT-T
T ss_pred             CceEEEEEE-CCccCCEEEEEEeCCC-CCEEEEEcCCCeEEEEECCCCCccc-----ceeeEEEeCCCCCEEEEEECC-C
Confidence            334455667 8999999999999985 6899999999999999998643221     124567889999999999999 6


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc
Q 004685          160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF  239 (737)
Q Consensus       160 ~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~  239 (737)
                      +.+|++++.|+.|++|+.......                         .....+...+..+.+++. +..|++++.|+.
T Consensus        98 g~~l~s~~~d~~i~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~  151 (340)
T 4aow_A           98 GQFALSGSWDGTLRLWDLTTGTTT-------------------------RRFVGHTKDVLSVAFSSD-NRQIVSGSRDKT  151 (340)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEE-------------------------EEEECCSSCEEEEEECTT-SSCEEEEETTSC
T ss_pred             CCEEEEEcccccceEEeeccccee-------------------------eeecCCCCceeEEEEeec-CccceeecCCCe
Confidence            689999999999999998876421                         111123456777888887 579999999999


Q ss_pred             EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC--CEEEEEeCCCeEEEEEcCCC
Q 004685          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g--~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +++||+.........                   ..+|.. .+..++|++++  .++++++.|+.|++||+.++
T Consensus       152 ~~~~d~~~~~~~~~~-------------------~~~~~~-~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~  205 (340)
T 4aow_A          152 IKLWNTLGVCKYTVQ-------------------DESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC  205 (340)
T ss_dssp             EEEECTTSCEEEEEC-------------------SSSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEeCCCceEEEE-------------------eccccC-cccceEEccCCCCcEEEEEcCCCEEEEEECCCC
Confidence            999998754322111                   122333 58999999864  57889999999999998763

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=2.4e-29  Score=274.54  Aligned_cols=167  Identities=16%  Similarity=0.190  Sum_probs=132.1

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      ..|...|+||+|+|.. +.+|++|+.||.|+|||+......        ....+.+|...|++|+|+|.++.+|++|+.|
T Consensus       116 ~~~~~~V~~l~~~P~~-~~~lasGs~dg~i~lWd~~~~~~~--------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D  186 (435)
T 4e54_B          116 APFDRRATSLAWHPTH-PSTVAVGSKGGDIMLWNFGIKDKP--------TFIKGIGAGGSITGLKFNPLNTNQFYASSME  186 (435)
T ss_dssp             EECSSCEEEEEECSSC-TTCEEEEETTSCEEEECSSCCSCC--------EEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred             CCCCCCEEEEEEeCCC-CCEEEEEeCCCEEEEEECCCCCce--------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence            5688999999999964 689999999999999999864432        2445678999999999999778899999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      |+|++||++....                       ..+.....+...+.+++|+|+ +.+|++|+.||.|++||++...
T Consensus       187 ~~v~iwd~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~~~  242 (435)
T 4e54_B          187 GTTRLQDFKGNIL-----------------------RVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDGKE  242 (435)
T ss_dssp             SCEEEEETTSCEE-----------------------EEEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESSSCB
T ss_pred             CEEEEeeccCCce-----------------------eEEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccCcce
Confidence            9999999976431                       112222334456788999997 6899999999999999987432


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~  311 (737)
                       +..+                    .+|.. .|++++|+|++. +|++|+.|+.|++||+.+.
T Consensus       243 -~~~~--------------------~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~  283 (435)
T 4e54_B          243 -LWNL--------------------RMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDLRQV  283 (435)
T ss_dssp             -CCCS--------------------BCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEETTTC
T ss_pred             -eEEE--------------------ecccc-eEEeeeecCCCceEEEEecCcceeeEEecccc
Confidence             2111                    22433 699999999886 6778899999999999874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=3.4e-29  Score=290.29  Aligned_cols=234  Identities=20%  Similarity=0.227  Sum_probs=189.2

Q ss_pred             cCCCCCcccccccccccccc---cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccce
Q 004685           20 TDTRPDVNHSLQMHSSLVRR---LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV   96 (737)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V   96 (737)
                      +..+.+.+++|++|+.....   ......+.+|...|++++|+|++++|++|+.|+.|+|||+.+++.+..+ .+|...|
T Consensus       397 ~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v  475 (694)
T 3dm0_A          397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDV  475 (694)
T ss_dssp             EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCE
T ss_pred             EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCE
Confidence            34567788999999854322   2345678999999999999999999999999999999999999999888 7999999


Q ss_pred             EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEE
Q 004685           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQH  175 (737)
Q Consensus        97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vw  175 (737)
                      .+++|+|+  +.+|++|+.|++|++||+......       .......+|...|.+++|+|+. ..+|++++.|++|++|
T Consensus       476 ~~~~~s~~--~~~l~s~s~D~~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vw  546 (694)
T 3dm0_A          476 LSVAFSLD--NRQIVSASRDRTIKLWNTLGECKY-------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW  546 (694)
T ss_dssp             EEEEECTT--SSCEEEEETTSCEEEECTTSCEEE-------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEE
T ss_pred             EEEEEeCC--CCEEEEEeCCCEEEEEECCCCcce-------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEE
Confidence            99999999  799999999999999998642110       0112235789999999999954 2589999999999999


Q ss_pred             EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (737)
Q Consensus       176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~  255 (737)
                      |++..+.                         ......|...|.+++|+|+ +++|++|+.|+.|++||+++++.+..+.
T Consensus       547 d~~~~~~-------------------------~~~~~~h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~~~~~~~  600 (694)
T 3dm0_A          547 NLSNCKL-------------------------RSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLYSLE  600 (694)
T ss_dssp             ETTTCCE-------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred             ECCCCcE-------------------------EEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEEEec
Confidence            9987652                         2223467789999999997 6899999999999999999876543321


Q ss_pred             CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                                          .+  ..|.+++|+|++.+|++++ ++.|++||+.++.
T Consensus       601 --------------------~~--~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~  634 (694)
T 3dm0_A          601 --------------------AN--SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKS  634 (694)
T ss_dssp             --------------------CS--SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred             --------------------CC--CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence                                11  2599999999998777665 5679999999854

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=4.1e-29  Score=262.94  Aligned_cols=159  Identities=9%  Similarity=0.071  Sum_probs=129.9

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCc-EEEEEeC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH-VVWSASE  168 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-~l~s~s~  168 (737)
                      .+|...|.+++|+|+  +.+|++++.|+.|++|++......       .+...+..|...|.+++|+| ++. +|++++.
T Consensus         8 ~~h~~~v~~~~~s~~--~~~l~~~~~d~~v~iw~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~   77 (342)
T 1yfq_A            8 QAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKN-------VDLLQSLRYKHPLLCCNFID-NTDLQIYVGTV   77 (342)
T ss_dssp             SCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTE-------EEEEEEEECSSCEEEEEEEE-SSSEEEEEEET
T ss_pred             cCCCCcEEEEEEcCC--CCEEEEEcCCCeEEEEEeCCCCcc-------ccceeeeecCCceEEEEECC-CCCcEEEEEcC
Confidence            689999999999999  799999999999999999864311       12445568999999999999 568 8999999


Q ss_pred             CCcEEEEEc-CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC--CccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685          169 DGTLRQHDF-RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK--QTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       169 Dg~I~vwdl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~  245 (737)
                      ||.|++||+ ..+..                          .....  |...|.+++|+|  +.+|++++.|+.|++||+
T Consensus        78 dg~i~~wd~~~~~~~--------------------------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~  129 (342)
T 1yfq_A           78 QGEILKVDLIGSPSF--------------------------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDP  129 (342)
T ss_dssp             TSCEEEECSSSSSSE--------------------------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECH
T ss_pred             CCeEEEEEeccCCce--------------------------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcc
Confidence            999999999 76541                          11223  678899999999  479999999999999999


Q ss_pred             CC---------CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          246 RM---------LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       246 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      ++         .+.+..+.                     +. ..|.+++|+|++  +++++.|+.|++||+.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~---------------------~~-~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          130 RNYGDGVIAVKNLNSNNTK---------------------VK-NKIFTMDTNSSR--LIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             HHHTTBCEEEEESCSSSSS---------------------SC-CCEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred             cccccccccccCCeeeEEe---------------------eC-CceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence            86         44333221                     22 259999999988  99999999999999887

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.8e-28  Score=255.04  Aligned_cols=227  Identities=15%  Similarity=0.214  Sum_probs=180.2

Q ss_pred             Cccccccccccccccccccee--ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe
Q 004685           25 DVNHSLQMHSSLVRRLSQERE--LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (737)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~--l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s  102 (737)
                      +.+++|++|+..  +.+.+..  +.+|...|++++|+|++++||+|+.||+|++||+.+++.+..+ .+|...+.++.+.
T Consensus        42 g~D~tV~iWd~~--tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~~  118 (318)
T 4ggc_A           42 ALDNSVYLWSAS--SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN  118 (318)
T ss_dssp             EETTEEEEEETT--TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEE
T ss_pred             EeCCEEEEEECC--CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-cCccceEEEeecC
Confidence            468999999944  4455544  4578889999999999999999999999999999999999998 7899888876654


Q ss_pred             eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                          +.++++++.++.+++|+.....         ..+..+.+|...+..+.+.+ .+.+|++++.|+.|++||+++++.
T Consensus       119 ----~~~l~s~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~  184 (318)
T 4ggc_A          119 ----SYILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEG  184 (318)
T ss_dssp             ----TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTT
T ss_pred             ----CCEEEEEecCCceEeeecCCCc---------eeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcc
Confidence                4689999999999999987532         23567789999999999999 668999999999999999988753


Q ss_pred             CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEE--EEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004685          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL--LVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (737)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l--~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (737)
                      ..                     ........+...+.++.++|.++..+  ++++.++.|++||.+.........     
T Consensus       185 ~~---------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-----  238 (318)
T 4ggc_A          185 GW---------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-----  238 (318)
T ss_dssp             BS---------------------CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-----
T ss_pred             cc---------------------cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-----
Confidence            21                     01122234567889999999876665  456678999999998765332211     


Q ss_pred             CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe--CCCeEEEEEcCCC
Q 004685          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA  311 (737)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~--~dg~v~iwd~~~~  311 (737)
                                      + ...+..+.|+|++..+++++  .|+.|++||+.++
T Consensus       239 ----------------~-~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~  274 (318)
T 4ggc_A          239 ----------------A-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  274 (318)
T ss_dssp             ----------------C-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             ----------------c-eeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence                            1 12489999999999988876  5899999998774

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=4.7e-29  Score=268.41  Aligned_cols=183  Identities=13%  Similarity=0.108  Sum_probs=131.1

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC---CC---cEE
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NP---HVV  163 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~---~~l  163 (737)
                      .+|...|++++|+|    .+|++|+.||.|++|++.......    .......+.+|...|++++|+|+   ++   .+|
T Consensus        13 ~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A           13 KAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNEN----PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             SCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCC----GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCccccc----CCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            78999999999987    499999999999999998643111    12246777899999999999993   27   899


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCC-----ccceEEEEEe----cCCCcE-EEE
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-----TLSLKSCDIS----STRPHL-LLV  233 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~i~~s----p~~~~~-l~t  233 (737)
                      ++++.|+.|++||+.++....         . .          .+.....+     ...|.+++|+    |+ +.. |++
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~---------~-~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~l~~  143 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETK---------K-V----------IFEKLDLLDSDMKKHSFWALKWGASNDRL-LSHRLVA  143 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTC---------C-E----------EEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEE
T ss_pred             EEEcCCCCEEEEEccCCcccc---------c-c----------cceeecccccccCCCcEEEEEEeeccCCC-CceEEEE
Confidence            999999999999998876310         0 0          01111233     4789999999    87 578 999


Q ss_pred             EeCCCcEEEEECCC------CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004685          234 GGSDAFARLYDRRM------LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD  307 (737)
Q Consensus       234 ~s~Dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd  307 (737)
                      ++.|+.|++||++.      .+.+....        ...+........ .+...|.+++|+|++ +|++++.||.|++||
T Consensus       144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          144 TDVKGTTYIWKFHPFADESNSLTLNWSP--------TLELQGTVESPM-TPSQFATSVDISERG-LIATGFNNGTVQISE  213 (397)
T ss_dssp             EETTSCEEEEEEESSSSHHHHTTTCCCC--------EEEEEEEECCSS-SSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred             EeCCCcEEEEeCCccccccccceeeccC--------cceeeeeecccc-CCCCCceEEEECCCc-eEEEEeCCCcEEEEE
Confidence            99999999999987      44332000        000000000001 122369999999999 999999999999999


Q ss_pred             cCCC
Q 004685          308 VNHA  311 (737)
Q Consensus       308 ~~~~  311 (737)
                      +.++
T Consensus       214 ~~~~  217 (397)
T 1sq9_A          214 LSTL  217 (397)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            8763

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-29  Score=270.30  Aligned_cols=199  Identities=16%  Similarity=0.171  Sum_probs=141.9

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                      .-...|.+++|+|||+++||++.|++|+  |...++   .+ .+|...|.+++|+|+  |       .++.+.+|+... 
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l-~gh~~~v~~V~FsPd--g-------~~~~~~~~~~~~-   76 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DI-NCNSKNLFHVKEFPL--E-------FENKLDFELAQQ-   76 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CC-SSBGGGTEEEEEECC--C-------CCCTTTTSCCCS-
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---ee-cCCCccEEEEEECCC--C-------CcceEEEEeCCC-
Confidence            3457899999999999999999999999  755443   44 689999999999999  5       466666655432 


Q ss_pred             CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                        ..        ...+ .|...|.+++|+| ++.+|++++.||.|++||... .               +..+. .    
T Consensus        77 --~~--------~~~~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~-~---------------l~~l~-~----  123 (588)
T 2j04_A           77 --NG--------LLNS-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK-M---------------LTNLD-S----  123 (588)
T ss_dssp             --SC--------SSTT-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE-E---------------EEECC-C----
T ss_pred             --ce--------Eeec-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc-e---------------eeecc-C----
Confidence              11        2222 4588999999999 668999999999999999432 0               00000 0    


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                        ..+.....+.+++|+|+ +++||+|+.||.|++||+..+......      -..+..+   .....+|. .+|.+++|
T Consensus       124 --~~~~~~~sv~svafSPD-G~~LAsgs~DGtVkIWd~~~~~l~~~~------~i~l~ti---~~~~~gh~-~~V~sVaw  190 (588)
T 2j04_A          124 --KGNLSSRTYHCFEWNPI-ESSIVVGNEDGELQFFSIRKNSENTPE------FYFESSI---RLSDAGSK-DWVTHIVW  190 (588)
T ss_dssp             --SSCSTTTCEEEEEECSS-SSCEEEEETTSEEEEEECCCCTTTCCC------CEEEEEE---ECSCTTCC-CCEEEEEE
T ss_pred             --CCccccccEEEEEEcCC-CCEEEEEcCCCEEEEEECCCCcccccc------ceeeeee---eccccccc-ccEEEEEE
Confidence              00001235899999997 699999999999999999876420000      0000000   00112233 37999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCC
Q 004685          288 SPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       288 sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +|+|  +++++.|+.|++||+..
T Consensus       191 SPdg--Laass~D~tVrlWd~~~  211 (588)
T 2j04_A          191 YEDV--LVAALSNNSVFSMTVSA  211 (588)
T ss_dssp             ETTE--EEEEETTCCEEEECCCS
T ss_pred             cCCc--EEEEeCCCeEEEEECCC
Confidence            9999  88999999999999876

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=4.4e-28  Score=261.37  Aligned_cols=252  Identities=15%  Similarity=0.182  Sum_probs=182.3

Q ss_pred             CCCCcccccccccccccccccceee-----------cccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEc
Q 004685           22 TRPDVNHSLQMHSSLVRRLSQEREL-----------EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE   89 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~   89 (737)
                      ...+.++.|++|+............           .+|...|++++|+| ++.+|++|+.||.|++||+.+++.+..+ 
T Consensus        60 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-  138 (408)
T 4a11_B           60 LSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-  138 (408)
T ss_dssp             EEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred             EEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec-
Confidence            3455688999999543333222221           36999999999999 7889999999999999999999988877 


Q ss_pred             ccCccceEEEEEeeCC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC
Q 004685           90 TGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE  168 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  168 (737)
                       .+...+.++.|+|.. ++.++++++.|+.|++||+....          .+..+..|...|.+++|+|++..+|++++.
T Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~  207 (408)
T 4a11_B          139 -NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS----------CSHILQGHRQEILAVSWSPRYDYILATASA  207 (408)
T ss_dssp             -ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC----------CCEEECCCCSCEEEEEECSSCTTEEEEEET
T ss_pred             -cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc----------eeeeecCCCCcEEEEEECCCCCcEEEEEcC
Confidence             378899999999963 14599999999999999998632          367788899999999999966557999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004685          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (737)
Q Consensus       169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~  248 (737)
                      ||.|++||++...........+...         ...........|...|.+++|+|+ +++|++++.|+.|++||++++
T Consensus       208 dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          208 DSRVKLWDVRRASGCLITLDQHNGK---------KSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             TSCEEEEETTCSSCCSEECCTTTTC---------SCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTC
T ss_pred             CCcEEEEECCCCCcccccccccccc---------cceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEECCCC
Confidence            9999999998876321111000000         001112233567889999999997 689999999999999999987


Q ss_pred             CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +...........              ....  .+........+..+++++.++.|++||+.++
T Consensus       278 ~~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~  324 (408)
T 4a11_B          278 ENTLVNYGKVCN--------------NSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG  324 (408)
T ss_dssp             CBCCCCCCCCCC--------------CCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTC
T ss_pred             ccceeccccccc--------------cccc--cceeEEecCCCceEEEEecCCEEEEEECcCC
Confidence            654333211100              0001  1222233345566778888999999998774

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3e-29  Score=292.63  Aligned_cols=130  Identities=18%  Similarity=0.263  Sum_probs=108.4

Q ss_pred             ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      ...+.+|.++|++++|+|++++|++|+.||.|+|||+.  +++.+..+ .+|..+|.+++|+|+.++.+|++|+.||.|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            35688999999999999999999999999999999998  55667777 7999999999999874468999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC-CcEEEEEeCCCcEEEEEcCCCC
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGS  181 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~Dg~I~vwdl~~~~  181 (737)
                      +||+.....        .....+..|...|++++|+|+. +.++++|+.||.|++||++...
T Consensus        81 vwd~~~~~~--------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~  134 (753)
T 3jro_A           81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  134 (753)
T ss_dssp             EEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred             EEECCCCcc--------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence            999986321        2356778899999999999942 6899999999999999998764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3e-28  Score=252.69  Aligned_cols=162  Identities=12%  Similarity=0.115  Sum_probs=129.5

Q ss_pred             eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcE
Q 004685           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (737)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  162 (737)
                      +....+ .+|...|.+++| |+  +.+|++|+.||.|++||+...          .....+..|...|.+++|+| ++.+
T Consensus         9 ~~~~~l-~~h~~~v~~~~~-~~--~~~l~s~~~dg~v~vw~~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~   73 (313)
T 3odt_A            9 QLSATL-KGHDQDVRDVVA-VD--DSKVASVSRDGTVRLWSKDDQ----------WLGTVVYTGQGFLNSVCYDS-EKEL   73 (313)
T ss_dssp             EEEEEE-CCCSSCEEEEEE-EE--TTEEEEEETTSEEEEEEESSS----------EEEEEEEECSSCEEEEEEET-TTTE
T ss_pred             HHHHHh-hCCCCCcEEEEe-cC--CCEEEEEEcCCcEEEEECCCC----------EEEEEeecCCccEEEEEECC-CCCE
Confidence            566677 899999999999 87  689999999999999999752          22566778999999999999 6689


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (737)
Q Consensus       163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i  242 (737)
                      |++++.|+.|++|++......                      ..+.....|...+.+++|+   ++++++++.|+.|++
T Consensus        74 l~~~~~dg~i~~~~~~~~~~~----------------------~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~  128 (313)
T 3odt_A           74 LLFGGKDTMINGVPLFATSGE----------------------DPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKV  128 (313)
T ss_dssp             EEEEETTSCEEEEETTCCTTS----------------------CC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEE
T ss_pred             EEEecCCCeEEEEEeeecCCC----------------------CcccchhhcccCEEEEEec---CCEEEEEeCCCCEEE
Confidence            999999999999999875421                      1122334577889999994   469999999999999


Q ss_pred             EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCCCeEEEEE
Q 004685          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMD  307 (737)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~dg~v~iwd  307 (737)
                      ||  ..+.+..+                    ..|.. .+.+++|+| ++.++++++.||.|++||
T Consensus       129 ~d--~~~~~~~~--------------------~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d  171 (313)
T 3odt_A          129 WK--EGSLVYNL--------------------QAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQ  171 (313)
T ss_dssp             EE--TTEEEEEE--------------------ECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             Ec--CCcEEEec--------------------ccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence            99  22222221                    11222 599999998 999999999999999999

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.6e-28  Score=256.61  Aligned_cols=177  Identities=15%  Similarity=0.174  Sum_probs=137.5

Q ss_pred             EEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEE
Q 004685           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (737)
Q Consensus        85 ~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~  164 (737)
                      ...+ .+|...|++++|+|+  +.+|++|+.||.|++||+...          +.+..+.+|...|.+++|+| ++.+|+
T Consensus        25 ~~~l-~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~   90 (369)
T 3zwl_B           25 AIKL-TGHERPLTQVKYNKE--GDLLFSCSKDSSASVWYSLNG----------ERLGTLDGHTGTIWSIDVDC-FTKYCV   90 (369)
T ss_dssp             EEEE-ECCSSCEEEEEECTT--SCEEEEEESSSCEEEEETTTC----------CEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             cEEE-EEeeceEEEEEEcCC--CCEEEEEeCCCEEEEEeCCCc----------hhhhhhhhcCCcEEEEEEcC-CCCEEE
Confidence            3445 789999999999999  799999999999999999863          23677889999999999999 668999


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC-----Cc
Q 004685          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AF  239 (737)
Q Consensus       165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-----g~  239 (737)
                      +++.||.|++||+.+++..           .           .+    .+...+.+++|+|+ +.++++++.+     +.
T Consensus        91 s~~~dg~i~iwd~~~~~~~-----------~-----------~~----~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~  143 (369)
T 3zwl_B           91 TGSADYSIKLWDVSNGQCV-----------A-----------TW----KSPVPVKRVEFSPC-GNYFLAILDNVMKNPGS  143 (369)
T ss_dssp             EEETTTEEEEEETTTCCEE-----------E-----------EE----ECSSCEEEEEECTT-SSEEEEEECCBTTBCCE
T ss_pred             EEeCCCeEEEEECCCCcEE-----------E-----------Ee----ecCCCeEEEEEccC-CCEEEEecCCccCCCCE
Confidence            9999999999999887532           0           01    14567999999997 5899999998     99


Q ss_pred             EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      |++||++.......+......  ..     ..+..+.. ...+.+++|+|++++|++++.||.|++||+.+
T Consensus       144 i~~~d~~~~~~~~~~~~~~~~--~~-----~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  206 (369)
T 3zwl_B          144 INIYEIERDSATHELTKVSEE--PI-----HKIITHEG-LDAATVAGWSTKGKYIIAGHKDGKISKYDVSN  206 (369)
T ss_dssp             EEEEEEEECTTTCCEEEECSS--CS-----EEEECCTT-CCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             EEEEEecCCccceeecccccc--ee-----eeccCCcC-ccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            999999877644333211100  00     00111111 11599999999999999999999999999876

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=2e-28  Score=252.74  Aligned_cols=244  Identities=14%  Similarity=0.163  Sum_probs=192.2

Q ss_pred             CCCCCcccccccccccccccccceeecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccce
Q 004685           21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANV   96 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V   96 (737)
                      ..+.+.++++++|+......+.+.+|.+|.++|++++|+|+  +++||+|+.|++|+|||+.+++  .+..+ ..|...|
T Consensus        24 las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v  102 (297)
T 2pm7_B           24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASV  102 (297)
T ss_dssp             EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCE
T ss_pred             EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCce
Confidence            34567889999999655556788999999999999999874  8999999999999999998874  45556 6899999


Q ss_pred             EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC------------CcEEE
Q 004685           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN------------PHVVW  164 (737)
Q Consensus        97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~------------~~~l~  164 (737)
                      .+++|+|+..+.+|++|+.|+.|++||++.....        ....+.+|...|.+++|+|..            +.+|+
T Consensus       103 ~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~--------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~  174 (297)
T 2pm7_B          103 NSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT--------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV  174 (297)
T ss_dssp             EEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB--------CCEEEECCSSCEEEEEECCCC------------CCEEE
T ss_pred             eEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce--------eeeeeecccCccceEeecCCcccccccCCCCCCcceEE
Confidence            9999999733589999999999999999863211        135677899999999999952            46899


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC--CcEEEEEeCCCcEEE
Q 004685          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARL  242 (737)
Q Consensus       165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~t~s~Dg~i~i  242 (737)
                      +|+.|++|++||++.+...                     .........|...|.+++|+|+.  +.+|++++.|+.|++
T Consensus       175 sgs~D~~v~lwd~~~~~~~---------------------~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i  233 (297)
T 2pm7_B          175 TGGADNLVKIWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII  233 (297)
T ss_dssp             EEETTSCEEEEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             EEcCCCcEEEEEEcCCCce---------------------EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence            9999999999999875421                     01122345688899999999974  479999999999999


Q ss_pred             EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      ||++........               ..+...++. ..|.+++|+|+|++|++++.|+.|++|+...
T Consensus       234 Wd~~~~~~~~~~---------------~~~~~~~~~-~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          234 WTQDNEQGPWKK---------------TLLKEEKFP-DVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEESSTTSCCEE---------------EESSSSCCS-SCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EEeCCCCCccce---------------eeeecccCC-CcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            999764210000               000001222 2699999999999999999999999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=1.4e-28  Score=261.98  Aligned_cols=170  Identities=7%  Similarity=0.035  Sum_probs=135.6

Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      ..|..+|.+++|+|+  +.+|++++.|+.|++||+....        ...+..+.+|...|.+++|+| ++.+|++++.|
T Consensus         5 ~~~~~~i~~~~~s~~--~~~l~~~~~d~~v~i~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d   73 (372)
T 1k8k_C            5 SFLVEPISCHAWNKD--RTQIAICPNNHEVHIYEKSGNK--------WVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTD   73 (372)
T ss_dssp             ESCSSCCCEEEECTT--SSEEEEECSSSEEEEEEEETTE--------EEEEEEEECCSSCEEEEEEET-TTTEEEEEETT
T ss_pred             cccCCCeEEEEECCC--CCEEEEEeCCCEEEEEeCCCCc--------EEeeeeecCCCCcccEEEEeC-CCCEEEEEcCC
Confidence            458999999999999  7999999999999999998632        113677889999999999999 66899999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      +.|++||+.+++..                       .......|...+.+++|+|+ +++|++++.|+.|++||++...
T Consensus        74 g~i~vwd~~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~  129 (372)
T 1k8k_C           74 RNAYVWTLKGRTWK-----------------------PTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQEN  129 (372)
T ss_dssp             SCEEEEEEETTEEE-----------------------EEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTT
T ss_pred             CeEEEEECCCCeee-----------------------eeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEecCCC
Confidence            99999999776411                       11222346778999999997 5899999999999999998765


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ......          .      ...+|. ..|.+++|+|++.+|++++.||.|++||+...
T Consensus       130 ~~~~~~----------~------~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  174 (372)
T 1k8k_C          130 DWWVCK----------H------IKKPIR-STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  174 (372)
T ss_dssp             TEEEEE----------E------ECTTCC-SCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             cceeee----------e------eecccC-CCeeEEEEcCCCCEEEEEcCCCCEEEEEcccc
Confidence            311110          0      001122 26999999999999999999999999998763

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=5.6e-29  Score=267.64  Aligned_cols=114  Identities=14%  Similarity=0.165  Sum_probs=94.7

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeEEEE----EcccCccceEEEEEee--------CCCCCEEEEEECCCcEEEEec
Q 004685           57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHS----IETGHSANVFCTKFVP--------ETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        57 ~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~----~~~~h~~~V~~v~~sp--------~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      .+++++.+||+|+.|++|+|||..+++....    ...+|...|++++|+|        +  +.+|++|+.|++|+|||+
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d--~~~las~s~D~tv~~Wd~  173 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLA--EQVIASVGDDCTLIIWRL  173 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE--EEEEEEEETTSEEEEEEE
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCC--CCEEEEEECCCeEEEEEC
Confidence            3344566899999999999999998865432    1268999999999998        5  689999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                      ....          +...+..|...|.+++|+|+++.+|++++.|++|++||+++++.
T Consensus       174 ~~~~----------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~  221 (393)
T 4gq1_A          174 TDEG----------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS  221 (393)
T ss_dssp             ETTE----------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred             CCCc----------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence            7532          25667789999999999997767899999999999999998763

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=260.88  Aligned_cols=229  Identities=14%  Similarity=0.158  Sum_probs=178.6

Q ss_pred             ccccccccccccccccceeecccCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCe-EEEEEcccCccceEEEEE-
Q 004685           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKF-  101 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~---g~~lasgs~dg~V~vwd~~~~~-~~~~~~~~h~~~V~~v~~-  101 (737)
                      ++.+++|+....+...... .+|..+|++++|+|+   +.+|++|+.||.|++||+.+++ .+..+ .+|...|.+++| 
T Consensus        43 d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~  120 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGI  120 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEE
T ss_pred             CcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeec
Confidence            8899999954433332222 379999999999998   6999999999999999999887 77777 799999999966 


Q ss_pred             -----eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC----ceeEEE----EecCCCcEEEEEeC
Q 004685          102 -----VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR----RVKKLA----VEVGNPHVVWSASE  168 (737)
Q Consensus       102 -----sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~----~~p~~~~~l~s~s~  168 (737)
                           +|+  +.+|++++.||.|++||+.....         +...+..|..    .+.++.    |+| ++.+|++++.
T Consensus       121 ~~~~~s~~--~~~l~~~~~d~~i~vwd~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~  188 (357)
T 3i2n_A          121 GGLGIGEG--APEIVTGSRDGTVKVWDPRQKDD---------PVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYD  188 (357)
T ss_dssp             SGGGCC-C--CCEEEEEETTSCEEEECTTSCSS---------CSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEET
T ss_pred             cccccCCC--ccEEEEEeCCCeEEEEeCCCCCC---------cceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEcc
Confidence                 566  78999999999999999986431         2455544443    789998    566 6689999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec---CCCcEEEEEeCCCcEEEEEC
Q 004685          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS---TRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp---~~~~~l~t~s~Dg~i~iwd~  245 (737)
                      |+.|++||+++++..                          ....+...+.+++|+|   + +.+|++++.|+.|++||+
T Consensus       189 d~~i~i~d~~~~~~~--------------------------~~~~~~~~v~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~  241 (357)
T 3i2n_A          189 NGDIKLFDLRNMALR--------------------------WETNIKNGVCSLEFDRKDIS-MNKLVATSLEGKFHVFDM  241 (357)
T ss_dssp             TSEEEEEETTTTEEE--------------------------EEEECSSCEEEEEESCSSSS-CCEEEEEESTTEEEEEEE
T ss_pred             CCeEEEEECccCcee--------------------------eecCCCCceEEEEcCCCCCC-CCEEEEECCCCeEEEEeC
Confidence            999999999886521                          0113456899999999   5 589999999999999999


Q ss_pred             CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC
Q 004685          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~~~  312 (737)
                      ++.+....+..             ...  .+|.. .|++++|+|+++ +|++++.||.|++||+.++.
T Consensus       242 ~~~~~~~~~~~-------------~~~--~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          242 RTQHPTKGFAS-------------VSE--KAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EEEETTTEEEE-------------EEE--ECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             cCCCcccceee-------------ecc--CCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            87664433210             000  12333 699999999998 89999999999999998753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=5e-28  Score=256.42  Aligned_cols=216  Identities=9%  Similarity=0.052  Sum_probs=139.1

Q ss_pred             ccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECCC
Q 004685           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDA  117 (737)
Q Consensus        39 ~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~dg  117 (737)
                      ..+++.++.+|...|++++|+|||++|++|+.++ ++|||+.+++.....   +...+..+++.++  ++.+ ++++.|+
T Consensus         8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~d~   81 (355)
T 3vu4_A            8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---EMRHLSKVRMLHR--TNYVAFVTGVKE   81 (355)
T ss_dssp             -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---ECSCCCEEEECTT--SSEEEEECSSTT
T ss_pred             ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---ecCCeEEEEEcCC--CCEEEEEECCcc
Confidence            3445667789999999999999999999998775 789999988766554   2235888889888  4555 6778889


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC-CCCCCCCCCCCccceE
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRNI  196 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~-~~~~~~~~~~~~~~~~  196 (737)
                      +|++||+..+.          ++..+. +...|.++.|++ +  .++++ .|+.|++||+.+. +.+..           
T Consensus        82 ~v~iWd~~~~~----------~~~~~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~-----------  135 (355)
T 3vu4_A           82 VVHIWDDVKKQ----------DVSRIK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITD-----------  135 (355)
T ss_dssp             EEEEEETTTTE----------EEEEEE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSC-----------
T ss_pred             EEEEEECCCCc----------EEEEEE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEE-----------
Confidence            99999998632          244454 677999999987 3  34444 4789999999987 32210           


Q ss_pred             EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEE--EeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccC
Q 004685          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV--GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (737)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t--~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (737)
                                    ...   ....+++++   ..+++  |+.||.|++||++++...........    .....+.....
T Consensus       136 --------------~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~----~~~~~p~~~~~  191 (355)
T 3vu4_A          136 --------------DIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ----QKAILGKGVLI  191 (355)
T ss_dssp             --------------CEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC----------------------CCEEE
T ss_pred             --------------ecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCcccccccccc----ccccCcccEEE
Confidence                          000   233456666   35555  68999999999987642211100000    00000000001


Q ss_pred             CCCcccceeEEEEcCCCCEEEEEeCCCe-EEEEEcCCC
Q 004685          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEH-VYLMDVNHA  311 (737)
Q Consensus       275 ~~~~~~~i~~v~~sp~g~~l~~g~~dg~-v~iwd~~~~  311 (737)
                      .+|.. .|++++|+|+|++|++|+.|++ |++||+.++
T Consensus       192 ~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~  228 (355)
T 3vu4_A          192 KAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG  228 (355)
T ss_dssp             CCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred             EccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            33444 6999999999999999999998 999999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.1e-28  Score=263.81  Aligned_cols=247  Identities=11%  Similarity=0.098  Sum_probs=181.9

Q ss_pred             CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEcccCccceEE
Q 004685           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFC   98 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---~~~~~~~~h~~~V~~   98 (737)
                      ...+.++.|++|+......+...++.+|.+.|++++|+|++++|++|+.|+.|++||+.+++   ....+ ..|...|.+
T Consensus        27 ~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~  105 (377)
T 3dwl_C           27 VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATF  105 (377)
T ss_dssp             ECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEE
T ss_pred             EEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEE
Confidence            44567899999996554447888999999999999999999999999999999999999877   55556 689999999


Q ss_pred             EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeecc-CCCceeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004685           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (737)
Q Consensus        99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl  177 (737)
                      ++|+|+  +.+|++|+.|+.|++||+.....       ......+.. |...|.+++|+| ++.+|++++.|+.|++||+
T Consensus       106 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~  175 (377)
T 3dwl_C          106 VRWSPN--EDKFAVGSGARVISVCYFEQEND-------WWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSA  175 (377)
T ss_dssp             EECCTT--SSCCEEEESSSCEEECCC------------CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEE
T ss_pred             EEECCC--CCEEEEEecCCeEEEEEECCccc-------ceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEE
Confidence            999998  79999999999999999986432       122556666 999999999999 6689999999999999999


Q ss_pred             CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC----ccc
Q 004685          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP----LTS  253 (737)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~----~~~  253 (737)
                      +..............       .+......+... .|...|.+++|+|+ +++|++++.|+.|++||+++++.    +..
T Consensus       176 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  246 (377)
T 3dwl_C          176 YVRDVDAKPEASVWG-------SRLPFNTVCAEY-PSGGWVHAVGFSPS-GNALAYAGHDSSVTIAYPSAPEQPPRALIT  246 (377)
T ss_dssp             CCSSCC-CCCSCSSC-------SCCCEEEEEECC-CCSSSEEEEEECTT-SSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred             EecccCCCccccccc-------cccchhhhhhcc-cCCceEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence            755422111000000       000001122333 67889999999997 58999999999999999998764    222


Q ss_pred             ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      +                    .+|.. .|.+++|+|++++|++|+.++.+ +|+...
T Consensus       247 ~--------------------~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          247 V--------------------KLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             E--------------------ECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             e--------------------cCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence            2                    12333 59999999999999888766655 776654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=9.9e-29  Score=262.28  Aligned_cols=259  Identities=12%  Similarity=0.116  Sum_probs=184.8

Q ss_pred             cccccccccccccccccceeecc-----cCCceEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccce
Q 004685           26 VNHSLQMHSSLVRRLSQERELEG-----HQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV   96 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~-----H~~~V~~l~~s~~----g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V   96 (737)
                      .++.|++|+..  +.+.+..+..     |...|++++|+|+    +.+|++|+.||.|++||+.+++.+..+ .+|...|
T Consensus        42 ~~~~v~vw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i  118 (366)
T 3k26_A           42 GSNRVTLYECH--SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAI  118 (366)
T ss_dssp             ETTEEEEEEEC--GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCE
T ss_pred             CCCEEEEEEcC--CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee-cCCCCcE
Confidence            35589999943  3444455543     5678999999998    679999999999999999999999988 7899999


Q ss_pred             EEEEEee-CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee---ccCCCceeEEEEecCCCcEEEEEeCCCcE
Q 004685           97 FCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---QCHTRRVKKLAVEVGNPHVVWSASEDGTL  172 (737)
Q Consensus        97 ~~v~~sp-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I  172 (737)
                      .+++|+| +  +.+|++|+.||.|++||+.....          ...+   ..|...|.+++|+| ++.+|++++.||.|
T Consensus       119 ~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  185 (366)
T 3k26_A          119 NELKFHPRD--PNLLLSVSKDHALRLWNIQTDTL----------VAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSL  185 (366)
T ss_dssp             EEEEECSSC--TTEEEEEETTSCEEEEETTTTEE----------EEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             EEEEECCCC--CCEEEEEeCCCeEEEEEeecCeE----------EEEecccccccCceeEEEECC-CCCEEEEecCCCCE
Confidence            9999999 6  79999999999999999986322          3444   68999999999999 66899999999999


Q ss_pred             EEEEcCCCCCCCCCCC---CCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          173 RQHDFRQGSSCPPAGS---SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       173 ~vwdl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      ++||+++++.......   .........................|...|.+++|+   ++++++++.|+.|++||+++..
T Consensus       186 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~  262 (366)
T 3k26_A          186 KLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKME  262 (366)
T ss_dssp             EEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTT
T ss_pred             EEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCcc
Confidence            9999987643200000   000000000000000001122233477899999999   3599999999999999998765


Q ss_pred             CcccccCCCCC-CCCccccccccccCCCCcccceeEEEEcCC--CCEEEEEeCCCeEEEEEcCCC
Q 004685          250 PLTSCQKRMSP-PPCVNYFCPMHLSEHGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       250 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~--g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ........... .....     .+  .+|.. .|++++|+|+  +++|++|+.||.|++||+.++
T Consensus       263 ~~~~~~~~~~~~~~~~~-----~~--~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          263 DDIDKIKPSESNVTILG-----RF--DYSQC-DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             CCGGGCCTTCCCEEEEE-----EE--ECSSC-CSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred             ccccccccCCcchheec-----cc--cccCC-cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence            42221111000 00011     11  12332 5899999999  999999999999999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-27  Score=260.34  Aligned_cols=208  Identities=10%  Similarity=0.134  Sum_probs=162.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEcc-------------------------------------
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIET-------------------------------------   90 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~---~~~~~~~-------------------------------------   90 (737)
                      .+|.+++|+|+|++|+++. ++.|++||+.+++   .+..+..                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            5889999999999777664 6799999999888   5555420                                     


Q ss_pred             ----------------cCccceEEEEEeeCCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCCCceeec--cCCCcee
Q 004685           91 ----------------GHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVK  151 (737)
Q Consensus        91 ----------------~h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~  151 (737)
                                      .|...|.+++|+|+  +.+| ++|+.||.|++||+....+        ..+..+.  .|...|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v~  153 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSD--ESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRPN  153 (450)
T ss_dssp             ----------------CCCCCEEEEEECTT--SSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCEE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCC--CCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCce
Confidence                            23337999999999  6885 8999999999999983112        1244444  5778999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecC--CCc
Q 004685          152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--RPH  229 (737)
Q Consensus       152 ~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~  229 (737)
                      +++|+| ++.+|++++.||.|.+|++........                     .......|...|.+++|+|+  .+.
T Consensus       154 ~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~sp~~~~~~  211 (450)
T 2vdu_B          154 AISIAE-DDTTVIIADKFGDVYSIDINSIPEEKF---------------------TQEPILGHVSMLTDVHLIKDSDGHQ  211 (450)
T ss_dssp             EEEECT-TSSEEEEEETTSEEEEEETTSCCCSSC---------------------CCCCSEECSSCEEEEEEEECTTSCE
T ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEecCCcccccc---------------------cceeeecccCceEEEEEcCCCCCCc
Confidence            999999 668999999999999999987753210                     11123356788999999996  247


Q ss_pred             EEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       230 ~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      +|++++.|+.|++||+++++.+..+.                   .+|.. .|.+++|+ ++.+|++++.|+.|++||+.
T Consensus       212 ~l~s~~~d~~i~vwd~~~~~~~~~~~-------------------~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~~  270 (450)
T 2vdu_B          212 FIITSDRDEHIKISHYPQCFIVDKWL-------------------FGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDWK  270 (450)
T ss_dssp             EEEEEETTSCEEEEEESCTTCEEEEC-------------------CCCSS-CEEEEEEC-STTEEEEEESSSEEEEEETT
T ss_pred             EEEEEcCCCcEEEEECCCCceeeeee-------------------cCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEECC
Confidence            99999999999999998776543321                   22333 69999999 99999999999999999999


Q ss_pred             CCC
Q 004685          310 HAG  312 (737)
Q Consensus       310 ~~~  312 (737)
                      +++
T Consensus       271 ~~~  273 (450)
T 2vdu_B          271 TGK  273 (450)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            865

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=4.9e-28  Score=264.85  Aligned_cols=204  Identities=15%  Similarity=0.205  Sum_probs=134.2

Q ss_pred             cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC-CCCCCCCCceeeccCC------------CceeEEEEec
Q 004685           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG-LDDNAITPSALYQCHT------------RRVKKLAVEV  157 (737)
Q Consensus        91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~h~------------~~v~~l~~~p  157 (737)
                      .+...|++++|+|+  +.+|++|+.||.|+|||+....... .....+.....+.+|.            ..|++++|+|
T Consensus        26 ~~~~~V~~v~~s~~--g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           26 AEADIISTVEFNHS--GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CGGGSEEEEEECSS--SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             cccCcEEEEEECCC--CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            36789999999999  7999999999999999998643211 0011123466778898            8899999999


Q ss_pred             CCC-cEEEEEeCCCcEEEEEcCCCCCCCCCCC--CCCc-----------cceEE--EeccCCceeeccCCCCCccceEEE
Q 004685          158 GNP-HVVWSASEDGTLRQHDFRQGSSCPPAGS--SHQE-----------CRNIL--LDLRCGAKRSLADPPKQTLSLKSC  221 (737)
Q Consensus       158 ~~~-~~l~s~s~Dg~I~vwdl~~~~~~~~~~~--~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~~~v~~i  221 (737)
                      ++. .+|++++.|+.|++||+...........  .+..           ....+  ................|...|.++
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            533 6888999999999999976432100000  0000           00000  000000000011235688899999


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC-CEEEEEeC
Q 004685          222 DISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYS  299 (737)
Q Consensus       222 ~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g-~~l~~g~~  299 (737)
                      +|+|+ +++|++| .|+.|++||++.. ..+..+...           +..+  .+|.. .|++++|+|++ .+|++|+.
T Consensus       184 ~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~--~~~~~-~v~~~~~~p~~~~~l~s~~~  247 (447)
T 3dw8_B          184 SINSD-YETYLSA-DDLRINLWHLEITDRSFNIVDIK-----------PANM--EELTE-VITAAEFHPNSCNTFVYSSS  247 (447)
T ss_dssp             EECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEECC-----------CSSG--GGCCC-CEEEEEECSSCTTEEEEEET
T ss_pred             EEcCC-CCEEEEe-CCCeEEEEECCCCCceeeeeecc-----------cccc--cccCc-ceEEEEECCCCCcEEEEEeC
Confidence            99997 6899998 7999999999843 222111000           0011  12333 69999999998 99999999


Q ss_pred             CCeEEEEEcCCCC
Q 004685          300 GEHVYLMDVNHAG  312 (737)
Q Consensus       300 dg~v~iwd~~~~~  312 (737)
                      ||.|++||+.++.
T Consensus       248 dg~i~iwd~~~~~  260 (447)
T 3dw8_B          248 KGTIRLCDMRASA  260 (447)
T ss_dssp             TSCEEEEETTTCS
T ss_pred             CCeEEEEECcCCc
Confidence            9999999998854

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=5.4e-27  Score=255.64  Aligned_cols=224  Identities=11%  Similarity=0.034  Sum_probs=166.8

Q ss_pred             ccccccccccc--cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc----ccCccceEEEE
Q 004685           27 NHSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTK  100 (737)
Q Consensus        27 ~~~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~----~~h~~~V~~v~  100 (737)
                      ++.+.+|....  .+.+....+..+. .+.+++|+|++.++++++.++.|++||+.+++....+.    .+|...|.+++
T Consensus        98 ~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~  176 (433)
T 3bws_A           98 ELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS  176 (433)
T ss_dssp             GGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE
T ss_pred             CCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEE
Confidence            33345554323  3345666666554 46699999988888888899999999999998876321    47888999999


Q ss_pred             EeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004685          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (737)
Q Consensus       101 ~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~  180 (737)
                      |+|+  +.++++++.|+.|++||+....          ....+..|...+.+++|+|++..++++++.|+.|++||++++
T Consensus       177 ~~~~--~~~~~s~~~d~~v~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  244 (433)
T 3bws_A          177 IPEH--NELWVSQMQANAVHVFDLKTLA----------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK  244 (433)
T ss_dssp             EGGG--TEEEEEEGGGTEEEEEETTTCC----------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             EcCC--CEEEEEECCCCEEEEEECCCce----------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence            9998  7899999999999999998532          256667889999999999965445567778999999999876


Q ss_pred             CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe--------CCCcEEEEECCCCCCcc
Q 004685          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--------SDAFARLYDRRMLPPLT  252 (737)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s--------~Dg~i~iwd~~~~~~~~  252 (737)
                      +..                         .... ....+.+++|+|+ ++.+++++        .|+.|++||+++++.+.
T Consensus       245 ~~~-------------------------~~~~-~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~  297 (433)
T 3bws_A          245 LEI-------------------------RKTD-KIGLPRGLLLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLID  297 (433)
T ss_dssp             EEE-------------------------EECC-CCSEEEEEEECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE
T ss_pred             cEE-------------------------EEec-CCCCceEEEEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEe
Confidence            521                         1111 1235889999997 46777777        58899999998765433


Q ss_pred             cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEE-EEEeCCCeEEEEEcCCCC
Q 004685          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l-~~g~~dg~v~iwd~~~~~  312 (737)
                      .+.                     +.. .+.+++|+|+++++ ++++.++.|++||+.+++
T Consensus       298 ~~~---------------------~~~-~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          298 TIG---------------------PPG-NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             EEE---------------------EEE-CEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred             ecc---------------------CCC-CcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence            221                     111 48889999999866 455779999999998743

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=3.8e-27  Score=238.84  Aligned_cols=219  Identities=16%  Similarity=0.169  Sum_probs=126.7

Q ss_pred             cccceeecccCC----ceEEEEEcCCCC---EEEEEeCCCcEEEEECCCC---eEEEEEcccCccceEEEEEeeCCCCCE
Q 004685           40 LSQERELEGHQG----CVNAISWNSKGS---LLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSDEL  109 (737)
Q Consensus        40 ~~~~~~l~~H~~----~V~~l~~s~~g~---~lasgs~dg~V~vwd~~~~---~~~~~~~~~h~~~V~~v~~sp~~~~~~  109 (737)
                      ++.+.+|+...+    .+.++.|-..+.   -++++++ ..|++|+...+   +.++++ ..|+.+|..+.+.|+. .++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~  101 (356)
T 2w18_A           25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVPDV-YNL  101 (356)
T ss_dssp             EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCTTC-CSC
T ss_pred             eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEE-eccCceeEEEEEcCcc-cce
Confidence            455566665544    255666655332   4556665 69999999988   888888 7899999999999986 555


Q ss_pred             EEEEECCCcEE-EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCC
Q 004685          110 VVSGAGDAEVR-LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPA  186 (737)
Q Consensus       110 l~sgs~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~Dg~I~vwdl~~~~~~~~~  186 (737)
                      +..+-.+-.+. ++-+.-...    ...+.......+|...|.++   + +++++.+++  .|+.|++|++....     
T Consensus       102 ~~~~~~~~~~~~v~sla~spd----~~~~~~~l~s~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG-----  168 (356)
T 2w18_A          102 VCVALGNLEIREIRALFCSSD----DESEKQVLLKSGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDG-----  168 (356)
T ss_dssp             EEEEECSSSEEEEEEECC----------CCEEEEEEEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTS-----
T ss_pred             eeeeeccccccceEEEEECCC----ccccccEEEeCCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCC-----
Confidence            55443322111 111111000    00001111112333333332   2 444554433  46777777764321     


Q ss_pred             CCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec--CCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCc
Q 004685          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (737)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (737)
                                       +  .+.....|...+..++|+|  .++.+|++++.|++|+|||+++++.+.++...       
T Consensus       169 -----------------~--~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~-------  222 (356)
T 2w18_A          169 -----------------G--GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID-------  222 (356)
T ss_dssp             -----------------C--EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC-------
T ss_pred             -----------------c--eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC-------
Confidence                             1  1222224556677777777  23689999999999999999998876665311       


Q ss_pred             cccccccccCCCCcccceeEEEEcCCCCEEE------------EEeCCCeEEEEEcCCC
Q 004685          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL------------LSYSGEHVYLMDVNHA  311 (737)
Q Consensus       265 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~------------~g~~dg~v~iwd~~~~  311 (737)
                                 ......+.+++|+|+|.+++            +|+.|++|++||..++
T Consensus       223 -----------~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg  270 (356)
T 2w18_A          223 -----------DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT  270 (356)
T ss_dssp             -----------C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred             -----------CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence                       01112478889999999874            4666788888887764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=2.8e-27  Score=259.02  Aligned_cols=177  Identities=18%  Similarity=0.192  Sum_probs=135.1

Q ss_pred             EEEEEcccCccce-EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcE
Q 004685           84 LLHSIETGHSANV-FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (737)
Q Consensus        84 ~~~~~~~~h~~~V-~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  162 (737)
                      ....+ .+|...| .+  +.++  +++|++|+.||.|++||+...          +.+..+.+|...|.++.|++   .+
T Consensus       110 ~~~~l-~~h~~~v~~~--~~~~--g~~l~sg~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~---~~  171 (445)
T 2ovr_B          110 SPKVL-KGHDDHVITC--LQFC--GNRIVSGSDDNTLKVWSAVTG----------KCLRTLVGHTGGVWSSQMRD---NI  171 (445)
T ss_dssp             CCEEE-ECSTTSCEEE--EEEE--TTEEEEEETTSCEEEEETTTC----------CEEEECCCCSSCEEEEEEET---TE
T ss_pred             eeEEe-cccCCCcEEE--EEEc--CCEEEEEECCCcEEEEECCCC----------cEEEEEcCCCCCEEEEEecC---CE
Confidence            34455 6888765 55  4555  689999999999999999863          23677889999999999974   68


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (737)
Q Consensus       163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i  242 (737)
                      +++|+.||.|++||+.+++.                         +.....|...|.+++|++   ..+++|+.|+.|++
T Consensus       172 l~s~~~dg~i~vwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~  223 (445)
T 2ovr_B          172 IISGSTDRTLKVWNAETGEC-------------------------IHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRV  223 (445)
T ss_dssp             EEEEETTSCEEEEETTTTEE-------------------------EEEECCCSSCEEEEEEET---TEEEEEETTSEEEE
T ss_pred             EEEEeCCCeEEEEECCcCcE-------------------------EEEECCCCCcEEEEEecC---CEEEEEeCCCEEEE
Confidence            99999999999999987652                         222335778899999974   58999999999999


Q ss_pred             EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCC
Q 004685          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD  322 (737)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~  322 (737)
                      ||+++++.+..+.                    +|.. .|.+++|  ++.++++|+.||.|++||+.+++.......+..
T Consensus       224 wd~~~~~~~~~~~--------------------~~~~-~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  280 (445)
T 2ovr_B          224 WDIETGQCLHVLM--------------------GHVA-AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN  280 (445)
T ss_dssp             EESSSCCEEEEEE--------------------CCSS-CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS
T ss_pred             EECCCCcEEEEEc--------------------CCcc-cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCC
Confidence            9999876544331                    2322 5999998  788999999999999999998655444444444


Q ss_pred             CCeeeee
Q 004685          323 ASKIMSF  329 (737)
Q Consensus       323 ~~~~~~~  329 (737)
                      .+..++|
T Consensus       281 ~v~~~~~  287 (445)
T 2ovr_B          281 RVYSLQF  287 (445)
T ss_dssp             CEEEEEE
T ss_pred             ceEEEEE
Confidence            4444443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=1.1e-27  Score=249.43  Aligned_cols=244  Identities=15%  Similarity=0.156  Sum_probs=189.7

Q ss_pred             CCCCCcccccccccccccccccceeecccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccce
Q 004685           21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANV   96 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V   96 (737)
                      ..+.+.++++++|+....+.....+|++|.++|++++|+|  ++++|++|+.|++|+|||+.+++  ....+ .+|...|
T Consensus        28 lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V  106 (316)
T 3bg1_A           28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSV  106 (316)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCC
T ss_pred             EEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCce
Confidence            3456788999999955444456788999999999999986  48999999999999999998874  55566 7899999


Q ss_pred             EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC----------------C
Q 004685           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN----------------P  160 (737)
Q Consensus        97 ~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~----------------~  160 (737)
                      .+++|+|+..+.+|++|+.|+.|++||++....       ......+.+|...|.+++|+|+.                +
T Consensus       107 ~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (316)
T 3bg1_A          107 NSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-------WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYI  179 (316)
T ss_dssp             CEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-------EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCC
T ss_pred             EEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-------cceeeeeccccCCcceEEEccccCCccccccccccCcccc
Confidence            999999974467999999999999999985321       11134567899999999999852                3


Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC---CcEEEEEeCC
Q 004685          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---PHLLLVGGSD  237 (737)
Q Consensus       161 ~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---~~~l~t~s~D  237 (737)
                      .+|++|+.|++|++||++....                      ...+..+..|...|.+++|+|+.   +.+|++++.|
T Consensus       180 ~~l~sgs~D~~v~lWd~~~~~~----------------------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          180 KRFASGGCDNLIKLWKEEEDGQ----------------------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             CBEECCBTTSBCCEEEECTTSC----------------------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred             ceEEEecCCCeEEEEEeCCCCc----------------------cceeeecccCCCceEEEEecCCCCCCCceEEEEcCC
Confidence            6899999999999999965421                      01233445788899999999974   3789999999


Q ss_pred             CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          238 AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +.|++||++.......         .     ...+  .+|. ..|.+++|+|++++|++++.|+.|++|+....
T Consensus       238 ~~v~iw~~~~~~~~~~---------~-----~~~~--~~~~-~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          238 GRVFIWTCDDASSNTW---------S-----PKLL--HKFN-DVVWHVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             CEEEEEECSSTTCCCC---------B-----CCEE--EECS-SCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             CeEEEEEccCccccch---------h-----hhhh--hcCC-CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence            9999999976321000         0     0001  1122 26999999999999999999999999998743

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=6.3e-27  Score=255.46  Aligned_cols=218  Identities=18%  Similarity=0.305  Sum_probs=181.7

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp  103 (737)
                      .+.++.|++|+  ..+.+....+.+|.+.|++++|  ++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|++
T Consensus       149 g~~dg~i~iwd--~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~  223 (435)
T 1p22_A          149 GLRDNTIKIWD--KNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFNN  223 (435)
T ss_dssp             EESSSCEEEEE--SSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECCT
T ss_pred             EeCCCeEEEEe--CCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEcC
Confidence            45678899999  5677888999999999999998  7899999999999999999999999999 78999999999964


Q ss_pred             CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       104 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                          .++++|+.||.|++||+......       .....+.+|...|.++.|   ++.++++|+.||.|++||+++++..
T Consensus       224 ----~~l~s~s~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~  289 (435)
T 1p22_A          224 ----GMMVTCSKDRSIAVWDMASPTDI-------TLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFV  289 (435)
T ss_dssp             ----TEEEEEETTSCEEEEECSSSSCC-------EEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEE
T ss_pred             ----CEEEEeeCCCcEEEEeCCCCCCc-------eeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEE
Confidence                58999999999999999864321       113667789999999999   3478999999999999999887522


Q ss_pred             CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (737)
                                               .....|...+.+++|+   +.++++|+.||.|++||+++++.+..+         
T Consensus       290 -------------------------~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~---------  332 (435)
T 1p22_A          290 -------------------------RTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVL---------  332 (435)
T ss_dssp             -------------------------EEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEE---------
T ss_pred             -------------------------EEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEE---------
Confidence                                     1223466788999985   369999999999999999987655443         


Q ss_pred             ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                                 .+|.. .|.+++|  ++.+|++|+.||.|++||+.++
T Consensus       333 -----------~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          333 -----------EGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             -----------CCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred             -----------eCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence                       22333 5999988  7889999999999999998763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=3.6e-27  Score=250.25  Aligned_cols=174  Identities=15%  Similarity=0.192  Sum_probs=136.4

Q ss_pred             EECCCCeEEEEEcccCccceEEEEEeeCC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEE
Q 004685           77 WSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV  155 (737)
Q Consensus        77 wd~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  155 (737)
                      |+....+.+..+ .+|...|++++|+|+. ++.+|++|+.||.|++||+.....        .....+.+|...|++++|
T Consensus        24 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--------~~~~~~~~h~~~v~~~~~   94 (368)
T 3mmy_A           24 DNHNPMKDIEVT-SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--------TIPKAQQMHTGPVLDVCW   94 (368)
T ss_dssp             CSSCTTCCEECS-SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--------EEEEEEEECSSCEEEEEE
T ss_pred             CCCCCcceeEec-cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--------eeEEEeccccCCEEEEEE
Confidence            445556666666 7999999999999981 128999999999999999985221        123677889999999999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEE--ecCCCcEEEE
Q 004685          156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPHLLLV  233 (737)
Q Consensus       156 ~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--sp~~~~~l~t  233 (737)
                      +| ++.+|++++.||.|++||+.+++..                          ....|...|.+++|  +|+ +.+|++
T Consensus        95 ~~-~~~~l~s~~~dg~v~iwd~~~~~~~--------------------------~~~~~~~~v~~~~~~~~~~-~~~l~~  146 (368)
T 3mmy_A           95 SD-DGSKVFTASCDKTAKMWDLSSNQAI--------------------------QIAQHDAPVKTIHWIKAPN-YSCVMT  146 (368)
T ss_dssp             CT-TSSEEEEEETTSEEEEEETTTTEEE--------------------------EEEECSSCEEEEEEEECSS-CEEEEE
T ss_pred             Cc-CCCEEEEEcCCCcEEEEEcCCCCce--------------------------eeccccCceEEEEEEeCCC-CCEEEE
Confidence            99 6689999999999999999876521                          01236778999999  776 589999


Q ss_pred             EeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          234 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ++.|+.|++||+++++.+..+..                    +.  .+.++.+.  +..+++++.++.+.+|++...
T Consensus       147 ~~~dg~i~vwd~~~~~~~~~~~~--------------------~~--~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~  200 (368)
T 3mmy_A          147 GSWDKTLKFWDTRSSNPMMVLQL--------------------PE--RCYCADVI--YPMAVVATAERGLIVYQLENQ  200 (368)
T ss_dssp             EETTSEEEEECSSCSSCSEEEEC--------------------SS--CEEEEEEE--TTEEEEEEGGGCEEEEECSSS
T ss_pred             ccCCCcEEEEECCCCcEEEEEec--------------------CC--CceEEEec--CCeeEEEeCCCcEEEEEeccc
Confidence            99999999999998776544421                    11  35556555  458999999999999999874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=2.7e-26  Score=246.43  Aligned_cols=186  Identities=16%  Similarity=0.177  Sum_probs=140.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCCCce
Q 004685           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (737)
Q Consensus        63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (737)
                      .++++++.|+.|++||+.+++.+..+ ..| ..+.+++|+|+  +.++ ++++.|+.|++||+....          .+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~-~~~~~~~~s~d--g~~l~~~~~~d~~i~v~d~~~~~----------~~~   68 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATI-PVG-SNPMGAVISPD--GTKVYVANAHSNDVSIIDTATNN----------VIA   68 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEE-ECS-SSEEEEEECTT--SSEEEEEEGGGTEEEEEETTTTE----------EEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEe-ecC-CCcceEEECCC--CCEEEEECCCCCeEEEEECCCCe----------EEE
Confidence            46889999999999999999998888 555 45899999999  6765 677799999999997532          244


Q ss_pred             eeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEE
Q 004685          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (737)
Q Consensus       142 ~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  221 (737)
                      .+..+ ..+.+++|+|++..++++++.++.|++||+.+++..              ..        +    .+...+.++
T Consensus        69 ~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~--------------~~--------~----~~~~~~~~~  121 (391)
T 1l0q_A           69 TVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA--------------GT--------V----KTGKSPLGL  121 (391)
T ss_dssp             EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--------------EE--------E----ECSSSEEEE
T ss_pred             EEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEE--------------EE--------E----eCCCCcceE
Confidence            44434 489999999965445566777899999999876522              00        0    012357899


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEE-EEEeCC
Q 004685          222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYSG  300 (737)
Q Consensus       222 ~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l-~~g~~d  300 (737)
                      +|+|++..++++++.|+.|++||+++++.+..+.                    .+.  .+..++|+|++++| ++++.+
T Consensus       122 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~--~~~~~~~~~dg~~l~~~~~~~  179 (391)
T 1l0q_A          122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--------------------VGR--SPKGIAVTPDGTKVYVANFDS  179 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------CCS--SEEEEEECTTSSEEEEEETTT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe--------------------cCC--CcceEEECCCCCEEEEEeCCC
Confidence            9999853344788889999999998876443331                    111  37899999999988 456678


Q ss_pred             CeEEEEEcCCC
Q 004685          301 EHVYLMDVNHA  311 (737)
Q Consensus       301 g~v~iwd~~~~  311 (737)
                      +.|++||+.++
T Consensus       180 ~~v~~~d~~~~  190 (391)
T 1l0q_A          180 MSISVIDTVTN  190 (391)
T ss_dssp             TEEEEEETTTT
T ss_pred             CEEEEEECCCC
Confidence            99999998874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.7e-27  Score=249.66  Aligned_cols=199  Identities=13%  Similarity=0.123  Sum_probs=149.9

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCC
Q 004685           57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA  136 (737)
Q Consensus        57 ~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~  136 (737)
                      .+.+++.+|++|+.||.|++||+.+++.+..+.   ...|.++.|+|.     +++++.|++|++|+...... ..+...
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~~-~~~~~~  113 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQIT-ILDSKT  113 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS-----EEEECSTTEEEEEETTTEEE-EEETTT
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc-----eEEecCCCeEEEEEccCceE-EeecCC
Confidence            445688899999999999999999999888873   567888888875     99999999999998763110 000000


Q ss_pred             CCCceee-ccCCCceeEEEEec--CCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC
Q 004685          137 ITPSALY-QCHTRRVKKLAVEV--GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  213 (737)
Q Consensus       137 ~~~~~~~-~~h~~~v~~l~~~p--~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (737)
                      ...+..+ ..|...|.+++|+|  ++ .++++++.||+|++||+++++..                        ......
T Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~------------------------~~~~~~  168 (343)
T 3lrv_A          114 NKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQY------------------------IVHSAK  168 (343)
T ss_dssp             CCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEE------------------------EEECCC
T ss_pred             cceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEE------------------------EEEecC
Confidence            1112222 35778999999999  54 78999999999999999987521                        000112


Q ss_pred             CccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc-ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC
Q 004685          214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL-TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  292 (737)
Q Consensus       214 ~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~  292 (737)
                      +...+.+++|+|+ +.+|++|+.|+.|++||+++++.+ ..+.                   .+|.. +|++++|+|+|.
T Consensus       169 ~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~~~~~~~~-------------------~~h~~-~v~~l~fs~~g~  227 (343)
T 3lrv_A          169 SDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQASSRFP-------------------VDEEA-KIKEVKFADNGY  227 (343)
T ss_dssp             SSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTTSCCEECC-------------------CCTTS-CEEEEEECTTSS
T ss_pred             CCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCCCCccEEe-------------------ccCCC-CEEEEEEeCCCC
Confidence            3456899999997 689999999999999999987654 2221                   11333 699999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCC
Q 004685          293 EVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       293 ~l~~g~~dg~v~iwd~~~~  311 (737)
                      +|++++. +.|++||+++.
T Consensus       228 ~l~s~~~-~~v~iwd~~~~  245 (343)
T 3lrv_A          228 WMVVECD-QTVVCFDLRKD  245 (343)
T ss_dssp             EEEEEES-SBEEEEETTSS
T ss_pred             EEEEEeC-CeEEEEEcCCC
Confidence            9999994 59999999874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=9.5e-26  Score=242.17  Aligned_cols=224  Identities=7%  Similarity=0.100  Sum_probs=170.0

Q ss_pred             CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccCccceEEEE
Q 004685           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK  100 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~  100 (737)
                      .....++.|++|+  ..+.+....+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+ ..+ ..+.+++
T Consensus         6 vs~~~d~~v~v~d--~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-~~~-~~v~~~~   80 (391)
T 1l0q_A            6 IANSESDNISVID--VTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAG-SSPQGVA   80 (391)
T ss_dssp             EEETTTTEEEEEE--TTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECS-SSEEEEE
T ss_pred             EEcCCCCEEEEEE--CCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE-ECC-CCccceE
Confidence            3455678999999  45667777888775 48999999999976 67779999999999999998887 444 3899999


Q ss_pred             EeeCCCCCEEE-EEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685          101 FVPETSDELVV-SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (737)
Q Consensus       101 ~sp~~~~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~  179 (737)
                      |+|+  +.+|+ +++.++.|++||+....          .+..+. +...+.+++|+|++..++++++.|+.|++||+.+
T Consensus        81 ~spd--g~~l~~~~~~~~~v~v~d~~~~~----------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  147 (391)
T 1l0q_A           81 VSPD--GKQVYVTNMASSTLSVIDTTSNT----------VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT  147 (391)
T ss_dssp             ECTT--SSEEEEEETTTTEEEEEETTTTE----------EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ECCC--CCEEEEEECCCCEEEEEECCCCe----------EEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            9999  67664 55567999999998632          134444 4457899999995544557888999999999987


Q ss_pred             CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC
Q 004685          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (737)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~  259 (737)
                      ++..           ..           +   .. ...+.+++|+|++..++++++.|+.|++||+++++.+..+.    
T Consensus       148 ~~~~-----------~~-----------~---~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----  197 (391)
T 1l0q_A          148 KAVI-----------NT-----------V---SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----  197 (391)
T ss_dssp             TEEE-----------EE-----------E---EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----
T ss_pred             CcEE-----------EE-----------E---ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----
Confidence            6522           00           0   01 23468999999854444788889999999998765433321    


Q ss_pred             CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe---CCCeEEEEEcCCC
Q 004685          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY---SGEHVYLMDVNHA  311 (737)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~---~dg~v~iwd~~~~  311 (737)
                                       +. ..+.+++|+|+|++|++++   .++.|++||+.++
T Consensus       198 -----------------~~-~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          198 -----------------VE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             -----------------CS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             -----------------cC-CCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence                             11 1488999999999999998   6899999998874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=3.5e-26  Score=246.74  Aligned_cols=256  Identities=15%  Similarity=0.213  Sum_probs=200.1

Q ss_pred             CCCccccccccccccc-c-cccceeecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEEcccC
Q 004685           23 RPDVNHSLQMHSSLVR-R-LSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGH   92 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~-~-~~~~~~l~~H~~~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~-------~~~~~~~~~h   92 (737)
                      ....++.|.+|+.... + .+....+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++       +.+..+ .+|
T Consensus        52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h  130 (402)
T 2aq5_A           52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGH  130 (402)
T ss_dssp             CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECC
T ss_pred             EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCC
Confidence            3566789999984221 1 245667889999999999999 9999999999999999999987       556677 789


Q ss_pred             ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee--ccCCCceeEEEEecCCCcEEEEEeCCC
Q 004685           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDG  170 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~Dg  170 (737)
                      ...|.+++|+|++ ..+|++|+.|+.|++||+....          .+..+  ..|...|.+++|+| ++.+|++++.|+
T Consensus       131 ~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~  198 (402)
T 2aq5_A          131 TKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGA----------AVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDK  198 (402)
T ss_dssp             SSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTE----------EEEEECTTTCCSCEEEEEECT-TSSCEEEEETTS
T ss_pred             CCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCC----------ccEEEecCCCCCceEEEEECC-CCCEEEEEecCC
Confidence            9999999999993 3799999999999999998632          25566  78999999999999 668899999999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC-CCCcc-ceEEEEEecCCCcEEEEE---eCCCcEEEEEC
Q 004685          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP-PKQTL-SLKSCDISSTRPHLLLVG---GSDAFARLYDR  245 (737)
Q Consensus       171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~i~~sp~~~~~l~t~---s~Dg~i~iwd~  245 (737)
                      .|++||+++++.+                         ... ..|.. .+.++.|+|+ +.+|++|   +.|+.|++||+
T Consensus       199 ~i~iwd~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~  252 (402)
T 2aq5_A          199 RVRVIEPRKGTVV-------------------------AEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDT  252 (402)
T ss_dssp             EEEEEETTTTEEE-------------------------EEEECSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEET
T ss_pred             cEEEEeCCCCcee-------------------------eeeccCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcC
Confidence            9999999886522                         111 12333 3789999997 6889998   79999999999


Q ss_pred             CCCCC-cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCc-ceeee--ec
Q 004685          246 RMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGG-RAMRY--TV  320 (737)
Q Consensus       246 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~-~~~~~--~~  320 (737)
                      ++... +....                   ..+. ..+.+++|+|++++|++++ .||.|++||+.+++. ...+.  .+
T Consensus       253 ~~~~~~~~~~~-------------------~~~~-~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~  312 (402)
T 2aq5_A          253 KHLEEPLSLQE-------------------LDTS-SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSS  312 (402)
T ss_dssp             TBCSSCSEEEE-------------------CCCC-SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECC
T ss_pred             ccccCCceEEe-------------------ccCC-CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccccc
Confidence            97653 11110                   1122 2589999999999997555 699999999998764 22332  24


Q ss_pred             CCCCeeeeeccCCCCcc
Q 004685          321 GDASKIMSFTPTLNGLE  337 (737)
Q Consensus       321 ~~~~~~~~~~p~~~~~~  337 (737)
                      ...+..++|+|+...+.
T Consensus       313 ~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          313 KESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             SSCCSEEEECCGGGSCG
T ss_pred             CCcccceEEecccccce
Confidence            58899999999865543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.6e-27  Score=253.48  Aligned_cols=240  Identities=9%  Similarity=0.027  Sum_probs=169.2

Q ss_pred             CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE
Q 004685           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~  101 (737)
                      .+++.|++++  +     ++....+.+|...|.+++|+|+|       .++.+.+|+.+..   ..+...|...|.+++|
T Consensus        31 ASas~D~TV~--d-----~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~---~~~~~~~~~~V~~vaw   93 (588)
T 2j04_A           31 LTTFPDISIG--Q-----PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN---GLLNSQPVCYPRVCKP   93 (588)
T ss_dssp             EECSSSEEEE--E-----ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS---CSSTTSCSCCEEEEEE
T ss_pred             EEEcCCceee--c-----ccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCc---eEeecCCCCcEEEEEE
Confidence            4467777777  3     44445668999999999999999       4556555554322   2232256889999999


Q ss_pred             eeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC-----ceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR-----RVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (737)
Q Consensus       102 sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~p~~~~~l~s~s~Dg~I~vwd  176 (737)
                      +|+  |.+|++++.||.|++||...            .+..+. |..     .|.+++|+| ++++|++|+.||+|++||
T Consensus        94 SPd--G~~LAs~s~dg~V~iwd~~~------------~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd  157 (588)
T 2j04_A           94 SPI--DDWMAVLSNNGNVSVFKDNK------------MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFS  157 (588)
T ss_dssp             CSS--SSCEEEEETTSCEEEEETTE------------EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEE
T ss_pred             CCC--CCEEEEEeCCCcEEEEeCCc------------eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEE
Confidence            999  79999999999999999542            144455 554     599999999 679999999999999999


Q ss_pred             cCCCCCCCCCCCCCCccceEEEeccCCceeec-cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSL-ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (737)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~  255 (737)
                      +..+.....        ..+..       ..+ ....+|...|.+++|+|+ +  +++++.|+.|++||+........  
T Consensus       158 ~~~~~l~~~--------~~i~l-------~ti~~~~~gh~~~V~sVawSPd-g--Laass~D~tVrlWd~~~~~~~~~--  217 (588)
T 2j04_A          158 IRKNSENTP--------EFYFE-------SSIRLSDAGSKDWVTHIVWYED-V--LVAALSNNSVFSMTVSASSHQPV--  217 (588)
T ss_dssp             CCCCTTTCC--------CCEEE-------EEEECSCTTCCCCEEEEEEETT-E--EEEEETTCCEEEECCCSSSSCCC--
T ss_pred             CCCCccccc--------cceee-------eeeecccccccccEEEEEEcCC-c--EEEEeCCCeEEEEECCCCccccc--
Confidence            988642100        00000       001 112356789999999996 4  88999999999999987552100  


Q ss_pred             CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeee--ccC
Q 004685          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF--TPT  332 (737)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~p~  332 (737)
                              ...     +. .+|. ..|.+++|+  |.+|++++ ++.|++||+..+.......++...+..++|  +|+
T Consensus       218 --------~~t-----L~-~~h~-~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d  278 (588)
T 2j04_A          218 --------SRM-----IQ-NASR-RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKE  278 (588)
T ss_dssp             --------EEE-----EE-CCCS-SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSS
T ss_pred             --------eee-----ec-cccc-CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCC
Confidence                    000     00 1232 259999999  68888887 699999999986543444466666677777  553

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.2e-26  Score=242.50  Aligned_cols=244  Identities=16%  Similarity=0.179  Sum_probs=196.9

Q ss_pred             CCCcccccccccccccccccceeecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEE
Q 004685           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFC   98 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~   98 (737)
                      ..+.++.|++|+....+.+....+.+|.++|++++|+++  +++|++|+.||.|++||+.+++  .+..+ ..|...|.+
T Consensus        28 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~  106 (379)
T 3jrp_A           28 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNS  106 (379)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEE
T ss_pred             EEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEE
Confidence            455788999999665577888999999999999999987  9999999999999999999987  66666 689999999


Q ss_pred             EEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC------------CCcEEEEE
Q 004685           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG------------NPHVVWSA  166 (737)
Q Consensus        99 v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~------------~~~~l~s~  166 (737)
                      ++|+|+..+.+|++++.|+.|++||+......        ....+..|...|.+++|+|.            ++.+|+++
T Consensus       107 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~  178 (379)
T 3jrp_A          107 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG  178 (379)
T ss_dssp             EEECCGGGCSEEEEEETTSEEEEEECCTTSCC--------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred             EEeCCCCCCCEEEEecCCCcEEEEecCCCCce--------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence            99999832489999999999999999864322        24567789999999999995            46899999


Q ss_pred             eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC--CcEEEEEeCCCcEEEEE
Q 004685          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYD  244 (737)
Q Consensus       167 s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~t~s~Dg~i~iwd  244 (737)
                      +.|+.|++||++.....                     ...+.....|...|.+++|+|+.  +.+|++++.||.|++||
T Consensus       179 ~~dg~i~i~d~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          179 GADNLVKIWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             ETTSCEEEEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             eCCCeEEEEEecCCCcc---------------------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence            99999999999876521                     01122334677899999999974  68999999999999999


Q ss_pred             CCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      ++.........               ......+ ...|++++|+|++++|++++.||.|++|++....
T Consensus       238 ~~~~~~~~~~~---------------~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          238 QDNEQGPWKKT---------------LLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             ESSTTSCCEEE---------------ESSSSCC-SSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             CCCCCccceee---------------eeccccC-CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            98764211100               0000112 2369999999999999999999999999998754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=5.1e-26  Score=240.99  Aligned_cols=83  Identities=19%  Similarity=0.229  Sum_probs=78.2

Q ss_pred             eEEEeeecccccceeeeecccCCCCEEEEecCCCc-EEEEEcCcccEEEEee-c-CCCceEEEEecCCCCeEEEEecCCc
Q 004685          616 KQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGR-WFIWEKQTGRLIKMLL-G-DEAVVNCVQCHPFDCVVATSGIDNT  692 (737)
Q Consensus       616 ~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~-i~iWd~~t~~~~~~l~-g-H~~~V~~v~~sp~~~~l~S~~~Dg~  692 (737)
                      .+.+.+|.+.++++.    |+|||++||||+.|++ |+|||+.+++++..|. | |.+.|++++|+|++++|+|++.|++
T Consensus       188 ~~~~~~h~~~v~~~~----~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~  263 (355)
T 3vu4_A          188 GVLIKAHTNPIKMVR----LNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT  263 (355)
T ss_dssp             CEEECCCSSCEEEEE----ECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred             cEEEEccCCceEEEE----ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence            457889999998887    9999999999999998 9999999999999999 7 9999999999999999999999999


Q ss_pred             EEEEcCCCCC
Q 004685          693 IKIWTPSASV  702 (737)
Q Consensus       693 i~lW~~~~~~  702 (737)
                      |+|||+..+.
T Consensus       264 v~iw~~~~~~  273 (355)
T 3vu4_A          264 LHVFEIFNDQ  273 (355)
T ss_dssp             EEEEESSCCS
T ss_pred             EEEEEccCCC
Confidence            9999998764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=4.6e-26  Score=242.15  Aligned_cols=231  Identities=13%  Similarity=0.079  Sum_probs=172.4

Q ss_pred             Cccccccccccccccc--cccee-----ecccCCceEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEEcccCccc
Q 004685           25 DVNHSLQMHSSLVRRL--SQERE-----LEGHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSAN   95 (737)
Q Consensus        25 ~~~~~~~~~~~~~~~~--~~~~~-----l~~H~~~V~~l~~s~~g~~lasg--s~dg~V~vwd~~~~~~~~~~~~~h~~~   95 (737)
                      ..++.+++|+......  +....     ...+...+.+++|||||++||++  +.|++|+|||+.+++.+..+  .|...
T Consensus       101 ~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~  178 (365)
T 4h5i_A          101 KGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGE  178 (365)
T ss_dssp             SCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSC
T ss_pred             cCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCc
Confidence            3466777776322211  11111     22345568999999999998755  47899999999999998887  37788


Q ss_pred             eEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC----c
Q 004685           96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----T  171 (737)
Q Consensus        96 V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg----~  171 (737)
                      |.+++|+|+  +.+|++++.++ +++|+.......        .......|...|.+++|+| ++.++++++.|+    .
T Consensus       179 V~~v~fspd--g~~l~s~s~~~-~~~~~~~~~~~~--------~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~  246 (365)
T 4h5i_A          179 VKDLHFSTD--GKVVAYITGSS-LEVISTVTGSCI--------ARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIV  246 (365)
T ss_dssp             CCEEEECTT--SSEEEEECSSC-EEEEETTTCCEE--------EEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEE
T ss_pred             eEEEEEccC--CceEEecccee-EEEEEeccCcce--------eeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeE
Confidence            999999999  79999998554 566665543211        1234557888999999999 668888988887    5


Q ss_pred             EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004685          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (737)
Q Consensus       172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~  251 (737)
                      ++.|++......                     .........|...|++++|+|+ +++||+|+.|+.|+|||+++++.+
T Consensus       247 i~~~~~~~~~~~---------------------~~~~~~~~~~~~~V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~~~~  304 (365)
T 4h5i_A          247 LTKISIKSGNTS---------------------VLRSKQVTNRFKGITSMDVDMK-GELAVLASNDNSIALVKLKDLSMS  304 (365)
T ss_dssp             EEEEEEETTEEE---------------------EEEEEEEESSCSCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEE
T ss_pred             Eeecccccceec---------------------ceeeeeecCCCCCeEeEEECCC-CCceEEEcCCCEEEEEECCCCcEE
Confidence            788888765411                     0112223356778999999997 689999999999999999988765


Q ss_pred             ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ..+.                   .+|.. .|++|+|+|||++|++|+.|++|+|||+...
T Consensus       305 ~~~~-------------------~gH~~-~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          305 KIFK-------------------QAHSF-AITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEET-------------------TSSSS-CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEec-------------------CcccC-CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            4432                   33444 6999999999999999999999999999753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=4.9e-25  Score=240.01  Aligned_cols=248  Identities=19%  Similarity=0.230  Sum_probs=191.2

Q ss_pred             CCCCcccccccccccc--------cccccceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeE-------E
Q 004685           22 TRPDVNHSLQMHSSLV--------RRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL-------L   85 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~--------~~~~~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~-------~   85 (737)
                      .....++.|++|+...        ...++..++.+|...|++|+|+|++. +|++|+.||.|++||+.++..       .
T Consensus       145 at~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  224 (430)
T 2xyi_A          145 ATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAK  224 (430)
T ss_dssp             EEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECS
T ss_pred             EEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccc
Confidence            3445678899999543        22678889999999999999999988 999999999999999987322       3


Q ss_pred             EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004685           86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  165 (737)
Q Consensus        86 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  165 (737)
                      ..+ ..|...|.+++|+|+. +.+|++++.||.|++||++....       ..+...+..|...|++++|+|.+..+|++
T Consensus       225 ~~~-~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~p~~~~~l~t  295 (430)
T 2xyi_A          225 NIF-TGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNT-------SKPSHTVDAHTAEVNCLSFNPYSEFILAT  295 (430)
T ss_dssp             EEE-CCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCS-------SSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred             eee-cCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCC-------CcceeEeecCCCCeEEEEeCCCCCCEEEE
Confidence            445 6899999999999954 78999999999999999996431       13366777899999999999977668999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~  245 (737)
                      |+.||.|++||++.....                        +.....|...|.+++|+|++..+|++++.|+.|++||+
T Consensus       296 g~~dg~v~vwd~~~~~~~------------------------~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~  351 (430)
T 2xyi_A          296 GSADKTVALWDLRNLKLK------------------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL  351 (430)
T ss_dssp             EETTSEEEEEETTCTTSC------------------------SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred             EeCCCeEEEEeCCCCCCC------------------------eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999975421                        22223467889999999986678999999999999999


Q ss_pred             CCCCCcccccC-CCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEEEEeCCCeEEEEEcCC
Q 004685          246 RMLPPLTSCQK-RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       246 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~~g~~dg~v~iwd~~~  310 (737)
                      +.......... ...++..+..       ..+|. ..|++++|+|++. +|++++.||.|++|++..
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~-------~~~h~-~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          352 SKIGEEQSTEDAEDGPPELLFI-------HGGHT-AKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             GGTTCCCCHHHHHHCCTTEEEE-------CCCCS-SCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCccccCccccccCCcceEEE-------cCCCC-CCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            86432110000 0000000000       12233 3699999999999 899999999999999986

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=6.7e-25  Score=230.43  Aligned_cols=268  Identities=13%  Similarity=0.143  Sum_probs=191.2

Q ss_pred             CCCCcccccccccccccc--cccceeecccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCC---------eEEEEE
Q 004685           22 TRPDVNHSLQMHSSLVRR--LSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSR---------KLLHSI   88 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~H~~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~---------~~~~~~   88 (737)
                      ...+.++.|++|+.....  .+....+.+|...|++++|+|  ++++|++|+.||.|++||+.++         +.+..+
T Consensus        27 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  106 (351)
T 3f3f_A           27 ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL  106 (351)
T ss_dssp             EEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred             EEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee
Confidence            345678899999954322  256778899999999999999  6999999999999999999887         556677


Q ss_pred             cccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC--C-CCCceeeccCCCceeEEEEecC--CCcEE
Q 004685           89 ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN--A-ITPSALYQCHTRRVKKLAVEVG--NPHVV  163 (737)
Q Consensus        89 ~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~-~~~~~~~~~h~~~v~~l~~~p~--~~~~l  163 (737)
                       ..|...|.+++|+|+.++.+|++++.||.|++||++.......-..  . .........|...+.+++|+|.  ++.++
T Consensus       107 -~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l  185 (351)
T 3f3f_A          107 -NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL  185 (351)
T ss_dssp             -CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred             -cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence             7899999999999983248999999999999999986443211000  0 0000111257889999999995  37899


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCC---cEEEEEeCCCcE
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFA  240 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~---~~l~t~s~Dg~i  240 (737)
                      ++++.|+.+.+|+...+..                       ..+.....|...|.+++|+|+++   ++|++++.||.|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i  242 (351)
T 3f3f_A          186 AVSALEQAIIYQRGKDGKL-----------------------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI  242 (351)
T ss_dssp             EEEETTEEEEEEECTTSCE-----------------------EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred             EEecCCCcEEEEccCCCce-----------------------eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence            9999999998887766541                       12334456788999999999742   799999999999


Q ss_pred             EEEECCCCCCcccccCCCCCCCCc-------------------------cccccccc-cCCCCcccceeEEEEcCCCCEE
Q 004685          241 RLYDRRMLPPLTSCQKRMSPPPCV-------------------------NYFCPMHL-SEHGRSSLHLTHVTFSPNGEEV  294 (737)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~-~~~~~~~~~i~~v~~sp~g~~l  294 (737)
                      ++||++..................                         .......+ ...+|.. .|++++|+|++++|
T Consensus       243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l  321 (351)
T 3f3f_A          243 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG-EVWSVSWNLTGTIL  321 (351)
T ss_dssp             EEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS-CEEEEEECSSSCCE
T ss_pred             EEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc-cEEEEEEcCCCCEE
Confidence            999998753221111000000000                         00000000 0123433 69999999999999


Q ss_pred             EEEeCCCeEEEEEcCCCCcc
Q 004685          295 LLSYSGEHVYLMDVNHAGGR  314 (737)
Q Consensus       295 ~~g~~dg~v~iwd~~~~~~~  314 (737)
                      ++++.||.|++|++.+++..
T Consensus       322 ~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          322 SSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             EEEETTSCEEEEEECTTSCE
T ss_pred             EEecCCCcEEEEecCcCcch
Confidence            99999999999999986543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=3e-24  Score=239.51  Aligned_cols=229  Identities=11%  Similarity=0.128  Sum_probs=164.9

Q ss_pred             CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeEEEEEcccCccceEEE
Q 004685           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY--SSRKLLHSIETGHSANVFCT   99 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~--~~~~~~~~~~~~h~~~V~~v   99 (737)
                      .....+++|.+|+  ..+.+.+.++..+.. +.+++|+|+|++|++++.|+.|++||+  .+++.+..+ . +...+..+
T Consensus       153 vs~~~d~~V~v~D--~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-~-~g~~p~~v  227 (543)
T 1nir_A          153 VTLRDAGQIALVD--GDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-K-IGIEARSV  227 (543)
T ss_dssp             EEEGGGTEEEEEE--TTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-E-CCSEEEEE
T ss_pred             EEEcCCCeEEEEE--CCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-e-cCCCcceE
Confidence            3455678899998  556677888883333 899999999999999999999999999  888888888 3 45668999


Q ss_pred             EEee----CCCCCEEEEEE-CCCcEEEEecCCCCCCCCCCCCCCCceeecc----------CC-CceeEEEEecCCCcEE
Q 004685          100 KFVP----ETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HT-RRVKKLAVEVGNPHVV  163 (737)
Q Consensus       100 ~~sp----~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----------h~-~~v~~l~~~p~~~~~l  163 (737)
                      +|+|    +  +.+|++++ .+++|.+||..+.+          ++..+..          |. ..+..+.++|+++.++
T Consensus       228 a~sp~~~~d--g~~l~v~~~~~~~v~v~D~~t~~----------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~  295 (543)
T 1nir_A          228 ESSKFKGYE--DRYTIAGAYWPPQFAIMDGETLE----------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  295 (543)
T ss_dssp             EECCSTTCT--TTEEEEEEEESSEEEEEETTTCC----------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             EeCCCcCCC--CCEEEEEEccCCeEEEEeccccc----------cceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence            9999    8  78888887 48999999987632          2333332          22 3789999999887888


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEE-EEEeCCCcEEE
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARL  242 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~t~s~Dg~i~i  242 (737)
                      ++...++.|.+||+.+.+.+           . +.        .+    .+...+..+.|+|++ ++| +++..++.|.+
T Consensus       296 vs~~~~g~i~vvd~~~~~~l-----------~-~~--------~i----~~~~~~~~~~~spdg-~~l~va~~~~~~v~v  350 (543)
T 1nir_A          296 VNVKETGKVLLVNYKDIDNL-----------T-VT--------SI----GAAPFLHDGGWDSSH-RYFMTAANNSNKVAV  350 (543)
T ss_dssp             EEETTTTEEEEEECTTSSSC-----------E-EE--------EE----ECCSSCCCEEECTTS-CEEEEEEGGGTEEEE
T ss_pred             EEECCCCeEEEEEecCCCcc-----------e-eE--------Ee----ccCcCccCceECCCC-CEEEEEecCCCeEEE
Confidence            89999999999999876522           0 00        01    012346678999985 555 45566899999


Q ss_pred             EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC-CCEEEEEe-CCCeEEEEEcCC
Q 004685          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSY-SGEHVYLMDVNH  310 (737)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-g~~l~~g~-~dg~v~iwd~~~  310 (737)
                      ||+.+++.+..+....                ..|.+ ....+ ++|+ +..++++. .|++|.+||+.+
T Consensus       351 ~D~~tg~l~~~i~~g~----------------~ph~g-~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          351 IDSKDRRLSALVDVGK----------------TPHPG-RGANF-VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             EETTTTEEEEEEECSS----------------SBCCT-TCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             EECCCCeEEEeeccCC----------------CCCCC-CCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence            9999887655443110                11221 12223 5787 55556654 589999999887

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.1e-24  Score=253.95  Aligned_cols=245  Identities=16%  Similarity=0.179  Sum_probs=197.5

Q ss_pred             CCCCcccccccccccccccccceeecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceE
Q 004685           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVF   97 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~   97 (737)
                      ...+.++.|++|+....+.+...++.+|.++|++++|+|+  +++|++|+.||.|++||+.+++  .+..+ ..|...|.
T Consensus        25 atg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~  103 (753)
T 3jro_A           25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVN  103 (753)
T ss_dssp             EEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEE
T ss_pred             EEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeE
Confidence            3456789999999665577888999999999999999987  9999999999999999999886  56666 78999999


Q ss_pred             EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC------------CCcEEEE
Q 004685           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG------------NPHVVWS  165 (737)
Q Consensus        98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~------------~~~~l~s  165 (737)
                      +++|+|+.++.+|++|+.||.|++||++.....        ....+.+|...|.+++|+|.            ++.++++
T Consensus       104 ~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~--------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~s  175 (753)
T 3jro_A          104 SVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT  175 (753)
T ss_dssp             EEEECCGGGCSEEEEEETTSEEEEEECCSSSCC--------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEE
T ss_pred             EEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc--------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEE
Confidence            999999833489999999999999999865322        24567789999999999995            4688999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC--CcEEEEEeCCCcEEEE
Q 004685          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLY  243 (737)
Q Consensus       166 ~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~t~s~Dg~i~iw  243 (737)
                      |+.||.|++||++.+...                     .........|...|.+++|+|+.  +.+|++++.||.|++|
T Consensus       176 gs~dg~I~iwd~~~~~~~---------------------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw  234 (753)
T 3jro_A          176 GGADNLVKIWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW  234 (753)
T ss_dssp             EETTSCEEEEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred             EECCCeEEEEeccCCccc---------------------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence            999999999999876421                     01122334678899999999974  6899999999999999


Q ss_pred             ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      |++++.......               .....++. ..|++++|+|+|.+|++|+.||.|++|++....
T Consensus       235 d~~~~~~~~~~~---------------~~~~~~~~-~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          235 TQDNEQGPWKKT---------------LLKEEKFP-DVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EESSSSSCCBCC---------------BSSSSCCS-SCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             cCCCCCCcceeE---------------EeccCCCC-CceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            998764211100               00001122 369999999999999999999999999998643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.3e-23  Score=230.27  Aligned_cols=251  Identities=12%  Similarity=0.058  Sum_probs=184.5

Q ss_pred             ccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004685           48 GHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYS--SRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~--~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd  123 (737)
                      +|.+.|++++|+|++++| ++|+.||.|+|||+.  +++.+..+. ..|...|.+++|+|+  +.+|++|+.||.|++|+
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED--DTTVIIADKFGDVYSID  177 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT--SSEEEEEETTSEEEEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC--CCEEEEEeCCCcEEEEe
Confidence            566689999999999996 899999999999999  888777762 156789999999999  79999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004685          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG--NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (737)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~  201 (737)
                      +.......      .+...+.+|...|++++|+|+  ++.+|++++.|+.|++||++++..+                  
T Consensus       178 ~~~~~~~~------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~------------------  233 (450)
T 2vdu_B          178 INSIPEEK------FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV------------------  233 (450)
T ss_dssp             TTSCCCSS------CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE------------------
T ss_pred             cCCccccc------ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee------------------
Confidence            98643211      024467789999999999994  1689999999999999999877532                  


Q ss_pred             CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCC-CCc-ccccccc--ccCCCC
Q 004685          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP-PCV-NYFCPMH--LSEHGR  277 (737)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~-~~~~~~~--~~~~~~  277 (737)
                            ......|...|.+++|+ + +.+|++++.|+.|++||+++++.+..+....... .+. ....+..  ......
T Consensus       234 ------~~~~~~h~~~v~~~~~s-d-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (450)
T 2vdu_B          234 ------DKWLFGHKHFVSSICCG-K-DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI  305 (450)
T ss_dssp             ------EEECCCCSSCEEEEEEC-S-TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred             ------eeeecCCCCceEEEEEC-C-CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence                  11133577899999999 5 6899999999999999999987665543110000 000 0000000  000001


Q ss_pred             cccceeEEEEcCCCCEEEEEe-CCCeEEEEEc--CCCC--cceeeeecCCCCeeeeeccC
Q 004685          278 SSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDV--NHAG--GRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       278 ~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~--~~~~--~~~~~~~~~~~~~~~~~~p~  332 (737)
                      ....|.+++|+|++++|++++ .|+.|++|++  .++.  ...........+..++|+|.
T Consensus       306 ~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~  365 (450)
T 2vdu_B          306 IEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND  365 (450)
T ss_dssp             BCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT
T ss_pred             ceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC
Confidence            123599999999999999999 7999999999  4432  22222223367888999984

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.92  E-value=1e-24  Score=234.31  Aligned_cols=258  Identities=9%  Similarity=0.091  Sum_probs=169.8

Q ss_pred             CCCCCccccccccccccccc---ccceeecccCCceEEEEEcC--------CCCEEEEEeCCCcEEEEECCCCeEEEEEc
Q 004685           21 DTRPDVNHSLQMHSSLVRRL---SQERELEGHQGCVNAISWNS--------KGSLLISGSDDTHINVWSYSSRKLLHSIE   89 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~---~~~~~l~~H~~~V~~l~~s~--------~g~~lasgs~dg~V~vwd~~~~~~~~~~~   89 (737)
                      ..+.+.++++++|+......   .+...+.||.+.|++++|+|        |+++||+|+.|++|+|||+.++..+..+ 
T Consensus       104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~-  182 (393)
T 4gq1_A          104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG-  182 (393)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE-
T ss_pred             EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee-
Confidence            44567789999999554432   34556889999999999998        7899999999999999999988877777 


Q ss_pred             ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC---------------CCCCceeeccCCCceeEEE
Q 004685           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN---------------AITPSALYQCHTRRVKKLA  154 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---------------~~~~~~~~~~h~~~v~~l~  154 (737)
                      ..|..+|.+++|+|+. +.+|++|+.|++|++||++..........               .........+|...+.++.
T Consensus       183 ~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~  261 (393)
T 4gq1_A          183 YPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR  261 (393)
T ss_dssp             EECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE
T ss_pred             cCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee
Confidence            6789999999999983 45899999999999999986433211000               0001122356888999999


Q ss_pred             EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec-CCCcEEEE
Q 004685          155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLV  233 (737)
Q Consensus       155 ~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~~l~t  233 (737)
                      |.+.++..|++++.|+++++||+..+................  ... ..   ......+...+ ...|+| .++.++++
T Consensus       262 ~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~--~~~-~~---~~~~~~~~~~~-~~~~~~~~~~~~~~s  334 (393)
T 4gq1_A          262 WIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK--NLL-PN---VQGISLFPSLL-GACPHPRYMDYFATA  334 (393)
T ss_dssp             EETTTTCEEEEECTTSEEEEEEC---------------------CCS-CS---EEEECSSCCSS-CCEECSSCTTEEEEE
T ss_pred             eecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE--EEc-cc---cccccccCcce-eEEEccCCCCEEEEE
Confidence            986577899999999999999998776432221111000000  000 00   00001111222 334444 33456777


Q ss_pred             EeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          234 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       234 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      |+.||.|++||+.+++......                    ++.. +|.+++|+|||++|++++.+| +.+|.+.
T Consensus       335 gs~Dg~V~lwd~~~~~~~~~~~--------------------~~~~-~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          335 HSQHGLIQLINTYEKDSNSIPI--------------------QLGM-PIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ETTTTEEEEEETTCTTCCEEEE--------------------ECSS-CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             ECCCCEEEEEECCCCcEEEEec--------------------CCCC-cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            8899999999999876543321                    1222 699999999999999998765 6666554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=4e-23  Score=224.93  Aligned_cols=206  Identities=9%  Similarity=0.095  Sum_probs=146.3

Q ss_pred             cCCceEEEE---EcCCCCEEEEEe--------------CCC--cEEEEECCCC--eEEEEEcccCccceEEEEEeeCCCC
Q 004685           49 HQGCVNAIS---WNSKGSLLISGS--------------DDT--HINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSD  107 (737)
Q Consensus        49 H~~~V~~l~---~s~~g~~lasgs--------------~dg--~V~vwd~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~  107 (737)
                      ....+..++   |+|++..++..+              .++  .|.+||..++  +.+..+ ..+ ..+.+++|+|+  +
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~-~~~~~~~~s~~--~  134 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRF-KTG-FQPKSVRFIDN--T  134 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEE-ECS-SCBCCCEESSS--S
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEE-cCC-CCceEEEEeCC--C
Confidence            345678888   888877665432              233  3444444334  455555 333 45669999996  7


Q ss_pred             CEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 004685          108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (737)
Q Consensus       108 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~  187 (737)
                      .++++++.|+.|++||+..+....     ......+.+|...|.+++|++ ++.++++++.|+.|++||+++++..    
T Consensus       135 ~~~~~~~~~~~i~~~d~~~g~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~----  204 (433)
T 3bws_A          135 RLAIPLLEDEGMDVLDINSGQTVR-----LSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYK----  204 (433)
T ss_dssp             EEEEEBTTSSSEEEEETTTCCEEE-----ECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEE----
T ss_pred             eEEEEeCCCCeEEEEECCCCeEee-----ecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEE----
Confidence            888888899999999998643211     001114567889999999988 6689999999999999999876521    


Q ss_pred             CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (737)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (737)
                                           .....+...+.+++|+|++..++++++.|+.|++||+++++.+..+.            
T Consensus       205 ---------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~------------  251 (433)
T 3bws_A          205 ---------------------ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD------------  251 (433)
T ss_dssp             ---------------------EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC------------
T ss_pred             ---------------------EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec------------
Confidence                                 11113456789999999854444666689999999998776443321            


Q ss_pred             ccccccCCCCcccceeEEEEcCCCCEEEEEe--------CCCeEEEEEcCCC
Q 004685          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--------SGEHVYLMDVNHA  311 (737)
Q Consensus       268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~--------~dg~v~iwd~~~~  311 (737)
                              .+  ..+.+++|+|+|++|++++        .|+.|++||+.++
T Consensus       252 --------~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          252 --------KI--GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             --------CC--SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred             --------CC--CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence                    11  1489999999999999998        4889999998763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=7.8e-24  Score=223.10  Aligned_cols=243  Identities=9%  Similarity=0.059  Sum_probs=181.0

Q ss_pred             CCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCeEEEEEccc
Q 004685           21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS---------SRKLLHSIETG   91 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~---------~~~~~~~~~~~   91 (737)
                      ..+.+.++.|++|+  ..+.+.+.++.  ...|.++.|+|+   +++|+.|++|++|+..         +++.+..+...
T Consensus        51 l~sg~~Dg~v~iwd--~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  123 (343)
T 3lrv_A           51 CMCRCEDGALHFTQ--LKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD  123 (343)
T ss_dssp             EEEEEETTEEEEEE--ESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             EEEECCCCcEEEEE--CCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence            45577889999999  45556666665  567889999998   9999999999999665         55556666457


Q ss_pred             CccceEEEEEee--CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEeC
Q 004685           92 HSANVFCTKFVP--ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASE  168 (737)
Q Consensus        92 h~~~V~~v~~sp--~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~  168 (737)
                      |..+|.+++|+|  +  +.+|++|+.||.|++||++....          .... ..|...|++++|+| ++.+|++|+.
T Consensus       124 ~~~~v~~~~~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~----------~~~~~~~~~~~i~~~~~~p-dg~~lasg~~  190 (343)
T 3lrv_A          124 SANEIIYMYGHNEVN--TEYFIWADNRGTIGFQSYEDDSQ----------YIVHSAKSDVEYSSGVLHK-DSLLLALYSP  190 (343)
T ss_dssp             CSSCEEEEECCC-----CCEEEEEETTCCEEEEESSSSCE----------EEEECCCSSCCCCEEEECT-TSCEEEEECT
T ss_pred             CCCCEEEEEcCCCCC--CCEEEEEeCCCcEEEEECCCCcE----------EEEEecCCCCceEEEEECC-CCCEEEEEcC
Confidence            888999999999  7  79999999999999999986331          2333 34566899999999 6689999999


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCC-CccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK-QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~  247 (737)
                      ||.|++||+++++..                        ...... |...|.+++|+|+ +.+|++++ |+.|++||+++
T Consensus       191 dg~i~iwd~~~~~~~------------------------~~~~~~~h~~~v~~l~fs~~-g~~l~s~~-~~~v~iwd~~~  244 (343)
T 3lrv_A          191 DGILDVYNLSSPDQA------------------------SSRFPVDEEAKIKEVKFADN-GYWMVVEC-DQTVVCFDLRK  244 (343)
T ss_dssp             TSCEEEEESSCTTSC------------------------CEECCCCTTSCEEEEEECTT-SSEEEEEE-SSBEEEEETTS
T ss_pred             CCEEEEEECCCCCCC------------------------ccEEeccCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEEcCC
Confidence            999999999987632                        012223 7789999999997 58999999 55999999998


Q ss_pred             CCCcccccCCCCCCCCccccccccccCCCCcccce--eEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCcceeeeecCCCC
Q 004685          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL--THVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDAS  324 (737)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~  324 (737)
                      .+.+..+..          +       ..+ ...+  .+++|+|+|++|++++. |+.|++|++.+....-..    .++
T Consensus       245 ~~~~~~~~~----------~-------~~~-~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~  302 (343)
T 3lrv_A          245 DVGTLAYPT----------Y-------TIP-EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEE  302 (343)
T ss_dssp             STTCBSSCC----------C-------BC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEE
T ss_pred             CCcceeecc----------c-------ccc-cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCc
Confidence            765443321          0       000 0123  46999999999999999 999999999775432222    334


Q ss_pred             eeeeecc
Q 004685          325 KIMSFTP  331 (737)
Q Consensus       325 ~~~~~~p  331 (737)
                      ..++|.|
T Consensus       303 ~~~~~~~  309 (343)
T 3lrv_A          303 SALCLQS  309 (343)
T ss_dssp             EECCC--
T ss_pred             eeEecCc
Confidence            4555555

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=1.3e-23  Score=213.10  Aligned_cols=228  Identities=11%  Similarity=0.052  Sum_probs=160.1

Q ss_pred             ccccccccccccc-ccccceeecccCC-------------------------ceEEEEEcCC----CCEEEEEeC-----
Q 004685           26 VNHSLQMHSSLVR-RLSQERELEGHQG-------------------------CVNAISWNSK----GSLLISGSD-----   70 (737)
Q Consensus        26 ~~~~~~~~~~~~~-~~~~~~~l~~H~~-------------------------~V~~l~~s~~----g~~lasgs~-----   70 (737)
                      -+..+++|+.... ..+..+++.+|+.                         .|++|+|+|+    ++++++++.     
T Consensus        61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~  140 (356)
T 2w18_A           61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVL  140 (356)
T ss_dssp             ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEE
T ss_pred             ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEE
Confidence            3567889985432 2378888888875                         4556667777    777777653     


Q ss_pred             ---------------CCcEEEEEC-CCCeEEEEEcccCccceEEEEEee-CCCCCEEEEEECCCcEEEEecCCCCCCCCC
Q 004685           71 ---------------DTHINVWSY-SSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLD  133 (737)
Q Consensus        71 ---------------dg~V~vwd~-~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~  133 (737)
                                     |+.|++|++ .+++.+..+ .+|...+..++|+| ++++.+|++++.|++|+|||+.++.     
T Consensus       141 ~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-----  214 (356)
T 2w18_A          141 GLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-----  214 (356)
T ss_dssp             EETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-----
T ss_pred             ecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-----
Confidence                           888888888 447777776 68888888889998 3237899999999999999998743     


Q ss_pred             CCCCCCceeeccCC---CceeEEEEecCCCcEE------------EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEE
Q 004685          134 DNAITPSALYQCHT---RRVKKLAVEVGNPHVV------------WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (737)
Q Consensus       134 ~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~l------------~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~  198 (737)
                           .+..+.+|.   ..+.+++|+| ++.++            ++|+.|++|++||..+++.+           ..+ 
T Consensus       215 -----~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l-----------~v~-  276 (356)
T 2w18_A          215 -----LLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV-----------GVM-  276 (356)
T ss_dssp             -----EEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEE-----------EEE-
T ss_pred             -----EEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE-----------EEE-
Confidence                 256676543   4677889999 55655            56888999999999877532           000 


Q ss_pred             eccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                              .+....+|...+.+..++   +.++++++.|++|+|||+.+++.+.++.                    +|.
T Consensus       277 --------~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~--------------------gH~  325 (356)
T 2w18_A          277 --------LYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLP--------------------PVS  325 (356)
T ss_dssp             --------EECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEEC--------------------CC-
T ss_pred             --------EeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEec--------------------CCC
Confidence                    011122333334444444   4689999999999999999987665542                    243


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 004685          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~  308 (737)
                      ...+..++|+|||++|++|+.|++|+|||+
T Consensus       326 ~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          326 DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            323556899999999999999999999996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=3.7e-23  Score=223.63  Aligned_cols=200  Identities=11%  Similarity=0.079  Sum_probs=143.3

Q ss_pred             CCceEEEEEcCCCC-EEEEEe----CCC----cEEEEEC--CCCeEE--EEEcccCccceEEEEEeeCC-----------
Q 004685           50 QGCVNAISWNSKGS-LLISGS----DDT----HINVWSY--SSRKLL--HSIETGHSANVFCTKFVPET-----------  105 (737)
Q Consensus        50 ~~~V~~l~~s~~g~-~lasgs----~dg----~V~vwd~--~~~~~~--~~~~~~h~~~V~~v~~sp~~-----------  105 (737)
                      ...|...+|.+.|. ++++|+    .||    .|+|||+  .+++.+  ..+ .+|...+..+++.+..           
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSY-KVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEE-EcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            34778888988774 666886    467    8999999  888876  346 6788888887777510           


Q ss_pred             -CCCEEEEEECC------CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC---cEEEE
Q 004685          106 -SDELVVSGAGD------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQH  175 (737)
Q Consensus       106 -~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg---~I~vw  175 (737)
                       .+..++.++.+      +.|++||+...           ....+..|...+.+++|+| +++.|++++.++   .|++|
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-----------~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~  208 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDGY-----------NQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQ  208 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTSC-----------SCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCCC-----------CCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEE
Confidence             02456555544      79999999742           1566778999999999999 567888888775   99999


Q ss_pred             EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEE-EEeCCCc--EEEEECCCCCCcc
Q 004685          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAF--ARLYDRRMLPPLT  252 (737)
Q Consensus       176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-t~s~Dg~--i~iwd~~~~~~~~  252 (737)
                      |+.+++..                       .+   ..+...+.+++|+|++ +.|+ +++.|+.  |++||+++++.. 
T Consensus       209 d~~tg~~~-----------------------~l---~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~~-  260 (415)
T 2hqs_A          209 TLANGAVR-----------------------QV---ASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQIR-  260 (415)
T ss_dssp             ETTTCCEE-----------------------EE---ECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE-
T ss_pred             ECCCCcEE-----------------------Ee---ecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCEE-
Confidence            99877521                       11   1234578899999984 6565 6766655  999999876531 


Q ss_pred             cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CC--eEEEEEcCCC
Q 004685          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE--HVYLMDVNHA  311 (737)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg--~v~iwd~~~~  311 (737)
                      .+                    ..+. ..+.+++|+|+|++|+.++. ++  .|++||+.++
T Consensus       261 ~l--------------------~~~~-~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~  301 (415)
T 2hqs_A          261 QV--------------------TDGR-SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG  301 (415)
T ss_dssp             EC--------------------CCCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             eC--------------------cCCC-CcccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence            11                    1122 25899999999999998887 44  6777777653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=2.5e-22  Score=217.14  Aligned_cols=222  Identities=9%  Similarity=0.034  Sum_probs=160.9

Q ss_pred             cccccccccccccccccc--eeecccCCceEEEEEcC--------------CCCEEEEEeCC------CcEEEEECCCCe
Q 004685           26 VNHSLQMHSSLVRRLSQE--RELEGHQGCVNAISWNS--------------KGSLLISGSDD------THINVWSYSSRK   83 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~--~~l~~H~~~V~~l~~s~--------------~g~~lasgs~d------g~V~vwd~~~~~   83 (737)
                      .+.++++|+....+.+.+  .++.+|...+..+++++              .+..++.++.+      +.|++||+..+ 
T Consensus        91 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-  169 (415)
T 2hqs_A           91 YNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-  169 (415)
T ss_dssp             EEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-
T ss_pred             EEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-
Confidence            445899999511333444  66899999888888775              15666666554      79999999754 


Q ss_pred             EEEEEcccCccceEEEEEeeCCCCCEEEEEECCC---cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC
Q 004685           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  160 (737)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  160 (737)
                      ....+ ..|...+.+++|+|+  ++.|++++.++   .|++||+..+.           ...+..|...+.+++|+|++.
T Consensus       170 ~~~~l-~~~~~~v~~~~~Spd--g~~la~~s~~~~~~~i~~~d~~tg~-----------~~~l~~~~~~~~~~~~spdg~  235 (415)
T 2hqs_A          170 NQFVV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGA-----------VRQVASFPRHNGAPAFSPDGS  235 (415)
T ss_dssp             SCEEE-EEESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCC-----------EEEEECCSSCEEEEEECTTSS
T ss_pred             CCEEE-eCCCCcceeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCc-----------EEEeecCCCcccCEEEcCCCC
Confidence            45556 578899999999999  79999999885   99999998633           344566888999999999553


Q ss_pred             cEEEEEeCCCc--EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC-C
Q 004685          161 HVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-D  237 (737)
Q Consensus       161 ~~l~s~s~Dg~--I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~-D  237 (737)
                      .++++++.|+.  |.+||+.+++.                          .....+...+.+++|+|+ ++.|++++. +
T Consensus       236 ~la~~~~~~g~~~i~~~d~~~~~~--------------------------~~l~~~~~~~~~~~~spd-g~~l~~~s~~~  288 (415)
T 2hqs_A          236 KLAFALSKTGSLNLYVMDLASGQI--------------------------RQVTDGRSNNTEPTWFPD-SQNLAFTSDQA  288 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCE--------------------------EECCCCSSCEEEEEECTT-SSEEEEEECTT
T ss_pred             EEEEEEecCCCceEEEEECCCCCE--------------------------EeCcCCCCcccceEECCC-CCEEEEEECCC
Confidence            34447777665  99999987651                          112234567889999998 577777765 4


Q ss_pred             C--cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---CeEEEEEcCCC
Q 004685          238 A--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA  311 (737)
Q Consensus       238 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---g~v~iwd~~~~  311 (737)
                      +  .|++||+.+++... +                    ..+ ...+.+++|+|+|++|+.++.+   ..|++||+.++
T Consensus       289 g~~~i~~~d~~~~~~~~-l--------------------~~~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          289 GRPQVYKVNINGGAPQR-I--------------------TWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  345 (415)
T ss_dssp             SSCEEEEEETTSSCCEE-C--------------------CCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred             CCcEEEEEECCCCCEEE-E--------------------ecC-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence            5  67777887654211 1                    001 1248899999999999988874   58999998874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=1.3e-21  Score=218.14  Aligned_cols=205  Identities=12%  Similarity=0.114  Sum_probs=148.8

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec--CCCCCCCCCC
Q 004685           57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL--SRFSGRGLDD  134 (737)
Q Consensus        57 ~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~--~~~~~~~~~~  134 (737)
                      +|+|++.++++++.|++|.+||..+++++..+..++.  +.+++|+|+  +.+|++++.|+.|.+||+  .+.       
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spd--g~~l~v~~~d~~V~v~D~~~~t~-------  212 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSAS--GRYLLVIGRDARIDMIDLWAKEP-------  212 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTT--SCEEEEEETTSEEEEEETTSSSC-------
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCC--CCEEEEECCCCeEEEEECcCCCC-------
Confidence            3889999999999999999999999999998843443  899999999  799999999999999999  432       


Q ss_pred             CCCCCceeeccCCCceeEEEEec----CCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685          135 NAITPSALYQCHTRRVKKLAVEV----GNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (737)
Q Consensus       135 ~~~~~~~~~~~h~~~v~~l~~~p----~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (737)
                         +.+..+. +...+..++|+|    ++ +++++++ .+++|.+||..+.+.+           ..+ ...  . ....
T Consensus       213 ---~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~-----------~~i-~~~--g-~~~~  272 (543)
T 1nir_A          213 ---TKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPK-----------QIV-STR--G-MTVD  272 (543)
T ss_dssp             ---EEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEE-----------EEE-ECC--E-ECSS
T ss_pred             ---cEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccc-----------eee-ccc--C-cccC
Confidence               2245555 455689999999    66 5555555 5899999998877632           111 000  0 0000


Q ss_pred             CCCCC-ccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685          210 DPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (737)
Q Consensus       210 ~~~~~-~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s  288 (737)
                      ....| ...+.++.++|+++.++++...++.|.+||+.+.+.+...           .     + .  + ...+..++|+
T Consensus       273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~-----------~-----i-~--~-~~~~~~~~~s  332 (543)
T 1nir_A          273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT-----------S-----I-G--A-APFLHDGGWD  332 (543)
T ss_dssp             SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE-----------E-----E-E--C-CSSCCCEEEC
T ss_pred             ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE-----------E-----e-c--c-CcCccCceEC
Confidence            00001 2367899999987778888889999999999876532210           0     0 0  0 1136779999


Q ss_pred             CCCCEEEEEeC-CCeEEEEEcCCCC
Q 004685          289 PNGEEVLLSYS-GEHVYLMDVNHAG  312 (737)
Q Consensus       289 p~g~~l~~g~~-dg~v~iwd~~~~~  312 (737)
                      |+|++|++++. +++|.+||+.+++
T Consensus       333 pdg~~l~va~~~~~~v~v~D~~tg~  357 (543)
T 1nir_A          333 SSHRYFMTAANNSNKVAVIDSKDRR  357 (543)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCCCEEEEEecCCCeEEEEECCCCe
Confidence            99998877664 8999999999853

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=2.6e-21  Score=234.17  Aligned_cols=237  Identities=10%  Similarity=0.046  Sum_probs=153.6

Q ss_pred             cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEEEEcccCccce-----
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANV-----   96 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d------g~V~vwd~~~~~~~~~~~~~h~~~V-----   96 (737)
                      +.|.+|+.  ... ....+.+|...|.+++|||||++||.++.+      ..|++||+.+++ ...+ ..|...+     
T Consensus        33 ~~l~~~~~--~gg-~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~l-t~~~~~~~~~~~  107 (1045)
T 1k32_A           33 DDLWEHDL--KSG-STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRI-TYFSGKSTGRRM  107 (1045)
T ss_dssp             TEEEEEET--TTC-CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEEC-CCCCEEEETTEE
T ss_pred             CcEEEEEC--CCC-cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEc-ccCCCccccccc
Confidence            35666663  222 356778899999999999999999987643      479999998887 4556 6788888     


Q ss_pred             --EEEEEeeCCCCCEEEEEECC------CcEEEEecCCCCCCCCCCCC----------------------C---------
Q 004685           97 --FCTKFVPETSDELVVSGAGD------AEVRLFNLSRFSGRGLDDNA----------------------I---------  137 (737)
Q Consensus        97 --~~v~~sp~~~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~----------------------~---------  137 (737)
                        .+++|+|+  +.++++++.+      ..|.+|++............                      +         
T Consensus       108 ~~~~~~~SpD--g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~  185 (1045)
T 1k32_A          108 FTDVAGFDPD--GNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRG  185 (1045)
T ss_dssp             CSEEEEECTT--CCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCC
T ss_pred             ccccccCCCC--CEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcC
Confidence              99999999  5777777754      35777776543211100000                      0         


Q ss_pred             --------CCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685          138 --------TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (737)
Q Consensus       138 --------~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (737)
                              .....+.+|...+.++.|++ + .++++++.|+.+.+|.+......                     ...+.
T Consensus       186 ~lw~~~~~~~~~~l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~---------------------~~~l~  242 (1045)
T 1k32_A          186 KIWIEVNSGAFKKIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKD---------------------LRKHT  242 (1045)
T ss_dssp             EEEEEEETTEEEEEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCS---------------------CEECC
T ss_pred             CEEEECCCCCeEECcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCc---------------------ceEec
Confidence                    01123356788889999988 4 67778888899999987642210                     01111


Q ss_pred             CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc-
Q 004685          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-  288 (737)
Q Consensus       210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s-  288 (737)
                         .+ ..+...+|+|+ ++.|+.+ .++.|++||+... .+..+....... ..      ..  ..+ ...+.+++|+ 
T Consensus       243 ---~~-~~~~~~~~SpD-G~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~-~~------~~--~~~-~~~v~~~~~S~  305 (1045)
T 1k32_A          243 ---SF-TDYYPRHLNTD-GRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLES-PE------DR--IIS-IPSKFAEDFSP  305 (1045)
T ss_dssp             ---CC-CSSCEEEEEES-SSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCB-CC------SE--EEE-CGGGGEEEEEE
T ss_pred             ---CC-CCcceeeEcCC-CCEEEEE-eCCEEEEecCCce-EeeeeccCcccc-cc------cc--ccc-ccccceeeecC
Confidence               11 13456799997 5677776 4899999998432 222221100000 00      00  001 1248899999 


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          289 PNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       289 p~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      |+|++|+.++ ++.|++|++..+.
T Consensus       306 pdG~~la~~~-~~~i~~~~~~~~~  328 (1045)
T 1k32_A          306 LDGDLIAFVS-RGQAFIQDVSGTY  328 (1045)
T ss_dssp             CGGGCEEEEE-TTEEEEECTTSSB
T ss_pred             CCCCEEEEEE-cCEEEEEcCCCCc
Confidence            9999999888 7899999988754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=3e-20  Score=216.99  Aligned_cols=219  Identities=9%  Similarity=0.030  Sum_probs=148.0

Q ss_pred             CCceEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCeEEEEEcccCc------------------------cceEEE
Q 004685           50 QGCVNAISWNSKGSLLISGSD-DT-----HINVWSYSSRKLLHSIETGHS------------------------ANVFCT   99 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~-dg-----~V~vwd~~~~~~~~~~~~~h~------------------------~~V~~v   99 (737)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+ ..+.                        ..|.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence            457999999999999999998 88     8999999998876665 3333                        238899


Q ss_pred             EEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (737)
Q Consensus       100 ~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~  179 (737)
                      +|+|+  |++|++++. +.|++||+......        ....+..|...+.+++|+| ++++|+.++ ++.|.+||+.+
T Consensus       115 ~~SpD--g~~l~~~~~-~~i~~~d~~~~~~~--------~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          115 QWSPD--AQRLLFPLG-GELYLYDLKQEGKA--------AVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             EECTT--SSEEEEEET-TEEEEEESSSCSTT--------SCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTT
T ss_pred             EECCC--CCEEEEEeC-CcEEEEECCCCCcc--------eEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCC
Confidence            99999  799998886 99999999864100        1344566778899999999 567777776 46899999987


Q ss_pred             CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC---------------------
Q 004685          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---------------------  238 (737)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg---------------------  238 (737)
                      ++......... .  .+..    +....+..  .....+.+++|+|+ ++.|++++.|+                     
T Consensus       182 g~~~~~~~~~~-~--~~~~----g~~~~v~~--~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~  251 (741)
T 2ecf_A          182 GRQMQLTADGS-T--TIGN----GIAEFVAD--EEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQ  251 (741)
T ss_dssp             TEEEECCCCCC-S--SEEE----SCCCHHHH--HHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred             CCEEEeccCCc-c--ceec----cccceeee--eccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence            65221000000 0  0000    00000000  00112477999998 57888877665                     


Q ss_pred             ------------cEEEEECCC-CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-----C
Q 004685          239 ------------FARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----G  300 (737)
Q Consensus       239 ------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-----d  300 (737)
                                  .|++||+.+ ++.......                  ..+. ..+..++| |||++|+.++.     +
T Consensus       252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~------------------~~~~-~~~~~~~~-pDg~~l~~~~~~~~~~~  311 (741)
T 2ecf_A          252 RYPAAGDANVQVKLGVISPAEQAQTQWIDLG------------------KEQD-IYLARVNW-RDPQHLSFQRQSRDQKK  311 (741)
T ss_dssp             ECCBTTSCCCEEEEEEECSSTTCCCEEECCC------------------SCSS-EEEEEEEE-EETTEEEEEEEETTSSE
T ss_pred             ecCCCCCCCCeeEEEEEECCCCCceEEecCC------------------CCcc-eEEEEEEe-CCCCEEEEEEecccCCe
Confidence                        788889877 653221100                  0122 25899999 99999998764     4


Q ss_pred             CeEEEEEcCCCC
Q 004685          301 EHVYLMDVNHAG  312 (737)
Q Consensus       301 g~v~iwd~~~~~  312 (737)
                      ..|++||+.+++
T Consensus       312 ~~i~~~d~~~g~  323 (741)
T 2ecf_A          312 LDLVEVTLASNQ  323 (741)
T ss_dssp             EEEEEEETTTCC
T ss_pred             EEEEEEECCCCc
Confidence            679999988753

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=3.6e-19  Score=186.66  Aligned_cols=196  Identities=14%  Similarity=0.181  Sum_probs=126.9

Q ss_pred             EEEEEeCCCcEEEEECC-CC--eEEEEEcccCccceEEEEEeeCCCCCEEEEEECC-CcEEEEecCCCCCCCCCCCCCCC
Q 004685           64 LLISGSDDTHINVWSYS-SR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGRGLDDNAITP  139 (737)
Q Consensus        64 ~lasgs~dg~V~vwd~~-~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~~~~~  139 (737)
                      ++++++.|+.|++||+. ++  +.+..+  .+...+.+++|+|+  +.+|++++.+ +.|.+|++....+.      ...
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spd--g~~l~~~~~~~~~v~~~~~~~~~~~------~~~   76 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGA------LTF   76 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCC------EEE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCC--CCEEEEeecCCCeEEEEEecCCCCc------eee
Confidence            44555789999999995 33  333333  47778999999999  7888888876 99999999732221      112


Q ss_pred             ceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceE
Q 004685          140 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  219 (737)
Q Consensus       140 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  219 (737)
                      +..+..+. .+..++|+|++..+++++..++.|.+||+..+...           ..+           .... ....+.
T Consensus        77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-----------~~~-----------~~~~-~~~~~~  132 (343)
T 1ri6_A           77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-----------GVV-----------DVVE-GLDGCH  132 (343)
T ss_dssp             EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-----------EEE-----------EEEC-CCTTBC
T ss_pred             ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc-----------ccc-----------cccc-CCCCce
Confidence            33344333 78999999955334445555889999999522100           000           0001 123477


Q ss_pred             EEEEecCCCcEEEEEe-CCCcEEEEECCC-CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE
Q 004685          220 SCDISSTRPHLLLVGG-SDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  297 (737)
Q Consensus       220 ~i~~sp~~~~~l~t~s-~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g  297 (737)
                      +++|+|++ +.+++++ .++.|++||+.+ ++.....              ....  ..+.+..+..++|+|+|++++++
T Consensus       133 ~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~~pdg~~l~~~  195 (343)
T 1ri6_A          133 SANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQD--------------PAEV--TTVEGAGPRHMVFHPNEQYAYCV  195 (343)
T ss_dssp             CCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEE--------------EEEE--ECSTTCCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeec--------------cccc--ccCCCCCcceEEECCCCCEEEEE
Confidence            89999974 6666665 899999999986 3321100              0000  00111247889999999988766


Q ss_pred             e-CCCeEEEEEcCC
Q 004685          298 Y-SGEHVYLMDVNH  310 (737)
Q Consensus       298 ~-~dg~v~iwd~~~  310 (737)
                      + .++.|.+|++..
T Consensus       196 ~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          196 NELNSSVDVWELKD  209 (343)
T ss_dssp             ETTTTEEEEEESSC
T ss_pred             eCCCCEEEEEEecC
Confidence            6 689999999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.84  E-value=1.9e-19  Score=217.89  Aligned_cols=249  Identities=10%  Similarity=-0.002  Sum_probs=162.9

Q ss_pred             cccccccccccccccceeecccCCce-------EEEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEE--------
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCV-------NAISWNSKGSLLISGSDD------THINVWSYSSRKLLH--------   86 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V-------~~l~~s~~g~~lasgs~d------g~V~vwd~~~~~~~~--------   86 (737)
                      ..|.+|+..  ..+ ...|.+|...+       .+++|+|||+++++++.+      ..|.+|++.+++...        
T Consensus        80 ~~i~~~d~~--~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~  156 (1045)
T 1k32_A           80 ADLYFYNGE--NGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATH  156 (1045)
T ss_dssp             EEEEEEETT--TTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSE
T ss_pred             CeEEEEECC--CCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcce
Confidence            456677633  322 56788898888       999999999988888754      458888876654321        


Q ss_pred             -----------------------------------------EEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685           87 -----------------------------------------SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        87 -----------------------------------------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~  125 (737)
                                                               .+ .+|...+.++.|+++   .++++++.|+.+.||.+.
T Consensus       157 ~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l-~~~~~~v~~~~~s~d---~l~~~~~~dg~~~l~~~~  232 (1045)
T 1k32_A          157 ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTD  232 (1045)
T ss_dssp             EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEE
T ss_pred             eeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC-cCCCCcccceEEeCC---EEEEEEeccCceEEEEEe
Confidence                                                     12 346677788888876   577788888999999876


Q ss_pred             CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                      .....         ...+..|. .+...+|+| +++.|+.+ .++.|.+||+.... +              ..+.....
T Consensus       233 ~~g~~---------~~~l~~~~-~~~~~~~Sp-DG~~la~~-~~~~i~~~d~~~~~-l--------------~~l~~~~~  285 (1045)
T 1k32_A          233 LDGKD---------LRKHTSFT-DYYPRHLNT-DGRRILFS-KGGSIYIFNPDTEK-I--------------EKIEIGDL  285 (1045)
T ss_dssp             TTSCS---------CEECCCCC-SSCEEEEEE-SSSCEEEE-ETTEEEEECTTTCC-E--------------EECCCCCC
T ss_pred             CCCCc---------ceEecCCC-CcceeeEcC-CCCEEEEE-eCCEEEEecCCceE-e--------------eeeccCcc
Confidence            42211         33444444 356789999 45666665 48999999983322 1              01100000


Q ss_pred             eeccCCCCCccceEEEEEe-cCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685          206 RSLADPPKQTLSLKSCDIS-STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~s-p~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (737)
                      ........+...+.+++|+ |+ ++.|++++ ++.|++|++..+.....                     ..+....+..
T Consensus       286 ~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~  342 (1045)
T 1k32_A          286 ESPEDRIISIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVLKV---------------------PEPLRIRYVR  342 (1045)
T ss_dssp             CBCCSEEEECGGGGEEEEEECG-GGCEEEEE-TTEEEEECTTSSBEEEC---------------------SCCSCEEEEE
T ss_pred             cccccccccccccceeeecCCC-CCEEEEEE-cCEEEEEcCCCCceEEc---------------------cCCCcceEEe
Confidence            0000000133468899999 97 57788777 78999999876542211                     1122224889


Q ss_pred             EEEcCCCCEEEEEeCCCeEE-EEEcCCCCcceeeeecCCCCeeeeeccCCCC
Q 004685          285 VTFSPNGEEVLLSYSGEHVY-LMDVNHAGGRAMRYTVGDASKIMSFTPTLNG  335 (737)
Q Consensus       285 v~~sp~g~~l~~g~~dg~v~-iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~  335 (737)
                      ++|+ +|+.|+.++.++.+. +|++..+...... .+...+..++|+|+.+.
T Consensus       343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~  392 (1045)
T 1k32_A          343 RGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKF  392 (1045)
T ss_dssp             ECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSE
T ss_pred             eeEc-CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCE
Confidence            9999 999999999988899 9999876543333 55566777888887543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.84  E-value=1.5e-18  Score=181.28  Aligned_cols=198  Identities=12%  Similarity=0.125  Sum_probs=133.4

Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCC
Q 004685           57 SWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDD  134 (737)
Q Consensus        57 ~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~  134 (737)
                      .|.+++. .+++++.++.|.+||..+++.+..+ ..+...+ +++|+|+  ++++++++. ++.|.+||+.....     
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~-~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~-----   74 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-TLGYDFV-DTAITSD--CSNVVVTSDFCQTLVQIETQLEPP-----   74 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-ECCCCEE-EEEECSS--SCEEEEEESTTCEEEEEECSSSSC-----
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-EccCCcc-eEEEcCC--CCEEEEEeCCCCeEEEEECCCCce-----
Confidence            4555554 5778888999999999999988877 4555666 9999999  676655554 89999999986321     


Q ss_pred             CCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC---cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004685          135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (737)
Q Consensus       135 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg---~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (737)
                          ....+..+..+..+++|+| ++++++++..++   .|.+||+.+++..           ..           +.  
T Consensus        75 ----~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~-----------~~-----------~~--  125 (331)
T 3u4y_A           75 ----KVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFI-----------ST-----------IP--  125 (331)
T ss_dssp             ----EEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEE-----------EE-----------EE--
T ss_pred             ----eEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeE-----------EE-----------EE--
Confidence                0344555556555599999 557776555443   8999999876522           00           00  


Q ss_pred             CCCccceEEEEEecCCCcEEEEEeCCCc-EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004685          212 PKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (737)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~  290 (737)
                        ......+++|+|++..++++...++. |.+|++.....+....             ...+    ........++|+|+
T Consensus       126 --~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-------------~~~~----~~~~~~~~~~~spd  186 (331)
T 3u4y_A          126 --IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-------------QEFI----SGGTRPFNITFTPD  186 (331)
T ss_dssp             --CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-------------EEEE----CSSSSEEEEEECTT
T ss_pred             --CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-------------Cccc----cCCCCccceEECCC
Confidence              12345899999985446666677788 9999998543221100             0000    01113788999999


Q ss_pred             CCEEEEEe-CCCeEEEEEcCCC
Q 004685          291 GEEVLLSY-SGEHVYLMDVNHA  311 (737)
Q Consensus       291 g~~l~~g~-~dg~v~iwd~~~~  311 (737)
                      |+++++++ .++.|++||+.++
T Consensus       187 g~~l~v~~~~~~~v~v~d~~~~  208 (331)
T 3u4y_A          187 GNFAFVANLIGNSIGILETQNP  208 (331)
T ss_dssp             SSEEEEEETTTTEEEEEECSST
T ss_pred             CCEEEEEeCCCCeEEEEECCCC
Confidence            99776666 5899999998874

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=2.4e-19  Score=187.50  Aligned_cols=175  Identities=6%  Similarity=-0.045  Sum_probs=118.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEcccCcc-ceEEEEEeeCCCCCE-EEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDEL-VVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (737)
Q Consensus        63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (737)
                      ++|++++.++.|.+||+.+++.+..+..++.. .+.+++|+|+  +.. ++++..++.|.+||+.....          +
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~v~~~~~~~v~~~d~~~~~~----------~   69 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGET----------L   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTCCE----------E
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCC--CCEEEEEeCCCCeEEEEECCCCCe----------E
Confidence            47899999999999999999988877323322 4889999999  555 46666789999999976321          2


Q ss_pred             eeec-cC----CCceeEEEEecCCCcEEEEEe------------CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685          141 ALYQ-CH----TRRVKKLAVEVGNPHVVWSAS------------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (737)
Q Consensus       141 ~~~~-~h----~~~v~~l~~~p~~~~~l~s~s------------~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (737)
                      ..+. .+    ...+.+++|+| +++++++++            .++.|.+||+.+++..              .     
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--------------~-----  129 (337)
T 1pby_B           70 GRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--------------K-----  129 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--------------E-----
T ss_pred             eeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEE--------------E-----
Confidence            2222 11    22577899999 556666665            5799999999876421              0     


Q ss_pred             ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (737)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (737)
                         .+.    ....+.+++|+|+ +++++++  ++.|++||+.+++.+..+...                   ..   ..
T Consensus       130 ---~~~----~~~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~~~~~~~~~~~~-------------------~~---~~  177 (337)
T 1pby_B          130 ---AFE----APRQITMLAWARD-GSKLYGL--GRDLHVMDPEAGTLVEDKPIQ-------------------SW---EA  177 (337)
T ss_dssp             ---EEE----CCSSCCCEEECTT-SSCEEEE--SSSEEEEETTTTEEEEEECST-------------------TT---TT
T ss_pred             ---EEe----CCCCcceeEECCC-CCEEEEe--CCeEEEEECCCCcEeeeeecc-------------------cc---CC
Confidence               010    0124667889997 4666666  689999999987654333211                   00   01


Q ss_pred             EEEEcCCCCEEEEEeCCC
Q 004685          284 HVTFSPNGEEVLLSYSGE  301 (737)
Q Consensus       284 ~v~~sp~g~~l~~g~~dg  301 (737)
                      .+.|+|+|.+++.++..+
T Consensus       178 ~~~~s~dg~~l~~~~~~~  195 (337)
T 1pby_B          178 ETYAQPDVLAVWNQHESS  195 (337)
T ss_dssp             TTBCCCBCCCCCCCCTTT
T ss_pred             CceeCCCccEEeeeccCC
Confidence            126899998877666543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=4.2e-19  Score=181.50  Aligned_cols=182  Identities=13%  Similarity=0.090  Sum_probs=124.4

Q ss_pred             EEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC-CCCCCCCCCCCCCceeecc
Q 004685           67 SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQC  145 (737)
Q Consensus        67 sgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~  145 (737)
                      .++.|+.|++||+.+++....  ..|...|.+++|+|+  +.+|++++ ++.|++||+.. ...          ......
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~--~~~~~~v~~~~~spd--g~~l~~~~-~~~i~~~d~~~~~~~----------~~~~~~   81 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVV--WQTPELFEAPNWSPD--GKYLLLNS-EGLLYRLSLAGDPSP----------EKVDTG   81 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEE--EEESSCCEEEEECTT--SSEEEEEE-TTEEEEEESSSCCSC----------EECCCT
T ss_pred             CCCcceeEEEEeCCCCceeee--ccCCcceEeeEECCC--CCEEEEEc-CCeEEEEeCCCCCCc----------eEeccc
Confidence            456789999999999887644  358899999999999  78888887 78999999986 332          223333


Q ss_pred             C-CCceeEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEE
Q 004685          146 H-TRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD  222 (737)
Q Consensus       146 h-~~~v~~l~~~p~~~~~l~s~s--~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  222 (737)
                      + ...+.+++|+| ++++|++++  .++.+.+|.+......                     ...+.    ....+..++
T Consensus        82 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~---------------------~~~~~----~~~~~~~~~  135 (297)
T 2ojh_A           82 FATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT---------------------PRLMT----KNLPSYWHG  135 (297)
T ss_dssp             TCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC---------------------CEECC----SSSSEEEEE
T ss_pred             cccccccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc---------------------eEEee----cCCCccceE
Confidence            4 46788999999 557787877  3455666655432110                     00111    112378889


Q ss_pred             EecCCCcEEEEEeCCCcEEEEECCCCC-CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-C
Q 004685          223 ISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-G  300 (737)
Q Consensus       223 ~sp~~~~~l~t~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-d  300 (737)
                      |+|++..++++++.++.+++|+++... ....+                    ..+. ..+.+++|+|+|++|+.++. +
T Consensus       136 ~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~--------------------~~~~-~~~~~~~~s~dg~~l~~~~~~~  194 (297)
T 2ojh_A          136 WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL--------------------THGE-GRNDGPDYSPDGRWIYFNSSRT  194 (297)
T ss_dssp             ECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC--------------------CCSS-SCEEEEEECTTSSEEEEEECTT
T ss_pred             ECCCCCEEEEEECCCCceEEEEEECCCCcceEc--------------------ccCC-CccccceECCCCCEEEEEecCC
Confidence            999854344478889999999865321 11111                    1111 25899999999998887774 8


Q ss_pred             CeEEEEEcCC
Q 004685          301 EHVYLMDVNH  310 (737)
Q Consensus       301 g~v~iwd~~~  310 (737)
                      +.+.+|++..
T Consensus       195 ~~~~i~~~~~  204 (297)
T 2ojh_A          195 GQMQIWRVRV  204 (297)
T ss_dssp             SSCEEEEEET
T ss_pred             CCccEEEECC
Confidence            8999998763

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=4.2e-19  Score=206.01  Aligned_cols=201  Identities=12%  Similarity=-0.010  Sum_probs=137.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC----
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR----  126 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~----  126 (737)
                      ..|.+++|+|| ..++.+. ++.|++||+.+++.....  .+...+.+++|+|+  |+.|+++ .|+.|++|++..    
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~Spd--G~~la~~-~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF--DTNEETASLDFSPV--GDRVAYV-RNHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE--CCTTCCTTCEECTT--SSEEEEE-ETTEEEEEECBCTTSC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc--CCcccccCCcCCCC--CCEEEEE-ECCeEEEEecCccccc
Confidence            56999999999 6555553 599999999988765443  46778999999999  7888885 689999999986    


Q ss_pred             -CCCCCCCCCCCCCceeeccCC--------------CceeEEEEecCCCcEEEEEeC-----------------------
Q 004685          127 -FSGRGLDDNAITPSALYQCHT--------------RRVKKLAVEVGNPHVVWSASE-----------------------  168 (737)
Q Consensus       127 -~~~~~~~~~~~~~~~~~~~h~--------------~~v~~l~~~p~~~~~l~s~s~-----------------------  168 (737)
                       +...          .....+.              ..+.++.|+| ++++|++++.                       
T Consensus       155 ~g~~~----------~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  223 (706)
T 2z3z_A          155 MSRAI----------AVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL  223 (706)
T ss_dssp             CCCCE----------ESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred             CCCcE----------EeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence             3321          1111122              2358899999 5577777762                       


Q ss_pred             ----------CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC
Q 004685          169 ----------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (737)
Q Consensus       169 ----------Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg  238 (737)
                                +..|.+||+.+++                       ...+.....+...+.+++|+|+ ++.|++++.++
T Consensus       224 ~y~~~g~~~~~~~l~~~d~~~~~-----------------------~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~  279 (706)
T 2z3z_A          224 YYPMAGTPSHHVTVGIYHLATGK-----------------------TVYLQTGEPKEKFLTNLSWSPD-ENILYVAEVNR  279 (706)
T ss_dssp             CCCBTTSCCCEEEEEEEETTTTE-----------------------EEECCCCSCTTCEEEEEEECTT-SSEEEEEEECT
T ss_pred             eCCCCCCCCCeeEEEEEECCCCc-----------------------eEeeccCCCCceeEeeEEEECC-CCEEEEEEeCC
Confidence                      3456666665443                       2223322345567899999997 57888877665


Q ss_pred             -----cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC--CCCEEEEEeCCCeEEEEEcC
Q 004685          239 -----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       239 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp--~g~~l~~g~~dg~v~iwd~~  309 (737)
                           .|++||+.+++....+...                ........+..++|+|  +|++++++..|+.+++|.+.
T Consensus       280 ~~~~~~v~~~d~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          280 AQNECKVNAYDAETGRFVRTLFVE----------------TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             TSCEEEEEEEETTTCCEEEEEEEE----------------ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCeeEEEEEECCCCceeeEEEEc----------------cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence                 8999999887322221100                0000000246689999  99999999889999999876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=2.3e-19  Score=208.89  Aligned_cols=224  Identities=8%  Similarity=-0.005  Sum_probs=144.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCcc---ceEEEEEeeCCCCCEEEEEECC---------CcE
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAGD---------AEV  119 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~---~V~~v~~sp~~~~~~l~sgs~d---------g~I  119 (737)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+ ..|..   .|.+++|+|+  |++|++++.+         +.|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~SpD--g~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECCC--CCEEEEEecCccceeecceeeE
Confidence            4678899999998877 78999999999999877766 55654   4999999999  7999998874         778


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      .+||+..+...        .+.....|...+..++|+| +++.|+.++. +.|++||+.+++...........  .++..
T Consensus        94 ~~~d~~~~~~~--------~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~--~~~~g  161 (723)
T 1xfd_A           94 VLSKIPHGDPQ--------SLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG--VIYNG  161 (723)
T ss_dssp             EEEESSSCCCE--------ECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTT--TEEEE
T ss_pred             EEEECCCCceE--------eccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCC--ceECc
Confidence            89999864321        1223334556688999999 5577777765 79999999876532000000000  00000


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC----------------------------------cEEEEEC
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYDR  245 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg----------------------------------~i~iwd~  245 (737)
                      ..    ..+.. ......+.+++|+|+ ++.|++++.|+                                  .|++||+
T Consensus       162 ~~----~~v~~-ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~  235 (723)
T 1xfd_A          162 LS----DWLYE-EEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (723)
T ss_dssp             EC----CHHHH-HTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             cc----ceeEE-EEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence            00    00000 000123478999998 57888876543                                  6888888


Q ss_pred             CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC----CCeEEEEEcCCCC
Q 004685          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAG  312 (737)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~----dg~v~iwd~~~~~  312 (737)
                      .+++....+...            ...  . .....+..++|+|||++|++...    +..|++||+.+++
T Consensus       236 ~~~~~~~~l~~~------------~~~--~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~  291 (723)
T 1xfd_A          236 NGPTHDLEMMPP------------DDP--R-MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (723)
T ss_dssp             SSSCCCEECCCC------------CCG--G-GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             CCCceeEEeeCC------------ccC--C-CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence            766532222100            000  0 01225899999999998877654    3578999987753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.82  E-value=7.8e-19  Score=179.48  Aligned_cols=257  Identities=12%  Similarity=0.076  Sum_probs=177.7

Q ss_pred             ccCCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEEcccC-ccce
Q 004685           19 HTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGH-SANV   96 (737)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~-~~~~~~~~~~h-~~~V   96 (737)
                      ....+.+.+++|.+|+...  .+. ..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++..... ..+ ...+
T Consensus        13 ~~~~~~~~~~~i~~~d~~~--~~~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~~~   87 (297)
T 2ojh_A           13 STGPGGSMRSSIEIFNIRT--RKM-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-TGFATICN   87 (297)
T ss_dssp             -----CCCCEEEEEEETTT--TEE-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-CTTCCCBC
T ss_pred             eecCCCCcceeEEEEeCCC--Cce-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-cccccccc
Confidence            3445567889999999443  333 35566899999999999999999987 78999999998 7766555 444 4788


Q ss_pred             EEEEEeeCCCCCEEEEEE--CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004685           97 FCTKFVPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ  174 (737)
Q Consensus        97 ~~v~~sp~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~v  174 (737)
                      .+++|+|+  +.+|++++  .++.+.||.+......         ...+..+ ..+..++|+|++..++++++.++.+.+
T Consensus        88 ~~~~~spd--g~~l~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l  155 (297)
T 2ojh_A           88 NDHGISPD--GALYAISDKVEFGKSAIYLLPSTGGT---------PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDI  155 (297)
T ss_dssp             SCCEECTT--SSEEEEEECTTTSSCEEEEEETTCCC---------CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEE
T ss_pred             cceEECCC--CCEEEEEEeCCCCcceEEEEECCCCc---------eEEeecC-CCccceEECCCCCEEEEEECCCCceEE
Confidence            99999999  79999998  4456666666432221         2333333 348899999965445558889999999


Q ss_pred             EEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCcEEEEECC-CCCCcc
Q 004685          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRR-MLPPLT  252 (737)
Q Consensus       175 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~i~iwd~~-~~~~~~  252 (737)
                      |++......                        ......+...+.+++|+|++ +.|++++ .++.+++|++. ....+.
T Consensus       156 ~~~~~~~~~------------------------~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~~  210 (297)
T 2ojh_A          156 YSMDIDSGV------------------------ETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSVE  210 (297)
T ss_dssp             EEEETTTCC------------------------EEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred             EEEECCCCc------------------------ceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCCcE
Confidence            997543210                        11112344678999999984 6666554 68999999986 222222


Q ss_pred             cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC-----------CeEEEEEcCCCCcceeee--e
Q 004685          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----------EHVYLMDVNHAGGRAMRY--T  319 (737)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d-----------g~v~iwd~~~~~~~~~~~--~  319 (737)
                      .+                    ..+. ..+..++|+|+|++|++++.+           +.|++||+.+++......  .
T Consensus       211 ~~--------------------~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  269 (297)
T 2ojh_A          211 RI--------------------TDSA-YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFG  269 (297)
T ss_dssp             EC--------------------CCCS-EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEE
T ss_pred             EE--------------------ecCC-cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCC
Confidence            11                    1111 258899999999999988875           569999999876543333  5


Q ss_pred             cCCCCeeeeeccCCCCccC
Q 004685          320 VGDASKIMSFTPTLNGLEL  338 (737)
Q Consensus       320 ~~~~~~~~~~~p~~~~~~~  338 (737)
                      +...+..++|+|+.+.+..
T Consensus       270 ~~~~~~~~~~spdg~~l~~  288 (297)
T 2ojh_A          270 GQGTMNSPNWSPDGDEFAY  288 (297)
T ss_dssp             STTTSCSCCBCTTSSEEEE
T ss_pred             CCcccccceECCCCCEEEE
Confidence            5667888899998765544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.82  E-value=9.1e-18  Score=176.81  Aligned_cols=206  Identities=9%  Similarity=0.054  Sum_probs=146.2

Q ss_pred             cCCceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCC-EEEEEECCCcEE
Q 004685           49 HQGCVNAISWNSKGSLLISGSD-------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVR  120 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~-------dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~  120 (737)
                      ....+..++|+|++++|++++.       ++.|.+||..+++.+..+.  ....+.+++|+|+  +. +++++..++.|.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~d--g~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINNT--TQTLWFGNTVNSAVT  114 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEETT--TTEEEEEETTTTEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECCC--CCEEEEEecCCCEEE
Confidence            3457889999999998887774       5689999999999888873  3345788999999  56 455566689999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCC---------ceeEEEEecCCCcEEEEE-eCCCcEEEEEcCCCCCCCCCCCCC
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSH  190 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~p~~~~~l~s~-s~Dg~I~vwdl~~~~~~~~~~~~~  190 (737)
                      +||......          ...+..+..         .+.+++|+|++..+++++ +.++.|.+||+.+++..       
T Consensus       115 ~~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~-------  177 (353)
T 3vgz_A          115 AIDAKTGEV----------KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK-------  177 (353)
T ss_dssp             EEETTTCCE----------EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE-------
T ss_pred             EEeCCCCee----------EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE-------
Confidence            999986432          233332221         268899999554444444 35789999999876522       


Q ss_pred             CccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccc
Q 004685          191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  270 (737)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (737)
                             .           ..+.+...+.+++|+|+ ++.+++++.++.|.+||+.+++.+..+....            
T Consensus       178 -------~-----------~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~------------  226 (353)
T 3vgz_A          178 -------T-----------AIQNTGKMSTGLALDSE-GKRLYTTNADGELITIDTADNKILSRKKLLD------------  226 (353)
T ss_dssp             -------E-----------EECCCCTTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEECCC------------
T ss_pred             -------E-----------EecCCCCccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEcCC------------
Confidence                   0           01111234677899997 5788888889999999999876554432110            


Q ss_pred             cccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCC
Q 004685          271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA  311 (737)
Q Consensus       271 ~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~  311 (737)
                          .++. ..+..++|+|+|+++++++. ++.|.+||+.++
T Consensus       227 ----~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          227 ----DGKE-HFFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             ----SSSC-CCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             ----CCCC-cccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence                1111 14788999999998888776 589999998774

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.82  E-value=5.7e-19  Score=206.11  Aligned_cols=198  Identities=11%  Similarity=0.036  Sum_probs=137.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      .|.+++|||||++|++++. +.|++||+.++.  ....+ ..|...+.+++|+|+  |++|+.++ ++.|++||+.....
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPD--G~~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPK--GGFVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTT--SSEEEEEE-TTEEEEEETTTTEE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCCC--CCEEEEEe-CCcEEEEecCCCCE
Confidence            3889999999999999987 899999999872  33445 567888999999999  79998887 56899999986322


Q ss_pred             CCCCCCCCCCceeeccCCC----------------ceeEEEEecCCCcEEEEEeCCC-----------------------
Q 004685          130 RGLDDNAITPSALYQCHTR----------------RVKKLAVEVGNPHVVWSASEDG-----------------------  170 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~----------------~v~~l~~~p~~~~~l~s~s~Dg-----------------------  170 (737)
                                ......+..                .+.+++|+| +++.|++++.|+                       
T Consensus       185 ----------~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~  253 (741)
T 2ecf_A          185 ----------MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY  253 (741)
T ss_dssp             ----------EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred             ----------EEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence                      111111221                247899999 556666766554                       


Q ss_pred             ----------cEEEEEcCC-CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC---
Q 004685          171 ----------TLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS---  236 (737)
Q Consensus       171 ----------~I~vwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~---  236 (737)
                                .|.+||+.+ ++                       ...+.....+...+..++| |+ ++.|++++.   
T Consensus       254 ~~~g~~~~~~~l~~~d~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~-pD-g~~l~~~~~~~~  308 (741)
T 2ecf_A          254 PAAGDANVQVKLGVISPAEQAQ-----------------------TQWIDLGKEQDIYLARVNW-RD-PQHLSFQRQSRD  308 (741)
T ss_dssp             CBTTSCCCEEEEEEECSSTTCC-----------------------CEEECCCSCSSEEEEEEEE-EE-TTEEEEEEEETT
T ss_pred             CCCCCCCCeeEEEEEECCCCCc-----------------------eEEecCCCCcceEEEEEEe-CC-CCEEEEEEeccc
Confidence                      455555554 33                       2222222245678899999 97 567776543   


Q ss_pred             --CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc---ceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          237 --DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL---HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       237 --Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                        +..|++||+.+++....+..                    +...   .+..++|+|||+++++++.||.+.+|.+..
T Consensus       309 ~~~~~i~~~d~~~g~~~~~~~~--------------------~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~  367 (741)
T 2ecf_A          309 QKKLDLVEVTLASNQQRVLAHE--------------------TSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDS  367 (741)
T ss_dssp             SSEEEEEEEETTTCCEEEEEEE--------------------ECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred             CCeEEEEEEECCCCceEEEEEc--------------------CCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence              57899999988764322211                    1000   245789999999888888899888887653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.81  E-value=8.6e-18  Score=176.05  Aligned_cols=241  Identities=7%  Similarity=0.072  Sum_probs=153.0

Q ss_pred             CCCcccccccccccc-cccccceeecccCCceEEEEEcCCCCEEEEEeCC-CcEEEEECC--CCe--EEEEEcccCccce
Q 004685           23 RPDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGSDD-THINVWSYS--SRK--LLHSIETGHSANV   96 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~-~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d-g~V~vwd~~--~~~--~~~~~~~~h~~~V   96 (737)
                      ....++.|.+|+... ...+....+ .|...+.+++|+|++++|++++.+ +.|.+|++.  +++  .+..+ ..+ ..+
T Consensus        10 ~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~-~~~   86 (343)
T 1ri6_A           10 ASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-ALP-GSL   86 (343)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-ECS-SCC
T ss_pred             eCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc-ccC-CCC
Confidence            335678899998532 222333333 477889999999999988888876 999999997  554  33444 333 388


Q ss_pred             EEEEEeeCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe-CCCcEEE
Q 004685           97 FCTKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQ  174 (737)
Q Consensus        97 ~~v~~sp~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~v  174 (737)
                      .+++|+|+  +.+|++++. ++.|.+||+.....       ......+. ....+.+++|+|++ +++++++ .++.|.+
T Consensus        87 ~~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~  155 (343)
T 1ri6_A           87 THISTDHQ--GQFVFVGSYNAGNVSVTRLEDGLP-------VGVVDVVE-GLDGCHSANISPDN-RTLWVPALKQDRICL  155 (343)
T ss_dssp             SEEEECTT--SSEEEEEETTTTEEEEEEEETTEE-------EEEEEEEC-CCTTBCCCEECTTS-SEEEEEEGGGTEEEE
T ss_pred             cEEEEcCC--CCEEEEEecCCCeEEEEECCCCcc-------cccccccc-CCCCceEEEECCCC-CEEEEecCCCCEEEE
Confidence            99999999  677766654 88999999952110       01133333 33458899999954 5555555 8999999


Q ss_pred             EEcCC-CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC--CCCc
Q 004685          175 HDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM--LPPL  251 (737)
Q Consensus       175 wdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~--~~~~  251 (737)
                      ||+.. ++..            .+..      .....  .....+..++|+|++..+++++..++.|++||+..  +...
T Consensus       156 ~d~~~~~~~~------------~~~~------~~~~~--~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~  215 (343)
T 1ri6_A          156 FTVSDDGHLV------------AQDP------AEVTT--VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE  215 (343)
T ss_dssp             EEECTTSCEE------------EEEE------EEEEC--STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred             EEecCCCcee------------eecc------ccccc--CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence            99986 3210            0000      00000  11235778999998533445555899999999964  2210


Q ss_pred             ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCC
Q 004685          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH  310 (737)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~  310 (737)
                       ..          ....  .+.........+..++|+|+|++|+++. .++.|.+||+..
T Consensus       216 -~~----------~~~~--~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          216 -CV----------QTLD--MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             -EE----------EEEE--CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             -EE----------eecc--ccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence             00          0000  0000000011477899999999888665 689999999874

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=3.3e-17  Score=172.45  Aligned_cols=197  Identities=12%  Similarity=0.148  Sum_probs=120.7

Q ss_pred             CCcEEEEECC--CCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCceeeccC
Q 004685           71 DTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCH  146 (737)
Q Consensus        71 dg~V~vwd~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h  146 (737)
                      ++.|.+|+++  +++........+...+..++|+|+  +.+++++..  ++.|.+|++.....        ..+..+..+
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd--g~l~~~~~~~~~~~v~~~~~~~g~~--------~~~~~~~~~   84 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK--DCLYSVDKEDDEGGIAAWQIDGQTA--------HKLNTVVAP   84 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT--CEEEEEEEETTEEEEEEEEEETTEE--------EEEEEEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC--CeEEEEEecCCCceEEEEEecCCcE--------EEeeeeecC
Confidence            4567777654  555433211345577888999999  564444432  68999999964321        123444556


Q ss_pred             CCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec
Q 004685          147 TRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS  225 (737)
Q Consensus       147 ~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  225 (737)
                      ...+..++|+| ++++|++++ .++.|.+|++......           ..+...........  .......+.+++|+|
T Consensus        85 ~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~-----------~~~~~~~~~~~~p~--~~~~~~~~~~~~~sp  150 (347)
T 3hfq_A           85 GTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGAL-----------TLTDTVQHSGHGPR--PEQDGSHIHYTDLTP  150 (347)
T ss_dssp             SCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCE-----------EEEEEEECCCCCSS--TTCSSCCEEEEEECT
T ss_pred             CCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCe-----------eecceeecCCCCCC--ccccCCCceEEEECC
Confidence            77889999999 456666666 7899999999643211           11111100000000  111234578899999


Q ss_pred             CCCcEEEEEeCCCcEEEEECC-CCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeE
Q 004685          226 TRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHV  303 (737)
Q Consensus       226 ~~~~~l~t~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v  303 (737)
                      ++ +++++...++.|++||+. .+. +....          .     .  ....+..+..++|+|+|++|++++ .++.|
T Consensus       151 dg-~l~v~~~~~~~v~~~~~~~~g~-~~~~~----------~-----~--~~~~g~~p~~~~~spdg~~l~v~~~~~~~v  211 (347)
T 3hfq_A          151 DN-RLAVIDLGSDKVYVYNVSDAGQ-LSEQS----------V-----L--TMEAGFGPRHLVFSPDGQYAFLAGELSSQI  211 (347)
T ss_dssp             TS-CEEEEETTTTEEEEEEECTTSC-EEEEE----------E-----E--ECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CC-cEEEEeCCCCEEEEEEECCCCc-EEEee----------e-----E--EcCCCCCCceEEECCCCCEEEEEeCCCCEE
Confidence            85 577777778999999998 332 11100          0     0  001111367899999999777754 58899


Q ss_pred             EEEEcCC
Q 004685          304 YLMDVNH  310 (737)
Q Consensus       304 ~iwd~~~  310 (737)
                      .+|++..
T Consensus       212 ~v~~~~~  218 (347)
T 3hfq_A          212 ASLKYDT  218 (347)
T ss_dssp             EEEEEET
T ss_pred             EEEEecC
Confidence            9999875

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.80  E-value=4.5e-18  Score=197.36  Aligned_cols=219  Identities=11%  Similarity=0.018  Sum_probs=131.7

Q ss_pred             cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEEcccCc-----------------cceEEE
Q 004685           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-HSIETGHS-----------------ANVFCT   99 (737)
Q Consensus        38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~-~~~~~~h~-----------------~~V~~v   99 (737)
                      ...+....|..+  .+..+.|.  |+.+++++.|+ | +||+.+++.+ ..+ ..+.                 ..|.++
T Consensus        15 ~~~~~~~~~~~~--~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~   87 (706)
T 2z3z_A           15 PGGKEFYNFYPE--YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFRT   87 (706)
T ss_dssp             ---------------CTTCEEE--TTEEEEEETTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCEEE
T ss_pred             CCcccccccccc--cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCceeE
Confidence            334444455544  35567888  66777787787 8 9999998873 333 2332                 469999


Q ss_pred             EEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 004685          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (737)
Q Consensus       100 ~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~  179 (737)
                      +|+|+  +.++++  .++.|++||+....           ...+..+...+.+++|+| +++.|+++ .|+.|.+||+.+
T Consensus        88 ~~spd--~~~~~~--~~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~  150 (706)
T 2z3z_A           88 LDAGR--GLVVLF--TQGGLVGFDMLARK-----------VTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGK  150 (706)
T ss_dssp             EETTT--TEEEEE--ETTEEEEEETTTTE-----------EEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBC
T ss_pred             EECCC--CeEEEE--ECCEEEEEECCCCc-----------eEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCc
Confidence            99998  444444  35999999997532           334445667788999999 55777664 679999999987


Q ss_pred             -----CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-------------------
Q 004685          180 -----GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-------------------  235 (737)
Q Consensus       180 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-------------------  235 (737)
                           ++..........   .+.....        ....+...+.+++|+|+ ++.|++++                   
T Consensus       151 ~~~~~g~~~~~~~~~~~---~~~~g~~--------~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~  218 (706)
T 2z3z_A          151 LGEGMSRAIAVTIDGTE---TLVYGQA--------VHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEA  218 (706)
T ss_dssp             TTSCCCCCEESCSCCBT---TEEESSC--------CGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSC
T ss_pred             ccccCCCcEEeccCCCC---CeEcccc--------hhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCC
Confidence                 543211110000   0000000        00011233578999998 57888887                   


Q ss_pred             --------------CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC
Q 004685          236 --------------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE  301 (737)
Q Consensus       236 --------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg  301 (737)
                                    .+..|++||+.+++......                  ...+. ..+.+++|+|||++|++++.++
T Consensus       219 ~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~------------------~~~~~-~~~~~~~~spdg~~l~~~~~~~  279 (706)
T 2z3z_A          219 ESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT------------------GEPKE-KFLTNLSWSPDENILYVAEVNR  279 (706)
T ss_dssp             EEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC------------------CSCTT-CEEEEEEECTTSSEEEEEEECT
T ss_pred             ceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc------------------CCCCc-eeEeeEEEECCCCEEEEEEeCC
Confidence                          45789999998765321110                  01122 2489999999999999988775


Q ss_pred             -----eEEEEEcCCC
Q 004685          302 -----HVYLMDVNHA  311 (737)
Q Consensus       302 -----~v~iwd~~~~  311 (737)
                           .|++||+.++
T Consensus       280 ~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          280 AQNECKVNAYDAETG  294 (706)
T ss_dssp             TSCEEEEEEEETTTC
T ss_pred             CCCeeEEEEEECCCC
Confidence                 8999998875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.80  E-value=3.9e-17  Score=170.47  Aligned_cols=230  Identities=9%  Similarity=0.050  Sum_probs=161.1

Q ss_pred             CCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeE-EEEEcccCccceEEEE
Q 004685           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKL-LHSIETGHSANVFCTK  100 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~-dg~V~vwd~~~~~~-~~~~~~~h~~~V~~v~  100 (737)
                      ....++.|.+|+  ..+.+....+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+ ..+..+..+++
T Consensus        15 ~~~~~~~v~~~d--~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~   90 (331)
T 3u4y_A           15 VEQHLRRISFFS--TDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVD   90 (331)
T ss_dssp             EEGGGTEEEEEE--TTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEE
T ss_pred             EecCCCeEEEEe--CcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-ccCCCCccceE
Confidence            345577899998  44556666666666777 9999999996666554 89999999999887 6666 55666666699


Q ss_pred             EeeCCCCCEEEEEECCC---cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc-EEEEE
Q 004685          101 FVPETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHD  176 (737)
Q Consensus       101 ~sp~~~~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~-I~vwd  176 (737)
                      |+|+  +.+++++..++   .|.+||+.....          +..+. ......+++|+|++..++++...++. |.+|+
T Consensus        91 ~s~d--g~~l~~~~~~~~~~~i~v~d~~~~~~----------~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~  157 (331)
T 3u4y_A           91 ITPD--DQFAVTVTGLNHPFNMQSYSFLKNKF----------ISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFK  157 (331)
T ss_dssp             ECTT--SSEEEECCCSSSSCEEEEEETTTTEE----------EEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred             ECCC--CCEEEEecCCCCcccEEEEECCCCCe----------EEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence            9999  78888555553   899999985321          33333 34456899999966556666677788 99999


Q ss_pred             cCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC---ccc
Q 004685          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP---LTS  253 (737)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~---~~~  253 (737)
                      +......              .+..   ...+    ........++|+|++..+++++..++.|++||+.+++.   +..
T Consensus       158 ~~~~g~~--------------~~~~---~~~~----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~  216 (331)
T 3u4y_A          158 IDADGVL--------------FDTG---QEFI----SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA  216 (331)
T ss_dssp             ECTTCCE--------------EEEE---EEEE----CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred             ECCCCcE--------------eecC---Cccc----cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence            9864311              0000   0001    11234689999998533556666789999999988765   332


Q ss_pred             ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCC
Q 004685          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG  312 (737)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~  312 (737)
                      +..                    .  ..+..++|+|+|++|+++.. ++.|.+||+.+++
T Consensus       217 ~~~--------------------~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~  254 (331)
T 3u4y_A          217 VGT--------------------N--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGT  254 (331)
T ss_dssp             EEC--------------------S--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred             ccC--------------------C--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence            210                    1  13678999999998877765 7889999998753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=1.1e-17  Score=189.45  Aligned_cols=197  Identities=9%  Similarity=0.018  Sum_probs=136.3

Q ss_pred             CCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC---CCcEEEEecC
Q 004685           50 QGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLS  125 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~iwd~~  125 (737)
                      ..+|.+++|+|||++||.++. ||+++||++.+++.. .+...+...+..++|+|+   .++++++.   +....||.+.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd---~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG---RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS---EEEEEEECSTTSCCEEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC---eEEEEeccCCCCcceEEEEEe
Confidence            458999999999999998887 999999999776654 442333368999999987   57777775   5566777665


Q ss_pred             C--CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685          126 R--FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (737)
Q Consensus       126 ~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (737)
                      .  ...          ...+.. ...+...+|+|++..++++.+.++.+.+||+.+++..            .       
T Consensus        97 ~~~~g~----------~~~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~------------~-------  146 (582)
T 3o4h_A           97 TSRPGE----------EQRLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR------------E-------  146 (582)
T ss_dssp             TTSTTC----------CEECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE------------E-------
T ss_pred             ccCCCc----------cccccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE------------E-------
Confidence            3  111          112221 2234466888865555555555556669999876521            1       


Q ss_pred             ceeeccCCCCCccceEEEEEecCCCcEEEEEeCC----CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                          +...   ..  .+++|+|+ +++|+.++.+    +.|++||+.+++... +                    .++..
T Consensus       147 ----l~~~---~~--~~~~~spD-G~~la~~~~~~~~~~~i~~~d~~~g~~~~-l--------------------~~~~~  195 (582)
T 3o4h_A          147 ----LARL---PG--FGFVSDIR-GDLIAGLGFFGGGRVSLFTSNLSSGGLRV-F--------------------DSGEG  195 (582)
T ss_dssp             ----EEEE---SS--CEEEEEEE-TTEEEEEEEEETTEEEEEEEETTTCCCEE-E--------------------CCSSC
T ss_pred             ----eecC---CC--ceEEECCC-CCEEEEEEEcCCCCeEEEEEcCCCCCceE-e--------------------ecCCC
Confidence                1111   11  68899997 6889887777    789999998765321 1                    11222


Q ss_pred             cceeEEEEcCCCCEEEEEeCCC--eEEEEEcCCCC
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNHAG  312 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg--~v~iwd~~~~~  312 (737)
                       .+..++|||||++|+++..++  .|++||+.+++
T Consensus       196 -~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          196 -SFSSASISPGMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             -EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             -ccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence             488999999999999888888  89999988754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.78  E-value=6e-18  Score=196.85  Aligned_cols=239  Identities=8%  Similarity=0.019  Sum_probs=149.5

Q ss_pred             CcccccccccccccccccceeecccCC---ceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEEc--c
Q 004685           25 DVNHSLQMHSSLVRRLSQERELEGHQG---CVNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIE--T   90 (737)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~l~~H~~---~V~~l~~s~~g~~lasgs~d---------g~V~vwd~~~~~~~~~~~--~   90 (737)
                      +.++++.+|+  ..+.+....+.+|..   .|.+++|||||++|++++.+         +.|.+||+.+++. ..+.  .
T Consensus        34 ~~dg~i~~~d--~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~  110 (723)
T 1xfd_A           34 EQKGTVRLWN--VETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPE  110 (723)
T ss_dssp             CSSSCEEEBC--GGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTT
T ss_pred             eCCCCEEEEE--CCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCc
Confidence            3567899999  445556667777765   49999999999999999764         7888999998875 2331  2


Q ss_pred             cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC------------------ceeE
Q 004685           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR------------------RVKK  152 (737)
Q Consensus        91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~  152 (737)
                      .|...+.+++|+|+  |+.|+.++. +.|++||+..+..          ......+..                  .+.+
T Consensus       111 ~~~~~~~~~~~SPd--G~~la~~~~-~~i~~~~~~~g~~----------~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~  177 (723)
T 1xfd_A          111 VSNAKLQYAGWGPK--GQQLIFIFE-NNIYYCAHVGKQA----------IRVVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (723)
T ss_dssp             CCSCCCSBCCBCSS--TTCEEEEET-TEEEEESSSSSCC----------EEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             cccccccccEECCC--CCEEEEEEC-CeEEEEECCCCce----------EEEecCCCCCceECcccceeEEEEeccCcce
Confidence            34456899999999  789998886 7999999986432          222222222                  2378


Q ss_pred             EEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCC----------CCCCCCCccceEEEeccCCce-eeccCC---CCCccc
Q 004685          153 LAVEVGNPHVVWSASED-GTLRQHDFRQGSSCP----------PAGSSHQECRNILLDLRCGAK-RSLADP---PKQTLS  217 (737)
Q Consensus       153 l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~  217 (737)
                      ++|+| +++.|++++.| +.+.+|++.......          ..+.........+++...+.. ..+...   ..+...
T Consensus       178 ~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~  256 (723)
T 1xfd_A          178 HWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY  256 (723)
T ss_dssp             EEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred             EEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence            99999 55666666544 456666654221100          000001122344555554442 222211   112567


Q ss_pred             eEEEEEecCCCcEEEEEeC----CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce----eEEEEcC
Q 004685          218 LKSCDISSTRPHLLLVGGS----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL----THVTFSP  289 (737)
Q Consensus       218 v~~i~~sp~~~~~l~t~s~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~v~~sp  289 (737)
                      +..++|+|+ ++++++.+.    +..|++||+.+++....+..                    +....+    ..++|+|
T Consensus       257 ~~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------------------~~~~~~~~~~~~~~~sp  315 (723)
T 1xfd_A          257 ITMVKWATS-TKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--------------------ESEAWLHRQNEEPVFSK  315 (723)
T ss_dssp             EEEEEESSS-SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--------------------ECSSCCCCCCCCCEECT
T ss_pred             eEEEEEeCC-CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--------------------ccCCEEeccCCCceEcC
Confidence            889999997 577766643    36799999987753322110                    000112    3679999


Q ss_pred             CCCEEEEE--eCCC
Q 004685          290 NGEEVLLS--YSGE  301 (737)
Q Consensus       290 ~g~~l~~g--~~dg  301 (737)
                      ||+.|+..  ..++
T Consensus       316 dg~~l~~~~~~~~~  329 (723)
T 1xfd_A          316 DGRKFFFIRAIPQG  329 (723)
T ss_dssp             TSCSEEEEEEECCS
T ss_pred             CCCeEEEEEecccC
Confidence            99987764  4466

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.78  E-value=1.6e-17  Score=174.51  Aligned_cols=160  Identities=11%  Similarity=0.073  Sum_probs=110.3

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECCCcEEEEecCCCCCCCCC
Q 004685           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLD  133 (737)
Q Consensus        55 ~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~  133 (737)
                      ++++++++.++++++.++.|.+||..+++.+..+.......+..++|+|+  +.++ +++..++.|.+||+.....    
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~~~~~i~~~d~~t~~~----   77 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTCKN----   77 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTTEE----
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCC--CCEEEEEeCCCCcEEEEeCCCCcE----
Confidence            45688889999999999999999999999888773222236789999999  5654 5666789999999975321    


Q ss_pred             CCCCCCceeecc-C-----CCceeEEEEecCCCcEEEEEeCC------------CcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          134 DNAITPSALYQC-H-----TRRVKKLAVEVGNPHVVWSASED------------GTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       134 ~~~~~~~~~~~~-h-----~~~v~~l~~~p~~~~~l~s~s~D------------g~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                            ...+.. +     ...+..++|+| +++++++++.+            +.|.+||+.+++.....        .
T Consensus        78 ------~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------~  142 (349)
T 1jmx_B           78 ------TFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--------R  142 (349)
T ss_dssp             ------EEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS--------E
T ss_pred             ------EEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCcccccee--------e
Confidence                  222221 1     22378899999 55677777754            89999999875422000        0


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~  254 (737)
                      .           .    .+...+.+++|+|++ + +++++  +.|++||+.+++.+..+
T Consensus       143 ~-----------~----~~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~~~~  182 (349)
T 1jmx_B          143 T-----------F----PMPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYTVAL  182 (349)
T ss_dssp             E-----------E----ECCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEEEEE
T ss_pred             e-----------c----cCCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCceeccc
Confidence            0           0    012257788999984 5 55554  34999999887654433

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.75  E-value=6.5e-16  Score=163.47  Aligned_cols=215  Identities=13%  Similarity=0.137  Sum_probs=127.4

Q ss_pred             CCCEEEEEe----CCCcEEEEEC--CCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC----CcEEEEecCCCCCC
Q 004685           61 KGSLLISGS----DDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD----AEVRLFNLSRFSGR  130 (737)
Q Consensus        61 ~g~~lasgs----~dg~V~vwd~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d----g~I~iwd~~~~~~~  130 (737)
                      ...+++.|+    .++.|.+|++  .+++....... +...+..++|+|+  +.+|++++.+    +.|.+|++....+.
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spd--g~~l~~~~~~~~~~~~v~~~~~~~~~g~   88 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSAD--GKFVYSVNEFSKDQAAVSAFAFDKEKGT   88 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTT--SSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCC--CCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence            334555663    4568999876  45554433312 6677888999999  7888888876    89999998753221


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (737)
                      .      ..+.....+......+++  ++..++++...++.|.+|++.....+....       ..+ ... +.  ....
T Consensus        89 ~------~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~-------~~~-~~~-g~--~~~~  149 (361)
T 3scy_A           89 L------HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS-------DVI-EFK-GS--GPDK  149 (361)
T ss_dssp             E------EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS-------EEE-ECC-CC--CSCT
T ss_pred             E------EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc-------eeE-Ecc-CC--CCCc
Confidence            1      123334445566777887  343444444568899999997654321110       000 000 00  0000


Q ss_pred             CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC------cccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP------LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (737)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (737)
                      ...+...+.+++|+|++..+++++..++.|++|++.....      +....            .......  .....+..
T Consensus       150 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~------------~~~~~~~--~~~~~~~~  215 (361)
T 3scy_A          150 ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG------------TPEAFKV--APGSGPRH  215 (361)
T ss_dssp             TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE------------EEEEEEC--CTTCCEEE
T ss_pred             cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc------------cccceec--CCCCCCeE
Confidence            1122345688999998533445555689999999875431      10000            0000000  11123778


Q ss_pred             EEEcCCCCEEEEEe-CCCeEEEEEcCCC
Q 004685          285 VTFSPNGEEVLLSY-SGEHVYLMDVNHA  311 (737)
Q Consensus       285 v~~sp~g~~l~~g~-~dg~v~iwd~~~~  311 (737)
                      ++|+|+|+++++++ .++.|.+|++.++
T Consensus       216 ~~~spdg~~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          216 LIFNSDGKFAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             EEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred             EEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence            99999999988888 5899999998863

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.74  E-value=4.6e-17  Score=189.22  Aligned_cols=222  Identities=10%  Similarity=0.042  Sum_probs=135.8

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCcc---ceEEEEEeeCCCCCEEEEEEC---------CCcEEEE
Q 004685           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAG---------DAEVRLF  122 (737)
Q Consensus        55 ~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~---~V~~v~~sp~~~~~~l~sgs~---------dg~I~iw  122 (737)
                      +++|+|+|++++++ .|+.|++||+.+++....+ ..|..   .+.+++|+|+  |++|++++.         ++.|++|
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpD--g~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPD--RQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTT--SSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCC--CCeEEEEecCceeEEeecceEEEEE
Confidence            68999999655554 6999999999999877666 44443   4899999999  799988876         7899999


Q ss_pred             ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                      |+..+....        ...+   ...+..++|+| +++.|+.+. ++.|++||+.+++.......++.  ..++.    
T Consensus        96 d~~~g~~~~--------~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~--~~v~~----  156 (719)
T 1z68_A           96 DLSNGEFVR--------GNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE--NKIFN----  156 (719)
T ss_dssp             ETTTTEECC--------SSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBT--TTEEE----
T ss_pred             ECCCCcccc--------ceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc--CCeEc----
Confidence            998643200        0111   24588899999 556676665 78999999987763211100000  00000    


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC----------------------------------cEEEEECCCC
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYDRRML  248 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg----------------------------------~i~iwd~~~~  248 (737)
                      +....+.. ........+++|+|+ ++.|+.++.|.                                  .|++||+.++
T Consensus       157 g~~~~v~~-ee~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~  234 (719)
T 1z68_A          157 GIPDWVYE-EEMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP  234 (719)
T ss_dssp             SSCCHHHH-HHTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH
T ss_pred             ccccceee-eecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC
Confidence            00000000 000012258999998 57888877552                                  7888888765


Q ss_pred             CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC----CeEEEEE----cCCCCcc
Q 004685          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMD----VNHAGGR  314 (737)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d----g~v~iwd----~~~~~~~  314 (737)
                      +....+.          ...+..+  .++.. .+..++|+||++++++....    ..|.+||    +.+++..
T Consensus       235 ~~~~~~~----------~~~~~~~--~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~  295 (719)
T 1z68_A          235 AYVGPQE----------VPVPAMI--ASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP  295 (719)
T ss_dssp             HHHCCEE----------CCCCHHH--HTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred             CccceeE----------ccCCccC--CCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence            4210000          0000001  11222 58999999998877775432    2588899    7665433

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.74  E-value=1.6e-17  Score=180.08  Aligned_cols=219  Identities=11%  Similarity=0.070  Sum_probs=152.9

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------eEEEEE----cccCccceEEEEEeeCCCCCEEE---
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----------KLLHSI----ETGHSANVFCTKFVPETSDELVV---  111 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~----------~~~~~~----~~~h~~~V~~v~~sp~~~~~~l~---  111 (737)
                      +...++.|++++++.++++|+.|+ |+||+....          ..+..+    ...+...|.+++|+|+  +.+|+   
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd--g~~lav~~  111 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD--NLTLSACM  111 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT--SCEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC--CCEEEEEE
Confidence            345689999999999999999987 899875311          011111    0235678999999999  78888   


Q ss_pred             -EEECCCcEEEEecCCCCCCC-CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCC
Q 004685          112 -SGAGDAEVRLFNLSRFSGRG-LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (737)
Q Consensus       112 -sgs~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~  189 (737)
                       +|+.|+.|+|||+....... ...........+.+|...|.+++|+|.++.+|++++.||+|++||++++...      
T Consensus       112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~------  185 (434)
T 2oit_A          112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV------  185 (434)
T ss_dssp             EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE------
T ss_pred             eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce------
Confidence             78889999999987531000 0000011235566799999999999976789999999999999999876311      


Q ss_pred             CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccc
Q 004685          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (737)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (737)
                                         .....|...+.+++|+|+ +++|++|+.||.|++||++ ++....+...            
T Consensus       186 -------------------~~~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~~~------------  232 (434)
T 2oit_A          186 -------------------CATLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIPCP------------  232 (434)
T ss_dssp             -------------------EEEECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEECCC------------
T ss_pred             -------------------eeccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-CcccccccCC------------
Confidence                               011135678999999997 6899999999999999998 4333222110            


Q ss_pred             ccccCCCCcccceeEEEEcCCCCEEEEEe-CCC------eEEEEEcCCC
Q 004685          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGE------HVYLMDVNHA  311 (737)
Q Consensus       270 ~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg------~v~iwd~~~~  311 (737)
                        ......+...|.+++|++++.++++.+ .+|      .+++|++.+.
T Consensus       233 --~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          233 --PFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             --TTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             --cccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence              000111122599999999988776544 343      3899999874

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=1.8e-16  Score=169.45  Aligned_cols=213  Identities=14%  Similarity=0.114  Sum_probs=140.1

Q ss_pred             ccccceeecccCCceEE-----EEEcCCCCEEEEEeC-CC--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE
Q 004685           39 RLSQERELEGHQGCVNA-----ISWNSKGSLLISGSD-DT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV  110 (737)
Q Consensus        39 ~~~~~~~l~~H~~~V~~-----l~~s~~g~~lasgs~-dg--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l  110 (737)
                      +......+..|......     .+|+|||++|+.++. ++  .|.+||+.+++..... ..+...+..++|+|+  +..|
T Consensus        19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~spd--g~~l   95 (388)
T 3pe7_A           19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSPD--DDAL   95 (388)
T ss_dssp             TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECTT--SSEE
T ss_pred             CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcCC--CCEE
Confidence            34556677777766665     789999999998887 66  4888899988876655 566666667889999  7999


Q ss_pred             EEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEE--EecCCCcEEEEE----------------------
Q 004685          111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA--VEVGNPHVVWSA----------------------  166 (737)
Q Consensus       111 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~p~~~~~l~s~----------------------  166 (737)
                      +.++.++.|++||+.....          ......+...+....  ++| ++.+++..                      
T Consensus        96 ~~~~~~~~l~~~d~~~g~~----------~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           96 FYVKDGRNLMRVDLATLEE----------NVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             EEEETTTEEEEEETTTCCE----------EEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             EEEeCCCeEEEEECCCCcc----------eeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhcc
Confidence            9999999999999986432          223333444444343  367 44666532                      


Q ss_pred             eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec-CCCcEEEEEeCC------Cc
Q 004685          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSD------AF  239 (737)
Q Consensus       167 s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~~l~t~s~D------g~  239 (737)
                      ..+..|.+||+.+++.                       ..+.   .+...+..++|+| + ++.|+.+..+      ..
T Consensus       165 ~~~~~l~~~d~~~g~~-----------------------~~l~---~~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~  217 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGES-----------------------TVIL---QENQWLGHPIYRPYD-DSTVAFCHEGPHDLVDAR  217 (388)
T ss_dssp             CCCEEEEEEETTTCCE-----------------------EEEE---EESSCEEEEEEETTE-EEEEEEEECSCTTTSSCS
T ss_pred             CCcceEEEEECCCCce-----------------------EEee---cCCccccccEECCCC-CCEEEEEEecCCCCCcce
Confidence            2345678888776641                       1111   1234578899999 7 5777766653      37


Q ss_pred             EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CC----eEEEEEcCCCC
Q 004685          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE----HVYLMDVNHAG  312 (737)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg----~v~iwd~~~~~  312 (737)
                      |.++|+.........                    .......+..++|+|||+.|+..+. ++    .|++||+.+++
T Consensus       218 l~~~d~~~~~~~~l~--------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~  275 (388)
T 3pe7_A          218 MWLINEDGTNMRKVK--------------------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE  275 (388)
T ss_dssp             EEEEETTSCCCEESC--------------------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred             EEEEeCCCCceEEee--------------------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence            888887654321110                    0111124778899999998765544 22    39999988754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.74  E-value=7.5e-16  Score=162.01  Aligned_cols=238  Identities=9%  Similarity=0.034  Sum_probs=148.9

Q ss_pred             ccccccccccccccccce-eecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCe--EEEEEcccCccceEEEE
Q 004685           27 NHSLQMHSSLVRRLSQER-ELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRK--LLHSIETGHSANVFCTK  100 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~-~l~~H~~~V~~l~~s~~g~~lasgs~---dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~  100 (737)
                      .+.+.+|.....+.+... ....+...+..++|+|+|+ |++++.   ++.|.+||+.+++  .+..+ ..+...+..++
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a   92 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVA   92 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEE
Confidence            456677775444443322 3334567788999999999 554443   6899999998765  33343 45677889999


Q ss_pred             EeeCCCCCEEEEEE-CCCcEEEEecCCCCCCCCCCCCCCCceeecc---------CCCceeEEEEecCCCcEEEEEeCCC
Q 004685          101 FVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC---------HTRRVKKLAVEVGNPHVVWSASEDG  170 (737)
Q Consensus       101 ~sp~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~---------h~~~v~~l~~~p~~~~~l~s~s~Dg  170 (737)
                      |+|+  +++|++++ .++.|.+|++... +..      ..+..+..         +...+.+++|+|++ +++++...++
T Consensus        93 ~spd--g~~l~~~~~~~~~v~v~~~~~~-g~~------~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~  162 (347)
T 3hfq_A           93 VDEA--RQLVYSANYHKGTAEVMKIAAD-GAL------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSD  162 (347)
T ss_dssp             EETT--TTEEEEEETTTTEEEEEEECTT-SCE------EEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTT
T ss_pred             ECCC--CCEEEEEeCCCCEEEEEEeCCC-CCe------eecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCC
Confidence            9999  78888777 6899999999631 110      11222211         22358899999955 5777777789


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC--C
Q 004685          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM--L  248 (737)
Q Consensus       171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~--~  248 (737)
                      .|.+|++......           ..+..        +..  .....+..++|+|++..+++++..++.|++|++..  +
T Consensus       163 ~v~~~~~~~~g~~-----------~~~~~--------~~~--~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g  221 (347)
T 3hfq_A          163 KVYVYNVSDAGQL-----------SEQSV--------LTM--EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG  221 (347)
T ss_dssp             EEEEEEECTTSCE-----------EEEEE--------EEC--CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             EEEEEEECCCCcE-----------EEeee--------EEc--CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence            9999999832211           00000        000  11224678999998533555567789999999874  2


Q ss_pred             CCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE-eCCCeEEEEEcCC
Q 004685          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH  310 (737)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g-~~dg~v~iwd~~~  310 (737)
                      +.. ...          ....  ..........+..++|+|+|++|+++ ..++.|.+|++..
T Consensus       222 ~~~-~~~----------~~~~--~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          222 AFT-QLG----------IVKT--IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEE-EEE----------EEES--SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             ceE-Eee----------eeee--cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            210 000          0000  00000011248889999999988555 5589999999864

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.72  E-value=8.1e-17  Score=182.27  Aligned_cols=77  Identities=6%  Similarity=-0.047  Sum_probs=66.3

Q ss_pred             eecccccceeeeecccCCCCEEEEecCCC--cEEEEEcCcccEEEEeecCCCceEEEE--------ecCCCCeEEEEecC
Q 004685          621 GHCNVGTDIKQASFLGQRGDYIASGSDDG--RWFIWEKQTGRLIKMLLGDEAVVNCVQ--------CHPFDCVVATSGID  690 (737)
Q Consensus       621 gh~~~~~~i~~~~~~s~d~~~l~sgs~D~--~i~iWd~~t~~~~~~l~gH~~~V~~v~--------~sp~~~~l~S~~~D  690 (737)
                      +|.+.+..+.    |||||++|++++.|+  .|++||++++++. .+.+|...|.+++        |||||.++++++.|
T Consensus       192 ~~~~~~~~~~----~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  266 (582)
T 3o4h_A          192 SGEGSFSSAS----ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE  266 (582)
T ss_dssp             CSSCEEEEEE----ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred             cCCCccccce----ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC
Confidence            3333444455    899999999999999  9999999999998 8899999898888        99999999999999


Q ss_pred             CcEEEEcCCCCCCc
Q 004685          691 NTIKIWTPSASVPS  704 (737)
Q Consensus       691 g~i~lW~~~~~~~~  704 (737)
                      |+++||++  ++..
T Consensus       267 g~~~l~~~--g~~~  278 (582)
T 3o4h_A          267 GRSAVFID--GERV  278 (582)
T ss_dssp             TEEEEEET--TEEE
T ss_pred             CcEEEEEE--CCee
Confidence            99999999  5444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.72  E-value=1e-14  Score=154.24  Aligned_cols=245  Identities=7%  Similarity=0.005  Sum_probs=146.6

Q ss_pred             ccccccccccccccc--ccceeecccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCC--CeE--EEEEcccCccc
Q 004685           26 VNHSLQMHSSLVRRL--SQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSS--RKL--LHSIETGHSAN   95 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~--~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d----g~V~vwd~~~--~~~--~~~~~~~h~~~   95 (737)
                      .++.+.+|.....+.  +....+  |...+..++|+|+|++|++++.+    +.|.+|++..  ++.  +..+ ..+...
T Consensus        25 ~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~  101 (361)
T 3scy_A           25 NSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGAD  101 (361)
T ss_dssp             SCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSC
T ss_pred             CCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCC
Confidence            356677776544333  333344  77788899999999999998876    7999998865  432  3333 335556


Q ss_pred             eEEEEEeeCCCCCEEEEEE-CCCcEEEEecCCCCCCCCCCCCCCCcee--------eccCCCceeEEEEecCCCcEEEEE
Q 004685           96 VFCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSAL--------YQCHTRRVKKLAVEVGNPHVVWSA  166 (737)
Q Consensus        96 V~~v~~sp~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~l~s~  166 (737)
                      ...+++  +  +.+|++++ .++.|.+|++........    ......        ...+...+.+++|+|++..+++++
T Consensus       102 p~~~~~--d--g~~l~~~~~~~~~v~~~~~~~~g~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~  173 (361)
T 3scy_A          102 PCYLTT--N--GKNIVTANYSGGSITVFPIGQDGALLP----ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD  173 (361)
T ss_dssp             EEEEEE--C--SSEEEEEETTTTEEEEEEBCTTSCBCS----CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEE--C--CCEEEEEECCCCEEEEEEeCCCCcCcc----cceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence            777777  5  56666665 588999999975221110    000000        011233468899999553455555


Q ss_pred             eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCcEEEEEC
Q 004685          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDR  245 (737)
Q Consensus       167 s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~i~iwd~  245 (737)
                      ..++.|.+|++.........     ......     +......  .........++|+|+ ++++++++ .++.|.+||+
T Consensus       174 ~~~~~v~v~~~~~~~~~~~~-----~~l~~~-----~~~~~~~--~~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~  240 (361)
T 3scy_A          174 LGTDQIHKFNINPNANADNK-----EKFLTK-----GTPEAFK--VAPGSGPRHLIFNSD-GKFAYLINEIGGTVIAFRY  240 (361)
T ss_dssp             TTTTEEEEEEECTTCCTTTC-----CCCEEE-----EEEEEEE--CCTTCCEEEEEECTT-SSEEEEEETTTCEEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCcccc-----cceeec-----cccccee--cCCCCCCeEEEEcCC-CCEEEEEcCCCCeEEEEEe
Confidence            56899999998764310000     000000     0000000  011235678999998 46666655 6899999999


Q ss_pred             CCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC--CeEEEEEcCC
Q 004685          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--EHVYLMDVNH  310 (737)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d--g~v~iwd~~~  310 (737)
                      .++......           ..   ..  ..........++|+|||++|+++..+  +.|.+|++..
T Consensus       241 ~~g~~~~~~-----------~~---~~--~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~  291 (361)
T 3scy_A          241 ADGMLDEIQ-----------TV---AA--DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE  291 (361)
T ss_dssp             ETTEEEEEE-----------EE---ES--CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred             cCCceEEeE-----------EE---ec--CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence            855321100           00   00  00111136789999999999777765  8999999863

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.70  E-value=7e-16  Score=160.97  Aligned_cols=248  Identities=11%  Similarity=0.120  Sum_probs=168.3

Q ss_pred             Ccccccccccccccccccceeecc-cCC-ceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccC----ccceE
Q 004685           25 DVNHSLQMHSSLVRRLSQERELEG-HQG-CVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH----SANVF   97 (737)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~l~~-H~~-~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h----~~~V~   97 (737)
                      ..+++|.+|+.  .+.+....+.. +.. .+.+++|+|+++++ +++..++.|.+||+.+++.+..+...+    ...+.
T Consensus         8 ~~~~~v~~~d~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~   85 (337)
T 1pby_B            8 ARPDKLVVIDT--EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF   85 (337)
T ss_dssp             ETTTEEEEEET--TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred             CCCCeEEEEEC--CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc
Confidence            45678888883  44556666653 222 47899999999765 566678899999999998887763222    23678


Q ss_pred             EEEEeeCCCCCEEEEEE------------CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004685           98 CTKFVPETSDELVVSGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  165 (737)
Q Consensus        98 ~v~~sp~~~~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  165 (737)
                      +++|+|+  +++|+++.            .++.|.+||+....          ....+. ....+.+++|+|+ +++|++
T Consensus        86 ~~~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~-~~~~~~~~~~s~d-g~~l~~  151 (337)
T 1pby_B           86 GAALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETLS----------RRKAFE-APRQITMLAWARD-GSKLYG  151 (337)
T ss_dssp             CEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE----------EEEEEE-CCSSCCCEEECTT-SSCEEE
T ss_pred             ceEECCC--CCEEEEEecccccccccccccCceEEEEECCCCc----------EEEEEe-CCCCcceeEECCC-CCEEEE
Confidence            9999999  68888776            57999999997532          133333 2456788999995 465555


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCCCC--------CCcc----------------------------------ceEEEeccCC
Q 004685          166 ASEDGTLRQHDFRQGSSCPPAGSS--------HQEC----------------------------------RNILLDLRCG  203 (737)
Q Consensus       166 ~s~Dg~I~vwdl~~~~~~~~~~~~--------~~~~----------------------------------~~~~~~~~~~  203 (737)
                      +  ++.|.+||+.+++........        ..+.                                  ...+++...+
T Consensus       152 ~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  229 (337)
T 1pby_B          152 L--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             E--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             e--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence            5  689999999876543110000        0000                                  1234555544


Q ss_pred             ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (737)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (737)
                      ... ......+...+.+++|+|+ +++++++  ++.|++||+.+++.+..+..                    .  ..+.
T Consensus       230 ~~~-~~~~~~~~~~~~~~~~s~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~~--------------------~--~~~~  283 (337)
T 1pby_B          230 EMA-MREVRIMDVFYFSTAVNPA-KTRAFGA--YNVLESFDLEKNASIKRVPL--------------------P--HSYY  283 (337)
T ss_dssp             CEE-EEEEEECSSCEEEEEECTT-SSEEEEE--ESEEEEEETTTTEEEEEEEC--------------------S--SCCC
T ss_pred             Cce-EeecCCCCCceeeEEECCC-CCEEEEe--CCeEEEEECCCCcCcceecC--------------------C--Ccee
Confidence            433 1112223346778999997 5777777  79999999987765433311                    1  1377


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccee
Q 004685          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM  316 (737)
Q Consensus       284 ~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~  316 (737)
                      +++|+|+|++|++++.++.|.+||+.+++....
T Consensus       284 ~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~  316 (337)
T 1pby_B          284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             EEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             eEEECCCCCEEEEEcCCCcEEEEECcCCcEEEE
Confidence            899999999999998899999999998765433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.70  E-value=2.3e-15  Score=158.34  Aligned_cols=249  Identities=9%  Similarity=0.048  Sum_probs=174.3

Q ss_pred             ccccccccccccccccceeecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccCcc---------ce
Q 004685           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSA---------NV   96 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h~~---------~V   96 (737)
                      ++.|.+|+  ..+.+....+... ..+.+++|+|+|+++ +++..++.|.+||..+++.+..+ ..+..         .+
T Consensus        68 ~~~v~~~d--~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~  143 (353)
T 3vgz_A           68 GGVVYRLD--PVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRL-VLDDRKRTEEVRPLQP  143 (353)
T ss_dssp             SEEEEEEC--TTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-ESCCCCCCSSCCCCEE
T ss_pred             CccEEEEc--CCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEE-ecCCCccccccCCCCC
Confidence            56677777  3455566666543 457889999999855 45566899999999999988877 33322         27


Q ss_pred             EEEEEeeCCCCCEEEEEE--CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004685           97 FCTKFVPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ  174 (737)
Q Consensus        97 ~~v~~sp~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~v  174 (737)
                      .+++|+|+  +.++++++  .++.|.+||.....          ....+..+...+.+++|+| +++.+++++.++.|.+
T Consensus       144 ~~~~~s~d--g~~l~~~~~~~~~~i~~~d~~~~~----------~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~  210 (353)
T 3vgz_A          144 RELVADDA--TNTVYISGIGKESVIWVVDGGNIK----------LKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELIT  210 (353)
T ss_dssp             EEEEEETT--TTEEEEEEESSSCEEEEEETTTTE----------EEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEE
T ss_pred             ceEEECCC--CCEEEEEecCCCceEEEEcCCCCc----------eEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEE
Confidence            89999999  67666655  47899999998532          2344443555688999999 5577778888999999


Q ss_pred             EEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC-CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004685          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (737)
Q Consensus       175 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~  253 (737)
                      ||+.+++..              ..        +.. ...+...+.+++|+|++..++++...++.|.+||+.+++.+..
T Consensus       211 ~d~~~~~~~--------------~~--------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          211 IDTADNKIL--------------SR--------KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK  268 (353)
T ss_dssp             EETTTTEEE--------------EE--------EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             EECCCCeEE--------------EE--------EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            999877522              00        111 1123446788999998543444455569999999988765544


Q ss_pred             ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (737)
                      +..                    .   ....++|+|+|++++++. .++.|.+||+.+++... ....+..+..++|+|+
T Consensus       269 ~~~--------------------~---~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~s~d  324 (353)
T 3vgz_A          269 VAA--------------------P---ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK-TFDTPTHPNSLALSAD  324 (353)
T ss_dssp             EEC--------------------S---SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EEECCSEEEEEEECTT
T ss_pred             EEc--------------------C---CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE-EEecCCCCCeEEEcCC
Confidence            321                    0   124589999999777776 58999999999865443 3444556788999998


Q ss_pred             CCCccC
Q 004685          333 LNGLEL  338 (737)
Q Consensus       333 ~~~~~~  338 (737)
                      .+.+..
T Consensus       325 g~~l~v  330 (353)
T 3vgz_A          325 GKTLYV  330 (353)
T ss_dssp             SCEEEE
T ss_pred             CCEEEE
Confidence            765544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.69  E-value=8.6e-16  Score=166.41  Aligned_cols=219  Identities=10%  Similarity=0.023  Sum_probs=145.0

Q ss_pred             cCCceEEEEEcCCCCEEE----EEeCCCcEEEEECCCC--------eE---EEEEcccCccceEEEEEeeCCCCCEEEEE
Q 004685           49 HQGCVNAISWNSKGSLLI----SGSDDTHINVWSYSSR--------KL---LHSIETGHSANVFCTKFVPETSDELVVSG  113 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~la----sgs~dg~V~vwd~~~~--------~~---~~~~~~~h~~~V~~v~~sp~~~~~~l~sg  113 (737)
                      |.+.|++++|+|+|++||    +|+.|+.|+|||+.++        +.   +..+ .+|...|.+++|+|+. +.+|+++
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~-~~~las~  168 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTV-PSMVAVC  168 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSC-TTEEEEE
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCC-CCEEEEE
Confidence            567899999999999999    7889999999998754        11   3334 6799999999999985 6899999


Q ss_pred             ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (737)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~  193 (737)
                      +.||+|++||++...          ......+|...|++++|+| ++++|++|+.||.|++||++ +...          
T Consensus       169 s~Dg~v~iwD~~~~~----------~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~----------  226 (434)
T 2oit_A          169 LADGSIAVLQVTETV----------KVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEK----------  226 (434)
T ss_dssp             ETTSCEEEEEESSSE----------EEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEE----------
T ss_pred             ECCCeEEEEEcCCCc----------ceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Cccc----------
Confidence            999999999998632          1344556889999999999 57899999999999999988 3211          


Q ss_pred             ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEE-EeCCCc------EEEEECCCCCCcccccCCCCCCCCccc
Q 004685          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAF------ARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (737)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t-~s~Dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (737)
                       .. ...      .......|...+.+++|+++. .++++ +..||.      +++|+++.........        ...
T Consensus       227 -~~-~~~------~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~--------~~~  289 (434)
T 2oit_A          227 -KV-IPC------PPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEI--------FVN  289 (434)
T ss_dssp             -EE-ECC------CTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCE--------EEE
T ss_pred             -cc-ccC------CcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCCcc--------eEe
Confidence             00 000      000011244589999999963 44433 344433      8999998653211100        000


Q ss_pred             cccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcC
Q 004685          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN  309 (737)
Q Consensus       267 ~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~  309 (737)
                      +........+... +-..+.+-++.+++++++. .+.|.+....
T Consensus       290 ~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          290 FMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             CCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             cccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEec
Confidence            0000000001111 1223445577788777777 5567777644

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.64  E-value=6.9e-15  Score=154.29  Aligned_cols=250  Identities=10%  Similarity=0.055  Sum_probs=163.5

Q ss_pred             CCCcccccccccccccccccceeecccC-CceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccC-----ccc
Q 004685           23 RPDVNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH-----SAN   95 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h-----~~~   95 (737)
                      ....+++|.+|+.  .+.+...++..+. ..+..++|+|+++++ +++..++.|.+||+.+++.+..+...+     ...
T Consensus        16 ~~~~~~~v~~~d~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~   93 (349)
T 1jmx_B           16 VTNYPNNLHVVDV--ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS   93 (349)
T ss_dssp             EEETTTEEEEEET--TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEEC
T ss_pred             EeCCCCeEEEEEC--CCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccc
Confidence            3445788999984  4455666666443 257899999999865 455678999999999998887763233     234


Q ss_pred             eEEEEEeeCCCCCEEEEEECC------------CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685           96 VFCTKFVPETSDELVVSGAGD------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (737)
Q Consensus        96 V~~v~~sp~~~~~~l~sgs~d------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  163 (737)
                      +.+++|+|+  +.+|++++.+            +.|.+||+......       ..+..+. +...+.+++|+|++ +++
T Consensus        94 ~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------~~~~~~~-~~~~~~~~~~s~dg-~l~  162 (349)
T 1jmx_B           94 MYSFAISPD--GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-------KPVRTFP-MPRQVYLMRAADDG-SLY  162 (349)
T ss_dssp             SSCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-------CCSEEEE-CCSSCCCEEECTTS-CEE
T ss_pred             ccceEECCC--CCEEEEEcccccccccccccCCCeEEEEECCCcccc-------ceeeecc-CCCcccceeECCCC-cEE
Confidence            789999999  7888888765            89999999853211       1123333 34468899999955 544


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCCCCC-----------------Cc--c-------------------------ceEEEe
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPAGSSH-----------------QE--C-------------------------RNILLD  199 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~-----------------~~--~-------------------------~~~~~~  199 (737)
                       +++.  .|.+||+.+++.........                 ..  .                         ....++
T Consensus       163 -~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          163 -VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             -EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             -EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence             4543  49999998876432111110                 00  0                         000012


Q ss_pred             ccCCceeeccCCCCCccceEEEEEec-CCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                      ...+....+.. ......+.+++|+| + +++++++  ++.|.+||+.+++.+..+..                    . 
T Consensus       240 ~~~~~~~~~~~-~~~~~~~~~~~~sp~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~~--------------------~-  294 (349)
T 1jmx_B          240 LKTGKTHTQEF-ADLTELYFTGLRSPKD-PNQIYGV--LNRLAKYDLKQRKLIKAANL--------------------D-  294 (349)
T ss_dssp             TTTCCEEEEEE-EECSSCEEEEEECSSC-TTEEEEE--ESEEEEEETTTTEEEEEEEC--------------------S-
T ss_pred             ccCCcEEeccc-ccCCCcceeeEecCCC-CCEEEEE--cCeEEEEECccCeEEEEEcC--------------------C-
Confidence            22222111111 11233567889999 7 5677777  88999999988765433311                    1 


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 004685          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~  314 (737)
                       ..+.+++|+|+|++|++++.++.|.+||+.+++..
T Consensus       295 -~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          295 -HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             -SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             -CCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence             13678999999999999888999999999986543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.64  E-value=2.1e-15  Score=161.34  Aligned_cols=199  Identities=11%  Similarity=0.037  Sum_probs=120.2

Q ss_pred             eEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           53 VNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        53 V~~l~~s~~g~~lasgs~d---g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      +.+++|+|||++|+.....   ..|.+||+.+++..... ..+......+.|+|+  ++.|+.++.++.|++||+.....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~spd--g~~l~~~~~~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDNTFGGFISTD--ERAFFYVKNELNLMKVDLETLEE  114 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBCTTTCEECTT--SSEEEEEETTTEEEEEETTTCCE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-cCCCCccccceECCC--CCEEEEEEcCCcEEEEECCCCCc
Confidence            7788999999998876543   46888999888754433 333333344789999  79999999999999999875332


Q ss_pred             CCCCCCCCCCceeeccCCCceeE-------------------EEEecCCCcEEEEE-----eCCCcEEEEEcCCCCCCCC
Q 004685          130 RGLDDNAITPSALYQCHTRRVKK-------------------LAVEVGNPHVVWSA-----SEDGTLRQHDFRQGSSCPP  185 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~-------------------l~~~p~~~~~l~s~-----s~Dg~I~vwdl~~~~~~~~  185 (737)
                                ......+......                   +.|+|++ ..++..     ..+..|.+||+.+++.   
T Consensus       115 ----------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~g~~---  180 (396)
T 3c5m_A          115 ----------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIETGEL---  180 (396)
T ss_dssp             ----------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTTCCE---
T ss_pred             ----------EEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCCCcE---
Confidence                      1122222221111                   2344522 322222     3445677777766541   


Q ss_pred             CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC------CcEEEEECCCCCCcccccCCCC
Q 004685          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARLYDRRMLPPLTSCQKRMS  259 (737)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D------g~i~iwd~~~~~~~~~~~~~~~  259 (737)
                                          ..+.   .+...+..+.|+|+++..|+..+.+      ..|.+||+.........     
T Consensus       181 --------------------~~~~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-----  232 (396)
T 3c5m_A          181 --------------------EVIH---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK-----  232 (396)
T ss_dssp             --------------------EEEE---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS-----
T ss_pred             --------------------Eeec---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee-----
Confidence                                1111   1234578899999334666655543      36888888654321110     


Q ss_pred             CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCC
Q 004685          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----EHVYLMDVNHA  311 (737)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d-----g~v~iwd~~~~  311 (737)
                                     .......+..++|+|+|++|+.++.+     +.|++||+.++
T Consensus       233 ---------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          233 ---------------EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             ---------------CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             ---------------ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence                           00111147889999999988777653     34888887664

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.61  E-value=7.1e-14  Score=160.64  Aligned_cols=205  Identities=10%  Similarity=-0.008  Sum_probs=133.8

Q ss_pred             eecccCCceEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEEcccCccceE---------EEEEe--eCCCCCE-E
Q 004685           45 ELEGHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVF---------CTKFV--PETSDEL-V  110 (737)
Q Consensus        45 ~l~~H~~~V~~l~~s~~g~~lasg--s~dg~V~vwd~~~~~~~~~~~~~h~~~V~---------~v~~s--p~~~~~~-l  110 (737)
                      .+.+|...|..++|++++-++++.  +.++...||....+.....+ ..+...+.         ...|+  |+  ++. |
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPD--g~~~l   94 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRPA--GGPLL   94 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCSS--SSCEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeecC--CCeEE
Confidence            466799999999999887777777  56889999996545445555 45655655         66676  88  566 6


Q ss_pred             EEEEC-CCcEEEEecC--C-CCCCCCCCCCCCCceeecc-----CCCceeEEEEecCCCcEEEEEeCC----------Cc
Q 004685          111 VSGAG-DAEVRLFNLS--R-FSGRGLDDNAITPSALYQC-----HTRRVKKLAVEVGNPHVVWSASED----------GT  171 (737)
Q Consensus       111 ~sgs~-dg~I~iwd~~--~-~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~p~~~~~l~s~s~D----------g~  171 (737)
                      +.++. +..|.++++.  . ..           ...+..     |...+.+++|+| +++.|++++.+          ..
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~-----------~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~  162 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAV-----------PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRF  162 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCC-----------CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEE
T ss_pred             EEEECCCCeEEEEcCCCCCCCC-----------CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeE
Confidence            65543 5666666654  1 11           222333     566788999999 55777777766          57


Q ss_pred             EEEEEcCC------CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC--------
Q 004685          172 LRQHDFRQ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD--------  237 (737)
Q Consensus       172 I~vwdl~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D--------  237 (737)
                      |.+||+.+      +...                       .+.  ..+...+..++|+|+ ++.|+.++.+        
T Consensus       163 i~~~~~~~~~~~~~~~~~-----------------------~l~--~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~  216 (662)
T 3azo_A          163 LAAVPLDGSAAADRSAVR-----------------------ELS--DDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEG  216 (662)
T ss_dssp             EEEEETTSTTTTCGGGSE-----------------------ESS--CSCSSEECCCEECTT-SSEEEEEEECTTCCTTTC
T ss_pred             EEEEECCCCccccCCcee-----------------------EEE--ecCCCcccCceECCC-CCEEEEEECCCCCCCCCC
Confidence            99999877      3311                       111  012245677899998 5778776644        


Q ss_pred             CcEEEEECC-CCC--CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC--eEEEEEcCC
Q 004685          238 AFARLYDRR-MLP--PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNH  310 (737)
Q Consensus       238 g~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg--~v~iwd~~~  310 (737)
                      ..|++||+. ++.  ....+.                   . .....+..++|+|||++++++..++  .|++||+.+
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~-------------------~-~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~  274 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLL-------------------G-GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT  274 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEE-------------------E-ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred             cEEEEEEECCCCcccccEEeC-------------------C-CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence            379999998 441  111110                   0 1112488999999999877777788  555555444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.61  E-value=3.6e-13  Score=142.11  Aligned_cols=185  Identities=5%  Similarity=-0.058  Sum_probs=120.8

Q ss_pred             cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEccc----
Q 004685           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG----   91 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~----   91 (737)
                      .++.+.+++  ..+.+.+.++..+..+  .++|+|||++|+++.          .++.|.+||..+++.+..+...    
T Consensus        29 ~d~~v~v~D--~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~  104 (361)
T 2oiz_A           29 TESRVHVYD--YTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV  104 (361)
T ss_dssp             GGCEEEEEE--TTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred             ccCeEEEEE--CCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence            456788887  4556667788777666  899999999998886          3678999999999888877322    


Q ss_pred             -CccceEEEEEeeCCCCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCcee-eccCCCceeEEEEecCCCcEEEEEe
Q 004685           92 -HSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSAS  167 (737)
Q Consensus        92 -h~~~V~~v~~sp~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s  167 (737)
                       +......++|+|+  +++|+++..  ++.|.+||+....          .+.. +. .. ....+.+.|.+...+++.+
T Consensus       105 ~~g~~p~~i~~spd--g~~l~v~n~~~~~~v~v~d~~~~~----------~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A          105 QGLNYDGLFRQTTD--GKFIVLQNASPATSIGIVDVAKGD----------YVEDVTA-AA-GCWSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             CBCCCGGGEEECTT--SSEEEEEEESSSEEEEEEETTTTE----------EEEEEGG-GT-TEEEEEECTTSSSEEEEEE
T ss_pred             ccCCCcceEEECCC--CCEEEEECCCCCCeEEEEECCCCc----------EEEEEec-CC-CcceeEEcCCCCeeEEEEC
Confidence             2345678999999  788887764  6899999998632          1333 22 22 2233567786667888999


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       168 ~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~  247 (737)
                      .||.+.+|++.......          .. ..  .     .......... ..+.++++ +..++..+.++.+.++|+..
T Consensus       171 ~dg~~~~v~~~~~g~~~----------~~-~~--~-----~~~~~~~~~~-~~~~~~~~-g~~~~~~~~~~~v~v~d~~~  230 (361)
T 2oiz_A          171 GDGGLLTINLGEDGKVA----------SQ-SR--S-----KQMFSVKDDP-IFIAPALD-KDKAHFVSYYGNVYSADFSG  230 (361)
T ss_dssp             TTSSEEEEEECTTSSEE----------EE-EE--C-----CCCSCTTTSC-BCSCCEEC-SSEEEEEBTTSEEEEEECSS
T ss_pred             CCCcEEEEEECCCCcEe----------ee-cc--c-----cceEcCCCCc-eEEEeccc-CCEEEEEeCCCeEEEEEecC
Confidence            99999999986532110          00 00  0     0000001111 12233565 35666667889999999875


Q ss_pred             C
Q 004685          248 L  248 (737)
Q Consensus       248 ~  248 (737)
                      .
T Consensus       231 ~  231 (361)
T 2oiz_A          231 D  231 (361)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.61  E-value=1.1e-13  Score=160.95  Aligned_cols=112  Identities=8%  Similarity=0.045  Sum_probs=87.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccc-----eEEEEEeeCCCCCEEEEEECC---------C
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-----VFCTKFVPETSDELVVSGAGD---------A  117 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~-----V~~v~~sp~~~~~~l~sgs~d---------g  117 (737)
                      ...+++|+|||++|+++  |+.|++||+.+++....+ ..|...     ...++|||+  |++|+.++.+         +
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTT--SSEEEEEEEEEECSSSCEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCC--CCEEEEEECCeeeEEEccce
Confidence            35578999999999987  899999999999887666 566532     244889999  7999888876         5


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~  181 (737)
                      .+.+||+..+.           ...+..|...+...+|+| +++.|+.+ .|+.|.+||+.++.
T Consensus        93 ~~~~~d~~~~~-----------~~~l~~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~  143 (740)
T 4a5s_A           93 SYDIYDLNKRQ-----------LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLP  143 (740)
T ss_dssp             EEEEEETTTTE-----------ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSC
T ss_pred             EEEEEECCCCc-----------EEEcccCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCc
Confidence            67799998643           233455777899999999 45666666 46899999998775

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.59  E-value=6.3e-14  Score=148.45  Aligned_cols=195  Identities=10%  Similarity=0.022  Sum_probs=118.1

Q ss_pred             EEEEEeCC--CcEEEEEC--CCCeEEE--EEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC-CCCCCCCCCCC
Q 004685           64 LLISGSDD--THINVWSY--SSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS-RFSGRGLDDNA  136 (737)
Q Consensus        64 ~lasgs~d--g~V~vwd~--~~~~~~~--~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~  136 (737)
                      +|+.|+..  +.|.+|++  .+++...  .........+..++|+|+  +++|++++.+ .|.+|++. .+..       
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd--g~~l~~~~~~-~v~~~~~~~~g~~-------   73 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE--RKNIYGAAMK-KWSSFAVKSPTEI-------   73 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT--SSEEEEEEBT-EEEEEEEEETTEE-------
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC--CCEEEEEccc-eEEEEEECCCCCE-------
Confidence            35555543  46777665  4555422  221123456889999999  7889888888 99999986 3211       


Q ss_pred             CCCceeeccCCCceeEEEEecCCCc--EEEEEe-------------CCCcEEEEEcCC-CCCCCCCCCCCCccceEEEec
Q 004685          137 ITPSALYQCHTRRVKKLAVEVGNPH--VVWSAS-------------EDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       137 ~~~~~~~~~h~~~v~~l~~~p~~~~--~l~s~s-------------~Dg~I~vwdl~~-~~~~~~~~~~~~~~~~~~~~~  200 (737)
                       ..+.....+ +.+.+++|+|+ ++  +++++.             .++.+.+|++.. ++..           ..+.. 
T Consensus        74 -~~~~~~~~~-g~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~-----------~~~~~-  138 (365)
T 1jof_A           74 -VHEASHPIG-GHPRANDADTN-TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE-----------KNVQN-  138 (365)
T ss_dssp             -EEEEEEECC-SSGGGGCTTSC-CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE-----------EEEEE-
T ss_pred             -EEeeEeecC-CCCccEEECCC-CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc-----------ceEee-
Confidence             001111111 23556899994 45  344553             689999999974 3210           00000 


Q ss_pred             cCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCcEEEEECC-CCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                             +.  ..+...+.+++|+|+ +++++++. .++.|++||+. +++.....           .     +.... .
T Consensus       139 -------~~--~~~~~~~~~~~~spd-G~~l~~~~~~~~~v~~~~~~~~g~~~~~~-----------~-----~~~~~-~  191 (365)
T 1jof_A          139 -------YE--YQENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVELVG-----------S-----VDAPD-P  191 (365)
T ss_dssp             -------EE--CCTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEEEEE-----------E-----EECSS-T
T ss_pred             -------EE--eCCCCcceEEEECCC-CCEEEEEcCCCCEEEEEEECCCCCEEEee-----------e-----EecCC-C
Confidence                   00  012346789999998 46676665 46899999998 54421100           0     00000 0


Q ss_pred             ccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Q 004685          279 SLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~  310 (737)
                      +..+..++|+|+|++|++++. ++.|.+|++..
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  224 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence            124888999999999988876 78999998764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.59  E-value=3.1e-13  Score=142.60  Aligned_cols=193  Identities=9%  Similarity=0.061  Sum_probs=122.5

Q ss_pred             CCCEEEEEe------CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE----------CCCcEEEEec
Q 004685           61 KGSLLISGS------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL  124 (737)
Q Consensus        61 ~g~~lasgs------~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs----------~dg~I~iwd~  124 (737)
                      ++++++...      .|+.|.+||..+++.+..+ ..+..+  .++|+|+  +.+++++.          .++.|.+||.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~spd--g~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSND--GKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-ECCEEE--EEEECTT--SSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-cCCCCC--ceEECCC--CCEEEEEEecccccccCCCCCEEEEEEC
Confidence            555555543      3789999999999988888 455555  8999999  78887776          3678999998


Q ss_pred             CCCCCCCCCCCCCCCceeecc------CCCceeEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004685          125 SRFSGRGLDDNAITPSALYQC------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~p~~~~~l~s~s~--Dg~I~vwdl~~~~~~~~~~~~~~~~~~~  196 (737)
                      .+..          .+..+..      +......++++| ++++|+++..  +++|.+||+.+.+.+             
T Consensus        89 ~t~~----------~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~-------------  144 (361)
T 2oiz_A           89 DKLT----------FEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYV-------------  144 (361)
T ss_dssp             TTCC----------EEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEE-------------
T ss_pred             cCCc----------EEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEE-------------
Confidence            7532          1333321      234567899999 5567766653  689999999887522             


Q ss_pred             EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCccccccccccCC
Q 004685          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                       ..       .+..     .....+.+.|.+...+++.+.||.+.+|++.. ++.......       ...+       .
T Consensus       145 -~~-------~i~~-----~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-------~~~~-------~  197 (361)
T 2oiz_A          145 -ED-------VTAA-----AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-------KQMF-------S  197 (361)
T ss_dssp             -EE-------EGGG-----TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-------CCCS-------C
T ss_pred             -EE-------EecC-----CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-------cceE-------c
Confidence             00       0100     11123556776557888889999999999864 322101000       0000       0


Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ....  ...+.++|++..++..+.++.|+++|+...
T Consensus       198 ~~~~--~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~  231 (361)
T 2oiz_A          198 VKDD--PIFIAPALDKDKAHFVSYYGNVYSADFSGD  231 (361)
T ss_dssp             TTTS--CBCSCCEECSSEEEEEBTTSEEEEEECSSS
T ss_pred             CCCC--ceEEEecccCCEEEEEeCCCeEEEEEecCC
Confidence            0000  112334677878888888899999998753

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.57  E-value=1.1e-14  Score=169.12  Aligned_cols=158  Identities=14%  Similarity=0.143  Sum_probs=101.7

Q ss_pred             EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC---ceeEEEEecCCCcEEEEEeC------
Q 004685           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASE------  168 (737)
Q Consensus        98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~------  168 (737)
                      +++|+|+  +. ++..+.|+.|++||+..+..          ...+..+..   .+.+++|+| ++++|++++.      
T Consensus        20 ~~~~s~d--g~-~~~~~~d~~i~~~~~~~g~~----------~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~   85 (719)
T 1z68_A           20 FPNWISG--QE-YLHQSADNNIVLYNIETGQS----------YTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWR   85 (719)
T ss_dssp             CCEESSS--SE-EEEECTTSCEEEEESSSCCE----------EEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSS
T ss_pred             ccEECCC--Ce-EEEEcCCCCEEEEEcCCCcE----------EEEEccccccccceeeEEECC-CCCeEEEEecCceeEE
Confidence            7899999  65 44455799999999986432          233333332   388999999 5677777765      


Q ss_pred             ---CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685          169 ---DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       169 ---Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~  245 (737)
                         ++.|++||+.+++....                    ..+      ...+..++|+|+ ++.|+.+. ++.|++||+
T Consensus        86 ~s~~~~i~~~d~~~g~~~~~--------------------~~l------~~~~~~~~~SPD-G~~la~~~-~~~i~~~~~  137 (719)
T 1z68_A           86 YSYTATYYIYDLSNGEFVRG--------------------NEL------PRPIQYLCWSPV-GSKLAYVY-QNNIYLKQR  137 (719)
T ss_dssp             SCEEEEEEEEETTTTEECCS--------------------SCC------CSSBCCEEECSS-TTCEEEEE-TTEEEEESS
T ss_pred             eecceEEEEEECCCCccccc--------------------eec------CcccccceECCC-CCEEEEEE-CCeEEEEeC
Confidence               78999999988763100                    000      134778999998 57888775 789999999


Q ss_pred             CCCCCcccccCCCCCCCCccccccccccCCCCcc--------cceeEEEEcCCCCEEEEEeCC-CeEEEEEc
Q 004685          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS--------LHLTHVTFSPNGEEVLLSYSG-EHVYLMDV  308 (737)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~v~~sp~g~~l~~g~~d-g~v~iwd~  308 (737)
                      .+++..........    ...     .  .|+..        ....+++|||||++|+.++.| +.+.+|.+
T Consensus       138 ~~g~~~~l~~~~~~----~~v-----~--~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~  198 (719)
T 1z68_A          138 PGDPPFQITFNGRE----NKI-----F--NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY  198 (719)
T ss_dssp             TTSCCEECCCCCBT----TTE-----E--ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             CCCCcEEEecCCCc----CCe-----E--cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence            87764322110000    000     0  01100        012579999999999998865 45555544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.52  E-value=4.4e-12  Score=129.09  Aligned_cols=160  Identities=8%  Similarity=0.088  Sum_probs=107.1

Q ss_pred             cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee------ccCCCceeEEEEecCCCcEEE
Q 004685           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY------QCHTRRVKKLAVEVGNPHVVW  164 (737)
Q Consensus        91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~l~~~p~~~~~l~  164 (737)
                      ++-..+.+++++++  +.++++...++.|.+||....           .+..+      ..+...+..+++.+.++.+++
T Consensus        27 g~~~~p~~v~~~~~--g~l~v~~~~~~~i~~~d~~g~-----------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v   93 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQ--NDIIVADTNNHRIQIFDKEGR-----------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIV   93 (286)
T ss_dssp             TCBSCEEEEEECTT--CCEEEEEGGGTEEEEECTTSC-----------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEE
T ss_pred             CccCCCceEEECCC--CCEEEEECCCCEEEEECCCCc-----------EEEEecccCCCcccccCceEEEEEcCCCeEEE
Confidence            34567899999998  688888888999999997631           12222      234457889999643666666


Q ss_pred             EEeC-CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004685          165 SASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (737)
Q Consensus       165 s~s~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw  243 (737)
                      +... ++.|.+||. .++..              ..        +.  ..+...+.+++++|+ ++++++...++.|.+|
T Consensus        94 ~~~~~~~~i~~~d~-~g~~~--------------~~--------~~--~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~  147 (286)
T 1q7f_A           94 TERSPTHQIQIYNQ-YGQFV--------------RK--------FG--ATILQHPRGVTVDNK-GRIIVVECKVMRVIIF  147 (286)
T ss_dssp             EECGGGCEEEEECT-TSCEE--------------EE--------EC--TTTCSCEEEEEECTT-SCEEEEETTTTEEEEE
T ss_pred             EcCCCCCEEEEECC-CCcEE--------------EE--------ec--CccCCCceEEEEeCC-CCEEEEECCCCEEEEE
Confidence            6543 789999993 33311              00        00  112345789999997 5788877788999999


Q ss_pred             ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      |.. ++.+..+..                  .++ ...+..++++|+|+++++...++.|++||..
T Consensus       148 ~~~-g~~~~~~~~------------------~~~-~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  193 (286)
T 1q7f_A          148 DQN-GNVLHKFGC------------------SKH-LEFPNGVVVNDKQEIFISDNRAHCVKVFNYE  193 (286)
T ss_dssp             CTT-SCEEEEEEC------------------TTT-CSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             cCC-CCEEEEeCC------------------CCc-cCCcEEEEECCCCCEEEEECCCCEEEEEcCC
Confidence            964 332222110                  001 1137899999999977777779999999964

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.50  E-value=2.7e-12  Score=133.64  Aligned_cols=180  Identities=8%  Similarity=0.026  Sum_probs=113.5

Q ss_pred             ccceEEEEEeeCCCCCEEEEEECC------------------------CcEEEEecCCCCCCCCCCCCCCCceeec-cCC
Q 004685           93 SANVFCTKFVPETSDELVVSGAGD------------------------AEVRLFNLSRFSGRGLDDNAITPSALYQ-CHT  147 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~d------------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~  147 (737)
                      -..+.+++++|+  |+++++...+                        +.|.+||..++..          +..+. .+.
T Consensus        23 l~~v~~va~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~----------~~~~~~~~~   90 (329)
T 3fvz_A           23 PGQVSGVALDSK--NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI----------LQSSGKNLF   90 (329)
T ss_dssp             CSCEEEEEECTT--CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------EEEECTTTC
T ss_pred             cCCceEEEECCC--CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------EeccCCCcc
Confidence            356899999999  7888888777                        4799999875321          22222 344


Q ss_pred             CceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCC
Q 004685          148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (737)
Q Consensus       148 ~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  227 (737)
                      ..+..++++| +++++++...++.|.+||........          ..+ . ..+   .......+......++++|++
T Consensus        91 ~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~----------~~~-~-~~~---~~g~~~~~~~~P~~ia~~~~~  154 (329)
T 3fvz_A           91 YLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPL----------LIL-G-RSM---QPGSDQNHFCQPTDVAVEPST  154 (329)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCS----------EEE-S-BTT---BCCCSTTCCSSEEEEEECTTT
T ss_pred             CCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEE----------EEe-c-ccC---CCCCCccccCCCcEEEEeCCC
Confidence            5788999999 55788888889999999976542110          000 0 000   000012334567899999954


Q ss_pred             CcEEEEEe-CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC-CCEEEEEeCCCeEEE
Q 004685          228 PHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYL  305 (737)
Q Consensus       228 ~~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-g~~l~~g~~dg~v~i  305 (737)
                      +.++++.+ .++.|++||. .+..+..+.......          ....++ -.....++++|+ +.++++...++.|++
T Consensus       155 g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~----------~~~~~~-~~~p~gia~d~~~g~l~v~d~~~~~I~~  222 (329)
T 3fvz_A          155 GAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGS----------SPRPGQ-FSVPHSLALVPHLDQLCVADRENGRIQC  222 (329)
T ss_dssp             CCEEEEECSSCCEEEEECT-TSCEEEEECEECCSS----------SCCTTE-ESCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCC----------CCCCcc-cCCCcEEEEECCCCEEEEEECCCCEEEE
Confidence            67888876 6899999994 444433332110000          000001 113788999999 666666667899999


Q ss_pred             EEcCCCC
Q 004685          306 MDVNHAG  312 (737)
Q Consensus       306 wd~~~~~  312 (737)
                      |+..+++
T Consensus       223 ~~~~~G~  229 (329)
T 3fvz_A          223 FKTDTKE  229 (329)
T ss_dssp             EETTTCC
T ss_pred             EECCCCc
Confidence            9988654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.48  E-value=5.5e-12  Score=131.42  Aligned_cols=197  Identities=5%  Similarity=0.009  Sum_probs=132.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      ..|.+++|++++..++..+.++.++.|   .++....+ ..+...+.+++|+|+  +.+++++..++.|.+||...... 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~--g~l~~~~~~~~~i~~~d~~~~~~-   78 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEI-SKKGLQLEGLNFDRQ--GQLFLLDVFEGNIFKINPETKEI-   78 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEE-ESSCCCEEEEEECTT--SCEEEEETTTCEEEEECTTTCCE-
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEE-eccCccccCcEECCC--CCEEEEECCCCEEEEEeCCCCcE-
Confidence            457888999988877777888899999   34555566 556677899999998  68888888899999999875321 


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC----CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D----g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (737)
                               ......+...+.+++++| +++++++...+    +.|.+||..+....            .+         
T Consensus        79 ---------~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~------------~~---------  127 (333)
T 2dg1_A           79 ---------KRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQ------------DI---------  127 (333)
T ss_dssp             ---------EEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCE------------EE---------
T ss_pred             ---------EEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEE------------EE---------
Confidence                     122224567899999999 45777776665    68999998765421            00         


Q ss_pred             eccCCCCCccceEEEEEecCCCcEEEEEeC------CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (737)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (737)
                       +. .......+.+++++|+ ++++++...      .+.|..||...++.. .+.                     ....
T Consensus       128 -~~-~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~---------------------~~~~  182 (333)
T 2dg1_A          128 -IE-DLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PII---------------------QNIS  182 (333)
T ss_dssp             -EC-SSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEE---------------------EEES
T ss_pred             -Ec-cCccCCcccceEECCC-CCEEEEeccccccCCCceEEEEeCCCCEEE-Eee---------------------cCCC
Confidence             00 0112346889999997 466666543      245666665433211 100                     0011


Q ss_pred             ceeEEEEcCCCCEEEEEe-CCCeEEEEEcCC
Q 004685          281 HLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH  310 (737)
Q Consensus       281 ~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~  310 (737)
                      .+..++|+|+|++|+++. .++.|++||+.+
T Consensus       183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          183 VANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            367899999998766554 578999999864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.48  E-value=1.9e-11  Score=135.71  Aligned_cols=206  Identities=10%  Similarity=0.048  Sum_probs=138.1

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCC
Q 004685           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (737)
Q Consensus        60 ~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~  139 (737)
                      |.+.++++...++.|.++|..+++.+..+.  ....+.++.|+|+  +.++++++.|+.|.+||+...+.        +.
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~--~g~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~--------~~  232 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD--TGYAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEP--------TT  232 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSC--------CE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEe--CCCCccceEECCC--CCEEEEEcCCCeEEEEECCCCCC--------cE
Confidence            445677788889999999999999998883  3346779999999  79999999999999999952111        12


Q ss_pred             ceeeccCCCceeEEEEe----cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCC-
Q 004685          140 SALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-  214 (737)
Q Consensus       140 ~~~~~~h~~~v~~l~~~----p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  214 (737)
                      +..+.. ......++|+    |++..++++...++.|.++|..+.+.+.           .+ .  .+.. .+.....| 
T Consensus       233 v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~-----------~i-~--~~~~-~~~~~~~~p  296 (567)
T 1qks_A          233 VAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-----------IQ-S--TRGM-TYDEQEYHP  296 (567)
T ss_dssp             EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-----------EE-E--CCEE-CTTTCCEES
T ss_pred             eEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE-----------EE-e--cccc-ccccccccC
Confidence            344443 3346789999    6554455555667999999987766331           00 0  0000 00000001 


Q ss_pred             ccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEE
Q 004685          215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV  294 (737)
Q Consensus       215 ~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l  294 (737)
                      ...+..+.++++++.+++....+|.|.++|....+.+....                +    ........+.|+|+|+++
T Consensus       297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~----------------i----~~~~~~~d~~~~pdgr~~  356 (567)
T 1qks_A          297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE----------------I----SAERFLHDGGLDGSHRYF  356 (567)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE----------------E----ECCSSEEEEEECTTSCEE
T ss_pred             CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee----------------e----eccccccCceECCCCCEE
Confidence            12567788888777777777788999999987643211100                0    001136678999999998


Q ss_pred             EEEeC-CCeEEEEEcCCCCc
Q 004685          295 LLSYS-GEHVYLMDVNHAGG  313 (737)
Q Consensus       295 ~~g~~-dg~v~iwd~~~~~~  313 (737)
                      +++.. ++.|.++|+.+++.
T Consensus       357 ~va~~~sn~V~ViD~~t~kl  376 (567)
T 1qks_A          357 ITAANARNKLVVIDTKEGKL  376 (567)
T ss_dssp             EEEEGGGTEEEEEETTTTEE
T ss_pred             EEEeCCCCeEEEEECCCCcE
Confidence            88775 78999999998653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.46  E-value=7.3e-12  Score=130.41  Aligned_cols=238  Identities=14%  Similarity=0.091  Sum_probs=161.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCeEEEEEcccCccceEEEEEeeCC
Q 004685           50 QGCVNAISWNSKGSLLISGSDD------------------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~d------------------------g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~  105 (737)
                      -+.|.+|+++|+|+++++...+                        +.|.+||..+++.+..+...+-.....++++|+ 
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~-  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD-  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT-
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC-
Confidence            3679999999999999988877                        479999999898877763345567899999998 


Q ss_pred             CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee---------ccCCCceeEEEEecCCCcEEEEEe-CCCcEEEE
Q 004685          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---------QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQH  175 (737)
Q Consensus       106 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vw  175 (737)
                       +.++++...++.|++|+......         .+..+         ..+......++++|+++.++++.+ .++.|++|
T Consensus       102 -g~l~v~d~~~~~v~~~~~~g~~~---------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~  171 (329)
T 3fvz_A          102 -GNYWVTDVALHQVFKLDPHSKEG---------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF  171 (329)
T ss_dssp             -SCEEEEETTTTEEEEECTTCSSC---------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred             -CCEEEEECCCCEEEEEeCCCCeE---------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence             78888888899999999763210         12222         234557899999996668888886 68999999


Q ss_pred             EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (737)
Q Consensus       176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~  255 (737)
                      |. .+...           ..+-....+    ....+.+......++++|+++.++++...++.|++||..+++.+..+.
T Consensus       172 ~~-~g~~~-----------~~~~~~g~~----~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          172 SP-SGKFV-----------TQWGEESSG----SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             CT-TSCEE-----------EEECEECCS----SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             cC-CCCEE-----------EEeccCCCC----CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            94 33311           000000000    000012234578999999756888888889999999998776554432


Q ss_pred             CCCCCCCCccccccccccCCCCcccceeEEEEcC------CCCEEEEEeCCCeEEEEEcCCCCcceeee---ecCCCCee
Q 004685          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP------NGEEVLLSYSGEHVYLMDVNHAGGRAMRY---TVGDASKI  326 (737)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp------~g~~l~~g~~dg~v~iwd~~~~~~~~~~~---~~~~~~~~  326 (737)
                      ..                   .....+..++|+|      +|...++...+..|++|++.+++....+.   .....+..
T Consensus       236 ~~-------------------~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~  296 (329)
T 3fvz_A          236 HA-------------------SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHD  296 (329)
T ss_dssp             CT-------------------TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEE
T ss_pred             cc-------------------ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeE
Confidence            11                   1112477889999      33333333335589999999876554432   33445667


Q ss_pred             eeeccCC
Q 004685          327 MSFTPTL  333 (737)
Q Consensus       327 ~~~~p~~  333 (737)
                      ++++|+.
T Consensus       297 ia~~~dG  303 (329)
T 3fvz_A          297 IVASEDG  303 (329)
T ss_dssp             EEECTTS
T ss_pred             EEECCCC
Confidence            8888875

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.45  E-value=5e-12  Score=132.50  Aligned_cols=73  Identities=10%  Similarity=0.015  Sum_probs=57.4

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcE-EEEcCCCCCCccccCCCCCC
Q 004685          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTI-KIWTPSASVPSIVSGGAAGP  713 (737)
Q Consensus       635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i-~lW~~~~~~~~~~~~~~~~~  713 (737)
                      |+ |+ ++++++.|+.++|| +.++++ ..+..+.+.|.+++|+|  .++++++.++.. +||.+. ++ ...+.+|...
T Consensus       271 ~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~  342 (347)
T 2gop_A          271 KD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP  342 (347)
T ss_dssp             ET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred             Ec-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence            78 88 99999999999999 987776 45555688999999999  788888877765 788776 44 5556777765


Q ss_pred             Ch
Q 004685          714 DT  715 (737)
Q Consensus       714 ~~  715 (737)
                      ++
T Consensus       343 ~l  344 (347)
T 2gop_A          343 IF  344 (347)
T ss_dssp             TT
T ss_pred             HH
Confidence            54

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.45  E-value=4e-12  Score=146.01  Aligned_cols=86  Identities=10%  Similarity=0.103  Sum_probs=64.4

Q ss_pred             ecccccceeeeecccCCCCEEEEecCCC--cEEEEEcCcccEEEEeecCCCc--------eEEEEecCCCCeEEEEecCC
Q 004685          622 HCNVGTDIKQASFLGQRGDYIASGSDDG--RWFIWEKQTGRLIKMLLGDEAV--------VNCVQCHPFDCVVATSGIDN  691 (737)
Q Consensus       622 h~~~~~~i~~~~~~s~d~~~l~sgs~D~--~i~iWd~~t~~~~~~l~gH~~~--------V~~v~~sp~~~~l~S~~~Dg  691 (737)
                      |...+..+.    |||||+++++++.|+  .|++||+.++++...+.+|...        +.+++|+|+++++++++. +
T Consensus       240 ~~~~~~~~~----~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~  314 (662)
T 3azo_A          240 PEEAIAQAE----WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G  314 (662)
T ss_dssp             TTBCEEEEE----ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred             CCceEcceE----ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence            334444455    899999999999999  6777777788877666666544        678999999999999999 9


Q ss_pred             cEEEE--cCCCCCCccccCCCCCC
Q 004685          692 TIKIW--TPSASVPSIVSGGAAGP  713 (737)
Q Consensus       692 ~i~lW--~~~~~~~~~~~~~~~~~  713 (737)
                      +++||  |+.+++ +..+.+|.+.
T Consensus       315 ~~~l~~~d~~~~~-~~~l~~~~~~  337 (662)
T 3azo_A          315 AAVLGILDPESGE-LVDAAGPWTE  337 (662)
T ss_dssp             SCEEEEEETTTTE-EEECCSSCCE
T ss_pred             ccEEEEEECCCCc-EEEecCCCCe
Confidence            99999  655554 5555655443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.45  E-value=3.7e-12  Score=134.81  Aligned_cols=245  Identities=11%  Similarity=0.095  Sum_probs=148.5

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEcccCccceEEEEEeeCCCCCE--EEEEE-----------
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDEL--VVSGA-----------  114 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~~--l~sgs-----------  114 (737)
                      +...+..++|+|+|++|++++.+ .|.+|++. +++............+.+++|+|+  +++  ++++.           
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC--CCEEEEEEecCCcceecccee
Confidence            34568899999999999999887 99999997 776654331111123567899999  673  44542           


Q ss_pred             --CCCcEEEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcC-CCCCCCCCCCC
Q 004685          115 --GDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFR-QGSSCPPAGSS  189 (737)
Q Consensus       115 --~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~-~~~~~~~~~~~  189 (737)
                        .++.+.+|++... +..     ...+..+. .+...+.+++|+|+ +++++++. .++.|.+||+. +++..      
T Consensus       115 ~~~~g~v~v~~~~~~-g~~-----~~~~~~~~~~~~~~~~~~~~spd-G~~l~~~~~~~~~v~~~~~~~~g~~~------  181 (365)
T 1jof_A          115 YKFAGYGNVFSVSET-GKL-----EKNVQNYEYQENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVE------  181 (365)
T ss_dssp             SSSCCEEEEEEECTT-CCE-----EEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEE------
T ss_pred             ecCCceEEEEccCCC-CcC-----cceEeeEEeCCCCcceEEEECCC-CCEEEEEcCCCCEEEEEEECCCCCEE------
Confidence              6899999999741 110     00011111 24567899999995 56666654 46799999998 44311      


Q ss_pred             CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCcEEEEECC--CCCCcc---cccCCCCCCCC
Q 004685          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRR--MLPPLT---SCQKRMSPPPC  263 (737)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~i~iwd~~--~~~~~~---~~~~~~~~~~~  263 (737)
                            .+.        .+ ..+.+...+..++|+|+ ++++++++ .++.|.+|++.  +++...   .+..       
T Consensus       182 ------~~~--------~~-~~~~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~-------  238 (365)
T 1jof_A          182 ------LVG--------SV-DAPDPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL-------  238 (365)
T ss_dssp             ------EEE--------EE-ECSSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES-------
T ss_pred             ------Eee--------eE-ecCCCCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc-------
Confidence                  000        01 01112345789999998 56776665 47899999875  333210   0000       


Q ss_pred             ccccccccccCCCCcc-----cceeEEE-EcCCCCEEEEEeCC-C-----eEEEEEcC-CCCccee--ee-ecCCCCeee
Q 004685          264 VNYFCPMHLSEHGRSS-----LHLTHVT-FSPNGEEVLLSYSG-E-----HVYLMDVN-HAGGRAM--RY-TVGDASKIM  327 (737)
Q Consensus       264 ~~~~~~~~~~~~~~~~-----~~i~~v~-~sp~g~~l~~g~~d-g-----~v~iwd~~-~~~~~~~--~~-~~~~~~~~~  327 (737)
                         . +...  .++..     ..+..++ |+|||++|+++..+ +     .|.+|++. +++....  .. ..+.....+
T Consensus       239 ---~-~~~~--~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~  312 (365)
T 1jof_A          239 ---I-PPGI--PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN  312 (365)
T ss_dssp             ---S-CTTC--CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC
T ss_pred             ---C-CCCc--CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccc
Confidence               0 0000  01110     0378899 99999998887653 3     89999996 4432221  12 234456678


Q ss_pred             eecc---CCCCccC
Q 004685          328 SFTP---TLNGLEL  338 (737)
Q Consensus       328 ~~~p---~~~~~~~  338 (737)
                      +|+|   +.+.+..
T Consensus       313 a~sp~~~dg~~l~v  326 (365)
T 1jof_A          313 AVSPCPWSDEWMAI  326 (365)
T ss_dssp             CEEECTTCTTEEEE
T ss_pred             eecCCCcCCCEEEE
Confidence            8888   5554443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.41  E-value=6.5e-10  Score=113.33  Aligned_cols=202  Identities=9%  Similarity=0.038  Sum_probs=137.2

Q ss_pred             ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        46 l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~  125 (737)
                      +..+...+.+|+++++|+++++...++.|.+||.. ++........+...+.++++.++  +.++++...++.|..|+..
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD--GEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC--CCEEEeCCCCCeEEEECCC
Confidence            44556789999999999988877768899999988 55433221234577999999998  6888877778899999875


Q ss_pred             CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                      . .  .      . ...+......+.++++++ ++.++++...++.|..||. .+...             .+.      
T Consensus        87 g-~--~------~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~-------------~~~------  135 (299)
T 2z2n_A           87 G-I--I------K-EYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIR-------------EYE------  135 (299)
T ss_dssp             S-C--E------E-EEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEE-------------EEE------
T ss_pred             C-c--E------E-EEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEE-------------Eec------
Confidence            2 1  0      0 111122445788999998 5577777777889999997 43311             000      


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  285 (737)
                           .+.....+.+++++++ +.++++...++.|..||. +++... +..                  . .....+..+
T Consensus       136 -----~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~~~------------------~-~~~~~~~~i  188 (299)
T 2z2n_A          136 -----LPNKGSYPSFITLGSD-NALWFTENQNNAIGRITE-SGDITE-FKI------------------P-TPASGPVGI  188 (299)
T ss_dssp             -----CSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEE-EEC------------------S-STTCCEEEE
T ss_pred             -----CCCCCCCCceEEEcCC-CCEEEEeCCCCEEEEEcC-CCcEEE-eeC------------------C-CCCCcceeE
Confidence                 1112345788999987 467777767789999998 443211 100                  0 001137889


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEc
Q 004685          286 TFSPNGEEVLLSYSGEHVYLMDV  308 (737)
Q Consensus       286 ~~sp~g~~l~~g~~dg~v~iwd~  308 (737)
                      +++++|..+++...++.|.+||.
T Consensus       189 ~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          189 TKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EECTTSSEEEEETTTTEEEEECT
T ss_pred             EECCCCCEEEEccCCceEEEECC
Confidence            99999997666666889999987

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.41  E-value=1.9e-11  Score=130.13  Aligned_cols=252  Identities=9%  Similarity=-0.041  Sum_probs=154.2

Q ss_pred             ccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEE--eeCCCCC
Q 004685           31 QMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF--VPETSDE  108 (737)
Q Consensus        31 ~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~--sp~~~~~  108 (737)
                      ++|.....+.+......+|...+.+++|+|||+.|+.++.++.|++||+.+++....+ ..+...+....|  +|+  +.
T Consensus        61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~d--g~  137 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSD--CT  137 (388)
T ss_dssp             EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTT--SS
T ss_pred             eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCC--CC
Confidence            3443334555555556667666667889999999999999999999999998876655 455555554444  677  67


Q ss_pred             EEEEEE----------------------CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEec-CCCcEEEE
Q 004685          109 LVVSGA----------------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWS  165 (737)
Q Consensus       109 ~l~sgs----------------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s  165 (737)
                      +++...                      .+..|.+||+..+.           ...+..+...+..+.|+| ++ ..|+.
T Consensus       138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-----------~~~l~~~~~~~~~~~~sp~dg-~~l~~  205 (388)
T 3pe7_A          138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-----------STVILQENQWLGHPIYRPYDD-STVAF  205 (388)
T ss_dssp             EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEE-EEEEE
T ss_pred             eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-----------eEEeecCCccccccEECCCCC-CEEEE
Confidence            776432                      34679999988643           344455677789999999 65 55555


Q ss_pred             EeCC------CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEE-EEeCCC
Q 004685          166 ASED------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDA  238 (737)
Q Consensus       166 ~s~D------g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-t~s~Dg  238 (737)
                      +..+      ..|.++|+......                       .+... .....+....|+|++ +.|+ ++..++
T Consensus       206 ~~~~~~~~~~~~l~~~d~~~~~~~-----------------------~l~~~-~~~~~~~~~~~spdg-~~l~~~~~~~~  260 (388)
T 3pe7_A          206 CHEGPHDLVDARMWLINEDGTNMR-----------------------KVKTH-AEGESCTHEFWVPDG-SALVYVSYLKG  260 (388)
T ss_dssp             EECSCTTTSSCSEEEEETTSCCCE-----------------------ESCCC-CTTEEEEEEEECTTS-SCEEEEEEETT
T ss_pred             EEecCCCCCcceEEEEeCCCCceE-----------------------EeeeC-CCCcccccceECCCC-CEEEEEecCCC
Confidence            4442      36777776654311                       11110 111346778999985 5454 443322


Q ss_pred             ----cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE---------eCCCeEEE
Q 004685          239 ----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS---------YSGEHVYL  305 (737)
Q Consensus       239 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g---------~~dg~v~i  305 (737)
                          .|++||+.+++......           +.     ...+.......++|+|||+.|+..         ..+..|++
T Consensus       261 ~~~~~l~~~d~~~g~~~~l~~-----------~~-----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~  324 (388)
T 3pe7_A          261 SPDRFIYSADPETLENRQLTS-----------MP-----ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV  324 (388)
T ss_dssp             CCCEEEEEECTTTCCEEEEEE-----------EC-----CEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred             CCcceEEEEecCCCceEEEEc-----------CC-----CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence                39999998775321100           00     000000001123799999988865         44679999


Q ss_pred             EEcCCCCcceeeeecCC-----------CCeeeeeccCCCCccCC
Q 004685          306 MDVNHAGGRAMRYTVGD-----------ASKIMSFTPTLNGLELQ  339 (737)
Q Consensus       306 wd~~~~~~~~~~~~~~~-----------~~~~~~~~p~~~~~~~~  339 (737)
                      ||+.+++. ..+..+..           .....+|+|+++.+.+.
T Consensus       325 ~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~  368 (388)
T 3pe7_A          325 FNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFT  368 (388)
T ss_dssp             EETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred             EeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEE
Confidence            99998553 33333333           35667899988766554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.40  E-value=4.3e-11  Score=138.48  Aligned_cols=69  Identities=12%  Similarity=-0.035  Sum_probs=56.3

Q ss_pred             ccCCCCEEEEecCCCc--EEEEEcCcccEEEEeecCCCceEEEEecCCCCeEE-EEe---cCCcEEEEcCCCCCC
Q 004685          635 LGQRGDYIASGSDDGR--WFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVA-TSG---IDNTIKIWTPSASVP  703 (737)
Q Consensus       635 ~s~d~~~l~sgs~D~~--i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~-S~~---~Dg~i~lW~~~~~~~  703 (737)
                      +++++.+++++..|+.  |++||+.+|+.++.+..|.+.|.+++++|+++.|+ +.+   ..++|.+||+.+++.
T Consensus       343 ~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  417 (710)
T 2xdw_A          343 CVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (710)
T ss_dssp             EETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCcc
Confidence            5678889999999985  56678778999999999988999999999987444 433   357899999998873

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.36  E-value=1.3e-10  Score=121.06  Aligned_cols=250  Identities=10%  Similarity=0.053  Sum_probs=158.3

Q ss_pred             cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC
Q 004685           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~  105 (737)
                      .+..++.|     ..+....+.++...+.+++|+++|++++++..++.|.+||..+++..... ..+...+.+++|+|+ 
T Consensus        25 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~d-   97 (333)
T 2dg1_A           25 SESELQTI-----TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD-   97 (333)
T ss_dssp             CGGGSCEE-----ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT-
T ss_pred             ecccCccc-----ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCC-
Confidence            34555555     23455667777778899999999998888989999999999888765544 346678999999999 


Q ss_pred             CCCEEEEEECC----CcEEEEecCCCCCCCCCCCCCCCceee--ccCCCceeEEEEecCCCcEEEEEeC------CCcEE
Q 004685          106 SDELVVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASE------DGTLR  173 (737)
Q Consensus       106 ~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~------Dg~I~  173 (737)
                       +.++++...+    +.|.+||......          ...+  ..+...+.+++++| ++.++++...      .+.|.
T Consensus        98 -g~l~v~~~~~~~~~~~i~~~d~~~~~~----------~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~  165 (333)
T 2dg1_A           98 -GRLFVCYLGDFKSTGGIFAATENGDNL----------QDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVY  165 (333)
T ss_dssp             -SCEEEEECTTSSSCCEEEEECTTSCSC----------EEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEE
T ss_pred             -CcEEEEeCCCCCCCceEEEEeCCCCEE----------EEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEE
Confidence             6887777666    6899999875321          1111  12345789999999 5577766553      24455


Q ss_pred             EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcc
Q 004685          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLT  252 (737)
Q Consensus       174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~  252 (737)
                      .+|...++..            .+.              .....+..++|+|++..++++.+.++.|.+||+.. +..+.
T Consensus       166 ~~~~~~~~~~------------~~~--------------~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~  219 (333)
T 2dg1_A          166 YVSPDFRTVT------------PII--------------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ  219 (333)
T ss_dssp             EECTTSCCEE------------EEE--------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE
T ss_pred             EEeCCCCEEE------------Eee--------------cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcc
Confidence            5554433210            000              01124678999997433455556688999999864 22221


Q ss_pred             cccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCC------CCee
Q 004685          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD------ASKI  326 (737)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~  326 (737)
                      .+..        ..+  ...  .++  ..+..++++++|.++++...++.|.+||.. ++..........      .+..
T Consensus       220 ~~~~--------~~~--~~~--~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~  284 (333)
T 2dg1_A          220 PFGA--------TIP--YYF--TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTH  284 (333)
T ss_dssp             EEEE--------EEE--EEC--CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCE
T ss_pred             cccc--------eEE--Eec--CCC--CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcce
Confidence            1100        000  000  111  137789999999988877788999999984 343332222221      4667


Q ss_pred             eeeccCCCC
Q 004685          327 MSFTPTLNG  335 (737)
Q Consensus       327 ~~~~p~~~~  335 (737)
                      ++|+|+...
T Consensus       285 ~~~~~dg~~  293 (333)
T 2dg1_A          285 PQFIPGTNQ  293 (333)
T ss_dssp             EEECTTSCE
T ss_pred             EEECCCCCE
Confidence            778776433

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.36  E-value=1.6e-11  Score=142.84  Aligned_cols=261  Identities=10%  Similarity=0.090  Sum_probs=159.6

Q ss_pred             ccccccccccccccccceeecccCCc-----eEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEEcccC
Q 004685           27 NHSLQMHSSLVRRLSQERELEGHQGC-----VNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIETGH   92 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~~H~~~-----V~~l~~s~~g~~lasgs~d---------g~V~vwd~~~~~~~~~~~~~h   92 (737)
                      +++|.+|+  ..+.+....+.+|...     ...++|||||++|+.++.+         +.+.+||+.+++... + ..|
T Consensus        35 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l-~~~  110 (740)
T 4a5s_A           35 ENNILVFN--AEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E-ERI  110 (740)
T ss_dssp             TTEEEEEE--TTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S-SCC
T ss_pred             CCcEEEEE--CCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-c-ccC
Confidence            67889998  4445555667777643     2447899999999998876         566799999987653 4 567


Q ss_pred             ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCC---------ceeEEEEecCCCcEE
Q 004685           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVV  163 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~p~~~~~l  163 (737)
                      ...+...+|||+  |+.|+.+. |+.|++|++..+....... .-.....+.++.+         ....+.|+| +++.|
T Consensus       111 ~~~~~~~~~SPd--G~~la~~~-~~~i~~~~~~~~~~~~lt~-~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~l  185 (740)
T 4a5s_A          111 PNNTQWVTWSPV--GHKLAYVW-NNDIYVKIEPNLPSYRITW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFL  185 (740)
T ss_dssp             CTTEEEEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEE
T ss_pred             CCcceeeEECCC--CCEEEEEE-CCeEEEEECCCCceEEEcC-CCCccceecCcccccccchhcCCCcceEECC-CCCEE
Confidence            788999999999  78888875 6899999987643221100 0000111222222         224589999 55666


Q ss_pred             EEEeCC-CcEEEEEcCCCCCC------------CCCCCCCCccceEEEeccC---C---ceeeccCCC---CCccceEEE
Q 004685          164 WSASED-GTLRQHDFRQGSSC------------PPAGSSHQECRNILLDLRC---G---AKRSLADPP---KQTLSLKSC  221 (737)
Q Consensus       164 ~s~s~D-g~I~vwdl~~~~~~------------~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~---~~~~~v~~i  221 (737)
                      +..+.| +.+.+|++......            +..+.........++++..   +   ....+....   .+...+..+
T Consensus       186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  265 (740)
T 4a5s_A          186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV  265 (740)
T ss_dssp             EEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred             EEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEE
Confidence            666544 44888877432211            0111112223455677766   5   333332211   266778999


Q ss_pred             EEecCCCcEEEEEeC----CCcEEEEECCCCCC------cccccCCCCCCCCccccccccccCCCCcccce-----eEEE
Q 004685          222 DISSTRPHLLLVGGS----DAFARLYDRRMLPP------LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL-----THVT  286 (737)
Q Consensus       222 ~~sp~~~~~l~t~s~----Dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~v~  286 (737)
                      +|+|+ ++.++....    +..|++||+.+++.      +..+.                  ..++.. .+     ..++
T Consensus       266 ~wspd-g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~------------------~~~~~~-~v~~~~~~~p~  325 (740)
T 4a5s_A          266 TWATQ-ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI------------------EMSTTG-WVGRFRPSEPH  325 (740)
T ss_dssp             EEEET-TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE------------------EECSSS-CSSSSSCCCCE
T ss_pred             EEeCC-CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee------------------eccCCc-eEccCcCCCce
Confidence            99998 565555432    34799999987751      11110                  000110 12     3578


Q ss_pred             EcCCCCEEE-EEeC-C--CeEEEEEcCCCCccee
Q 004685          287 FSPNGEEVL-LSYS-G--EHVYLMDVNHAGGRAM  316 (737)
Q Consensus       287 ~sp~g~~l~-~g~~-d--g~v~iwd~~~~~~~~~  316 (737)
                      |+|||+.|+ ..+. +  ..|++||+..+.....
T Consensus       326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l  359 (740)
T 4a5s_A          326 FTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI  359 (740)
T ss_dssp             ECTTSSEEEEEEECTTSCEEEEEEETTCSSCEES
T ss_pred             EcCCCCEEEEEEEcCCCceEEEEEECCCCceEec
Confidence            999999877 6654 3  4788899887554433

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.36  E-value=1.3e-10  Score=118.02  Aligned_cols=221  Identities=10%  Similarity=0.124  Sum_probs=149.1

Q ss_pred             cccccccccccccccccceeec------ccCCceEEEEE-cCCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCccceE
Q 004685           26 VNHSLQMHSSLVRRLSQERELE------GHQGCVNAISW-NSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVF   97 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~------~H~~~V~~l~~-s~~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~h~~~V~   97 (737)
                      .++.|.+|+..   .+....+.      +|...+.++++ .+++.++++... ++.|.+|| .+++.+..+...+...+.
T Consensus        49 ~~~~i~~~d~~---g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~  124 (286)
T 1q7f_A           49 NNHRIQIFDKE---GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPR  124 (286)
T ss_dssp             GGTEEEEECTT---SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEE
T ss_pred             CCCEEEEECCC---CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCce
Confidence            34567777632   23333442      34567899999 577777777643 78999999 566777666334456789


Q ss_pred             EEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeec--cCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004685           98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (737)
Q Consensus        98 ~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw  175 (737)
                      ++++.|+  +.++++...++.|.+||...   .        .+..+.  .+...+.++++++ +++++++...++.|.+|
T Consensus       125 ~i~~~~~--g~l~v~~~~~~~i~~~~~~g---~--------~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~  190 (286)
T 1q7f_A          125 GVTVDNK--GRIIVVECKVMRVIIFDQNG---N--------VLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVF  190 (286)
T ss_dssp             EEEECTT--SCEEEEETTTTEEEEECTTS---C--------EEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEE
T ss_pred             EEEEeCC--CCEEEEECCCCEEEEEcCCC---C--------EEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEE
Confidence            9999998  68888888889999999652   1        122232  3445689999999 55788787888999999


Q ss_pred             EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC-cEEEEECCCCCCcccc
Q 004685          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSC  254 (737)
Q Consensus       176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg-~i~iwd~~~~~~~~~~  254 (737)
                      |..... .              ..        + ....+...+.+++++++ ++++++...++ .|.+||.. ++.+..+
T Consensus       191 ~~~g~~-~--------------~~--------~-~~~g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~~-g~~~~~~  244 (286)
T 1q7f_A          191 NYEGQY-L--------------RQ--------I-GGEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQD-GQLISAL  244 (286)
T ss_dssp             ETTCCE-E--------------EE--------E-SCTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECTT-SCEEEEE
T ss_pred             cCCCCE-E--------------EE--------E-ccCCccCCCcEEEECCC-CCEEEEeCCCCEEEEEECCC-CCEEEEE
Confidence            974321 0              00        1 01112346789999997 57888877775 99999964 3333222


Q ss_pred             cCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      ..                  ... ...+..++++|+|+++++ +.++.|++|++..
T Consensus       245 ~~------------------~~~-~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          245 ES------------------KVK-HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EE------------------SSC-CSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             cc------------------cCC-CCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            11                  001 113778999999986666 6799999999865

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.34  E-value=5.1e-11  Score=137.47  Aligned_cols=74  Identities=7%  Similarity=-0.137  Sum_probs=57.8

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcC-cccEEEEeecC-CCceEEEEecCCCCeEE----EEecCCcEEEEcCCCCCCccccC
Q 004685          635 LGQRGDYIASGSDDGRWFIWEKQ-TGRLIKMLLGD-EAVVNCVQCHPFDCVVA----TSGIDNTIKIWTPSASVPSIVSG  708 (737)
Q Consensus       635 ~s~d~~~l~sgs~D~~i~iWd~~-t~~~~~~l~gH-~~~V~~v~~sp~~~~l~----S~~~Dg~i~lW~~~~~~~~~~~~  708 (737)
                      ++ ++.++++++.|+..+||.++ +|+.++.+..| .+.|.+++++|+++.|+    |...+++|++||+.+++. ..++
T Consensus       327 ~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~  404 (695)
T 2bkl_A          327 IV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWA  404 (695)
T ss_dssp             EE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEE
T ss_pred             EE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEe
Confidence            44 78899999999999999776 57778888877 78899999999998555    333467899999998874 3344


Q ss_pred             CC
Q 004685          709 GA  710 (737)
Q Consensus       709 ~~  710 (737)
                      .+
T Consensus       405 ~~  406 (695)
T 2bkl_A          405 KV  406 (695)
T ss_dssp             EC
T ss_pred             cC
Confidence            33

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.34  E-value=3e-10  Score=116.10  Aligned_cols=160  Identities=10%  Similarity=0.025  Sum_probs=106.0

Q ss_pred             ccCccceEEEEEeeCCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC
Q 004685           90 TGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE  168 (737)
Q Consensus        90 ~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  168 (737)
                      ..+.....+++|+|+  ++ +++++..++.|..|+....            ...+..+...+.++++++ ++.++++...
T Consensus        24 ~~~~~~~eg~~~d~~--g~~l~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~~~l~~~~-dg~l~v~~~~   88 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPA--RSAVIFSDVRQNRTWAWSDDGQ------------LSPEMHPSHHQNGHCLNK-QGHLIACSHG   88 (296)
T ss_dssp             ECCCSSEEEEEEEGG--GTEEEEEEGGGTEEEEEETTSC------------EEEEESSCSSEEEEEECT-TCCEEEEETT
T ss_pred             ecCCccccCCeEeCC--CCEEEEEeCCCCEEEEEECCCC------------eEEEECCCCCcceeeECC-CCcEEEEecC
Confidence            345567789999999  66 7888888999999998752            234445667789999999 5577777767


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEE----Ee---------
Q 004685          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV----GG---------  235 (737)
Q Consensus       169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t----~s---------  235 (737)
                      ++.|.+||..+++..            .+.....         ......+..++++|+ ++++++    |+         
T Consensus        89 ~~~i~~~d~~~g~~~------------~~~~~~~---------~~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~  146 (296)
T 3e5z_A           89 LRRLERQREPGGEWE------------SIADSFE---------GKKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGG  146 (296)
T ss_dssp             TTEEEEECSTTCCEE------------EEECEET---------TEECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCC
T ss_pred             CCeEEEEcCCCCcEE------------EEeeccC---------CCCCCCCCCEEECCC-CCEEEECCccccccccccccc
Confidence            789999998766521            1110000         001234577899997 577776    32         


Q ss_pred             ----CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          236 ----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       236 ----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                          ..+.|..++.. ++ +..+.                    .+ ......++|+|+|+.+++.+.++.|++|++.
T Consensus       147 ~~~~~~~~l~~~~~~-g~-~~~~~--------------------~~-~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          147 EMELPGRWVFRLAPD-GT-LSAPI--------------------RD-RVKPNGLAFLPSGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             CCCSSSCEEEEECTT-SC-EEEEE--------------------CC-CSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             cccCCCcEEEEECCC-CC-EEEee--------------------cC-CCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence                12455555544 22 11110                    01 1136789999999999767778999999987

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.30  E-value=4.2e-11  Score=138.14  Aligned_cols=203  Identities=9%  Similarity=0.010  Sum_probs=125.8

Q ss_pred             ccCCceEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCeEE-EEEcccCccceEEEEEeeCCCCCEEEEEECCCc---
Q 004685           48 GHQGCVNAISWNSKGSLLI-----SGSDDTHINVWSYSSRKLL-HSIETGHSANVFCTKFVPETSDELVVSGAGDAE---  118 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~la-----sgs~dg~V~vwd~~~~~~~-~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~---  118 (737)
                      +|...+.+++|||||++||     .|+.+..|++||+.+++.+ ...  ........++|+|+  +..|+.++.|..   
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~~~~~~~~wspD--g~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV--IEGGKYATPKWTPD--SKGFYYEWLPTDPSI  193 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC--BSCCTTCCCEECTT--SSEEEEEECCCCTTS
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc--cCcccccceEEecC--CCEEEEEEecCCCCC
Confidence            4556799999999999998     4455678999999998865 211  11111268999999  789999988776   


Q ss_pred             ----------EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC----cEEEEEcCCCCCCC
Q 004685          119 ----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSCP  184 (737)
Q Consensus       119 ----------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg----~I~vwdl~~~~~~~  184 (737)
                                |++|++.+.....      ..+.....+...+..+.|+|++ ++|+.++.++    .|.+|+...+..  
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~------~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~--  264 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKD------TVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF--  264 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGC------EEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC--
T ss_pred             ccccCCCCCEEEEEECCCCchhc------eEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce--
Confidence                      9999998643211      1122333455678899999955 5555555444    455554333221  


Q ss_pred             CCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe---CCCcEEEEECCCCCC--cccccCCCC
Q 004685          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPP--LTSCQKRMS  259 (737)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s---~Dg~i~iwd~~~~~~--~~~~~~~~~  259 (737)
                                ..+..              +...+....+ +++ .+++.+.   .++.|.+||+.++..  ...+.    
T Consensus       265 ----------~~l~~--------------~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~----  314 (695)
T 2bkl_A          265 ----------RLLVK--------------GVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARASWKEIV----  314 (695)
T ss_dssp             ----------EEEEE--------------CSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEE----
T ss_pred             ----------EEeec--------------CCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccCCeEEe----
Confidence                      11110              1123344445 544 4544444   258899999876532  01110    


Q ss_pred             CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                                    .+ +....+..++|+ ++.++++...|+..++|.+.
T Consensus       315 --------------~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          315 --------------PE-DSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             --------------CC-CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             --------------cC-CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence                          01 112247788888 67778888889988888765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.30  E-value=2e-10  Score=119.29  Aligned_cols=183  Identities=5%  Similarity=-0.082  Sum_probs=116.5

Q ss_pred             CCCcEEEEECCCCeEEEEEcc-----cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeec
Q 004685           70 DDTHINVWSYSSRKLLHSIET-----GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ  144 (737)
Q Consensus        70 ~dg~V~vwd~~~~~~~~~~~~-----~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  144 (737)
                      .++.|.+||..+++....+..     .......++.+..   +.++++...++.|.+||..+...          +..+.
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~---~~lyv~~~~~~~v~viD~~t~~~----------~~~i~   81 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD---GIGWIVVNNSHVIFAIDINTFKE----------VGRIT   81 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET---TEEEEEEGGGTEEEEEETTTCCE----------EEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC---CEEEEEEcCCCEEEEEECcccEE----------EEEcC
Confidence            478999999999987665421     1224467787754   36677777789999999986332          34443


Q ss_pred             cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEe
Q 004685          145 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  224 (737)
Q Consensus       145 ~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  224 (737)
                       .......++++++ +.++++...++.|.+||+.+++..              ..+.      +............+++ 
T Consensus        82 -~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~--------------~~i~------~g~~~~~~~~p~~i~~-  138 (328)
T 3dsm_A           82 -GFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEIT--------------GYIE------CPDMDMESGSTEQMVQ-  138 (328)
T ss_dssp             -CCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEE--------------EEEE------CTTCCTTTCBCCCEEE-
T ss_pred             -CCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEE--------------EEEE------cCCccccCCCcceEEE-
Confidence             3466889999884 466655558899999999876522              0000      0000011113445666 


Q ss_pred             cCCCcEEEEEe-CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC---
Q 004685          225 STRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---  300 (737)
Q Consensus       225 p~~~~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d---  300 (737)
                      . ++.++++.. .++.|.+||+.+++.+..+...                      .....++++|+|++++++..+   
T Consensus       139 ~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g----------------------~~p~~i~~~~dG~l~v~~~~~~~~  195 (328)
T 3dsm_A          139 Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG----------------------IQPTSLVMDKYNKMWTITDGGYEG  195 (328)
T ss_dssp             E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS----------------------SCBCCCEECTTSEEEEEBCCBCTT
T ss_pred             E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC----------------------CCccceEEcCCCCEEEEECCCccC
Confidence            3 344555544 4899999999987655443210                      024568899999877666554   


Q ss_pred             -------CeEEEEEcCCC
Q 004685          301 -------EHVYLMDVNHA  311 (737)
Q Consensus       301 -------g~v~iwd~~~~  311 (737)
                             +.|.++|..++
T Consensus       196 ~~~~~~~~~v~~id~~t~  213 (328)
T 3dsm_A          196 SPYGYEAPSLYRIDAETF  213 (328)
T ss_dssp             CSSCBCCCEEEEEETTTT
T ss_pred             CccccCCceEEEEECCCC
Confidence                   67888887663

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.28  E-value=7.1e-09  Score=109.32  Aligned_cols=193  Identities=12%  Similarity=-0.011  Sum_probs=118.2

Q ss_pred             EcCCCCEEEEEeC--CC---cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE----------CCCcEEEE
Q 004685           58 WNSKGSLLISGSD--DT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLF  122 (737)
Q Consensus        58 ~s~~g~~lasgs~--dg---~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs----------~dg~I~iw  122 (737)
                      ..|++++++....  ..   .|.+||..+++.+..+. ....+  .++++|+  ++.++.+.          .++.|.+|
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~-~g~~p--~i~~spD--g~~lyv~n~~~~~~~rg~~~~~v~vi  102 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN-GGFLP--NPVAAHS--GSEFALASTSFSRIAKGKRTDYVEVF  102 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEec-CCCCC--CeEECCC--CCEEEEEeccccccccCCCCCeEEEE
Confidence            3467777766653  22   88999999999888883 33333  9999999  67777765          36789999


Q ss_pred             ecCCCCCCCCCCCCCCCceeecc-------CCCceeEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685          123 NLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQEC  193 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~--Dg~I~vwdl~~~~~~~~~~~~~~~~  193 (737)
                      |..+...          +..+..       +......+.|+|+ +++|++++.  ++.|.++| .+++....        
T Consensus       103 D~~t~~~----------~~~i~~~~~~~~~~g~~p~~~~~spD-G~~l~v~n~~~~~~v~viD-~t~~~~~~--------  162 (373)
T 2mad_H          103 DPVTFLP----------IADIELPDAPRFDVGPYSWMNANTPN-NADLLFFQFAAGPAVGLVV-QGGSSDDQ--------  162 (373)
T ss_pred             ECCCCcE----------EEEEECCCccccccCCCccceEECCC-CCEEEEEecCCCCeEEEEE-CCCCEEeE--------
Confidence            9975321          222111       0123458999994 566666653  57899999 87753200        


Q ss_pred             ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004685          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (737)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (737)
                         +          +. .   .   .++.+.|.+...+++.+.||.+.++|. +++........           + .. 
T Consensus       163 ---~----------i~-~---~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~-----------~-~~-  208 (373)
T 2mad_H          163 ---L----------LS-S---P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG-----------A-ML-  208 (373)
T ss_pred             ---E----------cC-C---C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc-----------c-cc-
Confidence               0          00 0   0   124455665567788888999999999 76543221000           0 00 


Q ss_pred             CCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       274 ~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                       .+... -.....+.+++..++..+..+.+.+.|+...
T Consensus       209 -~~~~p-~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~  244 (373)
T 2mad_H          209 -TAAQN-LLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             -cCCcc-eeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence             00000 1233567777665555557789999998753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.26  E-value=5.7e-11  Score=126.70  Aligned_cols=223  Identities=7%  Similarity=-0.066  Sum_probs=136.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEE-------------------EEEeeCCCCCEEEEE
Q 004685           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC-------------------TKFVPETSDELVVSG  113 (737)
Q Consensus        53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~-------------------v~~sp~~~~~~l~sg  113 (737)
                      ...+.|+|||++|+.++.++.|.+||+.+++..... ..+......                   +.|+|+  ++.++.+
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd--g~~~~~~  159 (396)
T 3c5m_A           83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL--TSWEKFA  159 (396)
T ss_dssp             TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC--CSHHHHH
T ss_pred             cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCC--Ccceeee
Confidence            334789999999999999999999999988765544 333332222                   345666  4544433


Q ss_pred             -----ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC------CcEEEEEcCCCCC
Q 004685          114 -----AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSS  182 (737)
Q Consensus       114 -----s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D------g~I~vwdl~~~~~  182 (737)
                           ..+..|.+||+..+.           ...+..+...+..+.|+|.++..|+..+.+      ..|.+||+..+..
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~-----------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~  228 (396)
T 3c5m_A          160 EFYHTNPTCRLIKVDIETGE-----------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV  228 (396)
T ss_dssp             HHHHTCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred             eeccCCCcceEEEEECCCCc-----------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence                 356789999987532           233335667789999999434544444433      3577888765431


Q ss_pred             CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC-----CcEEEEECCCCCCcccccCC
Q 004685          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRMLPPLTSCQKR  257 (737)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-----g~i~iwd~~~~~~~~~~~~~  257 (737)
                      .                       .+.. ......+..++|+|++ +.|+.++.+     +.|++||+.+++.....   
T Consensus       229 ~-----------------------~l~~-~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~---  280 (396)
T 3c5m_A          229 R-----------------------KIKE-HAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVM---  280 (396)
T ss_dssp             E-----------------------ESSC-CCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEE---
T ss_pred             e-----------------------Eeec-cCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEee---
Confidence            1                       1111 1112357788999984 655555433     44999999876422110   


Q ss_pred             CCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEe----------------CCCeEEEEEcCCCCcceeeeec
Q 004685          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSY----------------SGEHVYLMDVNHAGGRAMRYTV  320 (737)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~----------------~dg~v~iwd~~~~~~~~~~~~~  320 (737)
                              .          ..  ... +.|+| +|++++.++                .+..|++||+.++... .+...
T Consensus       281 --------~----------~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~  338 (396)
T 3c5m_A          281 --------V----------MP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH  338 (396)
T ss_dssp             --------E----------CC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC
T ss_pred             --------e----------CC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC
Confidence                    0          00  123 88999 999888765                3478999999886543 22222


Q ss_pred             CC-----------CCeeeeeccCCCCccCC
Q 004685          321 GD-----------ASKIMSFTPTLNGLELQ  339 (737)
Q Consensus       321 ~~-----------~~~~~~~~p~~~~~~~~  339 (737)
                      ..           .....+|+|+.+.+.+.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  368 (396)
T 3c5m_A          339 STSWDVLDGDRQITHPHPSFTPNDDGVLFT  368 (396)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred             CCccccccccccCCCCCceEccCCCeEEEE
Confidence            22           14456788876655443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.26  E-value=4.9e-10  Score=114.45  Aligned_cols=233  Identities=10%  Similarity=0.044  Sum_probs=148.5

Q ss_pred             ccceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           41 SQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      ..+..+..+.....+++|+|+++ +++++..++.|.+||..++  ...+ ..+...+.+++++|+  +.++++...++.|
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~d--g~l~v~~~~~~~i   92 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQ--GHLIACSHGLRRL   92 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTT--CCEEEEETTTTEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCC--CcEEEEecCCCeE
Confidence            44455666667788999999998 7888888999999999887  4555 456778999999998  6887777777899


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeC-----------------CCcEEEEEcCCCC
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASE-----------------DGTLRQHDFRQGS  181 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~-----------------Dg~I~vwdl~~~~  181 (737)
                      .+||...+....       ...... .....+..++++| +++++++.+.                 .+.|..++.. ++
T Consensus        93 ~~~d~~~g~~~~-------~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~  163 (296)
T 3e5z_A           93 ERQREPGGEWES-------IADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT  163 (296)
T ss_dssp             EEECSTTCCEEE-------EECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC
T ss_pred             EEEcCCCCcEEE-------EeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC
Confidence            999986532110       000011 1123467899999 5577776321                 2344444433 21


Q ss_pred             CCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC-CCCCcccccCCCCC
Q 004685          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSP  260 (737)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~-~~~~~~~~~~~~~~  260 (737)
                                             ...+   ..+......++|+|++ +.+++.+.++.|++||+. .+.....       
T Consensus       164 -----------------------~~~~---~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~-------  209 (296)
T 3e5z_A          164 -----------------------LSAP---IRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ-------  209 (296)
T ss_dssp             -----------------------EEEE---ECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE-------
T ss_pred             -----------------------EEEe---ecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC-------
Confidence                                   0011   1123456889999984 666777888999999987 3321000       


Q ss_pred             CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeee-ccCCCCc
Q 004685          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF-TPTLNGL  336 (737)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~  336 (737)
                         ...+       ..+ ...+..++++++|+++++.  ++.|.+||.. ++.......... +..++| .|+.+.+
T Consensus       210 ---~~~~-------~~~-~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L  271 (296)
T 3e5z_A          210 ---GVHF-------TVE-PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTL  271 (296)
T ss_dssp             ---EEEE-------CCS-SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEE
T ss_pred             ---CeEe-------eCC-CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEE
Confidence               0000       001 1135679999999866555  8899999986 444433333334 777888 4654433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.24  E-value=4.5e-10  Score=129.87  Aligned_cols=234  Identities=10%  Similarity=-0.016  Sum_probs=143.9

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc----
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE----  118 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg-----~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~----  118 (737)
                      +|...+.+++|||||++||.+..++     .|++||+.+++.+... . ....+..++|+|+  ++.|+.++.++.    
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~-~~~~~~~~~wspD--g~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-L-ERVKFSCMAWTHD--GKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-E-EEECSCCEEECTT--SSEEEEEECCCCSSCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-c-cCcccceEEEEeC--CCEEEEEEECCccccc
Confidence            3445688999999999998765543     8999999999876543 1 2233678999999  788888888766    


Q ss_pred             ------------EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC-----CCcEEEEEcCC--
Q 004685          119 ------------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQ--  179 (737)
Q Consensus       119 ------------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-----Dg~I~vwdl~~--  179 (737)
                                  |++|++.+.....      ..+.....|...+..+.|+|++ ++|+.++.     +..|.+||+.+  
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~------~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~  270 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSED------ILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQES  270 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred             cccccccCCCCEEEEEECCCCcccc------eEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccc
Confidence                        9999997643210      0111222345667899999954 55555543     56899999876  


Q ss_pred             ----CCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC-C---CcEEEEECCCCCC-
Q 004685          180 ----GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-D---AFARLYDRRMLPP-  250 (737)
Q Consensus       180 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~-D---g~i~iwd~~~~~~-  250 (737)
                          +...          ...+.              .+...+.. .|+|++ ..|+..+. +   +.|.+||+.+... 
T Consensus       271 ~~~~~~~~----------~~~l~--------------~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~  324 (710)
T 2xdw_A          271 NGITGILK----------WVKLI--------------DNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES  324 (710)
T ss_dssp             SSSCSSCC----------CEEEE--------------CSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred             cccCCccc----------eEEee--------------CCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence                3210          01111              11122222 477865 45544443 3   3699999876531 


Q ss_pred             -cccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCe--EEEEEcCCCCcceeeeecCCCCeee
Q 004685          251 -LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH--VYLMDVNHAGGRAMRYTVGDASKIM  327 (737)
Q Consensus       251 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~  327 (737)
                       ...+                  ..+ .....+..++|++++.++++...++.  |++|++.+++....+......+..+
T Consensus       325 ~~~~l------------------~~~-~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~  385 (710)
T 2xdw_A          325 KWKVL------------------VPE-HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGY  385 (710)
T ss_dssp             GCEEE------------------ECC-CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEE
T ss_pred             cceec------------------cCC-CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEE
Confidence             1111                  001 11114788999988888888888884  6667775665433333333444556


Q ss_pred             eeccCCCCcc
Q 004685          328 SFTPTLNGLE  337 (737)
Q Consensus       328 ~~~p~~~~~~  337 (737)
                      +++|+...+.
T Consensus       386 ~~s~d~~~l~  395 (710)
T 2xdw_A          386 SGQKKDTEIF  395 (710)
T ss_dssp             ECCTTCSEEE
T ss_pred             ecCCCCCEEE
Confidence            6777655443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.19  E-value=4.2e-08  Score=99.77  Aligned_cols=201  Identities=8%  Similarity=0.028  Sum_probs=134.3

Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (737)
Q Consensus        47 ~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~  126 (737)
                      ......+.+|++.++|.++++...++.|.+||.. ++............+.++++.++  +.++++...++.|..||.. 
T Consensus        16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL--GDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT-
T ss_pred             CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC--CCEEEEecCCCeEEEECCC-
Confidence            3445678999999999988887778999999988 55443221233467899999988  6777777668889999876 


Q ss_pred             CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (737)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (737)
                      ....         ..........+.++++.+ ++.++++...++.|..+|.. ++..             .+.       
T Consensus        92 g~~~---------~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~-------------~~~-------  140 (300)
T 2qc5_A           92 GGFT---------EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIY-------------EYD-------  140 (300)
T ss_dssp             SCEE---------EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEE-------------EEE-------
T ss_pred             CCeE---------EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEE-------------Ecc-------
Confidence            2210         111222345688999998 55777777667889999876 3311             000       


Q ss_pred             eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004685          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (737)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  286 (737)
                          .+.....+.+++++++ ++++++...++.|..||. .++... +..                  . .....+..++
T Consensus       141 ----~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~~~------------------~-~~~~~~~~i~  194 (300)
T 2qc5_A          141 ----LPNKGSYPAFITLGSD-NALWFTENQNNSIGRITN-TGKLEE-YPL------------------P-TNAAAPVGIT  194 (300)
T ss_dssp             ----CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE-EEC------------------S-STTCCEEEEE
T ss_pred             ----CCCCCCCceeEEECCC-CCEEEEecCCCeEEEECC-CCcEEE-eeC------------------C-CCCCCcceEE
Confidence                1112346788999997 466666666788999988 433211 100                  0 0111478899


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEc
Q 004685          287 FSPNGEEVLLSYSGEHVYLMDV  308 (737)
Q Consensus       287 ~sp~g~~l~~g~~dg~v~iwd~  308 (737)
                      ++++|..+++....+.|.+|+.
T Consensus       195 ~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          195 SGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             ECTTSSEEEEETTTTEEEEECT
T ss_pred             ECCCCCEEEEccCCCEEEEEcC
Confidence            9999986666666778888886

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.18  E-value=9.1e-10  Score=115.15  Aligned_cols=205  Identities=7%  Similarity=-0.010  Sum_probs=127.3

Q ss_pred             CceEEEEEcCCCCEEEEEeCC---C--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---------
Q 004685           51 GCVNAISWNSKGSLLISGSDD---T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---------  116 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~d---g--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---------  116 (737)
                      ..+.+++|+|||++||.++.+   +  .|.+||+.+++..... . +.. +.+++|+|+  ++.|+.++.+         
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNED--SRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTT--SSEEEEEEECCCC------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCC--CCEEEEEEccCCCcCCcEE
Confidence            468889999999999887654   2  4888899888765544 2 233 999999999  6877777632         


Q ss_pred             ------------------CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC-------c
Q 004685          117 ------------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-------T  171 (737)
Q Consensus       117 ------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg-------~  171 (737)
                                        ..|.+||+..+..          +..+.. . .+..+.|+| ++ +++++..++       .
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~----------~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~  199 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEV----------IEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKF  199 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEE----------EEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCC
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeE----------EeeecC-C-CcccccCCC-Ce-EEEEEeccccccccccc
Confidence                              5688899875321          123333 3 788999999 44 777776542       3


Q ss_pred             EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC--------CcEEEE
Q 004685          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD--------AFARLY  243 (737)
Q Consensus       172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D--------g~i~iw  243 (737)
                      ..+|.+.+++                       ...+..   + ..+..  ++|+ ++.|+.++.+        ..|.+|
T Consensus       200 ~~l~~~d~~~-----------------------~~~l~~---~-~~~~~--~spd-g~~l~~~~~~~~~~~~~~~~l~~~  249 (347)
T 2gop_A          200 WDIYIWEDGK-----------------------EEKMFE---K-VSFYA--VDSD-GERILLYGKPEKKYMSEHNKLYIY  249 (347)
T ss_dssp             EEEEEEETTE-----------------------EEEEEE---E-ESEEE--EEEC-SSCEEEEECCSSSCCCSSCEEEEE
T ss_pred             ccEEEeCCCc-----------------------eEEecc---C-cceee--ECCC-CCEEEEEEccccCCccccceEEEE
Confidence            4555444221                       111111   1 22333  3887 4666666543        367788


Q ss_pred             ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE-EEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCC
Q 004685          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH-VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD  322 (737)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~  322 (737)
                      |  +++.. .+.                   .++ ...+.. +.|+ ++ ++++++.++.+++| +.+++ .........
T Consensus       250 d--~~~~~-~l~-------------------~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-~~~~~~~~~  302 (347)
T 2gop_A          250 D--GKEVM-GIL-------------------DEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-IKPIAKGRH  302 (347)
T ss_dssp             C--SSCEE-ESS-------------------TTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-EEEEECSSS
T ss_pred             C--CCceE-ecc-------------------ccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-eEEEecCCC
Confidence            7  33211 110                   111 124775 8999 88 88899999999999 88543 333333344


Q ss_pred             CCeeeeecc
Q 004685          323 ASKIMSFTP  331 (737)
Q Consensus       323 ~~~~~~~~p  331 (737)
                      .+..++|+|
T Consensus       303 ~v~~~~~s~  311 (347)
T 2gop_A          303 WIMGFDVDE  311 (347)
T ss_dssp             EEEEEEESS
T ss_pred             eEEeeeeeC
Confidence            556677776

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.15  E-value=2.2e-09  Score=124.60  Aligned_cols=65  Identities=12%  Similarity=0.017  Sum_probs=52.3

Q ss_pred             CCCEEEEecCCCcEEEEEcC-cccEEEEeecC-CCceEEEEecCCCCeEE-EE---ecCCcEEEEcCCCCC
Q 004685          638 RGDYIASGSDDGRWFIWEKQ-TGRLIKMLLGD-EAVVNCVQCHPFDCVVA-TS---GIDNTIKIWTPSASV  702 (737)
Q Consensus       638 d~~~l~sgs~D~~i~iWd~~-t~~~~~~l~gH-~~~V~~v~~sp~~~~l~-S~---~~Dg~i~lW~~~~~~  702 (737)
                      ++.++++...|+..+||.++ +|..++.+..+ .+.|..++|+|+++.|+ +.   ...++|++||+.+++
T Consensus       373 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          373 GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            67789999999998888766 57788888764 77899999999987444 33   346799999999887

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.14  E-value=4.3e-09  Score=105.56  Aligned_cols=202  Identities=6%  Similarity=-0.015  Sum_probs=138.7

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      +...+.+|+++++|+++++.. ++.|.+||..+.... .+.......+.++++.|+  +.++++...++.|.+|+.....
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~~~~  140 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKT  140 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTT--CCEEEEEGGGTEEEEECTTCCS
T ss_pred             CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCC--CCEEEEECCCCEEEEEECCCce
Confidence            335678999999999777666 889999998765433 331233367899999998  6888877778899999754321


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                      .          ..........+.++++++ +++++++...++.|.+||.......                        .
T Consensus       141 ~----------~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~------------------------~  185 (270)
T 1rwi_B          141 Q----------TVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQV------------------------V  185 (270)
T ss_dssp             C----------EECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEE------------------------E
T ss_pred             e----------EeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceE------------------------e
Confidence            1          111122334578899999 4577777777889999998765311                        0


Q ss_pred             cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (737)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s  288 (737)
                       ........+.+++++++ +.++++...++.|.+||........ ..                   ..+ ...+.+++++
T Consensus       186 -~~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~-~~-------------------~~~-~~~p~~i~~~  242 (270)
T 1rwi_B          186 -LPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTV-LP-------------------FTG-LNTPLAVAVD  242 (270)
T ss_dssp             -CCCSSCCSEEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEE-CC-------------------CCS-CSCEEEEEEC
T ss_pred             -ecccCCCCceEEEECCC-CCEEEEECCCCcEEEEcCCCCccee-ec-------------------cCC-CCCceeEEEC
Confidence             00111245788999997 4777777778999999986532111 00                   001 1148899999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          289 PNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       289 p~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      |+|+.+++...++.|++|++...+
T Consensus       243 ~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          243 SDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCCEEEEECCCCEEEEEcCCCcc
Confidence            999988888889999999987743

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.13  E-value=1.5e-08  Score=106.73  Aligned_cols=253  Identities=10%  Similarity=0.038  Sum_probs=154.0

Q ss_pred             ccccccccccccccceeecccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEccc------C
Q 004685           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------H   92 (737)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~------h   92 (737)
                      ++.+++  ..+.+.+.++..-..+  .++|+|||++|+.+.          .++.|.+||..+.+.+..+..+      +
T Consensus        48 ~v~v~D--~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~  123 (373)
T 2mad_H           48 QQWVLD--AGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV  123 (373)
T ss_pred             EEEEEE--CCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence            556666  3455666777654444  899999999988875          3678999999998887776322      0


Q ss_pred             ccceEEEEEeeCCCCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCcee-eccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           93 SANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      ......++|+|+  +++|+.+..  ++.|.++| .....          +.. +. ..   .++.+.|.+...+++.+.|
T Consensus       124 g~~p~~~~~spD--G~~l~v~n~~~~~~v~viD-~t~~~----------~~~~i~-~~---~~~~~~~~~~~~~~~~~~d  186 (373)
T 2mad_H          124 GPYSWMNANTPN--NADLLFFQFAAGPAVGLVV-QGGSS----------DDQLLS-SP---TCYHIHPGAPSTFYLLCAQ  186 (373)
T ss_pred             CCCccceEECCC--CCEEEEEecCCCCeEEEEE-CCCCE----------EeEEcC-CC---ceEEEEeCCCceEEEEcCC
Confidence            123458999999  788887764  57899999 75321          222 21 11   1245566566677788889


Q ss_pred             CcEEEEEcCCCCCCCCCC-----CCC----------C----------ccceEEEeccCCceeeccCCC----------CC
Q 004685          170 GTLRQHDFRQGSSCPPAG-----SSH----------Q----------ECRNILLDLRCGAKRSLADPP----------KQ  214 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~-----~~~----------~----------~~~~~~~~~~~~~~~~~~~~~----------~~  214 (737)
                      |.+.++|. +++......     ...          .          .....+++...+....+....          ..
T Consensus       187 g~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~  265 (373)
T 2mad_H          187 GGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR  265 (373)
T ss_pred             CCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccccee
Confidence            99999998 654331000     000          0          001111222111111111000          00


Q ss_pred             ccceEEEEEecCCCcEEEEEeC----------CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685          215 TLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (737)
Q Consensus       215 ~~~v~~i~~sp~~~~~l~t~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (737)
                      ......+.++|++ ..+++...          .+.|.++|+.+++.+..+...                   .   ....
T Consensus       266 p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-------------------~---~p~~  322 (373)
T 2mad_H          266 PGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-------------------H---DVDA  322 (373)
T ss_pred             cCceEeEEECCCC-CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-------------------C---CcCe
Confidence            1223347788875 45555432          357999999988766555321                   1   3678


Q ss_pred             EEEcCCCC-EEEEEe-CCCeEEEEEcCCCCcceeeeecCCCCee
Q 004685          285 VTFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKI  326 (737)
Q Consensus       285 v~~sp~g~-~l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~  326 (737)
                      ++|+|||+ .++++. .++.|.+||+.+++........+..+..
T Consensus       323 i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~  366 (373)
T 2mad_H          323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQV  366 (373)
T ss_pred             EEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcE
Confidence            99999999 788877 4899999999997765553444443333

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.13  E-value=6.1e-09  Score=104.47  Aligned_cols=219  Identities=6%  Similarity=-0.018  Sum_probs=140.1

Q ss_pred             ceEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           52 CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        52 ~V~~l~~s~~g~~la-sgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      ...+|+++++|++++ +...++.|.+||..+..... +...+...+.++++.++  +.++++.. ++.|.+||.....  
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~--g~l~v~~~-~~~i~~~d~~~~~--   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGA--GTVYVTDF-NNRVVTLAAGSNN--   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CCCCSCCSCCCEEECTT--CCEEEEET-TTEEEEECTTCSC--
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-EeeCCcCCcceeEECCC--CCEEEEcC-CCEEEEEeCCCce--
Confidence            678999999999777 54778999999976654332 21233456889999998  67666655 8899999976421  


Q ss_pred             CCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685          131 GLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (737)
Q Consensus       131 ~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (737)
                               ...+. .....+..+++++ ++.++++...++.|.+|+..+....                        . 
T Consensus        99 ---------~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~------------------------~-  143 (270)
T 1rwi_B           99 ---------QTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT------------------------V-  143 (270)
T ss_dssp             ---------CEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCE------------------------E-
T ss_pred             ---------EeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeE------------------------e-
Confidence                     11121 2235688999999 5577777777889999975443211                        0 


Q ss_pred             CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004685          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (737)
Q Consensus       210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  289 (737)
                      ........+.+++++++ ++++++...++.|.+||..........                    .... ..+..+++++
T Consensus       144 ~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~-~~p~~i~~d~  201 (270)
T 1rwi_B          144 LPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVLP--------------------FTDI-TAPWGIAVDE  201 (270)
T ss_dssp             CCCCSCCSCCCEEECTT-CCEEEEEGGGTEEEEECTTTCCEEECC--------------------CSSC-CSEEEEEECT
T ss_pred             eccccCCCceeEEEeCC-CCEEEEECCCCEEEEEecCCCceEeec--------------------ccCC-CCceEEEECC
Confidence            00111234678899996 467777777889999998754321110                    0010 1478899999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004685          290 NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (737)
Q Consensus       290 ~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (737)
                      +|..+++...++.|.+|+................+..+++.|+.
T Consensus       202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g  245 (270)
T 1rwi_B          202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR  245 (270)
T ss_dssp             TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC
T ss_pred             CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC
Confidence            99766666678899999987643222111112345566777654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.12  E-value=7.2e-09  Score=106.46  Aligned_cols=67  Identities=6%  Similarity=0.044  Sum_probs=60.0

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCC-eEEEEecCCcEEEEcCCCC
Q 004685          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSGIDNTIKIWTPSAS  701 (737)
Q Consensus       635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~-~l~S~~~Dg~i~lW~~~~~  701 (737)
                      ++++|+++++...++.|.+||.++++.+..+..+...+.+++|+|+++ ++++...++.|..|++...
T Consensus       233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            789999999988899999999999999999988888999999999998 7777777899999998753

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.12  E-value=1.2e-08  Score=105.79  Aligned_cols=240  Identities=11%  Similarity=-0.014  Sum_probs=153.7

Q ss_pred             ccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCc----cceEEEEEe
Q 004685           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFV  102 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~----~~V~~v~~s  102 (737)
                      .+.|.+++  ..+.+.+.++.. ......|+++++++++++...++.|.+||..+++....+..+..    .....+++ 
T Consensus        63 ~~~v~viD--~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-  138 (328)
T 3dsm_A           63 SHVIFAID--INTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-  138 (328)
T ss_dssp             GTEEEEEE--TTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-
T ss_pred             CCEEEEEE--CcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-
Confidence            46677777  455667677753 45688999999986555555889999999999988877732221    14567777 


Q ss_pred             eCCCCCEEEEEE-CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC----------Cc
Q 004685          103 PETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----------GT  171 (737)
Q Consensus       103 p~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D----------g~  171 (737)
                      ..  +.++++.. .++.|.++|+.+...          ...+.. ......++++| ++++++++..+          +.
T Consensus       139 ~~--~~lyv~~~~~~~~v~viD~~t~~~----------~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~  204 (328)
T 3dsm_A          139 YG--KYVYVNCWSYQNRILKIDTETDKV----------VDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPS  204 (328)
T ss_dssp             ET--TEEEEEECTTCCEEEEEETTTTEE----------EEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCE
T ss_pred             EC--CEEEEEcCCCCCEEEEEECCCCeE----------EEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCce
Confidence            33  44555544 489999999986321          233322 23456789998 55666666544          78


Q ss_pred             EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004685          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (737)
Q Consensus       172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~  251 (737)
                      |.++|..+++..                      ..+.. +. ......++|+|++ +.++++..  .|.+||..+++..
T Consensus       205 v~~id~~t~~v~----------------------~~~~~-~~-g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~  257 (328)
T 3dsm_A          205 LYRIDAETFTVE----------------------KQFKF-KL-GDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVP  257 (328)
T ss_dssp             EEEEETTTTEEE----------------------EEEEC-CT-TCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCC
T ss_pred             EEEEECCCCeEE----------------------EEEec-CC-CCCceeEEEecCC-CEEEEEcc--EEEEEECCCCcee
Confidence            999998876521                      00110 00 1256899999974 56666644  8999999876642


Q ss_pred             ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE-----eCCCeEEEEEcCCCCcceeeeecCCCCee
Q 004685          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-----YSGEHVYLMDVNHAGGRAMRYTVGDASKI  326 (737)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  326 (737)
                      ...            +..     . . ......++++|++..|+++     ..++.|.+||.. ++. ...+..+..+..
T Consensus       258 ~~~------------~~~-----~-~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~-~~~i~~G~~P~~  316 (328)
T 3dsm_A          258 VRP------------FLE-----F-R-DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL-IDEFYVGIIPGA  316 (328)
T ss_dssp             SSC------------SBC-----C-C-SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE-EEEEEEEESEEE
T ss_pred             eee------------eec-----C-C-CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE-EEEEEeccCcce
Confidence            110            000     0 0 1247889999954445555     468899999988 554 444456777777


Q ss_pred             eeeccC
Q 004685          327 MSFTPT  332 (737)
Q Consensus       327 ~~~~p~  332 (737)
                      ++|...
T Consensus       317 ~~~~~~  322 (328)
T 3dsm_A          317 FCWKLE  322 (328)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            777654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.11  E-value=4.7e-10  Score=117.38  Aligned_cols=179  Identities=15%  Similarity=0.087  Sum_probs=128.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-----------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      +++.|++++...++++|+.+ .+++|++....           ....+  .+.. |+.++|  +  +..|+++ .++.|+
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f--d--~~~L~v~-~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF--H--GDQVLVS-TRNALY  109 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE--E--TTEEEEE-ESSEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE--C--CCEEEEE-cCCcEE
Confidence            69999999999999999987 56679875433           11122  3556 999999  5  6889888 889999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      +||+.....          ......|...+.++.+.+.  + +++++.||.|.+||+..+...                 
T Consensus       110 v~dv~sl~~----------~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~-----------------  159 (388)
T 1xip_A          110 SLDLEELSE----------FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTK-----------------  159 (388)
T ss_dssp             EEESSSTTC----------EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEE-----------------
T ss_pred             EEEchhhhc----------cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCccc-----------------
Confidence            999986431          3345567778888887652  3 778899999999999976521                 


Q ss_pred             cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC--cccccCCCCCCCCccccccccccCC-CC
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSEH-GR  277 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~  277 (737)
                                  .....|.+++|+|. +  ++.|..||.+++|+......  ...+..            |..+..+ +|
T Consensus       160 ------------~~~~~Vs~v~WSpk-G--~~vg~~dg~i~~~~~~~~~~~~k~~I~~------------Pp~~~~~~~~  212 (388)
T 1xip_A          160 ------------QLAQNVTSFDVTNS-Q--LAVLLKDRSFQSFAWRNGEMEKQFEFSL------------PSELEELPVE  212 (388)
T ss_dssp             ------------EEEESEEEEEECSS-E--EEEEETTSCEEEEEEETTEEEEEEEECC------------CHHHHTSCTT
T ss_pred             ------------cccCCceEEEEcCC-c--eEEEEcCCcEEEEcCCCccccccceecC------------CcccccccCC
Confidence                        02347899999996 3  68899999999998876542  222210            1111111 12


Q ss_pred             cccceeEEEEcCCCCEEEEE
Q 004685          278 SSLHLTHVTFSPNGEEVLLS  297 (737)
Q Consensus       278 ~~~~i~~v~~sp~g~~l~~g  297 (737)
                       ...|.+|.|.+++.++++=
T Consensus       213 -~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          213 -EYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             -TSEEEEEEESSSSEEEEEE
T ss_pred             -CeeEEEEEEecCCeEEEEE
Confidence             2369999999999988763

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.10  E-value=1.7e-08  Score=111.97  Aligned_cols=225  Identities=12%  Similarity=0.112  Sum_probs=148.9

Q ss_pred             ccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEEcccCccceEEEEEe--
Q 004685           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFV--  102 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~--~~~~~~~~~~~h~~~V~~v~~s--  102 (737)
                      +++|.++|  ..+.+.+.++... ..+..+.|+|||++|++++.|+.|.+||+.  +++.+..+. . ......++|+  
T Consensus       176 ~~~V~viD--~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~-~-G~~P~~ia~s~~  250 (567)
T 1qks_A          176 AGQIALID--GSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK-I-GSEARSIETSKM  250 (567)
T ss_dssp             TTEEEEEE--TTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE-C-CSEEEEEEECCS
T ss_pred             CCeEEEEE--CCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe-c-CCCCceeEEccc
Confidence            45666666  4455666666533 356799999999999999999999999996  788888773 3 3346799999  


Q ss_pred             --eCCCCCEEEEEE-CCCcEEEEecCCCCCCCCCCCCCCCceeecc----------CCC-ceeEEEEecCCCcEEEEEeC
Q 004685          103 --PETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HTR-RVKKLAVEVGNPHVVWSASE  168 (737)
Q Consensus       103 --p~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----------h~~-~v~~l~~~p~~~~~l~s~s~  168 (737)
                        |+  |.+++++. .++.|.++|..+.+          ++..+..          |.. .+..+..++.++.+++....
T Consensus       251 ~~pD--Gk~l~v~n~~~~~v~ViD~~t~~----------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          251 EGWE--DKYAIAGAYWPPQYVIMDGETLE----------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             TTCT--TTEEEEEEEETTEEEEEETTTCC----------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             cCCC--CCEEEEEEccCCeEEEEECCCCc----------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence              68  67666555 56999999977532          2222221          222 67788888877777878888


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004685          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (737)
Q Consensus       169 Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~  248 (737)
                      +|.|.++|.......            .+..        +    ........+.|+|++..+++++..++.|.++|+.++
T Consensus       319 ~g~v~~vd~~~~~~~------------~v~~--------i----~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          319 TGKILLVDYTDLNNL------------KTTE--------I----SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             TTEEEEEETTCSSEE------------EEEE--------E----ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             CCeEEEEecCCCccc------------eeee--------e----eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            899999998764311            0110        0    011345678899985334455557899999999988


Q ss_pred             CCcccccC-CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEE-Ee-CCCeEEEEEcCC
Q 004685          249 PPLTSCQK-RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL-SY-SGEHVYLMDVNH  310 (737)
Q Consensus       249 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~-g~-~dg~v~iwd~~~  310 (737)
                      +.+..+.. ..                ..|.+..+. + ++|++..+.+ +. .++.|.++|..+
T Consensus       375 kl~~~i~vgg~----------------~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          375 KLVAIEDTGGQ----------------TPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEEEECSSS----------------SBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             cEEEEEeccCc----------------CCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            75544321 10                112111132 2 6888555544 43 468999999987

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.06  E-value=7.8e-09  Score=104.16  Aligned_cols=195  Identities=8%  Similarity=0.019  Sum_probs=137.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCc-cceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCC
Q 004685           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (737)
Q Consensus        61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~  139 (737)
                      .+++|++++.|+.|.+||.++++.+..+ ..+. ..+.++.+.|+  |++|+  +.++.|..||. ++.          .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~-~~~~~~~~~~~~~~pd--G~ilv--s~~~~V~~~d~-~G~----------~   67 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEY-PLEKGWECNSVAATKA--GEILF--SYSKGAKMITR-DGR----------E   67 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEE-ECCTTCCCCEEEECTT--SCEEE--ECBSEEEEECT-TSC----------E
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEe-CCCccCCCcCeEECCC--CCEEE--eCCCCEEEECC-CCC----------E
Confidence            4678999999999999999999999998 4554 57899999999  78888  45788999998 322          2


Q ss_pred             ceeeccC-CCceeEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccc
Q 004685          140 SALYQCH-TRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  217 (737)
Q Consensus       140 ~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (737)
                      +..+..+ ...+.++.+.+ +++++++.+. ++.|..+|. .++.              ++......     ....+...
T Consensus        68 ~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~--------------l~~~~~~~-----~~~~~~~~  126 (276)
T 3no2_A           68 LWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEV--------------LSKTEFET-----GIERPHAQ  126 (276)
T ss_dssp             EEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCE--------------EEEEEECC-----SCSSGGGS
T ss_pred             EEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCE--------------EEEEeccC-----CCCccccc
Confidence            4445443 34688889998 6678877776 677777775 3331              11111000     00011123


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE
Q 004685          218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  297 (737)
Q Consensus       218 v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g  297 (737)
                      ...+++.++ ++++++...++.|.+||.. ++.+.++...                      ....++.+.++|..++++
T Consensus       127 ~~~v~~~~~-G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~----------------------~~~~~~~~~~~g~~~v~~  182 (276)
T 3no2_A          127 FRQINKNKK-GNYLVPLFATSEVREIAPN-GQLLNSVKLS----------------------GTPFSSAFLDNGDCLVAC  182 (276)
T ss_dssp             CSCCEECTT-SCEEEEETTTTEEEEECTT-SCEEEEEECS----------------------SCCCEEEECTTSCEEEEC
T ss_pred             ccCceECCC-CCEEEEecCCCEEEEECCC-CCEEEEEECC----------------------CCccceeEcCCCCEEEEe
Confidence            344567776 6899999999999999998 7765544211                      125567889999999999


Q ss_pred             eCCCeEEEEEcCCCCccee
Q 004685          298 YSGEHVYLMDVNHAGGRAM  316 (737)
Q Consensus       298 ~~dg~v~iwd~~~~~~~~~  316 (737)
                      ..++.|..+|..+++..-.
T Consensus       183 ~~~~~v~~~d~~tG~~~w~  201 (276)
T 3no2_A          183 GDAHCFVQLNLESNRIVRR  201 (276)
T ss_dssp             BTTSEEEEECTTTCCEEEE
T ss_pred             CCCCeEEEEeCcCCcEEEE
Confidence            8888999999998765433

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.06  E-value=1.2e-08  Score=102.87  Aligned_cols=228  Identities=11%  Similarity=0.115  Sum_probs=155.8

Q ss_pred             CCcccccccccccccccccceeecccC-CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s  102 (737)
                      .+.++.|.+++  ..+.+.+.++..+. ..+.++.++|+|++|+  +.++.|..||. +++.+..+.......+.++.+.
T Consensus        11 ~~~~~~v~~~d--~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~   85 (276)
T 3no2_A           11 GSGWNKIAIIN--KDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARIL   85 (276)
T ss_dssp             CTTCSEEEEEE--TTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEEC
T ss_pred             eCCCCEEEEEE--CCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEEC
Confidence            45678888888  44667777887765 5789999999999988  34778999999 8899988843334578899999


Q ss_pred             eCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCCCceeec------cCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004685          103 PETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (737)
Q Consensus       103 p~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw  175 (737)
                      |+  |.++++.+. ++.|..+|..   +..        +..+.      .+......+++.+ +++++++...++.|..|
T Consensus        86 ~d--G~~lv~~~~~~~~v~~vd~~---Gk~--------l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~  151 (276)
T 3no2_A           86 PD--GNALVAWCGHPSTILEVNMK---GEV--------LSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREI  151 (276)
T ss_dssp             TT--SCEEEEEESTTEEEEEECTT---SCE--------EEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEE
T ss_pred             CC--CCEEEEecCCCCEEEEEeCC---CCE--------EEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEE
Confidence            99  799998887 7777777653   211        22211      1222345567777 66899999999999999


Q ss_pred             EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (737)
Q Consensus       176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~  255 (737)
                      |.. ++              .+|....+            ....++.+.++ ++++++++.+++|..+|..+++.+.++.
T Consensus       152 d~~-G~--------------~~w~~~~~------------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          152 APN-GQ--------------LLNSVKLS------------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             CTT-SC--------------EEEEEECS------------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             CCC-CC--------------EEEEEECC------------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            987 65              23332221            23445677775 5788888888899999999888765553


Q ss_pred             CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC--------CeEEEEEcCCCCc
Q 004685          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--------EHVYLMDVNHAGG  313 (737)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d--------g~v~iwd~~~~~~  313 (737)
                      ....               .+..-..+..++..++|..+++....        +..+++++...+.
T Consensus       204 ~~~~---------------~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~  254 (276)
T 3no2_A          204 ANDI---------------EGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGK  254 (276)
T ss_dssp             GGGS---------------BSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSB
T ss_pred             CCCC---------------CCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCC
Confidence            1100               00011137888999999988777421        2446666644333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.06  E-value=7.5e-08  Score=100.28  Aligned_cols=194  Identities=12%  Similarity=0.079  Sum_probs=120.6

Q ss_pred             EEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE----------CCCcEE
Q 004685           56 ISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVR  120 (737)
Q Consensus        56 l~~s~~g~~lasgs~-----dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs----------~dg~I~  120 (737)
                      ....|+++.++....     ++.|.++|..+++.+..+. ....+ . ++++|+  +.+++.+.          .++.|.
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-vG~~P-~-va~spD--G~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-GGFLP-N-PVVADD--GSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-ECSSC-E-EEECTT--SSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-CCCCC-c-EEECCC--CCEEEEEcccccccccCCCCCEEE
Confidence            445689988887765     6799999999999999884 33344 4 999999  57665554          367899


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccC-------CCceeEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCCCCCC
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQ  191 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~~l~s~s~--Dg~I~vwdl~~~~~~~~~~~~~~  191 (737)
                      +||..+...          +..+.-.       ......++|+|++ ++++++..  ++.|.++|+.+.+.+        
T Consensus       113 viD~~t~~v----------~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~~~~~~VsVID~~t~~vv--------  173 (386)
T 3sjl_D          113 VFDPVTLLP----------TADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFK--------  173 (386)
T ss_dssp             EECTTTCCE----------EEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEE--------
T ss_pred             EEECCCCeE----------EEEEECCCccccccCCCCceEEEcCCC-CEEEEEEcCCCCeEEEEECCCCcEE--------
Confidence            999986332          3333211       1245679999955 65555543  689999999988632        


Q ss_pred             ccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCccccccc
Q 004685          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPM  270 (737)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  270 (737)
                                    ..+. .++      +..+.|.+...+++.+.||.+.+.++.. ++......         ..+.+ 
T Consensus       174 --------------~tI~-v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~---------~~~~~-  222 (386)
T 3sjl_D          174 --------------RMLD-VPD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT---------EVFHP-  222 (386)
T ss_dssp             --------------EEEE-CCS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC---------CCCSC-
T ss_pred             --------------EEEE-CCC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec---------ceecc-
Confidence                          0110 000      1122344456777888899999999876 43211000         00000 


Q ss_pred             cccCCCCcccceeEEEEc-CCCCEEEEEeCCCeEEEEEcCCC
Q 004685          271 HLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       271 ~~~~~~~~~~~i~~v~~s-p~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                            ....-.....|. ++|++++ .+.+|.|++.|+.+.
T Consensus       223 ------~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~  257 (386)
T 3sjl_D          223 ------EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG  257 (386)
T ss_dssp             ------TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred             ------ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence                  000011224664 6886555 555889999998764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.03  E-value=6e-08  Score=102.89  Aligned_cols=191  Identities=11%  Similarity=0.025  Sum_probs=118.8

Q ss_pred             CCCCEEEEEeC-C----CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE----------CCCcEEEEec
Q 004685           60 SKGSLLISGSD-D----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL  124 (737)
Q Consensus        60 ~~g~~lasgs~-d----g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs----------~dg~I~iwd~  124 (737)
                      +++++++.... +    +.|.++|..+++.+..+.. ...+  .++++|+  ++.|+.+.          .++.|.++|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-G~~P--gia~SpD--gk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-GFLP--HPVAAED--GSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-CSSC--EEEECTT--SSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-CCCC--ceEECCC--CCEEEEEeccccccccCCCCCEEEEEEC
Confidence            46776665544 2    6999999999999999843 3345  8999999  56665554          4678999999


Q ss_pred             CCCCCCCCCCCCCCCceeecc-------CCCceeEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          125 SRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~--Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      .+...          +..+.-       .......+.|+|+ +++++++..  ++.|.+.|+.+.+.+            
T Consensus       157 ~t~~v----------v~~I~v~g~~r~~~g~~P~~~~~spD-Gk~lyV~n~~~~~~VsVID~~t~kvv------------  213 (426)
T 3c75_H          157 VTFLP----------IADIELPDAPRFLVGTYQWMNALTPD-NKNLLFYQFSPAPAVGVVDLEGKTFD------------  213 (426)
T ss_dssp             TTCCE----------EEEEEETTCCCCCBSCCGGGSEECTT-SSEEEEEECSSSCEEEEEETTTTEEE------------
T ss_pred             CCCcE----------EEEEECCCccccccCCCcceEEEcCC-CCEEEEEecCCCCeEEEEECCCCeEE------------
Confidence            86432          222221       1133467899995 566666653  578999999987632            


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                        .        .+.. +    .  +....|.+...+++.+.||.+.+.+..+++......         ..+.      .
T Consensus       214 --~--------~I~v-~----g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~---------~~~~------v  261 (426)
T 3c75_H          214 --R--------MLDV-P----D--CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT---------EVFH------T  261 (426)
T ss_dssp             --E--------EEEC-C----S--EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---------CCCS------C
T ss_pred             --E--------EEEc-C----C--ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---------eeec------c
Confidence              0        0100 0    0  123344434567777788888888885443221100         0000      0


Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +... ....+.|.+++..++..+..+.|.+.|+...
T Consensus       262 ~~~p-~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~  296 (426)
T 3c75_H          262 EDEL-LINHPAFSLRSGRLVWPTYTGKIFQADLTAE  296 (426)
T ss_dssp             TTSC-BCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred             CCCc-eeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence            0000 1223578999998888888899999998763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.00  E-value=4.1e-08  Score=102.48  Aligned_cols=183  Identities=14%  Similarity=0.090  Sum_probs=113.2

Q ss_pred             CceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEEc------ccCccceEEEEEeeCCCCCEEEEEEC-----CC
Q 004685           51 GCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIE------TGHSANVFCTKFVPETSDELVVSGAG-----DA  117 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs--~dg~V~vwd~~~~~~~~~~~------~~h~~~V~~v~~sp~~~~~~l~sgs~-----dg  117 (737)
                      ..+..++++++|+++++..  .++.++||.+.+++. ..+.      ..+-..+.++++.++  +.++++-..     ++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~--g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGN--GIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSS--SEEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCC--CcEEEEcCCCCcCCCC
Confidence            6789999999999988864  234355665545543 3221      124467999999998  566665433     57


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeec------cCCCceeEEEEecCCCcEEEEEe---CCCcEEEEEcCCCCCCCCCCC
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGS  188 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~s~s---~Dg~I~vwdl~~~~~~~~~~~  188 (737)
                      .|.+||+.+...          +..+.      .+...+..++++++++..+++..   .++.|.+||+.+++..     
T Consensus        94 ~i~~~d~~tg~~----------~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~-----  158 (343)
T 2qe8_A           94 KLVAWDTLNNQL----------SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA-----  158 (343)
T ss_dssp             EEEEEETTTTEE----------EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE-----
T ss_pred             eEEEEECCCCeE----------EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE-----
Confidence            899999875321          11111      22345689999985556666665   6789999999876521     


Q ss_pred             CCCccceEEEeccCCceeeccCCCCCccc-eEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685          189 SHQECRNILLDLRCGAKRSLADPPKQTLS-LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (737)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (737)
                                        .+.  ..|... .....+.++ +..+.+.+.++.++.|..                      
T Consensus       159 ------------------r~~--~~~~~~~~~~~~~~~~-g~~~~~~~~~g~~~~~~~----------------------  195 (343)
T 2qe8_A          159 ------------------RVL--QGYPGIAPEDIDLVID-GVPVQIGQPDGTVIRPHL----------------------  195 (343)
T ss_dssp             ------------------EEC--TTCTTTSCCSCCCEET-TEECBEECTTSCEECCCC----------------------
T ss_pred             ------------------EEe--cCCCcccccccceeEC-CEEEEeccCCCceeceec----------------------
Confidence                              000  000000 000223333 456666777777765531                      


Q ss_pred             ccccccCCCCcccceeEEEEcCCCCEEEEEeCCC-eEEEEE
Q 004685          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-HVYLMD  307 (737)
Q Consensus       268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg-~v~iwd  307 (737)
                                   .+..++|+|+|++|+.+...+ .++.++
T Consensus       196 -------------~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          196 -------------GVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             -------------CEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             -------------ccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence                         267899999999998887765 444433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.99  E-value=3.3e-07  Score=93.37  Aligned_cols=55  Identities=11%  Similarity=0.064  Sum_probs=48.3

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEec-CCCC-eEEEEec
Q 004685          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCH-PFDC-VVATSGI  689 (737)
Q Consensus       635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~s-p~~~-~l~S~~~  689 (737)
                      ++++|++.++....+.|.+||.++|+++..+..+...+++++|. |+++ +++|...
T Consensus       206 ~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          206 IDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             ECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            78999999988888999999999999999999998899999999 8876 5555554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.99  E-value=5.7e-08  Score=99.68  Aligned_cols=234  Identities=8%  Similarity=0.035  Sum_probs=141.4

Q ss_pred             cccCCceEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCeEEEEEc---ccCccceEEEEEeeCCCCCEEEEEECC
Q 004685           47 EGHQGCVNAISWNSKGSLLIS-------GSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGD  116 (737)
Q Consensus        47 ~~H~~~V~~l~~s~~g~~las-------gs~dg~V~vwd~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~~l~sgs~d  116 (737)
                      .+.-....+++|++++.++++       +..++.|.+||..+++......   .++...+.+++++++.  ..|..+...
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--g~l~v~~~~   91 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA--NQLFVADMR   91 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS--SEEEEEETT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCC--CcEEEEECC
Confidence            333446689999999998888       5778899999988877543221   1245678999999872  344444445


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCCc-eee--ccCCCceeEEEEecCCCcEEEEEeCC---------------CcEEEEEcC
Q 004685          117 AEVRLFNLSRFSGRGLDDNAITPS-ALY--QCHTRRVKKLAVEVGNPHVVWSASED---------------GTLRQHDFR  178 (737)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~-~~~--~~h~~~v~~l~~~p~~~~~l~s~s~D---------------g~I~vwdl~  178 (737)
                      +.|.+||.. .....        + ...  ......+.++++++ +++++++...+               +.|..||..
T Consensus        92 ~~l~~~d~~-g~~~~--------~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEE--------IAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD  161 (314)
T ss_dssp             TEEEEEETT-SCEEE--------CCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred             CCEEEEeCC-CCEEE--------EEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC
Confidence            578889876 32110        0 000  01224578999999 55777666554               456666543


Q ss_pred             CCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEe----cCCCcEEEEEeCCCcEEEEECC-CCCCccc
Q 004685          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHLLLVGGSDAFARLYDRR-MLPPLTS  253 (737)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s----p~~~~~l~t~s~Dg~i~iwd~~-~~~~~~~  253 (737)
                       ++..            .+.              ........++|+    |++..++++...++.|.+||+. .+.....
T Consensus       162 -g~~~------------~~~--------------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~  214 (314)
T 1pjx_A          162 -GQMI------------QVD--------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK  214 (314)
T ss_dssp             -SCEE------------EEE--------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred             -CCEE------------Eec--------------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc
Confidence             2200            000              011245788999    8742344555678999999976 2221000


Q ss_pred             ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004685          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (737)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (737)
                                 ..+  ..+  .++....+..++++++|.++++...++.|.+||..+++...........+..++|+|+.
T Consensus       215 -----------~~~--~~~--~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg  279 (314)
T 1pjx_A          215 -----------KVW--GHI--PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQT  279 (314)
T ss_dssp             -----------EEE--EEC--CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTS
T ss_pred             -----------eEE--EEC--CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCC
Confidence                       000  000  01110137789999999988888788999999988665444443344566777887765


Q ss_pred             C
Q 004685          334 N  334 (737)
Q Consensus       334 ~  334 (737)
                      +
T Consensus       280 ~  280 (314)
T 1pjx_A          280 K  280 (314)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.96  E-value=2.2e-07  Score=96.77  Aligned_cols=262  Identities=11%  Similarity=0.079  Sum_probs=157.9

Q ss_pred             cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEcccC-----
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGH-----   92 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~h-----   92 (737)
                      +++.+.|  ..+.+.+.++..-..+ . ++++|||++|+.+.          .++.|.+||..+++.+..+..+.     
T Consensus        59 ~~V~ViD--~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~  134 (386)
T 3sjl_D           59 TQQFVID--GEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL  134 (386)
T ss_dssp             EEEEEEE--TTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred             CEEEEEE--CCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence            4566666  4566677777654555 4 99999999887665          36789999999999888873221     


Q ss_pred             -ccceEEEEEeeCCCCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           93 -SANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        93 -~~~V~~v~~sp~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                       ......++|+|+  |.+++.+..  ++.|.++|+.+..-          +..+.- .+   |..+.|.+.+.+++.+.|
T Consensus       135 ~g~~P~~~a~spD--Gk~lyVan~~~~~~VsVID~~t~~v----------v~tI~v-~g---~~~~~P~g~~~~~~~~~D  198 (386)
T 3sjl_D          135 VGTYPWMTSLTPD--GKTLLFYQFSPAPAVGVVDLEGKAF----------KRMLDV-PD---CYHIFPTAPDTFFMHCRD  198 (386)
T ss_dssp             BSCCGGGEEECTT--SSEEEEEECSSSCEEEEEETTTTEE----------EEEEEC-CS---EEEEEEEETTEEEEEETT
T ss_pred             cCCCCceEEEcCC--CCEEEEEEcCCCCeEEEEECCCCcE----------EEEEEC-CC---cceeecCCCceeEEECCC
Confidence             124567999999  688777764  68999999986321          333321 11   122234355666677888


Q ss_pred             CcEEEEEcCC-CCCC---CCCC-------CCCC----ccceEEEeccCCceeeccCCCC--------------------C
Q 004685          170 GTLRQHDFRQ-GSSC---PPAG-------SSHQ----ECRNILLDLRCGAKRSLADPPK--------------------Q  214 (737)
Q Consensus       170 g~I~vwdl~~-~~~~---~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~--------------------~  214 (737)
                      |++.+.++.. ++..   ....       ..+.    .....+|....+.+..+.....                    .
T Consensus       199 G~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~  278 (386)
T 3sjl_D          199 GSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR  278 (386)
T ss_dssp             SCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred             CCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence            8888888875 3321   0000       0000    0112222222222211111000                    0


Q ss_pred             ccceEEEEEecCCCcEEEEEeC---------CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004685          215 TLSLKSCDISSTRPHLLLVGGS---------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (737)
Q Consensus       215 ~~~v~~i~~sp~~~~~l~t~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  285 (737)
                      ......++++++...++++-..         .+.|.++|+.+++.+..+..                      +..+..|
T Consensus       279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----------------------g~~~~~l  336 (386)
T 3sjl_D          279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----------------------GHEIDSI  336 (386)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECEE
T ss_pred             CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----------------------CCCcceE
Confidence            1123347778875444443321         25799999999887665531                      1147889


Q ss_pred             EEcCCCC-EEEEEeC-CCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685          286 TFSPNGE-EVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       286 ~~sp~g~-~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (737)
                      +++||++ +|+++.. ++.|.++|..+++...... .....+.+.++++
T Consensus       337 avs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~-~~~~p~~l~~s~d  384 (386)
T 3sjl_D          337 NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN-QLGHGPQVITTAD  384 (386)
T ss_dssp             EECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC-CCCSSCCEEEECC
T ss_pred             EECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec-CCCCCceeEECCc
Confidence            9999997 7777655 8999999999976544444 3444455566654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.94  E-value=3.6e-07  Score=92.68  Aligned_cols=199  Identities=6%  Similarity=0.002  Sum_probs=134.9

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                      +...+.+|+++++|.++++...++.|..||.. ++. ..+. ......+.++++.++  +.++++...++.|..||.. .
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~d~~-g  129 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPN--GDIWFTEMNGNRIGRITDD-G  129 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT-C
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCC--CCEEEEecCCceEEEECCC-C
Confidence            45679999999999988887778899999986 332 2221 234567899999998  6888877778899999873 2


Q ss_pred             CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                      ...         ..........+..+++++ ++.++++...++.|..||. +++..                       .
T Consensus       130 ~~~---------~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~-----------------------~  175 (299)
T 2z2n_A          130 KIR---------EYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDIT-----------------------E  175 (299)
T ss_dssp             CEE---------EEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEE-----------------------E
T ss_pred             CEE---------EecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEE-----------------------E
Confidence            110         111222345688999998 4577777767789999998 44311                       0


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                      + ..+.....+.+++++++ +.++++...++.|.+||. ++... .+..                  ... ...+.++++
T Consensus       176 ~-~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~-~~~~------------------~~~-~~~~~~i~~  232 (299)
T 2z2n_A          176 F-KIPTPASGPVGITKGND-DALWFVEIIGNKIGRITT-SGEIT-EFKI------------------PTP-NARPHAITA  232 (299)
T ss_dssp             E-ECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEE-EEEC------------------SST-TCCEEEEEE
T ss_pred             e-eCCCCCCcceeEEECCC-CCEEEEccCCceEEEECC-CCcEE-EEEC------------------CCC-CCCceeEEE
Confidence            0 01112345778999997 567766667889999998 54321 1100                  001 114889999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcC
Q 004685          288 SPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       288 sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      +++|..+++...++.|.+||..
T Consensus       233 ~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          233 GAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             CSTTCEEEEETTTTEEEEEETT
T ss_pred             CCCCCEEEeccCCceEEEECCC
Confidence            9999966665578899999983

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.93  E-value=1.7e-07  Score=100.07  Aligned_cols=217  Identities=8%  Similarity=0.007  Sum_probs=137.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC--cEEEEecCCCC
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFS  128 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg--~I~iwd~~~~~  128 (737)
                      .....|+|+++++++++...++.|++||..++...... ... .... ++|+|+  +..|+++..++  .|.+|+.....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~-~~~~-ia~~~~--g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PGF-KGGK-PAVTKD--KQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ETC-CBCB-CEECTT--SSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-ccC-CCCc-eeEecC--CCcEEEEecCCCceEEEEEcCCCc
Confidence            36789999999998888888899999999988766554 332 2333 999999  68888887765  78888876421


Q ss_pred             CCCCCCCCCCCceee---cc-CCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685          129 GRGLDDNAITPSALY---QC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~---~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (737)
                      .          ...+   .. ....+.+++++|+++.+++ +..++.|..||...+...            .+....   
T Consensus       206 ~----------~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~------------~~~~~~---  259 (409)
T 3hrp_A          206 A----------PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT------------LIKQLE---  259 (409)
T ss_dssp             C----------EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE------------EEEECC---
T ss_pred             e----------eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE------------EEeccc---
Confidence            1          1122   12 4456788999996555554 677889999998765411            110000   


Q ss_pred             eeeccCCCCCccc--eEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685          205 KRSLADPPKQTLS--LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (737)
Q Consensus       205 ~~~~~~~~~~~~~--v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  282 (737)
                            .......  ...++|+|+++.++++-..++.|+.|+....  +..+.......    .+... .... ..-...
T Consensus       260 ------~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~----g~~dg-~~~~-~~~~~P  325 (409)
T 3hrp_A          260 ------LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQK----TVQDG-LREE-ALFAQP  325 (409)
T ss_dssp             ------CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCC----SCBCE-EGGG-CBCSSE
T ss_pred             ------ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCC----CcCCC-cccc-cEeCCC
Confidence                  0001111  1289999965677777778899999987643  21111110000    00000 0000 001137


Q ss_pred             eEEEEcCCCCEEEEEe-CCCeEEEEEcCCCC
Q 004685          283 THVTFSPNGEEVLLSY-SGEHVYLMDVNHAG  312 (737)
Q Consensus       283 ~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~  312 (737)
                      ..++++|+|.++++-. .++.|+.|++.++.
T Consensus       326 ~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          326 NGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             EEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             eEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            7899999999777777 78999999987654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.92  E-value=4e-07  Score=97.23  Aligned_cols=164  Identities=14%  Similarity=0.079  Sum_probs=98.0

Q ss_pred             cceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC--c
Q 004685           94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--T  171 (737)
Q Consensus        94 ~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg--~  171 (737)
                      .....|+|+++  +.++++...++.|++||.....           +..+........ ++|++ +++.|+++..++  .
T Consensus       131 ~~P~~la~d~~--g~lyv~d~~~~~I~~id~~~g~-----------~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~  195 (409)
T 3hrp_A          131 KYMWGIAAVGN--NTVLAYQRDDPRVRLISVDDNK-----------VTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHT  195 (409)
T ss_dssp             CCEEEEEECST--TEEEEEETTTTEEEEEETTTTE-----------EEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCE
T ss_pred             CCceEEEEeCC--CCEEEEecCCCcEEEEECCCCE-----------EEEeeccCCCCc-eeEec-CCCcEEEEecCCCce
Confidence            35789999998  6777777778999999987532           222222233344 99999 456777777765  7


Q ss_pred             EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004685          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (737)
Q Consensus       172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~  251 (737)
                      |.+|+.......           ..+-.        +  .......+.+++++|+++. |+++..++.|+.||...... 
T Consensus       196 I~~~d~~~~~~~-----------~~~g~--------~--~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~-  252 (409)
T 3hrp_A          196 VYVYMKASGWAP-----------TRIGQ--------L--GSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEV-  252 (409)
T ss_dssp             EEEEEGGGTTCE-----------EEEEE--------C--CTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCE-
T ss_pred             EEEEEcCCCcee-----------EEeee--------c--cchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCE-
Confidence            888887654311           00000        0  0112345678899996554 44477788999999986541 


Q ss_pred             ccccCCCCCCCCccccccccccCCCCccc-ceeEEEEcCCCCEEEEE-eCCCeEEEEEcCC
Q 004685          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSL-HLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH  310 (737)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~v~~sp~g~~l~~g-~~dg~v~iwd~~~  310 (737)
                      ..+...             ..  .+.... +...++|+|++..|+.+ ..++.|+.|+...
T Consensus       253 ~~~~~~-------------~~--~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g  298 (409)
T 3hrp_A          253 TLIKQL-------------EL--SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG  298 (409)
T ss_dssp             EEEEEC-------------CC--CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             EEEecc-------------cc--cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence            111000             00  011110 12389999964445544 5578899998654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.92  E-value=5.6e-08  Score=103.12  Aligned_cols=256  Identities=11%  Similarity=0.075  Sum_probs=154.9

Q ss_pred             cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEccc------
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------   91 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~------   91 (737)
                      +.|.+.|  ..+.+.+.++.--..+  .|+++|||++|+.+.          .++.|.++|..+++.+..+..+      
T Consensus        99 ~~VsVID--~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~  174 (426)
T 3c75_H           99 TQQFVID--GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL  174 (426)
T ss_dssp             EEEEEEE--TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred             CeEEEEE--CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence            6777777  5566777777644455  899999999887775          4678999999999988877322      


Q ss_pred             CccceEEEEEeeCCCCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           92 HSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        92 h~~~V~~v~~sp~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      .......++|+|+  +.+++.+..  ++.|.+.|+.+...          +..+.- ..   +....|.+...+++.+.|
T Consensus       175 ~g~~P~~~~~spD--Gk~lyV~n~~~~~~VsVID~~t~kv----------v~~I~v-~g---~~~~~p~g~~~~v~~~~d  238 (426)
T 3c75_H          175 VGTYQWMNALTPD--NKNLLFYQFSPAPAVGVVDLEGKTF----------DRMLDV-PD---CYHIFPASPTVFYMNCRD  238 (426)
T ss_dssp             BSCCGGGSEECTT--SSEEEEEECSSSCEEEEEETTTTEE----------EEEEEC-CS---EEEEEEEETTEEEEEETT
T ss_pred             cCCCcceEEEcCC--CCEEEEEecCCCCeEEEEECCCCeE----------EEEEEc-CC---ceeeccCCCcEEEEEcCC
Confidence            1234567899999  788887764  58899999986321          223221 11   123334344556666677


Q ss_pred             CcEEEEEcCCCCCCC------CCCC------C--CCccc----------eEEEeccCCceeeccCCC-----C-----Cc
Q 004685          170 GTLRQHDFRQGSSCP------PAGS------S--HQECR----------NILLDLRCGAKRSLADPP-----K-----QT  215 (737)
Q Consensus       170 g~I~vwdl~~~~~~~------~~~~------~--~~~~~----------~~~~~~~~~~~~~~~~~~-----~-----~~  215 (737)
                      |.+.+.++..++...      ....      .  .....          ..+++...+....+....     .     ..
T Consensus       239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p  318 (426)
T 3c75_H          239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP  318 (426)
T ss_dssp             SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred             CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence            777777774332210      0000      0  01111          122222221111111000     0     01


Q ss_pred             cceEEEEEecCCCcEEEEEe---------CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004685          216 LSLKSCDISSTRPHLLLVGG---------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (737)
Q Consensus       216 ~~v~~i~~sp~~~~~l~t~s---------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  286 (737)
                      .....++++|++..++++..         .++.|.++|+.+.+.+..+...                      .....++
T Consensus       319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----------------------~~P~gia  376 (426)
T 3c75_H          319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG----------------------HEIDSIN  376 (426)
T ss_dssp             CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----------------------EEECEEE
T ss_pred             CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC----------------------CCcCeEE
Confidence            11223689998544444432         1357999999998876665311                      1377899


Q ss_pred             EcCCCC-EEEEEeC-CCeEEEEEcCCCCcceeeeecCCCCe
Q 004685          287 FSPNGE-EVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASK  325 (737)
Q Consensus       287 ~sp~g~-~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~  325 (737)
                      |+|||+ +++++.. ++.|.++|+.+.+........+....
T Consensus       377 ~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P~  417 (426)
T 3c75_H          377 VSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGPQ  417 (426)
T ss_dssp             ECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSCC
T ss_pred             EccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCCc
Confidence            999999 8888884 89999999999876555434444444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.89  E-value=3.6e-07  Score=93.08  Aligned_cols=234  Identities=12%  Similarity=0.076  Sum_probs=143.5

Q ss_pred             ecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           46 LEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        46 l~~H~~~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      +..+..-..+..|+++ +.++++...++.|..||..+++.. .+  .....+.+++++|+  +.++++ . +..|.+||.
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~d--G~l~v~-~-~~~l~~~d~   80 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQS--GGYVAT-I-GTKFCALNW   80 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTT--SSEEEE-E-TTEEEEEET
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCC--CCEEEE-E-CCeEEEEEC
Confidence            3334445668899995 556777778899999999887653 33  24567999999999  675554 4 567999998


Q ss_pred             CCCCCCCCCCCCCCCceeec--cCCCceeEEEEecCCCcEEEEEeCC---------CcEEEEEcCCCCCCCCCCCCCCcc
Q 004685          125 SRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASED---------GTLRQHDFRQGSSCPPAGSSHQEC  193 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~D---------g~I~vwdl~~~~~~~~~~~~~~~~  193 (737)
                      ......        .+....  .....+..++++| +++++++...+         ....+|.+......          
T Consensus        81 ~~g~~~--------~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~----------  141 (297)
T 3g4e_A           81 KEQSAV--------VLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV----------  141 (297)
T ss_dssp             TTTEEE--------EEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE----------
T ss_pred             CCCcEE--------EEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE----------
Confidence            753211        111111  1124578899999 45666544221         23345544432110          


Q ss_pred             ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC--CCCCcccccCCCCCCCCcccccccc
Q 004685          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCPMH  271 (737)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~  271 (737)
                       ..+.              ......+.++|+|++..++++.+.++.|.+||+.  ++.....           +.+.  .
T Consensus       142 -~~~~--------------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~-----------~~~~--~  193 (297)
T 3g4e_A          142 -KKYF--------------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR-----------RSVY--K  193 (297)
T ss_dssp             -EEEE--------------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE-----------EEEE--E
T ss_pred             -EEEe--------------eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc-----------EEEE--E
Confidence             0000              0123457899999854455666778999999974  3321000           0000  0


Q ss_pred             ccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeec-cCCCCc
Q 004685          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNGL  336 (737)
Q Consensus       272 ~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~  336 (737)
                      +   .........++++++|.+.++....+.|.+||..+++...........+..++|. |+.+.+
T Consensus       194 ~---~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L  256 (297)
T 3g4e_A          194 L---EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEM  256 (297)
T ss_dssp             C---CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEE
T ss_pred             C---CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEE
Confidence            0   0011146789999999887777778899999999877655555555677888997 765544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.84  E-value=1.4e-06  Score=88.34  Aligned_cols=201  Identities=6%  Similarity=-0.033  Sum_probs=133.9

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                      .+...+.+|++.+++.++++...++.|.+||.. ++............+.++++.++  +.++++...++.|..|+.. .
T Consensus        59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g  134 (300)
T 2qc5_A           59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN--GDIWFTQLNGDRIGKLTAD-G  134 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST--TCEEEEETTTTEEEEECTT-S
T ss_pred             CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC--CCEEEEccCCCeEEEECCC-C
Confidence            344678999999999988877778899999988 55432221224467899999988  6888877768889999876 2


Q ss_pred             CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                      ...         ...+......+.++++.+ +++++++...++.|..+|. .++..             .+.        
T Consensus       135 ~~~---------~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~-------------~~~--------  182 (300)
T 2qc5_A          135 TIY---------EYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLE-------------EYP--------  182 (300)
T ss_dssp             CEE---------EEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEE-------------EEE--------
T ss_pred             CEE---------EccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEE-------------Eee--------
Confidence            210         111222345688999998 4567766666788999987 33311             000        


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                         .+.....+.+++++++ ++++++....+.|.+||. ++.... +.                .  ... ...+.++++
T Consensus       183 ---~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~~----------------~--~~~-~~~~~~i~~  237 (300)
T 2qc5_A          183 ---LPTNAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEISE-YD----------------I--PTP-NARPHAITA  237 (300)
T ss_dssp             ---CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE-EE----------------C--SST-TCCEEEEEE
T ss_pred             ---CCCCCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEEE-EE----------------C--CCC-CCCceEEEE
Confidence               1122346788999986 567776666778999998 332111 10                0  001 114789999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcC
Q 004685          288 SPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       288 sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      +++|...++...++.|..||..
T Consensus       238 d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          238 GKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             CSTTCEEEEETTTTEEEEECTT
T ss_pred             CCCCCEEEeccCCCeEEEECCC
Confidence            9999966666667899999983

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.82  E-value=1.1e-07  Score=99.29  Aligned_cols=257  Identities=9%  Similarity=-0.002  Sum_probs=150.9

Q ss_pred             ccccccccccccccceeecccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEccc-C-----
Q 004685           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG-H-----   92 (737)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~-h-----   92 (737)
                      ++.+.|  ..+.+.+.++.--..+  .+.++||+++++.+.          .++.|.+||..+++.+..+..+ .     
T Consensus        47 ~vsvID--~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~  122 (368)
T 1mda_H           47 ENWVSC--AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEEE--TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             eEEEEE--CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence            555666  5667777888755556  799999999888875          3688999999999999888322 0     


Q ss_pred             ccceEEEEEeeCCCCCEEEEEEC--CCcEEE--EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC
Q 004685           93 SANVFCTKFVPETSDELVVSGAG--DAEVRL--FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE  168 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~--dg~I~i--wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  168 (737)
                      ......++++|+  |.+++.+..  +..|.+  +|..+             +..+.. ...   +.+.|++...+++.+.
T Consensus       123 g~~P~~ia~SpD--Gk~lyVan~~~~~~v~V~~iD~~t-------------v~~i~v-~~~---~~~~p~g~~~~~~~~~  183 (368)
T 1mda_H          123 GPRVHIIGNCAS--SACLLFFLFGSSAAAGLSVPGASD-------------DQLTKS-ASC---FHIHPGAAATHYLGSC  183 (368)
T ss_dssp             SCCTTSEEECTT--SSCEEEEECSSSCEEEEEETTTEE-------------EEEEEC-SSC---CCCEEEETTEEECCCC
T ss_pred             CCCcceEEEcCC--CCEEEEEccCCCCeEEEEEEchhh-------------ceEEEC-CCc---eEEccCCCeEEEEEcC
Confidence            134678999999  677777764  467888  88864             111110 010   1223444456666777


Q ss_pred             CCcEEEEEcCC-----CCCCC----CCCCC-----CCc---------cceEEEeccCCceeeccCCCC----------Cc
Q 004685          169 DGTLRQHDFRQ-----GSSCP----PAGSS-----HQE---------CRNILLDLRCGAKRSLADPPK----------QT  215 (737)
Q Consensus       169 Dg~I~vwdl~~-----~~~~~----~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~----------~~  215 (737)
                      |+.+.+.|+..     ++...    ....+     ...         .....++........+.....          ..
T Consensus       184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p  263 (368)
T 1mda_H          184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRS  263 (368)
T ss_dssp             TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred             CCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEecccccccccccc
Confidence            88888888776     22110    00000     000         111122221111111110000          00


Q ss_pred             cceEEEEEecCCCcEEEEEe---C-----CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          216 LSLKSCDISSTRPHLLLVGG---S-----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       216 ~~v~~i~~sp~~~~~l~t~s---~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                      .....++|+|++..++++..   .     ++.+.++|+.+.+.+..+..                      +.....++|
T Consensus       264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----------------------g~~p~gi~~  321 (368)
T 1mda_H          264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----------------------GHDSDAIIA  321 (368)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----------------------EEEECEEEE
T ss_pred             CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----------------------CCCcceEEE
Confidence            11122689998544444333   2     23566999999876655431                      113778999


Q ss_pred             cCCCCE-EEEEe-CCCeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004685          288 SPNGEE-VLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (737)
Q Consensus       288 sp~g~~-l~~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (737)
                      +|||++ +++.. .++.|.++|+.+.+.. .....+.....+++.+
T Consensus       322 s~Dg~~l~va~~~~~~~VsVID~~t~kvv-~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          322 AQDGASDNYANSAGTEVLDIYDAASDQDQ-SSVELDKGPESLSVQN  366 (368)
T ss_dssp             CCSSSCEEEEEETTTTEEEEEESSSCEEE-EECCCCSCCCEEECCC
T ss_pred             CCCCCEEEEEccCCCCeEEEEECCCCcEE-EEEECCCCCCEEEeec
Confidence            999985 55555 4899999999996543 4444555555666554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.82  E-value=2.6e-08  Score=104.13  Aligned_cols=176  Identities=9%  Similarity=-0.017  Sum_probs=116.8

Q ss_pred             ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC-CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEE
Q 004685           95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (737)
Q Consensus        95 ~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~  173 (737)
                      .+..+++++.  ..++++|+.++ +++|++........ .....++.. ...+.. |+.++|   ++.+|+++ .++.|+
T Consensus        39 ~~nlLais~~--~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f---d~~~L~v~-~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNS--KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF---HGDQVLVS-TRNALY  109 (388)
T ss_dssp             CCBCEEEETT--TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE---ETTEEEEE-ESSEEE
T ss_pred             cccEEEEcCC--CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE---CCCEEEEE-cCCcEE
Confidence            6899999999  68899999885 55698764320000 000012222 224666 999999   44788787 889999


Q ss_pred             EEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004685          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (737)
Q Consensus       174 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~  253 (737)
                      +||+++....           ...              +.+...+.++.+.+  ++ ++++..||.|.+||+..++... 
T Consensus       110 v~dv~sl~~~-----------~~~--------------~~~~~~v~~i~~~~--p~-~av~~~dG~L~v~dl~~~~~~~-  160 (388)
T 1xip_A          110 SLDLEELSEF-----------RTV--------------TSFEKPVFQLKNVN--NT-LVILNSVNDLSALDLRTKSTKQ-  160 (388)
T ss_dssp             EEESSSTTCE-----------EEE--------------EECSSCEEEEEECS--SE-EEEEETTSEEEEEETTTCCEEE-
T ss_pred             EEEchhhhcc-----------Ccc--------------ceeecceeeEEecC--CC-EEEEECCCCEEEEEccCCcccc-
Confidence            9999876521           001              11233466666665  33 8889999999999998765321 


Q ss_pred             ccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--ceee------e---ecCC
Q 004685          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG--RAMR------Y---TVGD  322 (737)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~--~~~~------~---~~~~  322 (737)
                                              ....|++++|||+|  ++.|..||.+++|+......  ...+      .   .+..
T Consensus       161 ------------------------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~  214 (388)
T 1xip_A          161 ------------------------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY  214 (388)
T ss_dssp             ------------------------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS
T ss_pred             ------------------------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCe
Confidence                                    11159999999999  78899999999998887553  2222      1   1345


Q ss_pred             CCeeeeeccCCC
Q 004685          323 ASKIMSFTPTLN  334 (737)
Q Consensus       323 ~~~~~~~~p~~~  334 (737)
                      .+..++|.++..
T Consensus       215 ~V~sI~wl~~~~  226 (388)
T 1xip_A          215 SPLSVTILSPQD  226 (388)
T ss_dssp             EEEEEEESSSSE
T ss_pred             eEEEEEEecCCe
Confidence            566677877543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.81  E-value=8.5e-08  Score=110.24  Aligned_cols=233  Identities=14%  Similarity=0.059  Sum_probs=133.8

Q ss_pred             ccCCceEEEEEcCCCCEEEE-----EeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc----
Q 004685           48 GHQGCVNAISWNSKGSLLIS-----GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE----  118 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~las-----gs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~----  118 (737)
                      +|...+..++|||||++||-     |+....|++||+.+++.+...  .+......++|+ +  ++.|+.++.+..    
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~~k~~~~~Ws-D--g~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP--LKDVKFSGISWL-G--NEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE--EEEEESCCCEEE-T--TTEEEEEESSCCC---
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc--cCCceeccEEEe-C--CCEEEEEEecCccccc
Confidence            45567889999999998884     333467999999999865432  112223578899 8  688888877743    


Q ss_pred             ---------EEEEecCCCCCCCCCCCCCCCceeecc-CCCceeEEEEecCCCcEEEEEeCC---CcEEEEEcCCCCCCCC
Q 004685          119 ---------VRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGSSCPP  185 (737)
Q Consensus       119 ---------I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~D---g~I~vwdl~~~~~~~~  185 (737)
                               |++|++.+.....      ..+..... |......+.|+|++..++++.+.+   ..|.++|+.++...  
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~--  272 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDD------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP--  272 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGC------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC--
T ss_pred             ccccCCCcEEEEEECCCCcccc------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc--
Confidence                     9999987643211      11222233 445578899999654444554432   47899998765311  


Q ss_pred             CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC---CcEEEEECCCCCCcccccCCCCCCC
Q 004685          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPP  262 (737)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~  262 (737)
                              ...           +..   +....... |+++++.+++....+   +.|..+|+.+.....          
T Consensus       273 --------~~~-----------l~~---~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~----------  319 (693)
T 3iuj_A          273 --------LLT-----------VQG---DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH----------  319 (693)
T ss_dssp             --------CEE-----------EEC---SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG----------
T ss_pred             --------eEE-----------EeC---CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc----------
Confidence                    011           111   11222222 556555566665544   678899988653200          


Q ss_pred             CccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCcc
Q 004685          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE  337 (737)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  337 (737)
                       ...+     ..  +.. .+.  .|++++++|+....+ +  .|++|++..+............+..+.++|+...+.
T Consensus       320 -~~~l-----~~--~~~-~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~  386 (693)
T 3iuj_A          320 -WRDL-----IP--ERQ-QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALY  386 (693)
T ss_dssp             -CEEE-----EC--CCS-SCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEE
T ss_pred             -cEEE-----ec--CCC-CEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEE
Confidence             0000     11  111 133  899999988887764 3  688998875332222122222233445555554443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.80  E-value=1.3e-07  Score=109.75  Aligned_cols=231  Identities=11%  Similarity=-0.008  Sum_probs=131.7

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc-----
Q 004685           49 HQGCVNAISWNSKGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE-----  118 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~-----  118 (737)
                      |...+..++|||||++||.+..+     ..|++||+.+++.+...  .+...+..++|+|+   +.|+.++.++.     
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wspD---~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLGN---DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEESTT---SEEEEEECCCC-----
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEECC---CEEEEEEecCcccccc
Confidence            44478899999999999877543     46999999999875432  12233467899998   45666555543     


Q ss_pred             ---------EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCCCCC
Q 004685          119 ---------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCP  184 (737)
Q Consensus       119 ---------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~~~~  184 (737)
                               |++|++.+.....      ..+.....+...+..+.|+| ++++|+..+.+     ..|.+||+.++... 
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~------~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~-  307 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSAD------QPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIG-  307 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEEC-
T ss_pred             cccCCCCCEEEEEECCCCchhC------EEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCc-
Confidence                     8889886532110      01122223334588999999 45666555543     37899998765200 


Q ss_pred             CCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC----CCcEEEEECCCCC-CcccccCCCC
Q 004685          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----DAFARLYDRRMLP-PLTSCQKRMS  259 (737)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~----Dg~i~iwd~~~~~-~~~~~~~~~~  259 (737)
                              +...+.           .   +....... ++|++ +.|+..+.    ++.|.+||+.+.. ....+.    
T Consensus       308 --------~~~~l~-----------~---~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~----  359 (741)
T 1yr2_A          308 --------PVTALI-----------P---DLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV----  359 (741)
T ss_dssp             --------CCEEEE-----------C---SSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEE----
T ss_pred             --------ccEEec-----------C---CCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEe----
Confidence                    001111           0   11122223 34654 56665554    3459999987632 111110    


Q ss_pred             CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCcceeeee-cCCCCeeeeeccCCCCcc
Q 004685          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN-HAGGRAMRYT-VGDASKIMSFTPTLNGLE  337 (737)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~-~~~~~~~~~~-~~~~~~~~~~~p~~~~~~  337 (737)
                                     . +....+..++|+ ++.++++...|+..++|.+. +++....+.. ....+..++++|+.+.+.
T Consensus       360 ---------------~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~  422 (741)
T 1yr2_A          360 ---------------P-ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY  422 (741)
T ss_dssp             ---------------C-CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred             ---------------c-CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE
Confidence                           0 111136677887 56677777889887777665 3332222221 233455677777665554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.78  E-value=1.5e-06  Score=89.76  Aligned_cols=223  Identities=9%  Similarity=-0.013  Sum_probs=132.0

Q ss_pred             ceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           52 CVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        52 ~V~~l~~s~~g-~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      -..+..|+|++ .+++++..++.|.+||..+++.. .+ . ....+.+++|+|+  +.++++. .+ .|.+||.......
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~-~~~~v~~i~~~~d--g~l~v~~-~~-gl~~~d~~~g~~~  122 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-A-LPFMGSALAKISD--SKQLIAS-DD-GLFLRDTATGVLT  122 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-E-CSSCEEEEEEEET--TEEEEEE-TT-EEEEEETTTCCEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE-E-CCCcceEEEEeCC--CeEEEEE-CC-CEEEEECCCCcEE
Confidence            45678899974 56677777899999999887643 33 1 3467999999998  6666654 44 4899998653211


Q ss_pred             CCCCCCCCCceeec--cCCCceeEEEEecCCCcEEEEEeC------CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          131 GLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       131 ~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~------Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                              .+....  .....+.+++++| +++++++...      .+.|..++  .++.            ..+.    
T Consensus       123 --------~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~------------~~~~----  175 (326)
T 2ghs_A          123 --------LHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKV------------TKLF----  175 (326)
T ss_dssp             --------EEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEE------------EEEE----
T ss_pred             --------EEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcE------------EEee----
Confidence                    011111  1124588999999 4466554432      13444444  2220            0000    


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC--CC-CCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR--ML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                                ........++|+|++..++++.+.++.|.+||+.  ++ .....           ..+.  .+  ... .
T Consensus       176 ----------~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~-----------~~~~--~~--~~~-~  229 (326)
T 2ghs_A          176 ----------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA-----------EVFI--DS--TGI-K  229 (326)
T ss_dssp             ----------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC-----------EEEE--EC--TTS-S
T ss_pred             ----------CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCc-----------eEEE--EC--CCC-C
Confidence                      0112357899999853344555667899999986  43 21100           0000  00  001 1


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeec-cCCCC
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNG  335 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-p~~~~  335 (737)
                      .....++++++|.++++...++.|.+||. +++...........+..++|. |+...
T Consensus       230 ~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~  285 (326)
T 2ghs_A          230 GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASR  285 (326)
T ss_dssp             SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred             CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCE
Confidence            13678999999987777777789999998 444433333334456778887 65443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.75  E-value=4.4e-07  Score=94.60  Aligned_cols=79  Identities=8%  Similarity=-0.047  Sum_probs=65.3

Q ss_pred             ccCCCCEEEEecC---------CCcEEEEEcCcccEEEEeecCCCceEEEEecCCCC-eEEEEe-cCCcEEEEcCCCCCC
Q 004685          635 LGQRGDYIASGSD---------DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSG-IDNTIKIWTPSASVP  703 (737)
Q Consensus       635 ~s~d~~~l~sgs~---------D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~-~l~S~~-~Dg~i~lW~~~~~~~  703 (737)
                      +++|++.++.+..         +..+.|+|+.+++.+.++.... ...+++|+||++ ++++.. .+++|.++|+.+.+.
T Consensus       271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence            7899887765432         2345599999999999997655 689999999997 678887 699999999999999


Q ss_pred             ccccCCCCCCC
Q 004685          704 SIVSGGAAGPD  714 (737)
Q Consensus       704 ~~~~~~~~~~~  714 (737)
                      +.++..+.+|.
T Consensus       350 v~~I~vg~~P~  360 (368)
T 1mda_H          350 QSSVELDKGPE  360 (368)
T ss_dssp             EEECCCCSCCC
T ss_pred             EEEEECCCCCC
Confidence            99998777764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.70  E-value=1.1e-06  Score=101.07  Aligned_cols=68  Identities=10%  Similarity=0.028  Sum_probs=49.9

Q ss_pred             ccCCCCEEEEecCCC---cEEEEEcCcccEEEEee-cCCCceEEEEecCCCCeEEEEecC----CcEEEEcCCCCCC
Q 004685          635 LGQRGDYIASGSDDG---RWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSGID----NTIKIWTPSASVP  703 (737)
Q Consensus       635 ~s~d~~~l~sgs~D~---~i~iWd~~t~~~~~~l~-gH~~~V~~v~~sp~~~~l~S~~~D----g~i~lW~~~~~~~  703 (737)
                      +++++++|+....++   .|++||++.+. .+.+. .+.+.|..+.++|+++.|+-...+    ++|..||+.+++.
T Consensus       333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          333 VHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            788898877766544   78999998554 45554 456678889999998755444444    7899999988764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.66  E-value=4.7e-06  Score=85.11  Aligned_cols=159  Identities=13%  Similarity=0.083  Sum_probs=100.5

Q ss_pred             cCccceEEEEEeeCCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           91 GHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        91 ~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                      ..........|+|+  ++ ++++...++.|..|+... .           ...+..+...+..+++++ +++++++...+
T Consensus        42 ~~~~~~egp~~~~~--g~~l~~~d~~~~~i~~~~~~g-~-----------~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~  106 (305)
T 3dr2_A           42 DQATWSEGPAWWEA--QRTLVWSDLVGRRVLGWREDG-T-----------VDVLLDATAFTNGNAVDA-QQRLVHCEHGR  106 (305)
T ss_dssp             CCCSSEEEEEEEGG--GTEEEEEETTTTEEEEEETTS-C-----------EEEEEESCSCEEEEEECT-TSCEEEEETTT
T ss_pred             cCCcCccCCeEeCC--CCEEEEEECCCCEEEEEeCCC-C-----------EEEEeCCCCccceeeECC-CCCEEEEECCC
Confidence            34556778999999  56 677777889999998742 1           334445667789999999 55766655556


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEE----EeC---------
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV----GGS---------  236 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t----~s~---------  236 (737)
                      +.|..|+.. ++.            ..+.....+         .....+..++++|+ ++++++    |..         
T Consensus       107 ~~v~~~~~~-g~~------------~~~~~~~~~---------~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~~~~~~  163 (305)
T 3dr2_A          107 RAITRSDAD-GQA------------HLLVGRYAG---------KRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQGCPAD  163 (305)
T ss_dssp             TEEEEECTT-SCE------------EEEECEETT---------EECSCCCCEEECTT-SCEEEECCSGGGSCGGGSCCCC
T ss_pred             CEEEEECCC-CCE------------EEEEeccCC---------CccCCCCCEEECCC-CCEEEeCcCCCccccccccccc
Confidence            789999875 321            111110000         01134567899997 567765    332         


Q ss_pred             ----CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC------CeEEEE
Q 004685          237 ----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLM  306 (737)
Q Consensus       237 ----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d------g~v~iw  306 (737)
                          .+.|..||..+++.....                .       ......++|+|+++.|+.+...      +.|++|
T Consensus       164 ~~~~~~~v~~~d~~~g~~~~~~----------------~-------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~  220 (305)
T 3dr2_A          164 PELAHHSVYRLPPDGSPLQRMA----------------D-------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF  220 (305)
T ss_dssp             CSSSCEEEEEECSSSCCCEEEE----------------E-------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred             cccCCCeEEEEcCCCCcEEEEe----------------c-------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence                245777776554321100                0       0126779999999988888765      678888


Q ss_pred             EcCC
Q 004685          307 DVNH  310 (737)
Q Consensus       307 d~~~  310 (737)
                      ++..
T Consensus       221 ~~~~  224 (305)
T 3dr2_A          221 AWRD  224 (305)
T ss_dssp             EEET
T ss_pred             EecC
Confidence            8765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.64  E-value=8.7e-09  Score=108.70  Aligned_cols=183  Identities=11%  Similarity=0.090  Sum_probs=102.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (737)
Q Consensus        61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (737)
                      ++.++++++.|+.|..||..+|+.+..+ ..  ..+.+..+..+  +.++++++.|+.|+.||..+++..          
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~-~~--~~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG~~~----------   72 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTL-KE--DPVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNNEGL----------   72 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEE-EC--CCSCCCC-------CCEEECTTTCCEEEC-----CCS----------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEe-cC--CCceecceEcC--CCEEEEeCCCCEEEEEECCCCcee----------
Confidence            5788999999999999999999999888 33  45555555665  567888889999999999764331          


Q ss_pred             eeeccCCC-cee-EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccce
Q 004685          141 ALYQCHTR-RVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL  218 (737)
Q Consensus       141 ~~~~~h~~-~v~-~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  218 (737)
                      ..+..+.. .+. +..+.  .+..+++++.|+.|..||..+++..              |....+           .   
T Consensus        73 w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~--------------w~~~~~-----------~---  122 (369)
T 2hz6_A           73 TKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQ--------------QTLSSA-----------F---  122 (369)
T ss_dssp             EECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------------------
T ss_pred             eeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEE--------------EEecCC-----------C---
Confidence            11211110 000 00111  2245677888999999999988743              111100           0   


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC---CEEE
Q 004685          219 KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG---EEVL  295 (737)
Q Consensus       219 ~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g---~~l~  295 (737)
                       ...++|. +..+++++.|+.|+.||.++++.+..+...                       .....+++++.   ..++
T Consensus       123 -~~~~~p~-~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-----------------------~~~~~~~~~~~~~~~~v~  177 (369)
T 2hz6_A          123 -ADSLSPS-TSLLYLGRTEYTITMYDTKTRELRWNATYF-----------------------DYAASLPEDDVDYKMSHF  177 (369)
T ss_dssp             ------------EEEEEEEEEEECCCSSSSSCCCEEEEE-----------------------EECCBCCCCCTTCCCCEE
T ss_pred             -ccccccc-CCEEEEEecCCEEEEEECCCCCEEEeEecc-----------------------cccCccccCCccccceEE
Confidence             1234454 468888999999999999988754433100                       01112233332   4578


Q ss_pred             EEeCCCeEEEEEcCCCCc
Q 004685          296 LSYSGEHVYLMDVNHAGG  313 (737)
Q Consensus       296 ~g~~dg~v~iwd~~~~~~  313 (737)
                      +++.||.|+.||..+++.
T Consensus       178 ~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          178 VSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             EEETSCEEEEECTTTCCE
T ss_pred             EECCCCEEEEEECCCCcE
Confidence            889999999999998764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.62  E-value=6e-06  Score=94.29  Aligned_cols=54  Identities=22%  Similarity=0.220  Sum_probs=43.4

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCc-eEEEEecCCCC-eEEEEe
Q 004685          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATSG  688 (737)
Q Consensus       635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~-V~~v~~sp~~~-~l~S~~  688 (737)
                      ++..+.+|+.|+.|+++++||.+||+++-.++...+. ..-+.|+.+|+ |++..+
T Consensus       482 ~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          482 LSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence            5667889999999999999999999999999865433 35577889997 655543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.60  E-value=1.5e-06  Score=88.89  Aligned_cols=230  Identities=10%  Similarity=0.030  Sum_probs=136.3

Q ss_pred             cceeecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           42 QERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        42 ~~~~l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      .+..+..+.....+..|+|+++ +++++..++.|..|+.. ++ ...+ ..+...+.++++.++  +.++++...++.|.
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~-~~~~~~~~gl~~d~d--G~l~v~~~~~~~v~  110 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVL-LDATAFTNGNAVDAQ--QRLVHCEHGRRAIT  110 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEE-EESCSCEEEEEECTT--SCEEEEETTTTEEE
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEE-eCCCCccceeeECCC--CCEEEEECCCCEEE
Confidence            3444555556678899999998 67788888999999984 44 3344 345667899999998  67666655568899


Q ss_pred             EEecCCCCCCCCCCCCCCCceeecc-CCCceeEEEEecCCCcEEEE----EeC-------------CCcEEEEEcCCCCC
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWS----ASE-------------DGTLRQHDFRQGSS  182 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s----~s~-------------Dg~I~vwdl~~~~~  182 (737)
                      +|+.. +....       ......+ ....+..+++++ ++.++++    |..             .+.|..||..+++.
T Consensus       111 ~~~~~-g~~~~-------~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~  181 (305)
T 3dr2_A          111 RSDAD-GQAHL-------LVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL  181 (305)
T ss_dssp             EECTT-SCEEE-------EECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC
T ss_pred             EECCC-CCEEE-------EEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE
Confidence            99875 21100       0001111 123467799998 5577765    322             23455666544431


Q ss_pred             CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC------CcEEEEECCCCCCcccccC
Q 004685          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARLYDRRMLPPLTSCQK  256 (737)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D------g~i~iwd~~~~~~~~~~~~  256 (737)
                      .                       .+.    .......++|+|+ ++.|+++...      +.|++||+.... +...  
T Consensus       182 ~-----------------------~~~----~~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~--  230 (305)
T 3dr2_A          182 Q-----------------------RMA----DLDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR--  230 (305)
T ss_dssp             E-----------------------EEE----EESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTE-EEEE--
T ss_pred             E-----------------------EEe----cCCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC--
Confidence            1                       111    1234578999998 4666666554      789999987532 1100  


Q ss_pred             CCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCC
Q 004685          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG  335 (737)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~  335 (737)
                              ..+..     . . ......++++++|+ |.+++.+ .|.+|+.. ++... .+.....+..++|.|+.+.
T Consensus       231 --------~~~~~-----~-~-~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~-g~~~~-~~~~~~~~~~~~f~~d~~~  290 (305)
T 3dr2_A          231 --------RHFAS-----V-P-DGLPDGFCVDRGGW-LWSSSGT-GVCVFDSD-GQLLG-HIPTPGTASNCTFDQAQQR  290 (305)
T ss_dssp             --------EEEEC-----C-S-SSCCCSEEECTTSC-EEECCSS-EEEEECTT-SCEEE-EEECSSCCCEEEECTTSCE
T ss_pred             --------eEEEE-----C-C-CCCCCeEEECCCCC-EEEecCC-cEEEECCC-CCEEE-EEECCCceeEEEEeCCCCE
Confidence                    00000     0 0 01245689999999 4455544 59999984 34333 3333335677888865543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.58  E-value=9.5e-06  Score=83.71  Aligned_cols=193  Identities=11%  Similarity=0.113  Sum_probs=117.3

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc---CccceEEEEEeeCCCCCEEEEEECC----CcEEEE
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG---HSANVFCTKFVPETSDELVVSGAGD----AEVRLF  122 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~---h~~~V~~v~~sp~~~~~~l~sgs~d----g~I~iw  122 (737)
                      ...|.+++|+++|+++++. . ..|.+||..+++........   ....+.+++++|+  |.++++...+    +...||
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC--CCEEEEeCCCcCCCCceEEE
Confidence            4579999999999877765 4 35999999887754322111   1246889999998  6776655421    233444


Q ss_pred             ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC--CC-CCCCCCCCCCCccceEEEe
Q 004685          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QG-SSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~--~~-~~~~~~~~~~~~~~~~~~~  199 (737)
                      .+..  +.         ...+..+......++|+|++..++++.+.++.|.+||+.  ++ ...         ....+..
T Consensus       165 ~~~~--g~---------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------~~~~~~~  224 (326)
T 2ghs_A          165 HVAK--GK---------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------KAEVFID  224 (326)
T ss_dssp             EEET--TE---------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------CCEEEEE
T ss_pred             EEeC--Cc---------EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---------CceEEEE
Confidence            4432  21         222222334567899999554455566667899999986  33 211         0111111


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                      +           .........++++++ +++.++...++.|.+||. .++.+..+..                    +. 
T Consensus       225 ~-----------~~~~~~p~gi~~d~~-G~lwva~~~~~~v~~~d~-~g~~~~~i~~--------------------~~-  270 (326)
T 2ghs_A          225 S-----------TGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDT-DGNHIARYEV--------------------PG-  270 (326)
T ss_dssp             C-----------TTSSSEEEEEEECTT-SCEEEEEETTTEEEEECT-TCCEEEEEEC--------------------SC-
T ss_pred             C-----------CCCCCCCCeeEECCC-CCEEEEEeCCCEEEEECC-CCCEEEEEEC--------------------CC-
Confidence            1           112234578899987 466666666788999998 3443322210                    11 


Q ss_pred             cceeEEEEc-CCCCEEEEEeCC
Q 004685          280 LHLTHVTFS-PNGEEVLLSYSG  300 (737)
Q Consensus       280 ~~i~~v~~s-p~g~~l~~g~~d  300 (737)
                      ..+++++|+ |++..|++++..
T Consensus       271 ~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          271 KQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             SBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCcEEEEEecCCCCEEEEEecC
Confidence            148999998 898887776654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.44  E-value=1.4e-05  Score=90.95  Aligned_cols=63  Identities=11%  Similarity=0.040  Sum_probs=52.0

Q ss_pred             CCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCCC
Q 004685          647 DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGA  710 (737)
Q Consensus       647 ~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~  710 (737)
                      ..+.|..||+.||+.+-.+.. ..++++..+++++.+++.++.||.|++||.++++.+....-.
T Consensus       455 ~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          455 PFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (677)
T ss_dssp             CEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence            358999999999999877763 345666777888888888999999999999999998776533

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.43  E-value=2.5e-05  Score=76.80  Aligned_cols=225  Identities=7%  Similarity=-0.031  Sum_probs=134.7

Q ss_pred             cccceeecccCC--ceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685           40 LSQERELEGHQG--CVNAISWNSKGSLLISGSD--DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (737)
Q Consensus        40 ~~~~~~l~~H~~--~V~~l~~s~~g~~lasgs~--dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  115 (737)
                      .+.+.++. |..  ....|.|++++.++++.+.  ++.|+++|+.+++.+..+..+.......+++..   +.++++.-.
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g---~~lyv~t~~   84 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN---EKLYQVVWL   84 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---TEEEEEETT
T ss_pred             ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC---CEEEEEEec
Confidence            45566663 543  3689999998766665553  579999999999998887322222334555543   345555556


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      ++.+.++|..+..          .+..+..-...  ...+++++..+++ +..+++|.++|..+.+...           
T Consensus        85 ~~~v~viD~~t~~----------v~~~i~~g~~~--g~glt~Dg~~l~v-s~gs~~l~viD~~t~~v~~-----------  140 (266)
T 2iwa_A           85 KNIGFIYDRRTLS----------NIKNFTHQMKD--GWGLATDGKILYG-SDGTSILYEIDPHTFKLIK-----------  140 (266)
T ss_dssp             CSEEEEEETTTTE----------EEEEEECCSSS--CCEEEECSSSEEE-ECSSSEEEEECTTTCCEEE-----------
T ss_pred             CCEEEEEECCCCc----------EEEEEECCCCC--eEEEEECCCEEEE-ECCCCeEEEEECCCCcEEE-----------
Confidence            8999999998632          23333211111  2335554545554 4567899999998765320           


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                      .+.         +.........++.+.|. + +.+++....++.|.+.|..+++.+..+....        ..+......
T Consensus       141 ~I~---------Vg~~~~p~~~~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g--------~~~~~~~~~  201 (266)
T 2iwa_A          141 KHN---------VKYNGHRVIRLNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLPN--------LRKKLIDEG  201 (266)
T ss_dssp             EEE---------CEETTEECCCEEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHH--------HHHHHHHTT
T ss_pred             EEE---------ECCCCcccccceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCC--------ccccccccc
Confidence            000         00000011235677777 3 5666666678999999999988766553210        000000000


Q ss_pred             CCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCC
Q 004685          276 GRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA  311 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~  311 (737)
                      .......+.++|+|+++.+++++. .++|++.++...
T Consensus       202 ~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          202 FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            011113688999999887666665 789999998763

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.43  E-value=2.5e-05  Score=88.95  Aligned_cols=65  Identities=17%  Similarity=0.141  Sum_probs=50.2

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEeec-CCCceEEEEecCCCC-eEEEEec----------------CCcEEEE
Q 004685          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLG-DEAVVNCVQCHPFDC-VVATSGI----------------DNTIKIW  696 (737)
Q Consensus       635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~g-H~~~V~~v~~sp~~~-~l~S~~~----------------Dg~i~lW  696 (737)
                      ++.++.+++.|+.||.+++||..||+++..+.. +.....-+.|+++|+ +++..+.                .+.+.++
T Consensus       484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f  563 (677)
T 1kb0_A          484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTF  563 (677)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEE
T ss_pred             eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEE
Confidence            567888999999999999999999999999974 444445567789997 4444322                4678888


Q ss_pred             cCC
Q 004685          697 TPS  699 (737)
Q Consensus       697 ~~~  699 (737)
                      .+.
T Consensus       564 ~l~  566 (677)
T 1kb0_A          564 VVG  566 (677)
T ss_dssp             EET
T ss_pred             ecc
Confidence            877

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.41  E-value=8.8e-05  Score=73.82  Aligned_cols=221  Identities=7%  Similarity=0.004  Sum_probs=133.5

Q ss_pred             CceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           51 GCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        51 ~~V~~l~~s~~g~~-lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      ..+.+++|++++.. +++-...+.|.+++..++.....+ ........++++.|+. +.++++-...+.|.++++.....
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCE
Confidence            45789999996554 455556789999999866543333 2233567899999973 45556666678999999863211


Q ss_pred             CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~--Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                                .............++++|+++.++++...  .+.|..+++.....            ..+.         
T Consensus       114 ----------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~------------~~~~---------  162 (267)
T 1npe_A          114 ----------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------------RILA---------  162 (267)
T ss_dssp             ----------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------------EEEE---------
T ss_pred             ----------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc------------EEEE---------
Confidence                      11111122456899999965555555443  46788888754321            1111         


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                        .  ........++++|+++.++++-...+.|.++|+........+                  . ...   ....+++
T Consensus       163 --~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~------------------~-~~~---~P~gi~~  216 (267)
T 1npe_A          163 --Q--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL------------------E-GLQ---YPFAVTS  216 (267)
T ss_dssp             --C--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE------------------E-CCC---SEEEEEE
T ss_pred             --E--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe------------------c-CCC---CceEEEE
Confidence              0  112356889999975566677777789999998753211110                  0 001   1345655


Q ss_pred             cCCCCEEEEEeC-CCeEEEEEcCCCCcceeeeec-CCCCeeeeeccC
Q 004685          288 SPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT  332 (737)
Q Consensus       288 sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~  332 (737)
                      .  +..|+.+.. .+.|.++|..+++........ ...+..+++.|+
T Consensus       217 d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          217 Y--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             E--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             e--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            4  455666654 689999999886654443322 123566666665

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.40  E-value=0.00021  Score=75.11  Aligned_cols=106  Identities=14%  Similarity=0.120  Sum_probs=67.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEcccC--------ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC
Q 004685           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGH--------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (737)
Q Consensus        61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h--------~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~  132 (737)
                      .+..|+.++.++.|..+|..+++.+..+....        ...+.+.-.. .  +..++.++.++.|..+|..+++.   
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~v~v~~~~g~l~a~d~~tG~~---  125 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-S--GGHVYIGSEKAQVYALNTSDGTV---  125 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-E--TTEEEEEETTSEEEEEETTTCCE---
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-e--CCEEEEEcCCCEEEEEECCCCCE---
Confidence            46678888889999999999999887763211        1223222222 2  46788888999999999886432   


Q ss_pred             CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       133 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                             .................  + ..++.++.++.|..+|..+++.
T Consensus       126 -------~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~  165 (376)
T 3q7m_A          126 -------AWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAV  165 (376)
T ss_dssp             -------EEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCE
T ss_pred             -------EEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcE
Confidence                   22222111111112222  3 4666788899999999988763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.35  E-value=1.4e-05  Score=83.15  Aligned_cols=222  Identities=9%  Similarity=0.020  Sum_probs=129.9

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEEccc-----CccceEEEEEeeCCCCCEEEEEE---
Q 004685           48 GHQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETG-----HSANVFCTKFVPETSDELVVSGA---  114 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~-----dg~V~vwd~~~~~~~~~~~~~-----h~~~V~~v~~sp~~~~~~l~sgs---  114 (737)
                      +|-..+.+|+|+++++++++-..     ++.|.+||+.+++.+..+...     +...+..+++.|+. +..+++..   
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~~  142 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAPD  142 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCSG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC-CEEEEEcCccC
Confidence            45678999999999887776543     578999999999877666211     22456899999863 45556655   


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCcee-EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (737)
Q Consensus       115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~  193 (737)
                      .++.|.+||+.....          ...+..|..... ...+.+ ++..+.+.+.++.++.|.                 
T Consensus       143 ~~~~i~v~d~~~g~~----------~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~-----------------  194 (343)
T 2qe8_A          143 DKAALIRVDLQTGLA----------ARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH-----------------  194 (343)
T ss_dssp             GGCEEEEEETTTCCE----------EEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC-----------------
T ss_pred             CCCeEEEEECCCCCE----------EEEecCCCcccccccceeE-CCEEEEeccCCCceecee-----------------
Confidence            678999999875321          222333211100 023333 345566667777765542                 


Q ss_pred             ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC-cEEEEECCCCCCcccccCCCCCCCCccccccccc
Q 004685          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (737)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (737)
                                            ..+..++|+|+ ++.|+++..++ .+..++....... .+       .....+.....
T Consensus       195 ----------------------~~~~gia~s~d-g~~ly~~~~~~~~l~~~~~~~~~~~-~~-------~~~~~~~~~~~  243 (343)
T 2qe8_A          195 ----------------------LGVNGIVLDAE-NEWLYLSPMHSTSMYRIKSADLSNL-QL-------TDAELGSKIER  243 (343)
T ss_dssp             ----------------------CCEEEEEECTT-SCEEEEEESSCSEEEEEEHHHHTCT-TC-------CHHHHHTTCEE
T ss_pred             ----------------------cccceeEeccC-CCEEEEEeCCCCeEEEEEHHHhcCC-CC-------ChhhhhcceEe
Confidence                                  13578999997 46777766555 5555543211100 00       00000000000


Q ss_pred             cCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeee-cCCCCeeeeeccC
Q 004685          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPT  332 (737)
Q Consensus       273 ~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~p~  332 (737)
                        .++.. ....++++++|.++++...++.|.+||..+++....... ....+..++|.|+
T Consensus       244 --~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~  301 (343)
T 2qe8_A          244 --YSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD  301 (343)
T ss_dssp             --EEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred             --cccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence              01111 255689999999888888899999999855442222211 1334566777765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.33  E-value=2.4e-05  Score=89.26  Aligned_cols=61  Identities=8%  Similarity=0.041  Sum_probs=50.7

Q ss_pred             CCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCC
Q 004685          648 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG  709 (737)
Q Consensus       648 D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~  709 (737)
                      +|.|+.||+.||+.+-.+..|.. +..-.++..+.+++.++.||.|++||.++++.+-..+-
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence            68999999999999988877653 44456677788999999999999999999998865543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.23  E-value=8.4e-05  Score=77.94  Aligned_cols=212  Identities=12%  Similarity=0.076  Sum_probs=120.4

Q ss_pred             CCCCEEE-EEeCCCcEEEEECCCC----eEEEEEc------ccCccceEEEEEeeCCCCCEEEEEECC------CcEEEE
Q 004685           60 SKGSLLI-SGSDDTHINVWSYSSR----KLLHSIE------TGHSANVFCTKFVPETSDELVVSGAGD------AEVRLF  122 (737)
Q Consensus        60 ~~g~~la-sgs~dg~V~vwd~~~~----~~~~~~~------~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~iw  122 (737)
                      +++++|+ +|-.++.|.|+|+.+.    +..+.+.      ......-..+...|+  + +++++..+      |.|.+.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD--A-IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS--C-EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC--e-EEEEcCCCcCCCCCCeEEEE
Confidence            6777665 5667889999999755    5566551      011224567788898  6 77777665      789999


Q ss_pred             ecCCCCCCCCCCCCCCCceeecc--CC-CceeEEEEecCCCcEEEEEe-------------------CCCcEEEEEcCCC
Q 004685          123 NLSRFSGRGLDDNAITPSALYQC--HT-RRVKKLAVEVGNPHVVWSAS-------------------EDGTLRQHDFRQG  180 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~--h~-~~v~~l~~~p~~~~~l~s~s-------------------~Dg~I~vwdl~~~  180 (737)
                      |..+.+-          +..+..  .. ..-..+.|+| +.+.+++..                   .+.+|.+||+.++
T Consensus       170 D~~T~~v----------~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          170 DHYSFEP----------LGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             CTTTCCE----------EEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             ECCCCeE----------EEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence            9886332          333321  11 2234688899 556777764                   3689999999876


Q ss_pred             CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEE--ecCCCcEEEEEe-----CCCcEEEEECCCCCCc--
Q 004685          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPHLLLVGG-----SDAFARLYDRRMLPPL--  251 (737)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--sp~~~~~l~t~s-----~Dg~i~iwd~~~~~~~--  251 (737)
                      +..              .        .+... ........+.|  +|++...++++-     .++.|.+|....+...  
T Consensus       239 k~~--------------~--------tI~vg-~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~  295 (462)
T 2ece_A          239 KRI--------------H--------SLTLG-EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAE  295 (462)
T ss_dssp             EEE--------------E--------EEESC-TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEE
T ss_pred             cEe--------------e--------EEecC-CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEE
Confidence            422              0        01100 01122334444  897544444454     6778887766532210  


Q ss_pred             ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCC
Q 004685          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA  311 (737)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~  311 (737)
                      ..+...  +........... ...+........+.+||||++|+++.. .+.|.+||+...
T Consensus       296 ~vIdi~--~~~v~~~lp~~~-~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          296 KVIEIP--AEPLEGNLPEIL-KPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             EEEEEC--CEECCSSCCGGG-GGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred             EEEeCC--Cccccccccccc-cccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            000000  000000000000 000000113678999999999999988 789999999754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.22  E-value=1.4e-06  Score=91.78  Aligned_cols=143  Identities=12%  Similarity=0.066  Sum_probs=71.4

Q ss_pred             CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 004685          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (737)
Q Consensus       107 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~  186 (737)
                      +..+++++.|+.|+.||..+++.          +..+..  ..+.+..+.. ++.++++++.|+.|..||..+++..   
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~----------~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~---   72 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSI----------KWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGL---   72 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCE----------EEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCS---
T ss_pred             CCEEEEEcCCCEEEEEECCCCCE----------EEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCcee---
Confidence            57899999999999999986432          333333  3444444444 4456777789999999999887632   


Q ss_pred             CCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccc
Q 004685          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (737)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  266 (737)
                                 |.........+.     ..+    .+. . +..+++++.|+.|+.||.++++.+..+..          
T Consensus        73 -----------w~~~~~~~~~~~-----~sp----~~~-~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~----------  120 (369)
T 2hz6_A           73 -----------TKLPFTIPELVQ-----ASP----CRS-S-DGILYMGKKQDIWYVIDLLTGEKQQTLSS----------  120 (369)
T ss_dssp             -----------EECSCCHHHHHT-----TCS----CC-------CCCCEEEEEEEEECCC--------------------
T ss_pred             -----------eeeeccCccccc-----cCc----eEe-c-CCEEEEEeCCCEEEEEECCCCcEEEEecC----------
Confidence                       100000000000     000    011 1 24778888899999999998876544321          


Q ss_pred             cccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       267 ~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                                +.     ...++|++..+++++.|+.|+.||..+++
T Consensus       121 ----------~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A          121 ----------AF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             ---------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             ----------CC-----cccccccCCEEEEEecCCEEEEEECCCCC
Confidence                      00     13456788889999999999999988854

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.16  E-value=9.4e-05  Score=71.85  Aligned_cols=209  Identities=9%  Similarity=-0.034  Sum_probs=123.8

Q ss_pred             cccceeecccCCc--eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEEcccCccce--EEEEEeeCCCCCEEEEE
Q 004685           40 LSQERELEGHQGC--VNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANV--FCTKFVPETSDELVVSG  113 (737)
Q Consensus        40 ~~~~~~l~~H~~~--V~~l~~s~~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~h~~~V--~~v~~sp~~~~~~l~sg  113 (737)
                      .+.+.++ .|...  ...|.|+ ++.++.+.+.+|  .|+++|+.+++.+..+. .. ...  ..+++..   +.+++..
T Consensus        31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~-~~~FgeGit~~g---~~ly~lt  103 (262)
T 3nol_A           31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LG-KRYFGEGISDWK---DKIVGLT  103 (262)
T ss_dssp             EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CC-TTCCEEEEEEET---TEEEEEE
T ss_pred             eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cC-CccceeEEEEeC---CEEEEEE
Confidence            4556666 35433  4789998 677777877776  89999999999988873 22 233  3344432   2444444


Q ss_pred             ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (737)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~  193 (737)
                      -.++.+.+||..+..          .+..+.. ...-..++  +++..++ .+..++.|.++|..+.+...         
T Consensus       104 w~~~~v~v~D~~t~~----------~~~ti~~-~~eG~glt--~dg~~L~-~SdGs~~i~~iDp~T~~v~~---------  160 (262)
T 3nol_A          104 WKNGLGFVWNIRNLR----------QVRSFNY-DGEGWGLT--HNDQYLI-MSDGTPVLRFLDPESLTPVR---------  160 (262)
T ss_dssp             SSSSEEEEEETTTCC----------EEEEEEC-SSCCCCEE--ECSSCEE-ECCSSSEEEEECTTTCSEEE---------
T ss_pred             eeCCEEEEEECccCc----------EEEEEEC-CCCceEEe--cCCCEEE-EECCCCeEEEEcCCCCeEEE---------
Confidence            468999999998633          2344432 12212333  4344444 44446789999988876320         


Q ss_pred             ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004685          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (737)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (737)
                        .+         .+.........++.+.|.  ++.+++..-.+..|.+.|.++++.+..+....-.+..       .. 
T Consensus       161 --~I---------~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~-------~~-  219 (262)
T 3nol_A          161 --TI---------TVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEA-------GP-  219 (262)
T ss_dssp             --EE---------ECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGS-------CS-
T ss_pred             --EE---------EeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccc-------cc-
Confidence              00         010000011334556776  3566666667889999999999876665432100000       00 


Q ss_pred             CCCCcccceeEEEEcCCCCEEEEEeCC
Q 004685          274 EHGRSSLHLTHVTFSPNGEEVLLSYSG  300 (737)
Q Consensus       274 ~~~~~~~~i~~v~~sp~g~~l~~g~~d  300 (737)
                       ......-.+.+||+|+++.|++.+..
T Consensus       220 -~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          220 -LPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             -CCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             -ccCcCCceEEEEEcCCCCEEEEECCC
Confidence             00111236889999998888887763

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.16  E-value=1.9e-05  Score=81.22  Aligned_cols=66  Identities=11%  Similarity=0.019  Sum_probs=48.5

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCC
Q 004685          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVP  703 (737)
Q Consensus       635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~  703 (737)
                      +.+++ .|..|+.+|.+..+|. +++.+..+......+.++...+++.+++ ++.+|.+++-.....++
T Consensus       262 ~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~~~~  327 (330)
T 3hxj_A          262 IGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLEHHH  327 (330)
T ss_dssp             ECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC-----
T ss_pred             EcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEecccccc
Confidence            34444 5666778889999996 8888888877777888888888888776 77899999987766554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.11  E-value=0.0009  Score=65.31  Aligned_cols=231  Identities=11%  Similarity=0.130  Sum_probs=135.8

Q ss_pred             eeecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685           44 RELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw  122 (737)
                      +.+.|-.+.+..|+|+|++..| ++...++.|...|.. ++.+..+..........|++.++  +.++++.-.++.+.++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~--g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD--NQFVISDERDYAIYVI   96 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST--TEEEEEETTTTEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC--CEEEEEECCCCcEEEE
Confidence            4566666789999999976644 557788999999998 88777773333356788899887  5666666567889999


Q ss_pred             ecCCCCCCCCCCCCCC-CceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004685          123 NLSRFSGRGLDDNAIT-PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~  201 (737)
                      ++........ ..... ++. ..........++|+|.+..++ ++.......+|.+. +...       .....++.+..
T Consensus        97 ~v~~~~~i~~-~~~~~~~~~-~~~~N~g~EGLA~d~~~~~L~-va~E~~p~~i~~~~-g~~~-------~~~l~i~~~~~  165 (255)
T 3qqz_A           97 SLTPNSEVKI-LKKIKIPLQ-ESPTNCGFEGLAYSRQDHTFW-FFKEKNPIEVYKVN-GLLS-------SNELHISKDKA  165 (255)
T ss_dssp             EECTTCCEEE-EEEEECCCS-SCCCSSCCEEEEEETTTTEEE-EEEESSSEEEEEEE-STTC-------SSCCEEEECHH
T ss_pred             EcCCCCeeee-eeeeccccc-cccccCCcceEEEeCCCCEEE-EEECcCCceEEEEc-cccc-------CCceeeecchh
Confidence            8875321000 00000 000 012344568999999554444 45544455555554 2100       00111111100


Q ss_pred             CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc
Q 004685          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (737)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (737)
                            +. .......+.+++++|..+.+++.+.....|.++|... +.+..+.....       +   +-  -.+.-..
T Consensus       166 ------~~-~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g-------~---~~--l~~~~~q  225 (255)
T 3qqz_A          166 ------LQ-RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKG-------S---RG--LSHNIKQ  225 (255)
T ss_dssp             ------HH-HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTT-------G---GG--CSSCCCS
T ss_pred             ------hc-cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCc-------c---CC--cccccCC
Confidence                  00 0011234689999998888888888889999999763 33333211100       0   00  0011113


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       282 i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      -..|+|.++|+ |++.+.-+.++.|.-.
T Consensus       226 pEGia~d~~G~-lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          226 AEGVAMDASGN-IYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             EEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred             CCeeEECCCCC-EEEEcCCceEEEEEec
Confidence            67899999998 6666887788887644

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.08  E-value=0.00016  Score=75.82  Aligned_cols=254  Identities=12%  Similarity=0.041  Sum_probs=141.5

Q ss_pred             hhccccCCCCCccccccccccc--ccccccceeec------cc-CCceEEEEEcCCCCEEEEEeCC------CcEEEEEC
Q 004685           15 LDTRHTDTRPDVNHSLQMHSSL--VRRLSQERELE------GH-QGCVNAISWNSKGSLLISGSDD------THINVWSY   79 (737)
Q Consensus        15 l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~------~H-~~~V~~l~~s~~g~~lasgs~d------g~V~vwd~   79 (737)
                      +.++.+-.+.-...+|.+.+..  -++.+..++++      .. ...-..+...|+| +++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            4455555555566778888754  23446666663      11 1234567888999 77776555      78999999


Q ss_pred             CCCeEEEEEccc-Cc-cceEEEEEeeCCCCCEEEEEE-------------------CCCcEEEEecCCCCCCCCCCCCCC
Q 004685           80 SSRKLLHSIETG-HS-ANVFCTKFVPETSDELVVSGA-------------------GDAEVRLFNLSRFSGRGLDDNAIT  138 (737)
Q Consensus        80 ~~~~~~~~~~~~-h~-~~V~~v~~sp~~~~~~l~sgs-------------------~dg~I~iwd~~~~~~~~~~~~~~~  138 (737)
                      .+.+.+.++..+ .. ..-..+.|+|+  ++.+++..                   .+.+|.+||+....          
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~--~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k----------  239 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLP--NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK----------  239 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETT--TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE----------
T ss_pred             CCCeEEEEEccCCCCccccceEEECCC--CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc----------
Confidence            999999888422 11 22345888999  68888874                   47899999998531          


Q ss_pred             CceeeccC--CCceeEEEE--ecCCCcEEEEEe-----CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee-ec
Q 004685          139 PSALYQCH--TRRVKKLAV--EVGNPHVVWSAS-----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR-SL  208 (737)
Q Consensus       139 ~~~~~~~h--~~~v~~l~~--~p~~~~~l~s~s-----~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  208 (737)
                      ....+..-  ......+.|  +|++...++++-     .+++|.+|....+..          .....+++...... .+
T Consensus       240 ~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~----------~~~~vIdi~~~~v~~~l  309 (462)
T 2ece_A          240 RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW----------NAEKVIEIPAEPLEGNL  309 (462)
T ss_dssp             EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE----------EEEEEEEECCEECCSSC
T ss_pred             EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce----------eEEEEEeCCCccccccc
Confidence            13333321  123445656  885544444444     677888877654320          11112222211100 01


Q ss_pred             cCCC----CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC---CcccccCCCCCCCCccccccccccCCCCcccc
Q 004685          209 ADPP----KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP---PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (737)
Q Consensus       209 ~~~~----~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (737)
                      ...+    ........|.++|++..++++.-..+.|.+||+....   .+..+.....    ...  +.+..+. .-...
T Consensus       310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~----~~~--~~~~~G~-~~~gg  382 (462)
T 2ece_A          310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGI----FHR--ADHPAGH-KLTGA  382 (462)
T ss_dssp             CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTT----TTC--BCCTTSC-CCCSC
T ss_pred             cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCe----ecc--ccccccc-cCCCC
Confidence            0000    0013467899999854444445567899999986322   1211111000    000  0000000 00002


Q ss_pred             eeEEEEcCCCCEEEEEe
Q 004685          282 LTHVTFSPNGEEVLLSY  298 (737)
Q Consensus       282 i~~v~~sp~g~~l~~g~  298 (737)
                      -..++++|||++|+++.
T Consensus       383 Pr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          383 PQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCEEECTTSSEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEc
Confidence            45689999999999998

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.03  E-value=0.00015  Score=70.41  Aligned_cols=210  Identities=7%  Similarity=-0.063  Sum_probs=125.0

Q ss_pred             cccceeecccCC--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685           40 LSQERELEGHQG--CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (737)
Q Consensus        40 ~~~~~~l~~H~~--~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  117 (737)
                      .+.+.++ .|..  -...|.|+ ++.++++.+.+|.|+++|+.+++.+..+ ......-..+++..   +.+++..-.++
T Consensus        43 ~~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g---~~Ly~ltw~~~  116 (268)
T 3nok_A           43 AHIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG---ERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS---SCEEEEESSSC
T ss_pred             eEEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC---CEEEEEEccCC
Confidence            3556666 3433  24788887 4677788889999999999999988776 33222223455543   35666666789


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      .+.+||..+..          .+..+.. ...-..+++  ++ ..|+.+..++.|.++|..+.+...           .+
T Consensus       117 ~v~V~D~~Tl~----------~~~ti~~-~~eGwGLt~--Dg-~~L~vSdGs~~l~~iDp~T~~v~~-----------~I  171 (268)
T 3nok_A          117 LLFTWSGMPPQ----------RERTTRY-SGEGWGLCY--WN-GKLVRSDGGTMLTFHEPDGFALVG-----------AV  171 (268)
T ss_dssp             EEEEEETTTTE----------EEEEEEC-SSCCCCEEE--ET-TEEEEECSSSEEEEECTTTCCEEE-----------EE
T ss_pred             EEEEEECCcCc----------EEEEEeC-CCceeEEec--CC-CEEEEECCCCEEEEEcCCCCeEEE-----------EE
Confidence            99999998633          2344432 222234444  34 455555568899999988876320           00


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (737)
                               .+.........++.+.|.  ++.+++....+..|.+.|.++++.+..+....        ..+........
T Consensus       172 ---------~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~--------L~~~~~~~~~~  232 (268)
T 3nok_A          172 ---------QVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASA--------LTRAVAGQVTN  232 (268)
T ss_dssp             ---------ECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHH--------HHHHHTTTCCC
T ss_pred             ---------EeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCC--------CcccccccccC
Confidence                     011111112345667777  35666666678899999999998666553210        00000000001


Q ss_pred             cccceeEEEEcCCCCEEEEEeC
Q 004685          278 SSLHLTHVTFSPNGEEVLLSYS  299 (737)
Q Consensus       278 ~~~~i~~v~~sp~g~~l~~g~~  299 (737)
                      ...-.+.|||+|+++.|++.+.
T Consensus       233 ~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          233 PEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTCCEEEEEECTTTCCEEEEET
T ss_pred             cCCceEEEEEcCCCCEEEEeCC
Confidence            1224788999998777766654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.02  E-value=0.0018  Score=65.65  Aligned_cols=245  Identities=9%  Similarity=0.007  Sum_probs=134.3

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC--
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--  117 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg--  117 (737)
                      .+.+..|... .....++|+++++++++-..++.|..||.... ....+  .....+.++++.++  +.++++.....  
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~--~~~~~p~gia~~~d--G~l~vad~~~~~~   95 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA--TVEGKVSGLAFTSN--GDLVATGWNADSI   95 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE--ECSSEEEEEEECTT--SCEEEEEECTTSC
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE--eCCCCceeEEEcCC--CcEEEEeccCCcc
Confidence            4444555433 45778999999998888778899999998764 33333  12356889999998  67766654433  


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      .|..++......        ..+... ........++..+ ++..+++-..++.|..+|...+...           ...
T Consensus        96 ~v~~~d~~~g~~--------~~~~~~-~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~-----------v~~  154 (306)
T 2p4o_A           96 PVVSLVKSDGTV--------ETLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS-----------IWL  154 (306)
T ss_dssp             EEEEEECTTSCE--------EEEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE-----------EEE
T ss_pred             eEEEEcCCCCeE--------EEEEeC-CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEe-----------EEE
Confidence            355566543221        001111 1122234455444 4455555556788888887643200           000


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCcccccCCCCCCCCccccccccccCCC
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (737)
                      ..   +... ...........+.+  +|++..++++-...+.|..||+.. +.. ..          ...+.  ..    
T Consensus       155 ~~---~~~~-~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~----------~~~~~--~~----  211 (306)
T 2p4o_A          155 EH---PMLA-RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GE----------PEIFV--EQ----  211 (306)
T ss_dssp             EC---GGGS-CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-CC----------CEEEE--ES----
T ss_pred             EC---Cccc-cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-Cc----------cEEEe--cc----
Confidence            00   0000 00001111234455  676545666667788999999874 211 00          00000  00    


Q ss_pred             CcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccee-eeec-CCCCeeeeec---cCCCCccC
Q 004685          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTV-GDASKIMSFT---PTLNGLEL  338 (737)
Q Consensus       277 ~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~-~~~~-~~~~~~~~~~---p~~~~~~~  338 (737)
                         .....++++++|+++++....+.|.+++.. ++.... .... ...+..++|.   |+...+..
T Consensus       212 ---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyV  274 (306)
T 2p4o_A          212 ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYV  274 (306)
T ss_dssp             ---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred             ---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEE
Confidence               124568999999876666668899999875 433211 1122 2456777887   66554433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.01  E-value=0.0072  Score=62.51  Aligned_cols=224  Identities=8%  Similarity=0.026  Sum_probs=137.0

Q ss_pred             CceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           51 GCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        51 ~~V~~l~~s~~g~~-lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      ..+.+++|++.... +++-...+.|..+++..+.....+ .........+++.+.. +.++++-...+.|.+.++.....
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~~  150 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHR  150 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCSC
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCce
Confidence            34678999975554 455556788999998876544333 2233456789998864 56666666678899998863211


Q ss_pred             CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                                .............++++|.++.++++-... +.|..+++......                       .+
T Consensus       151 ----------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-----------------------~~  197 (349)
T 3v64_C          151 ----------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-----------------------II  197 (349)
T ss_dssp             ----------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-----------------------ES
T ss_pred             ----------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-----------------------EE
Confidence                      112222335578999999776677666655 78888887654311                       01


Q ss_pred             cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (737)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s  288 (737)
                      .  .......+.++|+|.++.++++-...+.|..+|+..... ..+..             .      . ......+++ 
T Consensus       198 ~--~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~-------------~------~-~~~P~giav-  253 (349)
T 3v64_C          198 A--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVIS-------------Q------G-LPHPFAITV-  253 (349)
T ss_dssp             C--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-------------S------S-CSSEEEEEE-
T ss_pred             E--ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEe-------------C------C-CCCceEEEE-
Confidence            0  011235689999987666667766778999999874321 11100             0      0 112556777 


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCcceeeeec-CCCCeeeeeccCC
Q 004685          289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTL  333 (737)
Q Consensus       289 p~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~  333 (737)
                      .++..+++-...+.|..++..+++........ ..+.....++|..
T Consensus       254 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~  299 (349)
T 3v64_C          254 FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQR  299 (349)
T ss_dssp             ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGGG
T ss_pred             ECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEcccc
Confidence            34444444455789999997776655554433 3444445566654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.99  E-value=0.00075  Score=64.93  Aligned_cols=211  Identities=12%  Similarity=0.084  Sum_probs=123.8

Q ss_pred             cccceeecccC--CceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC
Q 004685           40 LSQERELEGHQ--GCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (737)
Q Consensus        40 ~~~~~~l~~H~--~~V~~l~~s~~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  115 (737)
                      .+.+.++ .|.  .-...|.|++ +.++.+.+.+|  .|+++|+.+++.+..+.......-..+++..   +.+++..-.
T Consensus         9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~---~~ly~ltw~   83 (243)
T 3mbr_X            9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR---DRLIQLTWR   83 (243)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---TEEEEEESS
T ss_pred             eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC---CEEEEEEee
Confidence            4555666 454  3467899986 66677777654  8999999999998887322221223344443   345555556


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      ++.+.+||..+..          .+..+.. ...-..++  +++..++++ ..++.|.++|..+.+...           
T Consensus        84 ~~~v~v~D~~tl~----------~~~ti~~-~~~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~-----------  138 (243)
T 3mbr_X           84 NHEGFVYDLATLT----------PRARFRY-PGEGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVG-----------  138 (243)
T ss_dssp             SSEEEEEETTTTE----------EEEEEEC-SSCCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEE-----------
T ss_pred             CCEEEEEECCcCc----------EEEEEeC-CCCceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEE-----------
Confidence            8999999998633          2344432 22223444  435455544 457889999988876320           


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                      .+         .+.........++.+.+.  ++..++..-.+..|.+.|.++++.+..+....-.+....      .  .
T Consensus       139 ~I---------~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~------~--~  199 (243)
T 3mbr_X          139 SI---------KVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA------L--T  199 (243)
T ss_dssp             EE---------ECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS------C--C
T ss_pred             EE---------EEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc------c--c
Confidence            00         011000111344566666  356666666788999999999987666542210000000      0  0


Q ss_pred             CCcccceeEEEEcCCCCEEEEEeC
Q 004685          276 GRSSLHLTHVTFSPNGEEVLLSYS  299 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g~~l~~g~~  299 (737)
                      .....-.+.+|++|+++.|++.+.
T Consensus       200 ~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          200 DSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             CTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCcCCceEEEEEcCCCCEEEEECC
Confidence            011224788999998887777765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.93  E-value=0.0049  Score=64.74  Aligned_cols=225  Identities=8%  Similarity=0.042  Sum_probs=136.3

Q ss_pred             CceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        51 ~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      ..+.+++|++.+. ++++-...+.|..+++..+.....+ .........+++.+.. +.++++-...+.|.+.++.....
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTT-TEEEEEETTTTEEEECBTTSCSC
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCC-CeEEEEcCCCCeEEEEeCCCCce
Confidence            4577899998555 5555566788999998876544433 2333456788998864 55666666678888887763211


Q ss_pred             CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                                ...+.........++++|.++.++++-... +.|..+++.....            ..+..         
T Consensus       194 ----------~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~---------  242 (386)
T 3v65_B          194 ----------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------------RIIAD---------  242 (386)
T ss_dssp             ----------EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC---------
T ss_pred             ----------EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------------EEEEE---------
Confidence                      112222335678999998676666665555 7788888765321            11110         


Q ss_pred             cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (737)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s  288 (737)
                          ......+.++|+|.++.++++-...+.|..+|+..... ..+..                  . . ......+++ 
T Consensus       243 ----~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~------------------~-~-~~~P~giav-  296 (386)
T 3v65_B          243 ----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVIS------------------Q-G-LPHPFAITV-  296 (386)
T ss_dssp             ----SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEEC------------------S-S-CSSEEEEEE-
T ss_pred             ----CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEE------------------C-C-CCCceEEEE-
Confidence                11234688999987666667767778899999864321 11100                  0 0 112566777 


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCcceeeeec-CCCCeeeeeccCCC
Q 004685          289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTLN  334 (737)
Q Consensus       289 p~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~~  334 (737)
                      ..+..+++-...+.|..++..+++....+... ..+.....++|..+
T Consensus       297 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q  343 (386)
T 3v65_B          297 FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQ  343 (386)
T ss_dssp             ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEESGGGS
T ss_pred             ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEEchhcC
Confidence            34444555555789999997776655554433 34444455566443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.89  E-value=0.0021  Score=63.62  Aligned_cols=190  Identities=7%  Similarity=0.024  Sum_probs=114.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEE----EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCC
Q 004685           63 SLLISGSDDTHINVWSYSSRKLL----HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAIT  138 (737)
Q Consensus        63 ~~lasgs~dg~V~vwd~~~~~~~----~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~  138 (737)
                      .+|+.+.. +.|+.++++.....    ..+.......+.+++|+++. +.++++-..++.|..+++.....         
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~-~~ly~~d~~~~~I~~~~~~g~~~---------   70 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD-KVVYWTDISEPSIGRASLHGGEP---------   70 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT-TEEEEEETTTTEEEEEESSSCCC---------
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCC-CEEEEEECCCCEEEEEecCCCCc---------
Confidence            34554443 47888888765321    11111223457899999973 45556666678999999864211         


Q ss_pred             CceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccce
Q 004685          139 PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL  218 (737)
Q Consensus       139 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  218 (737)
                       .............+++++.++.++++-...+.|.++++.....            ..+..             ......
T Consensus        71 -~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------------~~~~~-------------~~~~~P  124 (267)
T 1npe_A           71 -TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------------RVLFD-------------TGLVNP  124 (267)
T ss_dssp             -EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSE
T ss_pred             -EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE------------EEEEE-------------CCCCCc
Confidence             1122222246789999986666777777778999999864321            11110             011345


Q ss_pred             EEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEE
Q 004685          219 KSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (737)
Q Consensus       219 ~~i~~sp~~~~~l~t~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~  296 (737)
                      ..++++|+++.++++...  .+.|..+++.... ...+.             .     . . ......++++|++..|+.
T Consensus       125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~-------------~-----~-~-~~~P~gia~d~~~~~lyv  183 (267)
T 1npe_A          125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA-------------Q-----D-N-LGLPNGLTFDAFSSQLCW  183 (267)
T ss_dssp             EEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE-------------C-----T-T-CSCEEEEEEETTTTEEEE
T ss_pred             cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE-------------E-----C-C-CCCCcEEEEcCCCCEEEE
Confidence            789999965555555443  4688888875322 11110             0     0 0 113678999998887777


Q ss_pred             EeC-CCeEEEEEcCC
Q 004685          297 SYS-GEHVYLMDVNH  310 (737)
Q Consensus       297 g~~-dg~v~iwd~~~  310 (737)
                      +.. .+.|.++|+..
T Consensus       184 ~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          184 VDAGTHRAECLNPAQ  198 (267)
T ss_dssp             EETTTTEEEEEETTE
T ss_pred             EECCCCEEEEEecCC
Confidence            765 67999999865

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.86  E-value=0.012  Score=59.99  Aligned_cols=226  Identities=6%  Similarity=-0.025  Sum_probs=131.7

Q ss_pred             CceEEEEEcCCCC-EEEEEeCCCcEEEEECCC---CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685           51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (737)
Q Consensus        51 ~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~  126 (737)
                      ..+.+++|++.+. ++++-...+.|..+++.+   +.....+....-.....+++.+.. +.++++-...+.|.+.++..
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~-~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC-CeEEEEECCCCEEEEEeCCC
Confidence            4577999998655 455555678999999876   122222212222456789998753 55666666788999998863


Q ss_pred             CCCCCCCCCCCCCcee-eccCCCceeEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685          127 FSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (737)
Q Consensus       127 ~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (737)
                      ..           ... ..........++++|.++.++++.... +.|...++.....            ..+..     
T Consensus       109 ~~-----------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~------------~~~~~-----  160 (316)
T 1ijq_A          109 VK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT-----  160 (316)
T ss_dssp             SS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC-----
T ss_pred             Cc-----------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe------------EEEEE-----
Confidence            11           122 222335678999998666666665443 6788887754320            11110     


Q ss_pred             eeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (737)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (737)
                              ......+.++++++++.++++-...+.|..+|+.... ...+..                  ..........
T Consensus       161 --------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~------------------~~~~~~~P~g  213 (316)
T 1ijq_A          161 --------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILE------------------DEKRLAHPFS  213 (316)
T ss_dssp             --------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEE------------------CTTTTSSEEE
T ss_pred             --------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEee------------------cCCccCCcEE
Confidence                    1123568999998766666666677899999987422 111110                  0000012456


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeec-CCCCeeeeeccCC
Q 004685          285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTL  333 (737)
Q Consensus       285 v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~  333 (737)
                      +++. .+..+++-...+.|..++..+++....+... ..+.....++|..
T Consensus       214 iav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~v~~~~~  262 (316)
T 1ijq_A          214 LAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLT  262 (316)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGG
T ss_pred             EEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEecCCCCceEEEEecccc
Confidence            7774 3444455555789999998877654444322 3444555566543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.86  E-value=0.00019  Score=77.96  Aligned_cols=190  Identities=7%  Similarity=0.009  Sum_probs=116.3

Q ss_pred             ccccccccccccccccce--eecccCCceEEEEE-c-CCCCEEEEEe------------------CCCcEEEEECCCCeE
Q 004685           27 NHSLQMHSSLVRRLSQER--ELEGHQGCVNAISW-N-SKGSLLISGS------------------DDTHINVWSYSSRKL   84 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~--~l~~H~~~V~~l~~-s-~~g~~lasgs------------------~dg~V~vwd~~~~~~   84 (737)
                      +.+|..-|  ...++..+  ++. ....+..+++ + |+++++++++                  .++.|.++|.++++.
T Consensus       111 ~~rVavId--l~t~~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v  187 (595)
T 1fwx_A          111 NTRVARVR--CDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEV  187 (595)
T ss_dssp             TTEEEEEE--TTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEE
T ss_pred             CCEEEEEE--CCCceEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeE
Confidence            34444444  33444444  333 2245788998 5 8999998884                  346799999999998


Q ss_pred             EEEEcccCccceEEEEEeeCCCCCEEEEEECCC--------------------------------------cEEEEecCC
Q 004685           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDA--------------------------------------EVRLFNLSR  126 (737)
Q Consensus        85 ~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg--------------------------------------~I~iwd~~~  126 (737)
                      ..++.-+.  ....++++|+  +.++++.+.+.                                      .|.+.|.+.
T Consensus       188 ~~qI~Vgg--~pd~~~~spd--Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~  263 (595)
T 1fwx_A          188 AWQVLVSG--NLDNCDADYE--GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK  263 (595)
T ss_dssp             EEEEEESS--CCCCEEECSS--SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred             EEEEEeCC--CccceEECCC--CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcc
Confidence            88874322  4567889999  68887777553                                      234444432


Q ss_pred             CCCCCCCCCCCCC-ceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          127 FSGRGLDDNAITP-SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       127 ~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                      ..+        .. +..+. -.....++.++|++..+++++..+.+|.++|+.+.+..... .. .....+.        
T Consensus       264 ~~~--------~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~-~l-~~~~~v~--------  324 (595)
T 1fwx_A          264 EAS--------SLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE-NA-DPRSAVV--------  324 (595)
T ss_dssp             GGC--------CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS-CC-CGGGGEE--------
T ss_pred             cCC--------ceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc-cc-CcccceE--------
Confidence            100        11 12222 22345789999976566667777899999999864210000 00 0000011        


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~  247 (737)
                         ... .-......++|+|++ ..+++...|+.|.+||+..
T Consensus       325 ---~~v-~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          325 ---AEP-ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ---ECC-BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             ---EEc-CCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence               111 122456889999985 7777888999999999876

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.79  E-value=0.04  Score=63.97  Aligned_cols=213  Identities=9%  Similarity=0.034  Sum_probs=119.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC
Q 004685           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (737)
Q Consensus        53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~  132 (737)
                      |.++...+++.+.+ |+.++-|..||..+++............|.++...++  +.+. .|+.++-|.+||.....-...
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~--g~lw-igt~~~Gl~~~~~~~~~~~~~  250 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSP--TRIW-VATEGAGLFLINPKTKEIKNY  250 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEET--TEEE-EEEBSSCEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCC--CCEE-EEECCCCeEEEeCCCCeEEEe
Confidence            88888888776555 5655568899987776543221223567888888877  4544 455444488888764221100


Q ss_pred             CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCC
Q 004685          133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  212 (737)
Q Consensus       133 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (737)
                      ..   .......-....|.++...+ ++.+. .|+.+ .|.+||..+....             .+.....     ....
T Consensus       251 ~~---~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~~~~~~~~~~-------------~~~~~~~-----~~~~  306 (795)
T 4a2l_A          251 LH---SPSNPKSISSNYIRSLAMDS-QNRLW-IGTFN-DLNIYHEGTDSFA-------------SYSSNPV-----ENGS  306 (795)
T ss_dssp             CC---CTTCTTSCSCSBEEEEEECT-TSCEE-EEESS-CEEEEETTTTEEE-------------EECCCTT-----STTS
T ss_pred             ec---CCCCccccCCCeEEEEEEcC-CCCEE-EEeCC-hhheEcCCCCeEE-------------EEecCCC-----CCCC
Confidence            00   00000001235689998887 43444 55555 6899997655311             0000000     0001


Q ss_pred             CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCC
Q 004685          213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  292 (737)
Q Consensus       213 ~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~  292 (737)
                      .....|.++...+++  .|..|+.++-|..|+...... ..+....             . ..+-....|.++...++|.
T Consensus       307 l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~-~~~~~~~-------------~-~~~l~~~~V~~i~~d~~g~  369 (795)
T 4a2l_A          307 LSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRF-KNIRNIP-------------Y-KNSLSDNVVSCIVEDKDKN  369 (795)
T ss_dssp             CSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSS-EEECCCT-------------T-SSSCSCSSEEEEEECTTSC
T ss_pred             CCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccc-eEEcCCC-------------C-CCCCCCCeeEEEEECCCCC
Confidence            123568888888863  567788888899998765431 1111000             0 0111122499999999887


Q ss_pred             EEEEEeCCCeEEEEEcCCC
Q 004685          293 EVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       293 ~l~~g~~dg~v~iwd~~~~  311 (737)
                       |.+|+.++.|..|+..++
T Consensus       370 -lWiGt~~~Gl~~~~~~~~  387 (795)
T 4a2l_A          370 -LWIGTNDGGLNLYNPITQ  387 (795)
T ss_dssp             -EEEEESSSCEEEECTTTC
T ss_pred             -EEEEECCCCeEEEcCCCC
Confidence             566788878999987763

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.74  E-value=0.017  Score=59.67  Aligned_cols=199  Identities=9%  Similarity=0.028  Sum_probs=124.6

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      ...+|.+..+++.+++ +. ...|+..++........+ . ....+..++|.+.. +.++.+-...+.|..+++..... 
T Consensus        34 d~~~C~~~~~~~~ll~-~~-~~~I~~i~~~g~~~~~~~-~-~~~~~~~l~~d~~~-~~ly~~D~~~~~I~r~~~~g~~~-  107 (349)
T 3v64_C           34 DRRSCKALGPEPVLLF-AN-RIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSNV-  107 (349)
T ss_dssp             TSSCEEESSSCCEEEE-EC-BSCEEEECTTSCCEEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC-
T ss_pred             CCCcccccccCceeEe-ec-ccceEEEeCCCCeeEEee-c-CCCceEEEEEeccc-cEEEEEeccCCceEEEecCCCCc-
Confidence            3456766666443333 32 346888898776554433 2 33457899999874 45555555678899898874221 


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (737)
                               .............+++.+.++.++++-...+.|.+.++.....            ..+..           
T Consensus       108 ---------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~-----------  155 (349)
T 3v64_C          108 ---------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW-----------  155 (349)
T ss_dssp             ---------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-----------
T ss_pred             ---------eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce------------EEEEe-----------
Confidence                     1112222334578999886777777777788999999875431            11110           


Q ss_pred             CCCCccceEEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004685          211 PPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (737)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~t~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  289 (737)
                        ........++++|.++.++++-... +.|..+++..... ..+..                    ......+.++|+|
T Consensus       156 --~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~--------------------~~~~~PnGla~d~  212 (349)
T 3v64_C          156 --QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIAD--------------------THLFWPNGLTIDY  212 (349)
T ss_dssp             --TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCC--------------------SSCSCEEEEEEET
T ss_pred             --CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEE--------------------CCCCCcceEEEeC
Confidence              1123468899999766667776666 7888888764321 11100                    0111367899999


Q ss_pred             CCCEEEEEeC-CCeEEEEEcCC
Q 004685          290 NGEEVLLSYS-GEHVYLMDVNH  310 (737)
Q Consensus       290 ~g~~l~~g~~-dg~v~iwd~~~  310 (737)
                      ++..|+.+.. .+.|..+++..
T Consensus       213 ~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          213 AGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCEEEEEECCCCEEEEEeCCC
Confidence            8777777765 67899999875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.73  E-value=0.0057  Score=69.34  Aligned_cols=65  Identities=6%  Similarity=-0.010  Sum_probs=51.0

Q ss_pred             EecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccCC
Q 004685          644 SGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG  709 (737)
Q Consensus       644 sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~~  709 (737)
                      ....+|.|+.||+.||+.+=.+..+. ++....+...+.+++.++.||.|++||.++++.+-...-
T Consensus       433 ~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          433 AAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence            44567999999999999987776543 344455556678888899999999999999998866543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.73  E-value=0.0053  Score=69.65  Aligned_cols=54  Identities=15%  Similarity=0.239  Sum_probs=40.1

Q ss_pred             ccCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCce-EEEEecCCCC-eEEEEe
Q 004685          635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVV-NCVQCHPFDC-VVATSG  688 (737)
Q Consensus       635 ~s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V-~~v~~sp~~~-~l~S~~  688 (737)
                      +...+.+|+.|+.|+.+++||.++|+++-.+....+.. .-+.+..+++ +++.++
T Consensus       465 ~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          465 LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            45578899999999999999999999999987654322 2344556776 555544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.68  E-value=0.13  Score=59.67  Aligned_cols=217  Identities=11%  Similarity=0.083  Sum_probs=125.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc-------CccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-------HSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~-------h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw  122 (737)
                      ...|.+|...+++.+.+ |+.++-|.+||..+++..... ..       ....|.++...++  +.+.+ |+.+ -|.+|
T Consensus       214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~--g~lWi-gt~~-Gl~~~  287 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYL-HSPSNPKSISSNYIRSLAMDSQ--NRLWI-GTFN-DLNIY  287 (795)
T ss_dssp             CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEEC-CCTTCTTSCSCSBEEEEEECTT--SCEEE-EESS-CEEEE
T ss_pred             CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEee-cCCCCccccCCCeEEEEEEcCC--CCEEE-EeCC-hhheE
Confidence            45688888877777555 444445889998876544322 11       2356899988877  55554 4455 58888


Q ss_pred             ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                      +.....-.....   .+.....-....|.++...+ ++. |..|+.++.|..|+.......             .+....
T Consensus       288 ~~~~~~~~~~~~---~~~~~~~l~~~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~-------------~~~~~~  349 (795)
T 4a2l_A          288 HEGTDSFASYSS---NPVENGSLSQRSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIRNRFK-------------NIRNIP  349 (795)
T ss_dssp             ETTTTEEEEECC---CTTSTTSCSSSCEEEEEECT-TSC-EEEEESSSCEEEECGGGGSSE-------------EECCCT
T ss_pred             cCCCCeEEEEec---CCCCCCCCCCCcEEEEEEeC-CcC-EEEEECCCCeEEeCCCcccce-------------EEcCCC
Confidence            876422100000   00000011235689998887 434 556888888999987654311             000000


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC-CCcccc
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH-GRSSLH  281 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  281 (737)
                      .      ........|.++...+++  .|.+|+.++-|..||..+.... .+...             ..... +-....
T Consensus       350 ~------~~~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~~~-~~~~~-------------~~~~~~~l~~~~  407 (795)
T 4a2l_A          350 Y------KNSLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQRFT-SYTLQ-------------EDESARGIGSNN  407 (795)
T ss_dssp             T------SSSCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCCEE-EECCC-------------------CCSCSC
T ss_pred             C------CCCCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCcEE-EEecC-------------CCCcccCCCCcc
Confidence            0      001123458888887753  5667888888999998764321 11000             00000 001125


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       282 i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      |.+++..++|..|.+|+.++.|.+||..+++
T Consensus       408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             EEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence            8999999999867778887889999988754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.62  E-value=0.048  Score=57.36  Aligned_cols=228  Identities=7%  Similarity=-0.012  Sum_probs=133.4

Q ss_pred             cCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCC----eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004685           49 HQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd  123 (737)
                      ....+.+|+|++.+..| ++-...+.|..+++...    .....+ .........+++.+.. +.++++-...+.|.+.+
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavD~~~-~~lY~~d~~~~~I~~~~  187 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVAD  187 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-CSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEC
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-eCCCCCcccEEEEecC-CceEEEECCCCeEEEEe
Confidence            34567899999865544 45556788999998752    222222 3344567889999853 56666666778899888


Q ss_pred             cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                      +.....          ...+.........|+++|.++.++++-.. .+.|...++......            .+..   
T Consensus       188 ~~g~~~----------~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~------------~~~~---  242 (400)
T 3p5b_L          188 TKGVKR----------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY------------SLVT---  242 (400)
T ss_dssp             TTTCSE----------EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE------------EEEC---
T ss_pred             CCCCce----------EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE------------EEEE---
Confidence            763211          11222234457899999966666655433 367888887654311            1110   


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  282 (737)
                                ......+.+++++.++.++++-...+.|..+|+..... ..+..                 ..+.. ...
T Consensus       243 ----------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~-----------------~~~~l-~~P  293 (400)
T 3p5b_L          243 ----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILE-----------------DEKRL-AHP  293 (400)
T ss_dssp             ----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEE-----------------CSSTT-SSE
T ss_pred             ----------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEe-----------------CCCCC-CCC
Confidence                      11245688999987666666666678999999864322 11110                 00000 124


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeec-CCCCeeeeeccCC
Q 004685          283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTL  333 (737)
Q Consensus       283 ~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~  333 (737)
                      ..+++. .+..+++-...+.|..+|..+++........ ..+.....++|..
T Consensus       294 ~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~~  344 (400)
T 3p5b_L          294 FSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLT  344 (400)
T ss_dssp             EEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESGGG
T ss_pred             EEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEeecc
Confidence            456662 3344444455789999998887655544432 3344455566643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.59  E-value=0.0015  Score=64.15  Aligned_cols=194  Identities=11%  Similarity=0.075  Sum_probs=114.7

Q ss_pred             eEEEEEcccCccceEEEEEeeCCCCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCC
Q 004685           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGN  159 (737)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~  159 (737)
                      +.+.++..+.......++|+|+  +.++++.+.  ++.|.++|+.++.-          +..+. +.......+++.  +
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~d--g~Lyvstg~~~~s~v~~iD~~tg~v----------~~~i~l~~~~fgeGi~~~--g   75 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAEN--DTLFESTGLYGRSSVRQVALQTGKV----------ENIHKMDDSYFGEGLTLL--N   75 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECST--TEEEEEECSTTTCEEEEEETTTCCE----------EEEEECCTTCCEEEEEEE--T
T ss_pred             eEEEEEECCCCCCcccEEEeCC--CeEEEECCCCCCCEEEEEECCCCCE----------EEEEecCCCcceEEEEEe--C
Confidence            4556663222234689999997  555565543  68999999987432          23322 111122345554  4


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc
Q 004685          160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF  239 (737)
Q Consensus       160 ~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~  239 (737)
                      ..+.++.-.++.+.++|..+.+.+                      ..+...  .. .  .+.+++++ ..++++..++.
T Consensus        76 ~~lyv~t~~~~~v~viD~~t~~v~----------------------~~i~~g--~~-~--g~glt~Dg-~~l~vs~gs~~  127 (266)
T 2iwa_A           76 EKLYQVVWLKNIGFIYDRRTLSNI----------------------KNFTHQ--MK-D--GWGLATDG-KILYGSDGTSI  127 (266)
T ss_dssp             TEEEEEETTCSEEEEEETTTTEEE----------------------EEEECC--SS-S--CCEEEECS-SSEEEECSSSE
T ss_pred             CEEEEEEecCCEEEEEECCCCcEE----------------------EEEECC--CC-C--eEEEEECC-CEEEEECCCCe
Confidence            466666677899999999877532                      111111  00 1  12345554 44555557899


Q ss_pred             EEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcceeee
Q 004685          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRY  318 (737)
Q Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~  318 (737)
                      |.++|..+.+.+..+....                .+..-..++.+.|. +|. +++.. .++.|.+.|..+++......
T Consensus       128 l~viD~~t~~v~~~I~Vg~----------------~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          128 LYEIDPHTFKLIKKHNVKY----------------NGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLLGWIL  189 (266)
T ss_dssp             EEEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCcEEEEEEECC----------------CCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEEEEEE
Confidence            9999999877665543211                01111126678888 674 55555 57899999999987655543


Q ss_pred             ecC-------------CCCeeeeeccCCCCc
Q 004685          319 TVG-------------DASKIMSFTPTLNGL  336 (737)
Q Consensus       319 ~~~-------------~~~~~~~~~p~~~~~  336 (737)
                      ..+             ...+.++|+|..+.+
T Consensus       190 ~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l  220 (266)
T 2iwa_A          190 LPNLRKKLIDEGFRDIDVLNGIAWDQENKRI  220 (266)
T ss_dssp             CHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred             CCCcccccccccccccCceEEEEEcCCCCEE
Confidence            221             355778888875543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.59  E-value=0.00021  Score=77.64  Aligned_cols=222  Identities=12%  Similarity=0.136  Sum_probs=125.5

Q ss_pred             CCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCccceEEEEE-e-eCCCCCEEEEEE------------------CCCc
Q 004685           60 SKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKF-V-PETSDELVVSGA------------------GDAE  118 (737)
Q Consensus        60 ~~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~-s-p~~~~~~l~sgs------------------~dg~  118 (737)
                      +||++|+.... ++.|.+.|+.+.++...+.-.....+..+++ . |+  +.+++.++                  .++.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~--~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR--SNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB--CSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC--CcEEEEecccccccCCCCcccccccccCce
Confidence            37887776654 5679999999999887542223456889998 4 88  57777774                  2456


Q ss_pred             EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC---------------cEEEEEcCCCCCC
Q 004685          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---------------TLRQHDFRQGSSC  183 (737)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg---------------~I~vwdl~~~~~~  183 (737)
                      +.+.|..+..          ....+.-- .....++++|+ ++++++.+.+.               .|.+.|.......
T Consensus       177 vtvID~~t~~----------v~~qI~Vg-g~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~  244 (595)
T 1fwx_A          177 FTAVDADKWE----------VAWQVLVS-GNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  244 (595)
T ss_dssp             EEEEETTTTE----------EEEEEEES-SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             EEEEECCCCe----------EEEEEEeC-CCccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence            8888887521          12222211 13456788995 46666666442               3666665432211


Q ss_pred             CCCCCCCCccceEEEeccC--Cce--eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCC
Q 004685          184 PPAGSSHQECRNILLDLRC--GAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~  259 (737)
                      .............++|...  +..  ..+..    .....++.++|++...++++..+.+|.++|+.+.+...  .....
T Consensus       245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv----g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~--~~~l~  318 (595)
T 1fwx_A          245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YENAD  318 (595)
T ss_dssp             HHHTCSEEETTEEEEECSGGGCCSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HSCCC
T ss_pred             ccCCCeeEECcEEEEeCcccCCceeEEEEec----CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc--ccccC
Confidence            0000000012244555544  211  11111    12456789999864456666688999999998642100  00000


Q ss_pred             CCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Q 004685          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (737)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~  310 (737)
                      +...        ....-.-+.....++|+|+| ++++... |+.|.+||+.+
T Consensus       319 ~~~~--------v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          319 PRSA--------VVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             GGGG--------EEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             cccc--------eEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            0000        00000112247789999999 6666655 99999999987

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.58  E-value=0.0018  Score=62.88  Aligned_cols=189  Identities=12%  Similarity=0.103  Sum_probs=110.9

Q ss_pred             eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC--cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeE--EEEecC
Q 004685           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK--LAVEVG  158 (737)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~--l~~~p~  158 (737)
                      +.+.++..........+.|+ +  +.++.+.+.+|  .|+.+|+.+++-          +..+.- ......  +++.  
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~--~~LyestG~~g~S~v~~vD~~Tgkv----------~~~~~l-~~~~FgeGit~~--   95 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-N--GYFYESTGLNGRSSIRKVDIESGKT----------LQQIEL-GKRYFGEGISDW--   95 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-T--TEEEEEEEETTEEEEEEECTTTCCE----------EEEEEC-CTTCCEEEEEEE--
T ss_pred             EEEEEecCCCCcccceEEEE-C--CEEEEECCCCCCceEEEEECCCCcE----------EEEEec-CCccceeEEEEe--
Confidence            34556632233446889998 5  57778888776  899999987432          233321 223333  4443  


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC
Q 004685          159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (737)
Q Consensus       159 ~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg  238 (737)
                      +..+.+..-.++.+.+||..+.+.+                      ..+.. ..   .-..++  +++ ..|+.+..++
T Consensus        96 g~~ly~ltw~~~~v~v~D~~t~~~~----------------------~ti~~-~~---eG~glt--~dg-~~L~~SdGs~  146 (262)
T 3nol_A           96 KDKIVGLTWKNGLGFVWNIRNLRQV----------------------RSFNY-DG---EGWGLT--HND-QYLIMSDGTP  146 (262)
T ss_dssp             TTEEEEEESSSSEEEEEETTTCCEE----------------------EEEEC-SS---CCCCEE--ECS-SCEEECCSSS
T ss_pred             CCEEEEEEeeCCEEEEEECccCcEE----------------------EEEEC-CC---CceEEe--cCC-CEEEEECCCC
Confidence            4456656667899999999887633                      01111 01   112333  443 4555555678


Q ss_pred             cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcceee
Q 004685          239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMR  317 (737)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~  317 (737)
                      .|.++|..+.+.+..+....                .+..-..++.+.|. +|+ |+++. .++.|.+.|..+++.....
T Consensus       147 ~i~~iDp~T~~v~~~I~V~~----------------~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          147 VLRFLDPESLTPVRTITVTA----------------HGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGII  208 (262)
T ss_dssp             EEEEECTTTCSEEEEEECEE----------------TTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEE
T ss_pred             eEEEEcCCCCeEEEEEEecc----------------CCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEE
Confidence            89999999887665543210                11111135667776 675 55555 5889999999997755444


Q ss_pred             eec------------CCCCeeeeeccCCC
Q 004685          318 YTV------------GDASKIMSFTPTLN  334 (737)
Q Consensus       318 ~~~------------~~~~~~~~~~p~~~  334 (737)
                      ...            ....+.++|.|..+
T Consensus       209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~  237 (262)
T 3nol_A          209 DLNGILAEAGPLPSPIDVLNGIAWDKEHH  237 (262)
T ss_dssp             ECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred             ECCcCccccccccCcCCceEEEEEcCCCC
Confidence            322            23445667766543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.54  E-value=0.0015  Score=66.78  Aligned_cols=179  Identities=9%  Similarity=0.039  Sum_probs=107.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCce
Q 004685           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (737)
Q Consensus        62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (737)
                      +..|..++.++.|..+|.. ++....+ ......+.++...++  +. +..++.++.|..+|.. +..          ..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~~~~--g~-l~vgt~~~~l~~~d~~-g~~----------~~  170 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRF-KTKKAIYATPIVSED--GT-IYVGSNDNYLYAINPD-GTE----------KW  170 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEECTT--SC-EEEECTTSEEEEECTT-SCE----------EE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEE-cCCCceeeeeEEcCC--CE-EEEEcCCCEEEEECCC-CCE----------eE
Confidence            4567778888999999988 7766665 344455666666665  44 6667778999999987 221          22


Q ss_pred             eeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEE
Q 004685          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (737)
Q Consensus       142 ~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  221 (737)
                      .+......+.++.+.+ ++.++ .++  +.|..+| .+++.              ++...           .....+.++
T Consensus       171 ~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~--------------~~~~~-----------~~~~~~~~~  220 (330)
T 3hxj_A          171 RFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGTE--------------KWNFY-----------AGYWTVTRP  220 (330)
T ss_dssp             EEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSCE--------------EEEEC-----------CSSCCCSCC
T ss_pred             EEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcE--------------EEEEc-----------cCCcceece
Confidence            3333344566677766 44444 455  7899999 55431              12111           111345666


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC
Q 004685          222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE  301 (737)
Q Consensus       222 ~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg  301 (737)
                      ...++ + .+.+++.++.|..+|. +++.+..+..                    . ...+..+.+.+++. |.+++.+|
T Consensus       221 ~~~~~-g-~l~v~t~~~gl~~~~~-~g~~~~~~~~--------------------~-~~~~~~~~~~~~g~-l~v~t~~g  275 (330)
T 3hxj_A          221 AISED-G-TIYVTSLDGHLYAINP-DGTEKWRFKT--------------------G-KRIESSPVIGNTDT-IYFGSYDG  275 (330)
T ss_dssp             EECTT-S-CEEEEETTTEEEEECT-TSCEEEEEEC--------------------S-SCCCSCCEECTTSC-EEEECTTC
T ss_pred             EECCC-C-eEEEEcCCCeEEEECC-CCCEeEEeeC--------------------C-CCccccceEcCCCe-EEEecCCC
Confidence            67764 2 5666777888888874 3332222110                    0 00133355566664 77888898


Q ss_pred             eEEEEEcCCCC
Q 004685          302 HVYLMDVNHAG  312 (737)
Q Consensus       302 ~v~iwd~~~~~  312 (737)
                      .|..+|. +++
T Consensus       276 gl~~~d~-~g~  285 (330)
T 3hxj_A          276 HLYAINP-DGT  285 (330)
T ss_dssp             EEEEECT-TSC
T ss_pred             CEEEECC-CCc
Confidence            9999985 444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.53  E-value=0.038  Score=56.13  Aligned_cols=224  Identities=10%  Similarity=0.073  Sum_probs=132.9

Q ss_pred             ceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           52 CVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        52 ~V~~l~~s~~-g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      .+.+|+|++. +.++.+-...+.|..+++..+.....+....-.....+++.+.. +.++++-...+.|.++++..... 
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~~-  113 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSLR-  113 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCSC-
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC-CeEEEEECCCCEEEEEECCCCcE-
Confidence            4668999985 45555666778899999887632211112223456788998763 56666666778999999864211 


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (737)
                               .............++++|.++.++++-. ..+.|...++.....            ..+..          
T Consensus       114 ---------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~----------  162 (318)
T 3sov_A          114 ---------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN----------  162 (318)
T ss_dssp             ---------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC------------EEEEC----------
T ss_pred             ---------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe------------EEEEE----------
Confidence                     1112233456789999986655555542 357788888764321            11110          


Q ss_pred             CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC
Q 004685          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (737)
Q Consensus       210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  289 (737)
                         ......+.++|+|+++.++++=+..+.|..+|+.... ...+..                   +. ......+++..
T Consensus       163 ---~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~-------------------~~-~~~P~glav~~  218 (318)
T 3sov_A          163 ---SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVK-------------------GS-LPHPFALTLFE  218 (318)
T ss_dssp             ---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-------------------SC-CSCEEEEEEET
T ss_pred             ---CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEec-------------------CC-CCCceEEEEeC
Confidence               1123468999999766666666777899999986422 111110                   00 11245677753


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCcceeeee-cCCCCeeeeeccCC
Q 004685          290 NGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTL  333 (737)
Q Consensus       290 ~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~p~~  333 (737)
                       +..+.+-...+.|..++..+++....... ...+.....++|..
T Consensus       219 -~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~~~  262 (318)
T 3sov_A          219 -DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQR  262 (318)
T ss_dssp             -TEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEEECGGG
T ss_pred             -CEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEEecccc
Confidence             33444444578999999988775444433 24444455566643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.50  E-value=0.017  Score=60.50  Aligned_cols=197  Identities=8%  Similarity=0.027  Sum_probs=120.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCC
Q 004685           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (737)
Q Consensus        53 V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~  132 (737)
                      -+|.+..+.+ +|+.+ ....|+.+++........+ . ....+..++|.+.. +.++++-...+.|..+++.....   
T Consensus        79 ~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~~~-~~ly~~D~~~~~I~r~~~~g~~~---  150 (386)
T 3v65_B           79 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSNV---  150 (386)
T ss_dssp             SCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCE---
T ss_pred             CeECCccccc-eeEee-cCccceeeccCCCcEEEEe-c-CCCccEEEEEecCC-CeEEEEeCCCCcEEEEecCCCCc---
Confidence            3455555533 34333 3357899998876554433 2 33557899999863 45555656678899998874221   


Q ss_pred             CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCC
Q 004685          133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  212 (737)
Q Consensus       133 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (737)
                             .............+++++.++.++++-...+.|.+.++.....            ..+..             
T Consensus       151 -------~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~------------~~l~~-------------  198 (386)
T 3v65_B          151 -------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW-------------  198 (386)
T ss_dssp             -------EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC------------EEEEC-------------
T ss_pred             -------EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce------------EEeec-------------
Confidence                   1112222234567889886767777777778888888764321            11110             


Q ss_pred             CCccceEEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC
Q 004685          213 KQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (737)
Q Consensus       213 ~~~~~v~~i~~sp~~~~~l~t~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g  291 (737)
                      ........++++|.++.++++-... +.|..+++...... .+..                    ......+.++|+|++
T Consensus       199 ~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~--------------------~~~~~PnGlavd~~~  257 (386)
T 3v65_B          199 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIAD--------------------THLFWPNGLTIDYAG  257 (386)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEEC--------------------SSCSCEEEEEEEGGG
T ss_pred             CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EEEE--------------------CCCCCeeeEEEeCCC
Confidence            1123568899999766666666555 78888887643211 1100                    001136789999987


Q ss_pred             CEEEEEeC-CCeEEEEEcCC
Q 004685          292 EEVLLSYS-GEHVYLMDVNH  310 (737)
Q Consensus       292 ~~l~~g~~-dg~v~iwd~~~  310 (737)
                      ..|+.+.. .+.|..+|+..
T Consensus       258 ~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          258 RRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             TEEEEEETTTTEEEEECTTS
T ss_pred             CEEEEEECCCCEEEEEeCCC
Confidence            77777765 67899999765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.48  E-value=0.049  Score=60.33  Aligned_cols=65  Identities=6%  Similarity=-0.090  Sum_probs=43.4

Q ss_pred             cCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCc-eEEEEecCCCC-eEEEEecCCc----EEEEcCCC
Q 004685          636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATSGIDNT----IKIWTPSA  700 (737)
Q Consensus       636 s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~-V~~v~~sp~~~-~l~S~~~Dg~----i~lW~~~~  700 (737)
                      ...+..|+.|+.|+.+++||..||+++-.+...... -.-+.+.++++ |+++.+.++.    +..+++.+
T Consensus       472 ~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G~~g~~~~~~~~~~~~  542 (571)
T 2ad6_A          472 YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGVGLVFDLTD  542 (571)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTTTHHHHTTCCC
T ss_pred             EECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEECCCCCccceeEeccccC
Confidence            335677778999999999999999999888744321 22344678887 5555544433    33445544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.41  E-value=0.025  Score=58.90  Aligned_cols=207  Identities=11%  Similarity=0.014  Sum_probs=113.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (737)
Q Consensus        61 ~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (737)
                      ++..++.++.++.|..+|..+++.+..+ ............ .   +..++.++.++.|..+|..++..          +
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~-~~~~~~~~~p~~-~---~~~v~v~~~~g~l~~~d~~tG~~----------~  166 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQT-KVAGEALSRPVV-S---DGLVLIHTSNGQLQALNEADGAV----------K  166 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEE-ECSSCCCSCCEE-E---TTEEEEECTTSEEEEEETTTCCE----------E
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEE-eCCCceEcCCEE-E---CCEEEEEcCCCeEEEEECCCCcE----------E
Confidence            4567888889999999999999988776 322221111122 2   35788888899999999876432          1


Q ss_pred             eeeccCCCc-----eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCC-----------------CCC--------
Q 004685          141 ALYQCHTRR-----VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-----------------SSH--------  190 (737)
Q Consensus       141 ~~~~~h~~~-----v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~-----------------~~~--------  190 (737)
                      .........     .......  + ..++.++.++.|..+|..+++..-...                 ...        
T Consensus       167 W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~  243 (376)
T 3q7m_A          167 WTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVF  243 (376)
T ss_dssp             EEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEE
T ss_pred             EEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEE
Confidence            222111110     0112222  2 356677888889999987776431000                 000        


Q ss_pred             ---CccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685          191 ---QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (737)
Q Consensus       191 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (737)
                         .......++...+........    .....+...   +..+++++.++.|..+|..+++.+......          
T Consensus       244 ~~~~~g~l~~~d~~tG~~~w~~~~----~~~~~~~~~---~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~----------  306 (376)
T 3q7m_A          244 ALAYNGNLTALDLRSGQIMWKREL----GSVNDFIVD---GNRIYLVDQNDRVMALTIDGGVTLWTQSDL----------  306 (376)
T ss_dssp             EECTTSCEEEEETTTCCEEEEECC----CCEEEEEEE---TTEEEEEETTCCEEEEETTTCCEEEEECTT----------
T ss_pred             EEecCcEEEEEECCCCcEEeeccC----CCCCCceEE---CCEEEEEcCCCeEEEEECCCCcEEEeeccc----------
Confidence               011112222222322111111    112233332   347777788899999999887654332100          


Q ss_pred             ccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 004685          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (737)
Q Consensus       268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~  314 (737)
                              ...  .+.....  .+..|++++.+|.|+++|..+++..
T Consensus       307 --------~~~--~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          307 --------LHR--LLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             --------TTS--CCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             --------CCC--cccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence                    000  1112222  3567999999999999999997643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.40  E-value=0.013  Score=59.73  Aligned_cols=201  Identities=10%  Similarity=0.034  Sum_probs=111.3

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcc---c-CccceEEEEEee-CCCCCEEEEEEC----------
Q 004685           52 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVP-ETSDELVVSGAG----------  115 (737)
Q Consensus        52 ~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~---~-h~~~V~~v~~sp-~~~~~~l~sgs~----------  115 (737)
                      .+.+|++.+ +++++ .+...+.|..+|..+++.. .+..   + .......+++.+ +  |.++++-..          
T Consensus        81 ~p~gi~~~~~~g~l~-v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~--G~l~v~d~~~~~~~~~~~~  156 (322)
T 2fp8_A           81 RTYDISYNLQNNQLY-IVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRT--GIVYFTDVSTLYDDRGVQQ  156 (322)
T ss_dssp             CEEEEEEETTTTEEE-EEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTT--CCEEEEESCSSCCTTCHHH
T ss_pred             CCceEEEcCCCCcEE-EEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCC--CEEEEECCcccccccccce
Confidence            578999998 66544 4544456888997765422 2211   1 113468899999 7  677776432          


Q ss_pred             -------CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCC
Q 004685          116 -------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (737)
Q Consensus       116 -------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~  188 (737)
                             ++.|..||.....           +..+.........++++|++..++++-...+.|..|++......     
T Consensus       157 ~~~~~~~~g~v~~~d~~~~~-----------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~-----  220 (322)
T 2fp8_A          157 IMDTSDKTGRLIKYDPSTKE-----------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-----  220 (322)
T ss_dssp             HHHHTCCCEEEEEEETTTTE-----------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT-----
T ss_pred             ehcccCCCceEEEEeCCCCE-----------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC-----
Confidence                   3667777765321           11121122345679999944335555566789999998753210     


Q ss_pred             CCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC----------CCcEEEEECCCCCCcccccCCC
Q 004685          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRM  258 (737)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~----------Dg~i~iwd~~~~~~~~~~~~~~  258 (737)
                          ....+.           ..+   . ...++++++ ++++++...          .+.|..+|.. ++.+..+... 
T Consensus       221 ----~~~~~~-----------~~~---g-P~gi~~d~~-G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~-  278 (322)
T 2fp8_A          221 ----TAEVLV-----------KIP---N-PGNIKRNAD-GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP-  278 (322)
T ss_dssp             ----CEEEEE-----------ECS---S-EEEEEECTT-SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC-
T ss_pred             ----ccceEE-----------eCC---C-CCCeEECCC-CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC-
Confidence                001111           111   2 567889987 455555543          4667788764 4433322211 


Q ss_pred             CCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                                      .+.....++.+++ .++.++++....+.|.++++...
T Consensus       279 ----------------~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          279 ----------------PPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             ----------------TTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             ----------------CCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence                            0000113666666 45655555556789999998753

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.38  E-value=0.006  Score=59.20  Aligned_cols=188  Identities=10%  Similarity=0.021  Sum_probs=113.9

Q ss_pred             eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCcee--EEEEecCCC
Q 004685           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK--KLAVEVGNP  160 (737)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~p~~~  160 (737)
                      +.+.++..........+.|+.   +.++++.+.+|.|+.+|+.+++-          +..+  -.....  .+++.  +.
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~---~~Ly~stG~~g~v~~iD~~Tgkv----------~~~~--l~~~~FgeGit~~--g~  106 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQ---GHFFESTGHQGTLRQLSLESAQP----------VWME--RLGNIFAEGLASD--GE  106 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEET---TEEEEEETTTTEEEECCSSCSSC----------SEEE--ECTTCCEEEEEEC--SS
T ss_pred             EEEEEEcCCCccccceEEEEC---CEEEEEcCCCCEEEEEECCCCcE----------EeEE--CCCCcceeEEEEe--CC
Confidence            445555323334567888874   47888888899999999987432          2333  122233  35543  44


Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcE
Q 004685          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (737)
Q Consensus       161 ~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i  240 (737)
                      .+++..-.++.+.+||..+.+.+                      ..+.. .   ..-..++  ++ +..|+++..++.|
T Consensus       107 ~Ly~ltw~~~~v~V~D~~Tl~~~----------------------~ti~~-~---~eGwGLt--~D-g~~L~vSdGs~~l  157 (268)
T 3nok_A          107 RLYQLTWTEGLLFTWSGMPPQRE----------------------RTTRY-S---GEGWGLC--YW-NGKLVRSDGGTML  157 (268)
T ss_dssp             CEEEEESSSCEEEEEETTTTEEE----------------------EEEEC-S---SCCCCEE--EE-TTEEEEECSSSEE
T ss_pred             EEEEEEccCCEEEEEECCcCcEE----------------------EEEeC-C---CceeEEe--cC-CCEEEEECCCCEE
Confidence            66666778899999999887633                      01111 1   1113444  33 3566666678999


Q ss_pred             EEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcceeeee
Q 004685          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYT  319 (737)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~~  319 (737)
                      .++|..+.+.+..+....                .+..-..++.+.|. +|+ |+++. .++.|.+.|..+++.......
T Consensus       158 ~~iDp~T~~v~~~I~V~~----------------~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl  219 (268)
T 3nok_A          158 TFHEPDGFALVGAVQVKL----------------RGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDA  219 (268)
T ss_dssp             EEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred             EEEcCCCCeEEEEEEeCC----------------CCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence            999999887666553211                11111135677777 775 55555 578999999999875444332


Q ss_pred             c-------------CCCCeeeeeccCCC
Q 004685          320 V-------------GDASKIMSFTPTLN  334 (737)
Q Consensus       320 ~-------------~~~~~~~~~~p~~~  334 (737)
                      .             ....+.+++.|..+
T Consensus       220 ~~L~~~~~~~~~~~~~vlNGIA~dp~~~  247 (268)
T 3nok_A          220 SALTRAVAGQVTNPEAVLNGIAVEPGSG  247 (268)
T ss_dssp             HHHHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred             CCCcccccccccCcCCceEEEEEcCCCC
Confidence            2             23556677776543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.38  E-value=0.0092  Score=60.84  Aligned_cols=201  Identities=8%  Similarity=0.030  Sum_probs=112.3

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc-------------------CccceEEEEEeeCCCCCEEE
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-------------------HSANVFCTKFVPETSDELVV  111 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~-------------------h~~~V~~v~~sp~~~~~~l~  111 (737)
                      ....+++|+++++++.++..++.|..||..+++.. .+...                   ....+.++++.++. +. |+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~-g~-l~   95 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN-NQ-LY   95 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT-TE-EE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCC-Cc-EE
Confidence            34567899999998888888999999998765432 22110                   01357899999731 44 55


Q ss_pred             EEECCCcEEEEecCCCCCCCCCCCCCCCcee-ec-cCCCceeEEEEec-CCCcEEEEEeC-----------------CCc
Q 004685          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSAL-YQ-CHTRRVKKLAVEV-GNPHVVWSASE-----------------DGT  171 (737)
Q Consensus       112 sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~-~h~~~v~~l~~~p-~~~~~l~s~s~-----------------Dg~  171 (737)
                      .+...+.|..+|.......        .+.. .. ........+++.+ ++ .++++-..                 ++.
T Consensus        96 v~d~~~~i~~~d~~~g~~~--------~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~  166 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHAT--------QLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGR  166 (322)
T ss_dssp             EEETTTEEEEECTTCEECE--------EEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred             EEECCCCEEEEeCCCCEEE--------EecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCce
Confidence            5544555888876532110        0110 01 0123467788887 44 55544322                 245


Q ss_pred             EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004685          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (737)
Q Consensus       172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~  251 (737)
                      |..||..+++.                       ..+.   ........++|+|++..++++-...+.|.+|++..... 
T Consensus       167 v~~~d~~~~~~-----------------------~~~~---~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-  219 (322)
T 2fp8_A          167 LIKYDPSTKET-----------------------TLLL---KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-  219 (322)
T ss_dssp             EEEEETTTTEE-----------------------EEEE---EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-
T ss_pred             EEEEeCCCCEE-----------------------EEec---cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-
Confidence            66666544321                       0000   00123467899997433444546678999999875321 


Q ss_pred             ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC----------CCeEEEEEcC
Q 004685          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVN  309 (737)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~----------dg~v~iwd~~  309 (737)
                      ..          ...+.  .+      .. ...++++++|.+.++...          .+.|..+|..
T Consensus       220 ~~----------~~~~~--~~------~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          220 GT----------AEVLV--KI------PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             TC----------EEEEE--EC------SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             Cc----------cceEE--eC------CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence            00          00010  00      11 566899999986666554          3567777653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.37  E-value=0.089  Score=60.31  Aligned_cols=226  Identities=8%  Similarity=-0.012  Sum_probs=134.1

Q ss_pred             CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC----eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        50 ~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      ...+.+|+|++... ++++-...+.|+.+++...    .....+ .........|++.+.. +.++++-...+.|.+.++
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~l  500 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADT  500 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEET
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecC-CcEEEEecCCCeEEEEeC
Confidence            45677899998544 5555566788999998753    222223 3334567789999874 456666667889999998


Q ss_pred             CCCCCCCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          125 SRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                      ....           ...+ .........|+++|..+.++++-... +.|...++.....            ..+..   
T Consensus       501 dG~~-----------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~------------~~lv~---  554 (791)
T 3m0c_C          501 KGVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT---  554 (791)
T ss_dssp             TSSS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC---
T ss_pred             CCCe-----------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce------------EEEEe---
Confidence            7321           2222 22344578999999666666665333 6788888765431            11110   


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  282 (737)
                                ........|++++..+.++++=.....|..+++...... .+...                 .+.-. ..
T Consensus       555 ----------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-~v~~~-----------------~~~l~-~P  605 (791)
T 3m0c_C          555 ----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILED-----------------EKRLA-HP  605 (791)
T ss_dssp             ----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEEC-----------------TTTTS-SE
T ss_pred             ----------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-EEecC-----------------CCccC-CC
Confidence                      112457889999876666666566778999998643321 11100                 00001 13


Q ss_pred             eEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCcceeeee-cCCCCeeeeeccCCC
Q 004685          283 THVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTLN  334 (737)
Q Consensus       283 ~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~p~~~  334 (737)
                      ..|++  .+.+|+.+.. .+.|...|..+++....+.. ...+..+..|+|..+
T Consensus       606 ~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~Q  657 (791)
T 3m0c_C          606 FSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQ  657 (791)
T ss_dssp             EEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGS
T ss_pred             CEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeeccccC
Confidence            45665  3445666654 68899999888765554433 345555566776543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.36  E-value=0.048  Score=60.50  Aligned_cols=54  Identities=19%  Similarity=0.059  Sum_probs=39.6

Q ss_pred             cCCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCc-eEEEEecCCCC-eEEEEec
Q 004685          636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATSGI  689 (737)
Q Consensus       636 s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~-V~~v~~sp~~~-~l~S~~~  689 (737)
                      ...+.+|+.|+.|+.++.||.+||+++-+++-..+. ..-+.|..+|+ |+++.+.
T Consensus       481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG  536 (599)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence            346788888999999999999999999888754322 23356678886 5555443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.28  E-value=0.11  Score=52.64  Aligned_cols=184  Identities=13%  Similarity=0.079  Sum_probs=112.9

Q ss_pred             CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCcee
Q 004685           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK  151 (737)
Q Consensus        72 g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~  151 (737)
                      ..|+..|+.+.+....+ . ....+..++|.+.. +.++++-..++.|..+++.......      .....+........
T Consensus        10 ~~I~~i~~~~~~~~~~~-~-~~~~p~g~~~d~~~-~~ly~~D~~~~~I~~~~~~g~~~~~------~~~~~~~~~~~~p~   80 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLI-P-NLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAPD   80 (316)
T ss_dssp             SSEEEEETTSCCCEEEE-C-SCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCC
T ss_pred             CeEEEEECCCcceEehh-c-CCCceEEEEEEeCC-CEEEEEECCCCcEEEEECCCCCCCc------ccEEEEeCCCCCcC
Confidence            47999999887655544 2 34567899999873 4555666667899999887410000      00111222224557


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEE
Q 004685          152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL  231 (737)
Q Consensus       152 ~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l  231 (737)
                      .+++++.+++++++-...+.|.++++.....            ..+..             ........++++|.++.++
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~------------~~~~~-------------~~~~~P~~iavdp~~g~ly  135 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVVDPVHGFMY  135 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEE-------------CTTCCEEEEEEETTTTEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCce------------EEEEE-------------CCCCCcceEEeCCCCCEEE
Confidence            8999875667777777788999999764321            11111             0123567899999766566


Q ss_pred             EEEeCC-CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcC
Q 004685          232 LVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN  309 (737)
Q Consensus       232 ~t~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~  309 (737)
                      ++.... +.|..+++.... ...+.             .       ........++++|++..|+.+.. .+.|..+|+.
T Consensus       136 ~~d~~~~~~I~~~~~dG~~-~~~~~-------------~-------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          136 WTDWGTPAKIKKGGLNGVD-IYSLV-------------T-------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             EEECSSSCEEEEEETTSCC-EEEEE-------------C-------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEccCCCCeEEEEcCCCCC-eEEEE-------------E-------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            665443 688888875321 11110             0       01113678999998888877765 6799999987


Q ss_pred             C
Q 004685          310 H  310 (737)
Q Consensus       310 ~  310 (737)
                      .
T Consensus       195 g  195 (316)
T 1ijq_A          195 G  195 (316)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.27  E-value=0.059  Score=56.72  Aligned_cols=192  Identities=12%  Similarity=0.070  Sum_probs=118.3

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee
Q 004685           64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  143 (737)
Q Consensus        64 ~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  143 (737)
                      +|+.+. ...|+..++........+  .....+..++|.+.. +.++.+-...+.|+.+++.......      ......
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~-~~lywsD~~~~~I~~~~~~g~~~~~------~~~~~~  154 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVI  154 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTT-TEEEEEETTTTEEEEEEC------C------CCEEEE
T ss_pred             eeEEec-cceeEEEccCCcceeEec--cccCcceEEeeeecc-CceEEEecCCCeEEEEEcccCCCCC------cceEEE
Confidence            444443 368999999876554444  345678899999873 4455555567889888886421000      012222


Q ss_pred             ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEE
Q 004685          144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  223 (737)
Q Consensus       144 ~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  223 (737)
                      .........+++.+.+++++++-...+.|.+.++.....            ..+..             ........+++
T Consensus       155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~------------~~l~~-------------~~~~~P~~iav  209 (400)
T 3p5b_L          155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVV  209 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE------------EEEEE-------------CSSCCEEEEEE
T ss_pred             eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce------------EEEEe-------------CCCCCcceEEE
Confidence            223456788999886667777777788899988875431            11111             11234678999


Q ss_pred             ecCCCcEEEEEeC-CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CC
Q 004685          224 SSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE  301 (737)
Q Consensus       224 sp~~~~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg  301 (737)
                      +|.++.++.+-.. .+.|...++..........                     ........|+++|++..|+.+.. .+
T Consensus       210 dp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~---------------------~~l~~P~glavd~~~~~lY~aD~~~~  268 (400)
T 3p5b_L          210 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---------------------ENIQWPNGITLDLLSGRLYWVDSKLH  268 (400)
T ss_dssp             ETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC---------------------SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE---------------------CCCCceEEEEEEeCCCEEEEEECCCC
Confidence            9976656555433 3788888886432111100                     00114778999998888888765 67


Q ss_pred             eEEEEEcCCC
Q 004685          302 HVYLMDVNHA  311 (737)
Q Consensus       302 ~v~iwd~~~~  311 (737)
                      .|..+|+...
T Consensus       269 ~I~~~d~dG~  278 (400)
T 3p5b_L          269 SISSIDVNGG  278 (400)
T ss_dssp             EEEEEETTSC
T ss_pred             EEEEEeCCCC
Confidence            8999998753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.25  E-value=0.041  Score=55.51  Aligned_cols=199  Identities=10%  Similarity=0.075  Sum_probs=109.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           51 GCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      ..+.+|++.++|+++++.....  .|..+|..+++...............++..+.  +..+++-..++.|..+|.....
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~--~~~~v~d~~~g~i~~~d~~~~~  149 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD--TQYLTADSYRGAIWLIDVVQPS  149 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSS--SEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCC--CcEEEEECCCCeEEEEeCCCCc
Confidence            4688999999999766654432  47777877776543321112223345555554  3445554468888888876321


Q ss_pred             CCCC-CCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCC-CCCCCCCCCCCCccceEEEeccCCcee
Q 004685          129 GRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKR  206 (737)
Q Consensus       129 ~~~~-~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (737)
                      .... ....... ............+  +++++.++++-...+.|..+++.. +...         ....+...      
T Consensus       150 ~~v~~~~~~~~~-~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~---------~~~~~~~~------  211 (306)
T 2p4o_A          150 GSIWLEHPMLAR-SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG---------EPEIFVEQ------  211 (306)
T ss_dssp             EEEEEECGGGSC-SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC---------CCEEEEES------
T ss_pred             EeEEEECCcccc-ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC---------ccEEEecc------
Confidence            1100 0000000 0000111234455  675555666777788999999875 2210         00111110      


Q ss_pred             eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcc--cccCCCCCCCCccccccccccCCCCcccceeE
Q 004685          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT--SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (737)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (737)
                               .....++++++ ++++++....+.|.++|.. ++...  .+.                     ......++
T Consensus       212 ---------~~P~gi~vd~d-G~l~va~~~~~~V~~~~~~-G~~~~~~~~~---------------------~~~~~p~~  259 (306)
T 2p4o_A          212 ---------TNIDDFAFDVE-GNLYGATHIYNSVVRIAPD-RSTTIIAQAE---------------------QGVIGSTA  259 (306)
T ss_dssp             ---------CCCSSEEEBTT-CCEEEECBTTCCEEEECTT-CCEEEEECGG---------------------GTCTTEEE
T ss_pred             ---------CCCCCeEECCC-CCEEEEeCCCCeEEEECCC-CCEEEEeecc---------------------cccCCceE
Confidence                     13456888987 5777777778899999875 33211  110                     00113789


Q ss_pred             EEEc---CCCCEEEEEeCCC
Q 004685          285 VTFS---PNGEEVLLSYSGE  301 (737)
Q Consensus       285 v~~s---p~g~~l~~g~~dg  301 (737)
                      ++|.   |++..|++++..+
T Consensus       260 ~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          260 VAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEECCSTTTTTEEEEEECTT
T ss_pred             EEEecccCCCCEEEEECCCC
Confidence            9999   8988888877653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.24  E-value=0.03  Score=62.16  Aligned_cols=61  Identities=11%  Similarity=-0.083  Sum_probs=43.6

Q ss_pred             CCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEecCCcEEEEcCCCCCCccccC
Q 004685          647 DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG  708 (737)
Q Consensus       647 ~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~~Dg~i~lW~~~~~~~~~~~~  708 (737)
                      .+|.+..||+.||+.+=+..-- .++++-.....+.+++.++.||.|+.||.++++.+-..+
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            5689999999999988666421 222222223345667779999999999999999876543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.23  E-value=0.058  Score=59.82  Aligned_cols=60  Identities=12%  Similarity=0.302  Sum_probs=43.2

Q ss_pred             CCCCEEEEecCCCcEEEEEcCcccEEEEeecCCCce-EEEEecCCCC-eEEEEec-CCcEEEE
Q 004685          637 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVV-NCVQCHPFDC-VVATSGI-DNTIKIW  696 (737)
Q Consensus       637 ~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V-~~v~~sp~~~-~l~S~~~-Dg~i~lW  696 (737)
                      ..+.+|+.|+.|+.++.||.+||+++-.++...+.+ .-+.|..+|+ |++..+. -|.+-+|
T Consensus       495 tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G~gg~~~~~  557 (582)
T 1flg_A          495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLW  557 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHH
T ss_pred             eCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEccCCCccccc
Confidence            357788889999999999999999999988754433 2366778887 5555443 3434444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.20  E-value=0.014  Score=67.09  Aligned_cols=120  Identities=12%  Similarity=0.074  Sum_probs=70.7

Q ss_pred             ccCC-ceEEEEEc-CCCCEEEEEe-CC----CcEEEEECCCC-eEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---
Q 004685           48 GHQG-CVNAISWN-SKGSLLISGS-DD----THINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---  116 (737)
Q Consensus        48 ~H~~-~V~~l~~s-~~g~~lasgs-~d----g~V~vwd~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---  116 (737)
                      +|.. .+...+|| |||++||-+. .+    .+|+++|+.++ +.+...   -......++|+|+  ++.|+....|   
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspD--g~~l~y~~~d~~~  244 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPD--HTSLFYVTKDETL  244 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSS--TTEEEEEEECTTC
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecC--CCEEEEEEECCCC
Confidence            3443 67889999 9999887543 22    25999999998 632210   0122457889999  5666666554   


Q ss_pred             --CcEEEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeC--CCcEEEEEcCCC
Q 004685          117 --AEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQG  180 (737)
Q Consensus       117 --g~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~--Dg~I~vwdl~~~  180 (737)
                        ..|.++++.......        ...+. ........+.|+|++..++++...  ...|.++|+.++
T Consensus       245 ~~~~v~~~~lgt~~~~~--------~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSED--------VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             CEEEEEEEETTSCGGGC--------EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             CCCEEEEEECCCCchhc--------EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence              257777776432110        11221 223446788999955444444432  235777777664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.20  E-value=0.013  Score=56.39  Aligned_cols=173  Identities=14%  Similarity=0.042  Sum_probs=102.3

Q ss_pred             eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC--cEEEEecCCCCCCCCCCCCCCCceeeccCCCce--eEEEEecC
Q 004685           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV--KKLAVEVG  158 (737)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~p~  158 (737)
                      +.+..+.......+..+.|++.   .++.+.+.+|  .|+.+|+.++.-          +.... -....  -.+++.  
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~~---~LyestG~~g~S~v~~vD~~tgkv----------~~~~~-l~~~~fgeGi~~~--   73 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLRG---HLYESTGETGRSSVRKVDLETGRI----------LQRAE-VPPPYFGAGIVAW--   73 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEETT---EEEEEECCTTSCEEEEEETTTCCE----------EEEEE-CCTTCCEEEEEEE--
T ss_pred             EEEEEcCCCCccccccEEEECC---EEEEECCCCCCceEEEEECCCCCE----------EEEEe-CCCCcceeEEEEe--
Confidence            3455553233456779999863   6777777754  899999987432          22222 12222  234443  


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC
Q 004685          159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (737)
Q Consensus       159 ~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg  238 (737)
                      +.+++...-.++.+.+||..+.+.+                      ..+.. ..   .-..++  +++ ..|+++..++
T Consensus        74 ~~~ly~ltw~~~~v~v~D~~tl~~~----------------------~ti~~-~~---~Gwglt--~dg-~~L~vSdgs~  124 (243)
T 3mbr_X           74 RDRLIQLTWRNHEGFVYDLATLTPR----------------------ARFRY-PG---EGWALT--SDD-SHLYMSDGTA  124 (243)
T ss_dssp             TTEEEEEESSSSEEEEEETTTTEEE----------------------EEEEC-SS---CCCEEE--ECS-SCEEEECSSS
T ss_pred             CCEEEEEEeeCCEEEEEECCcCcEE----------------------EEEeC-CC---CceEEe--eCC-CEEEEECCCC
Confidence            4466666677899999999887633                      01111 11   113444  443 4555556689


Q ss_pred             cEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcceee
Q 004685          239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMR  317 (737)
Q Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~  317 (737)
                      .|.++|..+.+.+..+....                ++..-..++.+.|. +|+ |++.. .+..|.+.|..+++.....
T Consensus       125 ~l~~iDp~t~~~~~~I~V~~----------------~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          125 VIRKLDPDTLQQVGSIKVTA----------------GGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWI  186 (243)
T ss_dssp             EEEEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEE
T ss_pred             eEEEEeCCCCeEEEEEEEcc----------------CCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEE
Confidence            99999999887665553211                11111135667765 665 45554 5789999999998755443


Q ss_pred             e
Q 004685          318 Y  318 (737)
Q Consensus       318 ~  318 (737)
                      .
T Consensus       187 d  187 (243)
T 3mbr_X          187 D  187 (243)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.15  E-value=0.51  Score=54.38  Aligned_cols=217  Identities=8%  Similarity=0.071  Sum_probs=119.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc------cCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~------~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      ..|.+|...++|.+.+ |+.+ -|.+||..+++...-...      .....|.++...++  + .|..|+..+-|.+++.
T Consensus       211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~--g-~lWigt~~~Gl~~~~~  285 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKD--N-KLWIATELNGIMILDL  285 (781)
T ss_dssp             SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTT--S-EEEEEESSSCEEEEET
T ss_pred             CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCC--C-CEEEEeCCCCeEEECC
Confidence            4688998888887655 4444 688999877654322100      12356888888776  4 4555666556888887


Q ss_pred             CCCCCCCCCCCCC----CCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          125 SRFSGRGLDDNAI----TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       125 ~~~~~~~~~~~~~----~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      ....-.......+    ............|.++...+ .+. |..|+.++.|..++.......             .+..
T Consensus       286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~-------------~~~~  350 (781)
T 3v9f_A          286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTFH-------------TWSY  350 (781)
T ss_dssp             TCC---------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSCE-------------EEC-
T ss_pred             CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcce-------------eecc
Confidence            6532111000000    00000011345688988877 333 557887888999987754311             0000


Q ss_pred             cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (737)
                      ....   -.........|.++...++ + .|.+|+.++-|..||..+.... .+..            +     ..-...
T Consensus       351 ~~~~---~~~~~l~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~-~~~~------------~-----~~~~~~  407 (781)
T 3v9f_A          351 SPTQ---MNESSLSNKVVSSVCDDGQ-G-KLWIGTDGGGINVFENGKRVAI-YNKE------------N-----RELLSN  407 (781)
T ss_dssp             ---C---CCSSCCSSSCEEEEEECTT-S-CEEEEEBSSCEEEEETTEEEEE-CC----------------------CCCS
T ss_pred             Cccc---cccCCCCCcceEEEEEcCC-C-CEEEEeCCCcEEEEECCCCeEE-EccC------------C-----CCCCCc
Confidence            0000   0000112346788888775 3 5667776777889998653211 0000            0     001112


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .|.++...++|. |.+|+.++.|..+|..++
T Consensus       408 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~  437 (781)
T 3v9f_A          408 SVLCSLKDSEGN-LWFGTYLGNISYYNTRLK  437 (781)
T ss_dssp             BEEEEEECTTSC-EEEEETTEEEEEECSSSC
T ss_pred             ceEEEEECCCCC-EEEEeccCCEEEEcCCCC
Confidence            589999988887 555777778999987764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.09  E-value=0.094  Score=53.14  Aligned_cols=184  Identities=7%  Similarity=0.032  Sum_probs=112.2

Q ss_pred             CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCce
Q 004685           71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV  150 (737)
Q Consensus        71 dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v  150 (737)
                      ...|+.++++.......+.......+..++|.+.. +.++.+-...+.|..+++......         ...+.......
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~-~~lyw~D~~~~~I~r~~~~g~~~~---------~~~~~~~l~~p   81 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH-GLIYWSDVSEEAIKRTEFNKTESV---------QNVVVSGLLSP   81 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG-TEEEEEETTTTEEEEEETTSSSCC---------CEEEEECCSCC
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC-CEEEEEECCCCcEEEEEccCCCce---------EEEEcCCCCCc
Confidence            35799999987631111111223456789999864 455566666788999988743210         11222223456


Q ss_pred             eEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcE
Q 004685          151 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL  230 (737)
Q Consensus       151 ~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~  230 (737)
                      ..+++.+.++.++++-...+.|.++++.....            ..+..             ........++++|.++.+
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~-------------~~~~~P~giavdp~~g~l  136 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR------------KVLFW-------------QELDQPRAIALDPSSGFM  136 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSEEEEEEEGGGTEE
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE------------EEEEe-------------CCCCCccEEEEeCCCCEE
Confidence            78999876777777777788999999875431            11110             112346789999875555


Q ss_pred             EEEEe-CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEc
Q 004685          231 LLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDV  308 (737)
Q Consensus       231 l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~  308 (737)
                      +.+-. ..+.|..+++.... ...+..                    ......+.++|+|++..|+.+.. .+.|..+|+
T Consensus       137 y~td~~~~~~I~r~~~dG~~-~~~~~~--------------------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          137 YWTDWGEVPKIERAGMDGSS-RFIIIN--------------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             EEEECSSSCEEEEEETTSCS-CEEEEC--------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEecCCCCEEEEEEcCCCC-eEEEEE--------------------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            55542 35788888876322 111100                    00113678999998877777765 679999998


Q ss_pred             CC
Q 004685          309 NH  310 (737)
Q Consensus       309 ~~  310 (737)
                      ..
T Consensus       196 dG  197 (318)
T 3sov_A          196 DG  197 (318)
T ss_dssp             TS
T ss_pred             CC
Confidence            75

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.05  E-value=0.088  Score=60.33  Aligned_cols=187  Identities=12%  Similarity=0.066  Sum_probs=115.8

Q ss_pred             CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCce
Q 004685           71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV  150 (737)
Q Consensus        71 dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v  150 (737)
                      ...|+..++........+  .....+..|+|.+.. +.++++-...+.|+.+++.......      .....+.......
T Consensus       403 ~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~~-~~lY~sD~~~~~I~~~~l~g~~~~~------~~~~vi~~~l~~P  473 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAP  473 (791)
T ss_dssp             BSSEEEECTTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSCC
T ss_pred             ccceeEeeccCCcceeee--cCCCceEEEeecccC-CeeEEeeccceeEEEEeccCCCCCc------ceeEEEecCCCCc
Confidence            457888888876554433  234567899999863 4556666667889888886421100      0122222234556


Q ss_pred             eEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcE
Q 004685          151 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL  230 (737)
Q Consensus       151 ~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~  230 (737)
                      ..|++.+.+++++++-...+.|.+.++.....            ..+..             ........|+++|..+.+
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~------------~~l~~-------------~~l~~P~gIaVDp~~g~L  528 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVVDPVHGFM  528 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEE-------------CTTCCEEEEEEETTTTEE
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCeE------------EEEEe-------------CCCCCcceEEEecCCCCE
Confidence            78999986767888888889999999875431            11111             112346889999976656


Q ss_pred             EEEEeCC-CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEc
Q 004685          231 LLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDV  308 (737)
Q Consensus       231 l~t~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~  308 (737)
                      +++-... +.|...++..... ..+..                    ........|++++.+..|+.+.. .+.|..+++
T Consensus       529 YwtD~g~~~~I~~~~~dG~~~-~~lv~--------------------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          529 YWTDWGTPAKIKKGGLNGVDI-YSLVT--------------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             EEEECSSSCEEEEEETTSCCE-EEEEC--------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEecCCCCCeEEEEecCCCce-EEEEe--------------------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence            6655343 7788888864321 11110                    01114788999988887887765 578999998


Q ss_pred             CCCC
Q 004685          309 NHAG  312 (737)
Q Consensus       309 ~~~~  312 (737)
                      ....
T Consensus       588 dG~~  591 (791)
T 3m0c_C          588 NGGN  591 (791)
T ss_dssp             TSCS
T ss_pred             CCCc
Confidence            6543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.99  E-value=0.0043  Score=70.60  Aligned_cols=209  Identities=6%  Similarity=-0.037  Sum_probs=117.1

Q ss_pred             CceEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecC
Q 004685           51 GCVNAISWNSKGSLLISG-SDDTHINVWSYSS----RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasg-s~dg~V~vwd~~~----~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~  125 (737)
                      ..+.+|+|++.+..|+.+ ...+.|+.+++.+    ......+ .........|++.+.. +.++++-...+.|.++++.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-~~~~~~P~glavD~~~-g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-CSCC--CCCEECCCSS-SBCEECCTTTSCEEEEBSS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-eCCCCCcceEEEEeeC-CcEEEEeccCCeEEEEecC
Confidence            346689999866655544 4567899999875    2222212 1122345678887653 5666665667889999876


Q ss_pred             CCCCCCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685          126 RFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (737)
                      ...           ...+ .........|+++|.++.++++-... +.|..+++......            .+      
T Consensus       484 g~~-----------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~------------~l------  534 (699)
T 1n7d_A          484 GVK-----------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY------------SL------  534 (699)
T ss_dssp             SCC-----------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC------------EE------
T ss_pred             CCc-----------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee------------EE------
Confidence            421           1222 11223457788988665655554333 67777766543210            00      


Q ss_pred             ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (737)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (737)
                          +.   ......+.|+|+|+++.++++-...+.|..+|+.... ...+...                 . .......
T Consensus       535 ----~~---~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~-----------------~-~~~~~P~  588 (699)
T 1n7d_A          535 ----VT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILED-----------------E-KRLAHPF  588 (699)
T ss_dssp             ----SC---SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCC-----------------S-SSCSSCC
T ss_pred             ----Ee---CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEec-----------------C-CcCCCce
Confidence                00   0123456899999866777777778899999986432 1111100                 0 0000133


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceee
Q 004685          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR  317 (737)
Q Consensus       284 ~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~  317 (737)
                      .|++..+ .++++....+.|..++..+++....+
T Consensus       589 glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          589 SLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             CCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             EeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            4555443 33444445789999998876544333

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.97  E-value=0.26  Score=49.93  Aligned_cols=202  Identities=9%  Similarity=0.112  Sum_probs=116.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCC--CCC---EEEEEE-C--CCcEEEEecCCCCCCCCC
Q 004685           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET--SDE---LVVSGA-G--DAEVRLFNLSRFSGRGLD  133 (737)
Q Consensus        62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~---~l~sgs-~--dg~I~iwd~~~~~~~~~~  133 (737)
                      ..+++.....+-+.+||+ +|+.+..+ ..  ..++.+..-|.-  .+.   ++++.. .  +++|.+|++......   
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---  112 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---  112 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---
Confidence            356666677889999999 78888877 32  567777776631  011   233333 3  589999987532211   


Q ss_pred             CCCCCCceeec-------cCCCceeEEEE--ecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685          134 DNAITPSALYQ-------CHTRRVKKLAV--EVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (737)
Q Consensus       134 ~~~~~~~~~~~-------~h~~~v~~l~~--~p~~~-~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (737)
                            +..+.       .-...+..+++  +|..+ .++++...+|.+..|++.....-       .-....+      
T Consensus       113 ------l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g-------~~~~~lV------  173 (355)
T 3amr_A          113 ------LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG-------YISGKKV------  173 (355)
T ss_dssp             ------EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-------CEEEEEE------
T ss_pred             ------eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC-------cccceEE------
Confidence                  22221       11145566777  66444 36778888999999998542110       0000111      


Q ss_pred             ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (737)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (737)
                           ..+.. ...+-.|...+.. ..|+++-.+.-|..||.+......        ...+..+      ..++-...+.
T Consensus       174 -----R~f~l-gsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~--------~~~v~~~------~~g~l~aDvE  232 (355)
T 3amr_A          174 -----RAFKM-NSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSN--------GTVIDRA------DGRHLTRDIE  232 (355)
T ss_dssp             -----EEEEC-SSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSC--------CEEEEEB------SSSSBCSCEE
T ss_pred             -----EEecC-CCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCC--------ceEEEEe------cCCccccCcc
Confidence                 11111 2357788899864 688888888777777755221000        0000000      0112222477


Q ss_pred             EEEE--cCCCC-EEEEEeC-CCeEEEEEcCC
Q 004685          284 HVTF--SPNGE-EVLLSYS-GEHVYLMDVNH  310 (737)
Q Consensus       284 ~v~~--sp~g~-~l~~g~~-dg~v~iwd~~~  310 (737)
                      .|++  .++++ ||++++. ++.+.+||...
T Consensus       233 GLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          233 GLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             eEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            7777  56666 7777774 78999999973

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.90  E-value=0.45  Score=53.11  Aligned_cols=221  Identities=10%  Similarity=0.029  Sum_probs=135.3

Q ss_pred             CceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           51 GCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        51 ~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      ..+.+|+|++.+..| ++-..++.|..+++........+ .........+++.+.. ++++++-...+.|.+.++.....
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~~  114 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLG-KNLYWADTGTNRIEVSKLDGQHR  114 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSTTC
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCC-CEEEEEECCCCEEEEEecCCCcE
Confidence            457799999965554 45566789999998765443333 2233457789998764 55666666678899998863211


Q ss_pred             CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEE-eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                                .......-.....|+++|..+.++++- +..+.|...++.....            ..+.          
T Consensus       115 ----------~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------------~~l~----------  162 (628)
T 4a0p_A          115 ----------QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------------TTLV----------  162 (628)
T ss_dssp             ----------EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEE----------
T ss_pred             ----------EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------------EEEE----------
Confidence                      111113334568999999666666554 2356777777765431            1111          


Q ss_pred             cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (737)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s  288 (737)
                       .   .......+++++.++.++++-...+.|..+|+..... ..+.                  ....   ....+++.
T Consensus       163 -~---~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~------------------~~l~---~P~glav~  216 (628)
T 4a0p_A          163 -P---NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA------------------DDLP---HPFGLTQY  216 (628)
T ss_dssp             -C---SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE------------------ECCS---CEEEEEEE
T ss_pred             -C---CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee------------------ccCC---CceEEEEE
Confidence             0   1245689999997666666666778999999875332 1110                  0001   24467775


Q ss_pred             CCCCEEEEEe-CCCeEEEEEcCCCCcceeeeec-CCCCeeeeeccCC
Q 004685          289 PNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTL  333 (737)
Q Consensus       289 p~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~  333 (737)
                      . + .|+.+. ..+.|...|..+++....+... ..+.....++|..
T Consensus       217 ~-~-~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~  261 (628)
T 4a0p_A          217 Q-D-YIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSR  261 (628)
T ss_dssp             T-T-EEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGG
T ss_pred             C-C-EEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecc
Confidence            4 3 555555 4789999998887765544433 3344455666643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.90  E-value=0.037  Score=62.56  Aligned_cols=66  Identities=17%  Similarity=0.041  Sum_probs=47.7

Q ss_pred             CCCCEEEEecCCC-----------cEEEEEcCcccEEEEe--ecCCCceE-EEEecCCCCeEEEEecC-----------C
Q 004685          637 QRGDYIASGSDDG-----------RWFIWEKQTGRLIKML--LGDEAVVN-CVQCHPFDCVVATSGID-----------N  691 (737)
Q Consensus       637 ~d~~~l~sgs~D~-----------~i~iWd~~t~~~~~~l--~gH~~~V~-~v~~sp~~~~l~S~~~D-----------g  691 (737)
                      .++++++.|+.++           .|.+||..+.......  .-+..+.. +++..|++++++.||.+           .
T Consensus       409 ~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~  488 (656)
T 1k3i_A          409 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVF  488 (656)
T ss_dssp             TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCC
T ss_pred             CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCccc
Confidence            4677788877543           6889999988876654  33455543 34567899999999975           4


Q ss_pred             cEEEEcCCCCC
Q 004685          692 TIKIWTPSASV  702 (737)
Q Consensus       692 ~i~lW~~~~~~  702 (737)
                      .+.+||+.+.+
T Consensus       489 ~v~~ydp~t~~  499 (656)
T 1k3i_A          489 TPEIYVPEQDT  499 (656)
T ss_dssp             CCEEEEGGGTE
T ss_pred             ceEEEcCCCCc
Confidence            68999987754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.79  E-value=0.0086  Score=67.86  Aligned_cols=95  Identities=12%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             ccccccccccccccceeecc-cCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEcccCcc-ceEEEEEeeCC
Q 004685           29 SLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPET  105 (737)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~~s~~g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~h~~-~V~~v~~sp~~  105 (737)
                      .+.+|+....+...+..+.. +.....++++.+++++++.|+. +..+.+||..+.+....- ..+.. .-.+++..++ 
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~d-  297 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSD-  297 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTT-
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEecC-
Confidence            46677766666666655543 3333446778899999999984 568999999877544321 11222 2234556666 


Q ss_pred             CCCEEEEEE-CC-----CcEEEEecCC
Q 004685          106 SDELVVSGA-GD-----AEVRLFNLSR  126 (737)
Q Consensus       106 ~~~~l~sgs-~d-----g~I~iwd~~~  126 (737)
                       +.+++.|+ .+     ..+.+||..+
T Consensus       298 -g~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          298 -GRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             -SCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             -CeEEEEeCcccCCcccccceEeCCCC
Confidence             68888888 44     5689999875

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.78  E-value=0.41  Score=51.24  Aligned_cols=70  Identities=9%  Similarity=0.023  Sum_probs=47.9

Q ss_pred             CCCCEEEEecCCCcEEEEEcCcccEEEEeecC--------------C----------CceEEEEecCC-CCeEEEEecCC
Q 004685          637 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD--------------E----------AVVNCVQCHPF-DCVVATSGIDN  691 (737)
Q Consensus       637 ~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH--------------~----------~~V~~v~~sp~-~~~l~S~~~Dg  691 (737)
                      .+|+++++=...+.|+.++ .+| .+.++.|.              .          ..-.+|++.++ +.++++=....
T Consensus       389 ~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~  466 (496)
T 3kya_A          389 EEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGH  466 (496)
T ss_dssp             CCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCC
Confidence            4567777777788888888 566 45555543              1          23678999997 77777766788


Q ss_pred             cEEEEcCCCCCCccccC
Q 004685          692 TIKIWTPSASVPSIVSG  708 (737)
Q Consensus       692 ~i~lW~~~~~~~~~~~~  708 (737)
                      .||.++++.....+-.+
T Consensus       467 rIrki~~~~~~~~~~~~  483 (496)
T 3kya_A          467 TIRTISMEQEENVAGDE  483 (496)
T ss_dssp             EEEEEEECCCC------
T ss_pred             EEEEEECCCCcccccCC
Confidence            99999999988877444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.65  E-value=0.45  Score=53.04  Aligned_cols=186  Identities=6%  Similarity=-0.033  Sum_probs=117.5

Q ss_pred             CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004685           70 DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (737)
Q Consensus        70 ~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (737)
                      ....|+..++++......+....-..+..++|.+.. +.++.+-..++.|..+++.....          ...+......
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~-~~lywtD~~~~~I~r~~~~g~~~----------~~v~~~g~~~   81 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTD-NRIYWTDISLKTISRAFMNGSAL----------EHVVEFGLDY   81 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC----------EEEECSSCSC
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCC-CEEEEEECCCCeEEEEECCCCCc----------EEEEeCCCCC
Confidence            346899999987654333322233567899999974 55556666788899888864211          1122222245


Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCc
Q 004685          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH  229 (737)
Q Consensus       150 v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~  229 (737)
                      ...+++++.+++++++-...+.|.+.++.....            ..+..             .......+++++|..+.
T Consensus        82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~------------~~l~~-------------~~l~~P~~iavdp~~G~  136 (628)
T 4a0p_A           82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR------------QVLVW-------------KDLDSPRALALDPAEGF  136 (628)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSTTC------------EEEEC-------------SSCCCEEEEEEETTTTE
T ss_pred             cceEEEEeCCCEEEEEECCCCEEEEEecCCCcE------------EEEEe-------------CCCCCcccEEEccCCCe
Confidence            678999886777777777788999999875431            11110             11234589999997665


Q ss_pred             EEEEEe-CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEE
Q 004685          230 LLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMD  307 (737)
Q Consensus       230 ~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd  307 (737)
                      ++.+-. ..+.|...++..... ..+.                     ........+++++++..|+.+.. .+.|..+|
T Consensus       137 lY~tD~g~~~~I~r~~~dG~~~-~~l~---------------------~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d  194 (628)
T 4a0p_A          137 MYWTEWGGKPKIDRAAMDGSER-TTLV---------------------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSN  194 (628)
T ss_dssp             EEEEECSSSCEEEEEETTSCSC-EEEE---------------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCCEEEEEeCCCCce-EEEE---------------------CCCCCcceEEEccccCEEEEEECCCCEEEEEc
Confidence            555542 256777777764321 1110                     01114778999998888887766 67999999


Q ss_pred             cCCCCc
Q 004685          308 VNHAGG  313 (737)
Q Consensus       308 ~~~~~~  313 (737)
                      +.....
T Consensus       195 ~dG~~~  200 (628)
T 4a0p_A          195 MLGLNR  200 (628)
T ss_dssp             TTSCSC
T ss_pred             CCCCce
Confidence            876443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.57  E-value=0.41  Score=53.29  Aligned_cols=223  Identities=9%  Similarity=0.036  Sum_probs=129.2

Q ss_pred             CceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           51 GCVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasg-s~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      +.+.+|+|++.+..|+-+ ...+.|..++++.......+....-.....+++.+.. +.++++-...+.|.+.++.... 
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~-~~ly~~d~~~~~I~v~~~dG~~-  117 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSL-  117 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-CEEEEEeCCCCEEEEEECCCCC-
Confidence            456789999966655544 4567899999876532222213333568899999863 5566666678999999987421 


Q ss_pred             CCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       130 ~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                                ...+ ...-.....|+++|.++.++++-. ..+.|...++.....            ..+..        
T Consensus       118 ----------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~------------~~l~~--------  167 (619)
T 3s94_A          118 ----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN--------  167 (619)
T ss_dssp             ----------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC--------
T ss_pred             ----------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce------------EEEEe--------
Confidence                      1222 133445678999996666665542 245666666654321            11110        


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                           ......+.+++++.++.++++-...+.|..+|+...... .+..             ..   . .   ....+++
T Consensus       168 -----~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~-~~~~-------------~~---~-~---~P~gi~~  221 (619)
T 3s94_A          168 -----SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVK-------------GS---L-P---HPFALTL  221 (619)
T ss_dssp             -----SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------------------CCCEEE
T ss_pred             -----CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE-EEEe-------------CC---C-C---CceEEEE
Confidence                 112456899999976666666667788999988643211 1100             00   0 0   1235677


Q ss_pred             cCCCCEEEEEe-CCCeEEEEEcCCCCcceeeeec-CCCCeeeeeccCC
Q 004685          288 SPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTL  333 (737)
Q Consensus       288 sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~  333 (737)
                      ..+  .|+.+. ..+.|...|..+++........ ..+.....++|..
T Consensus       222 ~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~  267 (619)
T 3s94_A          222 FED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQR  267 (619)
T ss_dssp             SSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGG
T ss_pred             eCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEcccc
Confidence            655  555555 4789999999887655443332 3445555566643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.49  E-value=0.34  Score=51.35  Aligned_cols=158  Identities=11%  Similarity=0.042  Sum_probs=92.6

Q ss_pred             ceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC---Cc-EEEEecC
Q 004685           52 CVNAISWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AE-VRLFNLS  125 (737)
Q Consensus        52 ~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---g~-I~iwd~~  125 (737)
                      ...+|+|+|+  ...|..+...+.|+.+|..+++.....  .......+++|+++  +.++++....   .. +...+..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~d--G~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLN--GDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTT--CCEEEEECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCC--CCEEEEcCCCCcccceEEEEECC
Confidence            4578999985  344544444489999999877655433  34456899999999  6755554322   11 2222221


Q ss_pred             CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                      .  ..       .....+. .......++++|.++.++++-..++.|..+|..++...           ..+...     
T Consensus       216 ~--~~-------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-----------~~~~~~-----  269 (433)
T 4hw6_A          216 S--GF-------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-----------EEEVMM-----  269 (433)
T ss_dssp             G--TT-------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-----------EEEEEC-----
T ss_pred             C--Ce-------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-----------EEEecc-----
Confidence            1  10       0001111 23445678898866677766667788999988755410           011100     


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~  246 (737)
                         .    .......++|+|++..++++-...+.|+.++..
T Consensus       270 ---~----~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          270 ---D----TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             ---S----CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             ---C----CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence               0    011224699999853356666677899998875

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.45  E-value=0.17  Score=55.88  Aligned_cols=27  Identities=11%  Similarity=-0.043  Sum_probs=21.9

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCccee
Q 004685          290 NGEEVLLSYSGEHVYLMDVNHAGGRAM  316 (737)
Q Consensus       290 ~g~~l~~g~~dg~v~iwd~~~~~~~~~  316 (737)
                      .+..+++++.||.|+.||..+++..-.
T Consensus       474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~  500 (571)
T 2ad6_A          474 KGGLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence            466788899999999999999775433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.34  E-value=2.2  Score=49.03  Aligned_cols=222  Identities=10%  Similarity=0.011  Sum_probs=117.3

Q ss_pred             CceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEEcc-----cCccceEEEEEeeCCCCCEEEEEECCCcEEEEe
Q 004685           51 GCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIET-----GHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (737)
Q Consensus        51 ~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~~~~~~~~~-----~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd  123 (737)
                      ..|.+|....  ++.+ ..++.++-|..||..+++... +..     .....|.++...++  +. |..+..++-|..||
T Consensus       115 ~~i~~i~~d~~~~g~l-wi~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~--g~-lwigt~~~Gl~~~~  189 (781)
T 3v9f_A          115 NDVTHITSSVQAGKGL-WVCTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQTWTATEAED--GK-LYIGHVEGGLSILS  189 (781)
T ss_dssp             SCEEEEEECSSTTSEE-EEEESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCEEEEEEEET--TE-EEEEETTTEEEEEE
T ss_pred             CcceEEEecCccCCCE-EEEECCCCeeEEECCCCeEEe-eccCcccCCCccceEEEEECCC--CC-EEEEecCCCeEEEc
Confidence            3688888877  6664 446545568889987766433 311     12345888888776  44 44466665688888


Q ss_pred             cCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (737)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (737)
                      .....-....   ..+.....-....|.++...+ ++.+. .++.+ .+.+||..+.....               ....
T Consensus       190 ~~~~~~~~~~---~~~~~~~~l~~~~i~~i~~d~-~g~lw-igt~~-Gl~~~d~~~~~~~~---------------~~~~  248 (781)
T 3v9f_A          190 LNDKSVKHFV---HDPQNPNSLPGNDVRCIYKDT-NGNIW-IGTSK-GLALFNANTETFTN---------------FHNN  248 (781)
T ss_dssp             TTTTEEEEEC---C--------CCSSEEEEEECT-TCCEE-EEETT-EEEEEETTTTEEEC-------------------
T ss_pred             CCCCceEeee---cCCCCcccCCCCceeEEEEcC-CCCEE-EEeCC-cHheECCCCCcEEE---------------EEcC
Confidence            7642110000   000000001135688888877 44444 45555 68999976653110               0000


Q ss_pred             ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (737)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (737)
                      .   ..........|.++...++  ..|..|+..+-|.++|.............      ...+. ......+-....|.
T Consensus       249 ~---~~~~~l~~~~i~~i~~d~~--g~lWigt~~~Gl~~~~~~~~~~~~~~~~~------f~~~~-~~~~~~~l~~~~v~  316 (781)
T 3v9f_A          249 P---GNIHGALSSYIFSIKQLKD--NKLWIATELNGIMILDLQQNQFLLPEQIR------FEFIR-EGDNNYSLSNASAR  316 (781)
T ss_dssp             ----------CCCCEEEEEECTT--SEEEEEESSSCEEEEETTCC---------------CEEEC-BCSSTTSBSSSCEE
T ss_pred             C---CccccccCceEEEEEECCC--CCEEEEeCCCCeEEECCCCCeeeeeeccc------ccccc-CCCCCCCCCCCeEE
Confidence            0   0000012346888888775  36777777567889998765421110000      00000 00000111122599


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       284 ~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ++...++|. |-+|+.++.|..|+..+.
T Consensus       317 ~i~~D~~g~-lWigt~~~Gl~~~~~~~~  343 (781)
T 3v9f_A          317 YIFQDSFNN-IWIGTWGGGINFISNAPP  343 (781)
T ss_dssp             EEEECSSCC-EEEEEBSSCEEEECSSCC
T ss_pred             EEEEeCCCC-EEEEecCCeEEEeCCCCC
Confidence            999999887 667777778888887764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.17  E-value=3.3  Score=49.53  Aligned_cols=77  Identities=18%  Similarity=0.150  Sum_probs=53.6

Q ss_pred             CCceEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685           50 QGCVNAISWNSK------GSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (737)
Q Consensus        50 ~~~V~~l~~s~~------g~~lasgs~-dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw  122 (737)
                      .+.|.|+++.|.      +.++|.|.. |++|+|+++.+.+.+....-+......++.+.......+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999863      368999986 9999999999877665432122234455555433214578899999998877


Q ss_pred             ecCC
Q 004685          123 NLSR  126 (737)
Q Consensus       123 d~~~  126 (737)
                      .+..
T Consensus       633 ~~d~  636 (1158)
T 3ei3_A          633 GLNI  636 (1158)
T ss_dssp             EECT
T ss_pred             EEcC
Confidence            7654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.14  E-value=0.13  Score=54.50  Aligned_cols=158  Identities=7%  Similarity=0.005  Sum_probs=96.1

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-CC----cEEEEecC
Q 004685           52 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA----EVRLFNLS  125 (737)
Q Consensus        52 ~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg----~I~iwd~~  125 (737)
                      ....|+|+| ++..|..+...+.|+.+|+.++......  ........++|+++  ++.|+.+.. ++    .+..++..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~--G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHE--ADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTT--SSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCC--CCEEEEEeCCCCcccceEEEEeCC
Confidence            457899998 4555555554488999999877654433  24456889999999  675544443 22    23333322


Q ss_pred             CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                      . ..        .....+. .......++++|.++.++++-..++.|..++.......            .+.       
T Consensus       214 g-~~--------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~------------~~~-------  264 (430)
T 3tc9_A          214 S-GF--------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT------------PLF-------  264 (430)
T ss_dssp             G-TS--------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE------------EEE-------
T ss_pred             C-ce--------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE------------EEE-------
Confidence            1 11        1012222 13345778899966677777777789999998754310            011       


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~  247 (737)
                          ... .......++|+|++..++++-...+.|..++...
T Consensus       265 ----~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          265 ----TIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             ----ECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ----EcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence                000 1134578999998532566666778999988753

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.08  E-value=1.7  Score=45.15  Aligned_cols=235  Identities=11%  Similarity=0.110  Sum_probs=134.5

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCC
Q 004685           57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA  136 (737)
Q Consensus        57 ~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~  136 (737)
                      -.+|..+.||-=. ..++.|+|+++.+.++.+.  ....|..-+|-..   +.|+-.+ +..|+-|++....        
T Consensus        72 IMnP~~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~---~~l~lVT-~taVyHWsi~~~s--------  136 (494)
T 1bpo_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGES--------  136 (494)
T ss_dssp             EECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEET---TEEEEEC-SSEEEEEESSSSC--------
T ss_pred             eeCCCCcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCC---CeEEEEc-CCeeEEecccCCC--------
Confidence            3577777777655 5799999999999888873  4567888888876   4555544 6789999986421        


Q ss_pred             CCCceeeccC----CCceeEEEEecCCCcEEEEEe------CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685          137 ITPSALYQCH----TRRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (737)
Q Consensus       137 ~~~~~~~~~h----~~~v~~l~~~p~~~~~l~s~s------~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (737)
                       .|...+..|    ...|..-..+++..-++++|-      -.|.+.+|..+.....  ...                  
T Consensus       137 -~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ--~ie------------------  195 (494)
T 1bpo_A          137 -QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIE------------------  195 (494)
T ss_dssp             -CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE--EEC------------------
T ss_pred             -CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc--hhe------------------
Confidence             345555444    245666667774433343332      2467788887765421  111                  


Q ss_pred             eccCCCCCccceEEEEEe--cCCCcEEEEEeC---CCcEEEEECCCC-CCcccccCCCCCCCCccccccccccCCCCccc
Q 004685          207 SLADPPKQTLSLKSCDIS--STRPHLLLVGGS---DAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (737)
Q Consensus       207 ~~~~~~~~~~~v~~i~~s--p~~~~~l~t~s~---Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (737)
                            +|......+.+.  +....+++.+..   .+.++|.++... .....+..     .....+.+.    ..... 
T Consensus       196 ------Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k-----k~vdv~fpp----e~~~D-  259 (494)
T 1bpo_A          196 ------GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK-----KAVDVFFPP----EAQND-  259 (494)
T ss_dssp             ------CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC-----EEEECCCCT----TSTTC-
T ss_pred             ------eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc-----eeeeeeCCc----ccccC-
Confidence                  111111111111  100123333322   378999998543 11111100     000111111    11111 


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccCCCCCC
Q 004685          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIH  343 (737)
Q Consensus       281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  343 (737)
                      --.++..++....++.-+.-|.|++||+.++.......-..+++-..+......++......+
T Consensus       260 FPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G  322 (494)
T 1bpo_A          260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG  322 (494)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC
T ss_pred             ceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc
Confidence            255788999999999999999999999999987776666666666655555544444433333

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.08  E-value=0.12  Score=51.78  Aligned_cols=179  Identities=7%  Similarity=0.044  Sum_probs=104.3

Q ss_pred             cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeecc----C--CCceeEEEE---ecCCCc
Q 004685           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----H--TRRVKKLAV---EVGNPH  161 (737)
Q Consensus        91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----h--~~~v~~l~~---~p~~~~  161 (737)
                      ...-.-.+++|.+.. +.++++.-..++|..|+.......        .+ .+..    .  ...+..|.|   .|. +.
T Consensus        10 ~~~~yPE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~~--------~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-gr   78 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSHF--------NV-VIDGASSNGDGEQQMSGLSLLTHDNS-KR   78 (334)
T ss_dssp             CTTCCCSCEEEETTT-TEEEEEETTTTEEEEECTTTCCEE--------EE-CCTTTCCSSCCSEEEEEEEESSSSSC-CE
T ss_pred             CcccCCcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeEE--------EE-ecCCccccCCCcceeeEEEEeccCCC-Cc
Confidence            334455688999863 444555557999999998632110        01 1111    0  113578999   674 56


Q ss_pred             EEEEEe-------------CCCcEEEEEcC---CCCCCCCCCCCCCccceEEEeccCCceeeccC-CCCCccceEEEEEe
Q 004685          162 VVWSAS-------------EDGTLRQHDFR---QGSSCPPAGSSHQECRNILLDLRCGAKRSLAD-PPKQTLSLKSCDIS  224 (737)
Q Consensus       162 ~l~s~s-------------~Dg~I~vwdl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~s  224 (737)
                      ++++..             .+..|..+|+.   +++..            ...++..-. ..+.. ..........++..
T Consensus        79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~------------~~~dL~~~~-~~~~~~~g~~~~~~nDvavD  145 (334)
T 2p9w_A           79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV------------WSVNFEKVQ-DEFEKKAGKRPFGVVQSAQD  145 (334)
T ss_dssp             EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS------------EEEESHHHH-HHHHHHHSSCCEEEEEEEEC
T ss_pred             EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEE------------EEecCcccc-ccccccccccccCCceeEEC
Confidence            666433             15779999998   55532            111111000 00000 00012357899999


Q ss_pred             cCCCcEEEEEeCC-CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeE
Q 004685          225 STRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV  303 (737)
Q Consensus       225 p~~~~~l~t~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v  303 (737)
                      ++ ++..++++.. +.|..++.... .+..+....+               ........+.|+++|+|..|++....|.+
T Consensus       146 ~~-GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~---------------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L  208 (334)
T 2p9w_A          146 RD-GNSYVAFALGMPAIARVSADGK-TVSTFAWESG---------------NGGQRPGYSGITFDPHSNKLIAFGGPRAL  208 (334)
T ss_dssp             TT-SCEEEEEEESSCEEEEECTTSC-CEEEEEECCC---------------CSSSCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred             CC-CCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCC---------------CcccccCcceEEEeCCCCEEEEEcCCCeE
Confidence            97 6888888887 77777766533 2221111000               01111237789999999999999889999


Q ss_pred             EEEEcCC
Q 004685          304 YLMDVNH  310 (737)
Q Consensus       304 ~iwd~~~  310 (737)
                      ..+|+.+
T Consensus       209 ~~fD~~~  215 (334)
T 2p9w_A          209 TAFDVSK  215 (334)
T ss_dssp             EEEECSS
T ss_pred             EEEcCCC
Confidence            9999884

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.03  E-value=0.27  Score=54.35  Aligned_cols=28  Identities=11%  Similarity=-0.039  Sum_probs=22.7

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCcceee
Q 004685          290 NGEEVLLSYSGEHVYLMDVNHAGGRAMR  317 (737)
Q Consensus       290 ~g~~l~~g~~dg~v~iwd~~~~~~~~~~  317 (737)
                      .+..++.++.|+.++.||.++++.+-..
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence            4667888999999999999998754443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.01  E-value=0.51  Score=54.06  Aligned_cols=116  Identities=14%  Similarity=0.091  Sum_probs=67.4

Q ss_pred             eEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeE--EEEEcccCccceEEEEEeeCCCCCEEEEEEC---CCcEEEE
Q 004685           53 VNAISWNSKGSLLISGSDD-----THINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLF  122 (737)
Q Consensus        53 V~~l~~s~~g~~lasgs~d-----g~V~vwd~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~iw  122 (737)
                      ...++|+|||+.|+....|     ..|.++++.++..  ...+..........+.|+|+  +.+|+..+.   ...|.++
T Consensus       223 ~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~l~~~  300 (751)
T 2xe4_A          223 NGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD--TNTLCIGSQSPETAEVHLL  300 (751)
T ss_dssp             CSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT--SSEEEEEEECSSCEEEEEE
T ss_pred             eeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCC--CCEEEEEecCCCCceEEEE
Confidence            3468899999887766654     3688889887642  22331123345678899999  677665542   3457788


Q ss_pred             ecCCCCCCCCCCCCCCC-ceee-ccCCCceeEEEEecCCCcEEEEEeCC--C--cEEEEEcCC
Q 004685          123 NLSRFSGRGLDDNAITP-SALY-QCHTRRVKKLAVEVGNPHVVWSASED--G--TLRQHDFRQ  179 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~-~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~D--g--~I~vwdl~~  179 (737)
                      |+......        . +..+ ........++.|+. ++.+++....+  +  .|..+|+.+
T Consensus       301 d~~~~~~~--------~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          301 DLRKGNAH--------NTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             ESSSCTTC--------CCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             ECCCCCCC--------ceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            88753211        1 0212 22344556666554 55566565554  2  455666543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.98  E-value=0.31  Score=48.89  Aligned_cols=169  Identities=10%  Similarity=0.053  Sum_probs=102.0

Q ss_pred             ecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEccc----C--ccceEEEEE---eeCCCCCEEEEEE-
Q 004685           46 LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETG----H--SANVFCTKF---VPETSDELVVSGA-  114 (737)
Q Consensus        46 l~~H~~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~----h--~~~V~~v~~---sp~~~~~~l~sgs-  114 (737)
                      +.+...--.+++|++... ++++.-..++|..||...+.........    .  ...+..|.|   .|+  +.++++.. 
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~--grL~vv~~~   85 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS--KRLFAVMKN   85 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC--CEEEEEEEE
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC--CcEEEEEcc
Confidence            444444556789988555 4455547899999999865433332121    1  124689999   576  56776543 


Q ss_pred             ------------CCCcEEEEecC---CCCCCCCCCCCCCCceeecc-----------CCCceeEEEEecCCCcEEEEEeC
Q 004685          115 ------------GDAEVRLFNLS---RFSGRGLDDNAITPSALYQC-----------HTRRVKKLAVEVGNPHVVWSASE  168 (737)
Q Consensus       115 ------------~dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~l~~~p~~~~~l~s~s~  168 (737)
                                  .+..|..||+.   +.....        ...+..           -......++..+ .++..++++.
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~--------~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~  156 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVW--------SVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFAL  156 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSE--------EEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEE
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCCEEE--------EecCccccccccccccccccCCceeEECC-CCCEEEeCCC
Confidence                        26779999988   432110        111111           112478999999 5677778887


Q ss_pred             C-CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004685          169 D-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (737)
Q Consensus       169 D-g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~  246 (737)
                      - +.|...+.....             ...+.+...       ........+.|+++|++ ++|++....+.|..+|++
T Consensus       157 ~~~~I~rV~pdG~~-------------~~~~~~~~~-------~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          157 GMPAIARVSADGKT-------------VSTFAWESG-------NGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             SSCEEEEECTTSCC-------------EEEEEECCC-------CSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECS
T ss_pred             CCCeEEEEeCCCCE-------------EeeeeecCC-------CcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCC
Confidence            7 776666654331             111211110       11123457899999974 666666669999999988

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.89  E-value=0.051  Score=61.74  Aligned_cols=166  Identities=9%  Similarity=0.031  Sum_probs=98.3

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC-CcEEEEecCCCCC
Q 004685           52 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSG  129 (737)
Q Consensus        52 ~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-g~I~iwd~~~~~~  129 (737)
                      ....|++.+ .+.++++-...+.|.++++........+ .........|++.|.. +.++++-... +.|..+++.....
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~~  531 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-REQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDI  531 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-CCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCCC
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-eCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCCe
Confidence            345688885 4455565566789999998765433333 2233456788999874 4455443333 6777776653111


Q ss_pred             CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeecc
Q 004685          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (737)
                                .......-.....|+|+|.++.++++-+..+.|..+++.....            ..+           .
T Consensus       532 ----------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~------------~~~-----------~  578 (699)
T 1n7d_A          532 ----------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTI-----------L  578 (699)
T ss_dssp             ----------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC------------EEE-----------C
T ss_pred             ----------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce------------EEE-----------E
Confidence                      1111112234578999997777777777788999999864321            111           1


Q ss_pred             CCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004685          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (737)
Q Consensus       210 ~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~  254 (737)
                      ..........++++..  ..++++....+.|..+|..+++.+..+
T Consensus       579 ~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          579 EDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             CCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             ecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCCceEEe
Confidence            1001112234455554  357777777889999998777655554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.84  E-value=1.8  Score=48.03  Aligned_cols=202  Identities=7%  Similarity=-0.002  Sum_probs=119.6

Q ss_pred             CceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCC
Q 004685           51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (737)
Q Consensus        51 ~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~  129 (737)
                      ..+.+|+|.+.+. ++++-...+.|+.++++.......+ ...-.....+++.+.+ ++++++-...+.|.+.++.... 
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~~-~~lY~tD~~~~~I~v~~~~G~~-  425 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWVA-RNLYWTDTGTDRIEVTRLNGTM-  425 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEeccc-CcEEEEeCCCCcEEEEeCCCCe-
Confidence            3467899998554 4445556788999998764433333 3333567789998753 5666666677899999887421 


Q ss_pred             CCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       130 ~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                                ...+ ...-.....|+++|..+.++++-. ....|...++.....            ..+..        
T Consensus       426 ----------~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~------------~~l~~--------  475 (619)
T 3s94_A          426 ----------RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR------------VVLVN--------  475 (619)
T ss_dssp             ----------CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC--------
T ss_pred             ----------EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc------------EEEEe--------
Confidence                      1222 223456789999996666665542 235676666654321            11110        


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                           ......+.+++++..+.++++=+..+.|..+++..... ..+..             ..   ..    ....+++
T Consensus       476 -----~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~~~-------------~~---l~----~P~glav  529 (619)
T 3s94_A          476 -----TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR-RVLVE-------------DK---IP----HIFGFTL  529 (619)
T ss_dssp             -----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEEE-------------CC---CC----SSCCEEE
T ss_pred             -----CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce-EEEec-------------cC---CC----CcEEEEE
Confidence                 11245688999987555555555667899998864321 11100             00   00    1234555


Q ss_pred             cCCCCEEEEEeC-CCeEEEEEcCCCCc
Q 004685          288 SPNGEEVLLSYS-GEHVYLMDVNHAGG  313 (737)
Q Consensus       288 sp~g~~l~~g~~-dg~v~iwd~~~~~~  313 (737)
                      ..+  +|+.+.. .+.|...|..++..
T Consensus       530 ~~~--~ly~tD~~~~~I~~~~k~~g~~  554 (619)
T 3s94_A          530 LGD--YVYWTDWQRRSIERVHKRSAER  554 (619)
T ss_dssp             ETT--EEEEECTTSSCEEEEESSSCCE
T ss_pred             ECC--EEEEeecCCCeEEEEEcCCCce
Confidence            433  5666655 67888888888743

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.69  E-value=1.3  Score=42.75  Aligned_cols=167  Identities=10%  Similarity=0.096  Sum_probs=98.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEEc-----ccCccceEEEEEeeCCCCCEEEEEECCCcEEEE
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---LHSIE-----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~---~~~~~-----~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iw  122 (737)
                      ...-.|++.+++.++++.-.++.+.++++.....   +....     .........++|.|.  ++.|.++.......||
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~--~~~L~va~E~~p~~i~  147 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ--DHTFWFFKEKNPIEVY  147 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT--TTEEEEEEESSSEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC--CCEEEEEECcCCceEE
Confidence            4567888888888777766778899998765432   22221     123455789999998  4566555555455555


Q ss_pred             ecCCCCCCCCCCCCCCCceee-------ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccce
Q 004685          123 NLSRFSGRGLDDNAITPSALY-------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~  195 (737)
                      .+......       ..+..+       ..+...+.+++++|..+++++.....+.+..+|.....             .
T Consensus       148 ~~~g~~~~-------~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-------------~  207 (255)
T 3qqz_A          148 KVNGLLSS-------NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-------------I  207 (255)
T ss_dssp             EEESTTCS-------SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------------E
T ss_pred             EEcccccC-------CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-------------E
Confidence            55410000       001111       11234578999999888888888888999999976431             1


Q ss_pred             EEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~  245 (737)
                      ..+.+..+.    ..........-.|+|.++ ++++++ +..+.++.|..
T Consensus       208 ~~~~L~~g~----~~l~~~~~qpEGia~d~~-G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          208 GEMSLTKGS----RGLSHNIKQAEGVAMDAS-GNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEEECSTTG----GGCSSCCCSEEEEEECTT-CCEEEE-ETTTEEEEEEC
T ss_pred             EEEEcCCcc----CCcccccCCCCeeEECCC-CCEEEE-cCCceEEEEEe
Confidence            222222111    001111235678999997 565555 66677766643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.63  E-value=0.12  Score=54.87  Aligned_cols=158  Identities=9%  Similarity=0.053  Sum_probs=90.9

Q ss_pred             ceEEEEEee-CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC---
Q 004685           95 NVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---  170 (737)
Q Consensus        95 ~V~~v~~sp-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg---  170 (737)
                      ....|+++| +  +..|..+...+.|+.+|+....           +..+.........++|++++..++++...++   
T Consensus       138 ~P~~lavdp~~--~g~Lyv~d~~~~I~~id~~~~~-----------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~  204 (430)
T 3tc9_A          138 GAVWLSFDPKN--HNHLYLVGEQHPTRLIDFEKEY-----------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDR  204 (430)
T ss_dssp             CCCEEEEETTE--EEEEEEEEBTEEEEEEETTTTE-----------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTS
T ss_pred             CCCEEEECCCC--CCeEEEEeCCCcEEEEECCCCE-----------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCccc
Confidence            357889997 4  2445555444788888887422           3333334556889999994432554444322   


Q ss_pred             -cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          171 -TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       171 -~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                       .+.+++. .+...         ....           +..    ......++++|+++.++++-..++.|..|+.....
T Consensus       205 ~~v~~~~~-~g~~~---------~~~~-----------l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~  259 (430)
T 3tc9_A          205 PNNYILTR-ESGFK---------VITE-----------LTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE  259 (430)
T ss_dssp             EEEEEEEG-GGTSC---------SEEE-----------EEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred             ceEEEEeC-CCcee---------eeee-----------ecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence             2333332 22210         0000           100    12346788999556777777778899999987543


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~  310 (737)
                      ......                   .+. ......++|+|+|++|+.+.. .+.|..++...
T Consensus       260 ~~~~~~-------------------~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          260 TTPLFT-------------------IQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEEEE-------------------CSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEEEE-------------------cCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            110000                   000 113567999999997666654 78999988764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.97  E-value=3.6  Score=41.97  Aligned_cols=71  Identities=11%  Similarity=0.164  Sum_probs=45.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEEc--ccCccceEEEEEeeC---CCCCEEEEEECC-----Cc
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE--TGHSANVFCTKFVPE---TSDELVVSGAGD-----AE  118 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~--~~~~~--~~h~~~V~~v~~sp~---~~~~~l~sgs~d-----g~  118 (737)
                      .....|+|.|+|+++++ ..+|.|.+++  .++.  +..+.  .........|+|+|+   . +.++++-...     +.
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~-g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQE-PYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEECTTSSEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCC-CEEEEEEecCCCCCccE
Confidence            34678999999996555 5569999998  3432  22220  122456899999996   3 4555554433     56


Q ss_pred             EEEEecC
Q 004685          119 VRLFNLS  125 (737)
Q Consensus       119 I~iwd~~  125 (737)
                      |..|+..
T Consensus       107 v~r~~~~  113 (352)
T 2ism_A          107 VVRLRHL  113 (352)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            7777765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=94.87  E-value=0.9  Score=48.09  Aligned_cols=173  Identities=9%  Similarity=0.034  Sum_probs=98.1

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEE-cccCccceEEEEEeeCCCCC-EEEEEECCCcEEEEecCCCC
Q 004685           52 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        52 ~V~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~iwd~~~~~  128 (737)
                      ....++++| +|.++++-..++.|+.+|..++.....+ ..+....-..++|+|+  ++ ++++-...+.|..++.....
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd--G~~LYvad~~~~~I~~~~~d~~~  306 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT--GDWAYIIYNGKHCIYRVDYNRET  306 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT--SSEEEEEETTTTEEEEEEBCTTT
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC--CCEEEEEeCCCCEEEEEeCCCCC
Confidence            456788999 7777777667789999999877653332 1122223457999999  67 55555667889998876322


Q ss_pred             CCCCCCCCCCCceeecc---------------CCCceeEEEE---------ecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 004685          129 GRGLDDNAITPSALYQC---------------HTRRVKKLAV---------EVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~---------------h~~~v~~l~~---------~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~  184 (737)
                      +..      .....+.+               .-.....+++         .+ ++.++++-.....|+.++. .+... 
T Consensus       307 ~~~------~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~-~G~v~-  377 (433)
T 4hw6_A          307 GKL------AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP-EGRVT-  377 (433)
T ss_dssp             CCB------CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT-TSEEE-
T ss_pred             ccc------CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEECC-CCCEE-
Confidence            110      00001111               1234567888         44 5567766667788888874 22210 


Q ss_pred             CCCCCCCccceEEEecc----CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004685          185 PAGSSHQECRNILLDLR----CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (737)
Q Consensus       185 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~  246 (737)
                                 .+....    .+.................++++|.++.++++=..+.+|+.++++
T Consensus       378 -----------t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          378 -----------TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             -----------EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             -----------EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                       011000    000000000011223567899995456677776777889888764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.81  E-value=2.9  Score=41.50  Aligned_cols=93  Identities=8%  Similarity=0.077  Sum_probs=48.0

Q ss_pred             cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEEcccCccce-EEEEEe
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIETGHSANV-FCTKFV  102 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~d----g~V~vwd~~~~~~~~~~~~~h~~~V-~~v~~s  102 (737)
                      ..+..++....+...+..+......-.++.  .++.+++.|+.+    ..+.+||..+.+-...- ....... .+++. 
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~-   99 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL-GPPTPRDSLAACA-   99 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE-CCSSCCBSCEEEE-
T ss_pred             ceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC-CCCccccceeEEE-
Confidence            344455544444444433332222222222  256777777754    67889999887643322 1111111 12222 


Q ss_pred             eCCCCCEEEEEECC------CcEEEEecCC
Q 004685          103 PETSDELVVSGAGD------AEVRLFNLSR  126 (737)
Q Consensus       103 p~~~~~~l~sgs~d------g~I~iwd~~~  126 (737)
                      -+  +.+++.|+.+      ..+.+||+..
T Consensus       100 ~~--~~iyv~GG~~~~~~~~~~~~~~d~~~  127 (306)
T 3ii7_A          100 AE--GKIYTSGGSEVGNSALYLFECYDTRT  127 (306)
T ss_dssp             ET--TEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred             EC--CEEEEECCCCCCCcEeeeEEEEeCCC
Confidence            24  5677777765      4588888875

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.81  E-value=3.8  Score=41.22  Aligned_cols=198  Identities=11%  Similarity=0.077  Sum_probs=102.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE-EEecCCCC
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR-LFNLSRFS  128 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~-iwd~~~~~  128 (737)
                      .+.+..|.+.+++..++.+ .++.|.. ..+.++.-..........+..+++.|+  +.+++.+. +|.+. -+|-.   
T Consensus       121 ~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~--~~~~~~g~-~G~~~~S~d~g---  192 (327)
T 2xbg_A          121 PGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPS--GEYVAVSS-RGSFYSTWEPG---  192 (327)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTT--SCEEEEET-TSSEEEEECTT---
T ss_pred             CCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCC--CcEEEEEC-CCcEEEEeCCC---
Confidence            3457788887777766655 4555432 223444333332445667899999987  56666554 44443 33321   


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                      +..     +..+  -......+..+.+.++ +.++ .++.+|.+.+.+...++.               |.       .+
T Consensus       193 G~t-----W~~~--~~~~~~~~~~~~~~~~-g~~~-~~~~~G~~~~s~~D~G~t---------------W~-------~~  241 (327)
T 2xbg_A          193 QTA-----WEPH--NRTTSRRLHNMGFTPD-GRLW-MIVNGGKIAFSDPDNSEN---------------WG-------EL  241 (327)
T ss_dssp             CSS-----CEEE--ECCSSSCEEEEEECTT-SCEE-EEETTTEEEEEETTEEEE---------------EC-------CC
T ss_pred             CCc-----eeEC--CCCCCCccceeEECCC-CCEE-EEeCCceEEEecCCCCCe---------------eE-------ec
Confidence            110     1111  1234567888998884 4554 455678777664221210               00       00


Q ss_pred             cCC-CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          209 ADP-PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       209 ~~~-~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                      ... ......+.++.+.++ +.+++++ .++.| ++....++.-..+..                . ... ...+.++.|
T Consensus       242 ~~~~~~~~~~~~~v~~~~~-~~~~~~g-~~g~i-~~S~DgG~tW~~~~~----------------~-~~~-~~~~~~v~~  300 (327)
T 2xbg_A          242 LSPLRRNSVGFLDLAYRTP-NEVWLAG-GAGAL-LCSQDGGQTWQQDVD----------------V-KKV-PSNFYKILF  300 (327)
T ss_dssp             BCTTSSCCSCEEEEEESSS-SCEEEEE-STTCE-EEESSTTSSCEECGG----------------G-TTS-SSCCCEEEE
T ss_pred             cCCcccCCcceEEEEecCC-CEEEEEe-CCCeE-EEeCCCCcccEEcCc----------------c-CCC-CCCeEEEEE
Confidence            000 011235778888875 4555554 46766 344443322111100                0 000 013677888


Q ss_pred             cCCCCEEEEEeCCCeEEEEEc
Q 004685          288 SPNGEEVLLSYSGEHVYLMDV  308 (737)
Q Consensus       288 sp~g~~l~~g~~dg~v~iwd~  308 (737)
                      .+++ .+++++.+|.|.-++-
T Consensus       301 ~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          301 FSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             EETT-EEEEECSTTEEEEECC
T ss_pred             ECCC-ceEEEcCCceEEEEcC
Confidence            7555 4777778888877654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.65  E-value=1.1  Score=47.91  Aligned_cols=174  Identities=13%  Similarity=0.110  Sum_probs=97.3

Q ss_pred             ceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEEcccC---ccceEEEEE-------eeCCCCCEEEEEECCC-c
Q 004685           52 CVNAISWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGH---SANVFCTKF-------VPETSDELVVSGAGDA-E  118 (737)
Q Consensus        52 ~V~~l~~s~~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h---~~~V~~v~~-------sp~~~~~~l~sgs~dg-~  118 (737)
                      ....|+|+|.  ++++++-...+.|++.|+.++.....+ ...   ......++|       +++  +..|+.+...+ .
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~-~~~~~~~~~p~~ia~~~~~~~~d~~--G~~lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL-NINTIPTNRIRSIAFNKKIEGYADE--AEYMIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE-CCTTSSCSBEEEEEECCCBTTTBCT--TCEEEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE-ccCccccCCCcEEEEeecccccCCC--CCEEEEEeCCCCC
Confidence            3568999983  445555555578999999887765544 221   235899999       998  67555555443 2


Q ss_pred             ------EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcC-------CCCCCCC
Q 004685          119 ------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-------QGSSCPP  185 (737)
Q Consensus       119 ------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~-------~~~~~~~  185 (737)
                            |.+++... ++.....   .....+.. ......++++|+++.++++-..++.|..+|+.       ++..-..
T Consensus       217 ~~~~~~V~~i~r~~-~G~~~~~---~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp  291 (496)
T 3kya_A          217 GDESPSVYIIKRNA-DGTFDDR---SDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP  291 (496)
T ss_dssp             GGGEEEEEEEECCT-TSCCSTT---SCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred             cccCceEEEEecCC-CCceeec---ccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence                  55555221 1111000   00012221 12346788999777888888888899999997       4432000


Q ss_pred             CCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCc-EEEEEeCCCcEEEEECC
Q 004685          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRR  246 (737)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~t~s~Dg~i~iwd~~  246 (737)
                      ...........+..           . ........++|+|++ + ++++-.....|+.++..
T Consensus       292 ~~~~~~g~~~~l~~-----------~-~~~~~p~~ia~~p~G-~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          292 IVKNNPNTFKQLFT-----------I-ADPSWEFQIFIHPTG-KYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             BGGGCTTTEEEEEE-----------C-SSSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEE
T ss_pred             cccccccccceeEe-----------c-CCCCCceEEEEcCCC-CEEEEEeCCCCEEEEEecC
Confidence            00000000001111           1 112345789999985 5 45555667889987654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.58  E-value=2.5  Score=41.82  Aligned_cols=62  Identities=11%  Similarity=0.185  Sum_probs=34.6

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEEEcccCccc-eEEEEEeeCCCCCEEEEEECCC-----cEEEEecCC
Q 004685           61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDA-----EVRLFNLSR  126 (737)
Q Consensus        61 ~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~dg-----~I~iwd~~~  126 (737)
                      ++.+++.|+.+     ..+.+||..+.+-...- ...... -.+++.. +  +.+++.|+.++     .+.+||+.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~  133 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA-NMRDRRSTLGAAVL-N--GLLYAVGGFDGSTGLSSVEAYNIKS  133 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC-CCSSCCBSCEEEEE-T--TEEEEEEEECSSCEEEEEEEEETTT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCC-CCCccccceEEEEE-C--CEEEEEcCCCCCccCceEEEEeCCC
Confidence            66777777754     35888998877543221 111111 1122222 3  57778787653     467788764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.32  E-value=0.62  Score=48.24  Aligned_cols=123  Identities=14%  Similarity=0.123  Sum_probs=78.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------------EEEEEccc-----CccceEEEEEeeCCC-CCEEEEE
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK------------LLHSIETG-----HSANVFCTKFVPETS-DELVVSG  113 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~------------~~~~~~~~-----h~~~V~~v~~sp~~~-~~~l~sg  113 (737)
                      .|..+..+|+|++||..+. ..|.|-.+..+.            ....+.-+     ...+|..+.|+|-+. +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            5778999999999998865 588988887321            11223111     246799999999641 4689999


Q ss_pred             ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe--CCCcEEEEE
Q 004685          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHD  176 (737)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~Dg~I~vwd  176 (737)
                      ..|+.|++||+.........-+.......+......|.+++|.+ ++-.|+..+  ..|.|.-..
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEES
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEEC
Confidence            99999999999863221110000001112222336788999988 555555544  667666543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.24  E-value=4  Score=40.28  Aligned_cols=106  Identities=13%  Similarity=0.139  Sum_probs=52.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCe---EEEEEcccCccc-eEEEEEeeCCCCCEEEEEECC-----CcEEEEecCC
Q 004685           61 KGSLLISGSDD-----THINVWSYSSRK---LLHSIETGHSAN-VFCTKFVPETSDELVVSGAGD-----AEVRLFNLSR  126 (737)
Q Consensus        61 ~g~~lasgs~d-----g~V~vwd~~~~~---~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~d-----g~I~iwd~~~  126 (737)
                      ++.+++.|+.+     ..+.+||..+.+   -...- ...... -.+++.. +  +.+++.|+.+     ..+.+||+..
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~-~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA-PMNVRRGLAGATTL-G--DMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC-CCSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECC-CCCCCccceeEEEE-C--CEEEEEcccCCCcccceEEEEcCCC
Confidence            56777777754     468899988765   22211 111111 1122222 4  5677777654     3577888765


Q ss_pred             CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 004685          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  181 (737)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~  181 (737)
                      ..-        ..+..+...... .++...  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       138 ~~W--------~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          138 DQW--------SMLGDMQTAREG-AGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             TEE--------EEEEECSSCCBS-CEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             CeE--------EECCCCCCCccc-ceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc
Confidence            321        111111111111 122222  44677777654     357777776543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.07  E-value=5.1  Score=40.79  Aligned_cols=202  Identities=12%  Similarity=0.113  Sum_probs=107.7

Q ss_pred             ceEEEEEcCCCCEEEEEe------------CCCcEEEEECCC--CeE-EEEEccc-----CccceEEEEEeeCCCCC--E
Q 004685           52 CVNAISWNSKGSLLISGS------------DDTHINVWSYSS--RKL-LHSIETG-----HSANVFCTKFVPETSDE--L  109 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs------------~dg~V~vwd~~~--~~~-~~~~~~~-----h~~~V~~v~~sp~~~~~--~  109 (737)
                      ..-.|.+.|+|..+++++            .+|.|.++|..+  .+. ...+ .+     ..-....+.+.++.++.  +
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-IGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-ECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-cCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            455677888876555552            689999999873  222 1122 11     23467888887742233  3


Q ss_pred             EEEEEC--CCcEEEEecCCCCCCCCCCCCCCCceeeccC-CCceeEEEEecCCCcEEEEEeC---C--------------
Q 004685          110 VVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASE---D--------------  169 (737)
Q Consensus       110 l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~---D--------------  169 (737)
                      +++-..  +.+|.+|++.......      ..+..+.+. -...+.+.+.+ ++.++++...   |              
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~------~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~  202 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSL------LHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAW  202 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEE------EEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEE------EEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCc
Confidence            444333  5778888887532211      112233221 23578899988 5566655431   1              


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      |.|..+|.  ++                       ...+.   ......+.++|+|++..++++-+..+.|..|++....
T Consensus       203 g~vyr~d~--~~-----------------------~~~~~---~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g  254 (355)
T 3sre_A          203 SFVTYYSP--ND-----------------------VRVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  254 (355)
T ss_dssp             EEEEEECT--TC-----------------------CEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             cEEEEEEC--Ce-----------------------EEEee---cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC
Confidence            22222222  11                       11110   1123468999999854455555677899999986321


Q ss_pred             CcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeCC-CeEEEEEc
Q 004685          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSG-EHVYLMDV  308 (737)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~d-g~v~iwd~  308 (737)
                      .+..          .+.+   .+      ....-.+++++ +|.+.+++..+ +.|..|+.
T Consensus       255 ~l~~----------~~~~---~~------~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          255 TLTP----------LRVL---SF------DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             CEEE----------EEEE---EC------SSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             cEec----------CEEE---eC------CCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            1110          0111   00      11366789999 59877766544 34444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.18  E-value=3.9  Score=49.05  Aligned_cols=234  Identities=10%  Similarity=0.100  Sum_probs=126.4

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCC
Q 004685           58 WNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI  137 (737)
Q Consensus        58 ~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~  137 (737)
                      .+|..+.||.=. ..++.|+|+++...++.+.  ...+|..-.|-..   +.|+-.+ +..|.-|++....         
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~---~~l~lVT-~~aVyHW~~~~~s---------  136 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGES---------  136 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCC---CeeEEEc-CCeEEEeccCCCC---------
Confidence            456666666554 5789999999988887762  4567877788765   4554443 5689999996411         


Q ss_pred             CCceeeccC----CCceeEEEEecCCCcEEEEEe------CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          138 TPSALYQCH----TRRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       138 ~~~~~~~~h----~~~v~~l~~~p~~~~~l~s~s------~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                      .|...+..|    ...|..-..+++..-++++|-      ..|.+.+|.+......  ...+|..+-   ..+       
T Consensus       137 ~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ--~iegha~~F---~~~-------  204 (1630)
T 1xi4_A          137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASF---AQF-------  204 (1630)
T ss_pred             ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch--hhhHhHhhh---hee-------
Confidence            334444444    345666666774433443432      3477888887765422  111111110   000       


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  286 (737)
                        ..++...+..-++|.....       ..+.++|.++... .....+..     .....+.+..    .... -...+.
T Consensus       205 --~~~~~~~~~~l~~f~~~~~-------~g~kLhi~Ei~~~~~~~~~f~k-----k~~~~~~~~~----~~~D-fpv~~~  265 (1630)
T 1xi4_A          205 --KMEGNAEESTLFCFAVRGQ-------AGGKLHIIEVGTPPTGNQPFPK-----KAVDVFFPPE----AQND-FPVAMQ  265 (1630)
T ss_pred             --ccCCCCCCceEEEEEEecC-------CCceEEEEecCCCccCCCCCcc-----ccccccCCcc----cccC-cceEEE
Confidence              0001111111122222111       1268999988543 11111110     0111111111    0111 245688


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCccC
Q 004685          287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (737)
Q Consensus       287 ~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  338 (737)
                      .++.-..++.-+.-|.|++||+.++.......-.+.++-..+......++..
T Consensus       266 vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~  317 (1630)
T 1xi4_A          266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIG  317 (1630)
T ss_pred             eccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEE
Confidence            8998889999999999999999998866655555555555555444444443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.11  E-value=7  Score=38.70  Aligned_cols=106  Identities=10%  Similarity=0.051  Sum_probs=52.0

Q ss_pred             CCCEEEEEeC----C-----CcEEEEECCCCeEEEEEcccCccc-eEEEEEeeCCCCCEEEEEECC-----CcEEEEecC
Q 004685           61 KGSLLISGSD----D-----THINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGD-----AEVRLFNLS  125 (737)
Q Consensus        61 ~g~~lasgs~----d-----g~V~vwd~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~d-----g~I~iwd~~  125 (737)
                      ++.+++.|+.    +     ..+.+||..+.+-...- ...... -.+++.. +  +.+++.|+.+     ..+.+||+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA-PMSVPRNRIGVGVI-D--GHIYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC-CCSSCCBTCEEEEE-T--TEEEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC-CCCcCccccEEEEE-C--CEEEEEcCCCCCcccccEEEECCC
Confidence            5677777765    2     46888998877533221 111111 1122222 3  4677777643     357888887


Q ss_pred             CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 004685          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  181 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~  181 (737)
                      +..-.        .+..+......-..+.+   ++.+++.|+.+     ..+.+||+.+.+
T Consensus       146 ~~~W~--------~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~  195 (308)
T 1zgk_A          146 RDEWH--------LVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE  195 (308)
T ss_dssp             TTEEE--------ECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             CCeEe--------ECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence            53211        11111111111122222   44677777654     357777776543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=92.70  E-value=9  Score=38.39  Aligned_cols=160  Identities=12%  Similarity=0.105  Sum_probs=85.8

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                      ++...+.++.+.+++.+++.+...+.++-+|- .++.-..+.......+..+.+.++  +.++ .++.+|.+++.+... 
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~--g~~~-~~~~~G~~~~s~~D~-  234 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPD--GRLW-MIVNGGKIAFSDPDN-  234 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTT--SCEE-EEETTTEEEEEETTE-
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCC--CCEE-EEeCCceEEEecCCC-
Confidence            34567899999999888877654433344442 122222222345567889999887  5554 555678877764221 


Q ss_pred             CCCCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685          128 SGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (737)
                       +..     +..+..- ......+.++.+.+ ++.+++++ .++.| ++....++.=                      .
T Consensus       235 -G~t-----W~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~i-~~S~DgG~tW----------------------~  283 (327)
T 2xbg_A          235 -SEN-----WGELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGAL-LCSQDGGQTW----------------------Q  283 (327)
T ss_dssp             -EEE-----ECCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STTCE-EEESSTTSSC----------------------E
T ss_pred             -CCe-----eEeccCCcccCCcceEEEEecC-CCEEEEEe-CCCeE-EEeCCCCccc----------------------E
Confidence             100     0001100 01223578888887 44566554 46766 3444433310                      0


Q ss_pred             eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004685          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (737)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~  245 (737)
                      .+.........+.++.|.++  ..+++++.+|.|.-++-
T Consensus       284 ~~~~~~~~~~~~~~v~~~~~--~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          284 QDVDVKKVPSNFYKILFFSP--DQGFILGQKGILLRYVT  320 (327)
T ss_dssp             ECGGGTTSSSCCCEEEEEET--TEEEEECSTTEEEEECC
T ss_pred             EcCccCCCCCCeEEEEEECC--CceEEEcCCceEEEEcC
Confidence            01111111235677888753  35667777898777654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.66  E-value=9.8  Score=38.70  Aligned_cols=73  Identities=18%  Similarity=0.104  Sum_probs=45.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEEc--ccCccceEEEEEeeC---CCCCEEEEEEC---C----C
Q 004685           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIE--TGHSANVFCTKFVPE---TSDELVVSGAG---D----A  117 (737)
Q Consensus        51 ~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~-~~~~~~--~~h~~~V~~v~~sp~---~~~~~l~sgs~---d----g  117 (737)
                      .....|+|.|+|+++++ ..+|.|+++|. .++ .+..+.  .........|+|+|+   . +.++++-..   +    .
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKK-SWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEEECGGGCEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcC-CEEEEEEeccCCCCCcce
Confidence            45678999999985555 55699999974 444 222220  112356889999996   3 455555442   3    5


Q ss_pred             cEEEEecCC
Q 004685          118 EVRLFNLSR  126 (737)
Q Consensus       118 ~I~iwd~~~  126 (737)
                      .|..|+...
T Consensus       106 ~v~r~~~~~  114 (354)
T 3a9g_A          106 RVIRGRLDG  114 (354)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEECC
Confidence            677777653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.36  E-value=9.5  Score=37.82  Aligned_cols=65  Identities=11%  Similarity=0.138  Sum_probs=34.6

Q ss_pred             EcCCCCEEEEEeC-----C------CcEEEEECCCCeEEEEEcccCccc-eEEEEEeeCCCCCEEEEEECC--------C
Q 004685           58 WNSKGSLLISGSD-----D------THINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGD--------A  117 (737)
Q Consensus        58 ~s~~g~~lasgs~-----d------g~V~vwd~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~d--------g  117 (737)
                      ...++.+++.|+.     .      ..+.+||..+.+-.. +....... -.+++.. +  +.+++.|+.+        .
T Consensus        42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~  117 (315)
T 4asc_A           42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA-L--NSIYVVGGREIKDGERCLD  117 (315)
T ss_dssp             ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEESCEEEEE-T--TEEEEECCEESSTTCCBCC
T ss_pred             EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhceeEEEE-C--CEEEEEeCCcCCCCCcccc
Confidence            3457788888873     1      127788988775432 21111111 1122222 3  4677777632        4


Q ss_pred             cEEEEecCC
Q 004685          118 EVRLFNLSR  126 (737)
Q Consensus       118 ~I~iwd~~~  126 (737)
                      .+.+||+.+
T Consensus       118 ~~~~~d~~~  126 (315)
T 4asc_A          118 SVMCYDRLS  126 (315)
T ss_dssp             CEEEEETTT
T ss_pred             eEEEECCCC
Confidence            588888875

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.30  E-value=5.3  Score=40.65  Aligned_cols=29  Identities=14%  Similarity=0.318  Sum_probs=25.1

Q ss_pred             eeEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Q 004685          282 LTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (737)
Q Consensus       282 i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~  310 (737)
                      -+.++|+||+++|+.+.. .+.|..|++..
T Consensus       223 pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          223 ANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            678999999998888875 78999999975

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.02  E-value=8  Score=40.05  Aligned_cols=164  Identities=14%  Similarity=0.120  Sum_probs=96.1

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccC---ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCC-C
Q 004685           59 NSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH---SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD-D  134 (737)
Q Consensus        59 s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h---~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~  134 (737)
                      +.+|..|+.+-. +.||.-++.....-+.+...+   -..|..+..+|+  |++||..+ +..|.|-.+..+.....+ .
T Consensus        29 ~~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSps--G~lLAl~g-~~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           29 SQNGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTS--GDLLCLFN-DNEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             ETTTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTT--SSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred             EcCCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCC--CCEEEEec-CCeEEEEEecCccccCcccc
Confidence            456666666643 688888877443333332221   236788999999  78888875 568888888742211110 0


Q ss_pred             --CCCCCceeecc------CCCceeEEEEecCCC--cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCc
Q 004685          135 --NAITPSALYQC------HTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (737)
Q Consensus       135 --~~~~~~~~~~~------h~~~v~~l~~~p~~~--~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (737)
                        ...+ .+.+.-      ...+|..+.|+|-+.  ..|++-..|+.|++||+......+.           ......+ 
T Consensus       105 ~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-----------~L~k~~~-  171 (452)
T 3pbp_A          105 IQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-----------VLNKPNN-  171 (452)
T ss_dssp             HHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-----------EESCCCS-
T ss_pred             cccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-----------chhcccc-
Confidence              0011 111111      257799999999543  3888999999999999997432211           1110000 


Q ss_pred             eeeccCCCCCccceEEEEEecCCCcEEEEEe--CCCcEEEE
Q 004685          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLY  243 (737)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s--~Dg~i~iw  243 (737)
                         ..........+.+++|.++ +-.|.+.+  .+|.|+-.
T Consensus       172 ---~fg~d~~~~ev~S~~Fg~~-~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          172 ---SFGLDARVNDITDLEFSKD-GLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ---EEESCSSCCCEEEEEECTT-SSCEEEEECTTSCEEEEE
T ss_pred             ---ccCCCcccceEEEEEEcCC-CcEEEEEecCCCCCEEEE
Confidence               0011223367889999985 56666644  66776554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=91.11  E-value=6  Score=38.97  Aligned_cols=107  Identities=16%  Similarity=0.115  Sum_probs=52.9

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC-------CcEEEEecCCCC
Q 004685           61 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEVRLFNLSRFS  128 (737)
Q Consensus        61 ~g~~lasgs~dg-----~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-------g~I~iwd~~~~~  128 (737)
                      ++.+++.|+.++     .+.+||..+.+-...-.......-.+++.. +  +.+++.|+.+       ..+.+||+....
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-G--GLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-C--CEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence            567777777553     477889887654332100111111222222 3  4677776643       347888887532


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  181 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~  181 (737)
                      -        ..+..+.........+.+   ++.+++.|+.+     ..+.+||+.+.+
T Consensus       185 W--------~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          185 W--------TYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             E--------EEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             E--------EECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            1        111111111111122222   44777777764     357788876653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=90.96  E-value=7.7  Score=38.10  Aligned_cols=107  Identities=12%  Similarity=0.056  Sum_probs=54.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC-----CcEEEEecCCCCCC
Q 004685           61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSGR  130 (737)
Q Consensus        61 ~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~iwd~~~~~~~  130 (737)
                      ++++++.|+.+     ..+.+||..+.+-...-.......-.+++.. +  +.+++.|+.+     ..+.+||+.+..- 
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~~W-  187 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-S--GVIYCLGGYDGLNILNSVEKYDPHTGHW-  187 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTEE-
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-C--CEEEEECCCCCCcccceEEEEeCCCCcE-
Confidence            56777777643     3588899887654322101111111122222 4  5677777754     4588888875321 


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  181 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~  181 (737)
                             ..+..+.........+.+   ++.+++.|+.+     ..+.+||+.+.+
T Consensus       188 -------~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          188 -------TNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             -------EEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             -------EeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence                   111111111111122222   44677777764     457888877653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=90.68  E-value=7.3  Score=38.40  Aligned_cols=106  Identities=8%  Similarity=0.072  Sum_probs=53.3

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeEEEEEcccCcc-ceEEEEEeeCCCCCEEEEEEC---------CCcEEEEec
Q 004685           61 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDELVVSGAG---------DAEVRLFNL  124 (737)
Q Consensus        61 ~g~~lasgs~d------g~V~vwd~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~l~sgs~---------dg~I~iwd~  124 (737)
                      ++++++.|+.+      ..+.+||..+.+-...- ..... .-.+++. -+  +.+++.|+.         -..+.+||+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~~~~yd~  176 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP-SMLTQRCSHGMVE-AN--GLIYVCGGSLGNNVSGRVLNSCEVYDP  176 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC-CCSSCCBSCEEEE-ET--TEEEEECCEESCTTTCEECCCEEEEET
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC-CCcCCcceeEEEE-EC--CEEEEECCCCCCCCcccccceEEEeCC
Confidence            66777777755      45889999887643321 11111 1112222 23  467777654         344788888


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  181 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~  181 (737)
                      .+..-        ..+..+...... .++...  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       177 ~~~~W--------~~~~~~p~~r~~-~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          177 ATETW--------TELCPMIEARKN-HGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             TTTEE--------EEECCCSSCCBS-CEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             CCCeE--------EECCCccchhhc-ceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            75321        111111111111 122222  44677777654     357778877653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=90.54  E-value=7.9  Score=39.06  Aligned_cols=151  Identities=11%  Similarity=0.173  Sum_probs=87.2

Q ss_pred             CCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC---CCc---EEEEEeC---CCcEEEEEc
Q 004685          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPH---VVWSASE---DGTLRQHDF  177 (737)
Q Consensus       107 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~---~l~s~s~---Dg~I~vwdl  177 (737)
                      ..+++...+++-+.+||+.-           +.++.+..  +.++.+..-|.   ++.   ++++...   +.+|.+|++
T Consensus        40 ~s~ii~t~k~~gL~Vydl~G-----------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i  106 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSLDG-----------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (355)
T ss_dssp             GCEEEEEETTTEEEEEETTS-----------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred             ccEEEEEcCCCCEEEEcCCC-----------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence            35677777788999999952           12444432  56777777661   111   3333333   578999987


Q ss_pred             CCCCCCCCCCCCCCccceEEEeccCCceeeccCC--C--CCccceEEEEE--ecCCCc-EEEEEeCCCcEEEEECCC---
Q 004685          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP--P--KQTLSLKSCDI--SSTRPH-LLLVGGSDAFARLYDRRM---  247 (737)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~v~~i~~--sp~~~~-~l~t~s~Dg~i~iwd~~~---  247 (737)
                      ......             +.        .+...  +  .....+..+|+  +|..+. ++++...+|.+..|++..   
T Consensus       107 Dp~~~~-------------l~--------~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~  165 (355)
T 3amr_A          107 DGKNGT-------------LQ--------SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKN  165 (355)
T ss_dssp             CTTTCC-------------EE--------ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTT
T ss_pred             CCCCCc-------------ee--------eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCC
Confidence            432210             00        11000  0  11145566777  665443 688888889999999843   


Q ss_pred             CCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 004685          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~  309 (737)
                      +....         +.++.|.   +      +..+..|+..+....|+++-.+..|..++..
T Consensus       166 g~~~~---------~lVR~f~---l------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          166 GYISG---------KKVRAFK---M------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             SCEEE---------EEEEEEE---C------SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             Ccccc---------eEEEEec---C------CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence            21110         1111111   1      1147789999999999999999666555544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=89.09  E-value=29  Score=41.47  Aligned_cols=178  Identities=11%  Similarity=0.108  Sum_probs=99.1

Q ss_pred             ccccccccccccccccce--eecccCCceEEEEE---cCC-CCEEEEEe----------CCCcEEEEECCCCeEEEEEcc
Q 004685           27 NHSLQMHSSLVRRLSQER--ELEGHQGCVNAISW---NSK-GSLLISGS----------DDTHINVWSYSSRKLLHSIET   90 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~--~l~~H~~~V~~l~~---s~~-g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~   90 (737)
                      ...+++.+..  +++.+.  .|.. .+.+.|++.   ..+ ..+|+.|.          ..|.|.+|++..++.......
T Consensus       806 ~s~i~lidp~--t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~  882 (1158)
T 3ei3_A          806 VHNLLIIDQH--TFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK  882 (1158)
T ss_dssp             EEEEEEEETT--TCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEEeCC--CCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE
Confidence            3455555532  233332  3333 345556553   322 46888875          358899999875554333323


Q ss_pred             cCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC
Q 004685           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (737)
Q Consensus        91 ~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg  170 (737)
                      ..+++|++++--.   | +|++|- ..+|++|++.....          +..-..+-..|..+.... .+++++.|..-.
T Consensus       883 ~v~g~v~al~~~~---g-~Lla~i-g~~l~vy~l~~~~~----------L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~  946 (1158)
T 3ei3_A          883 EVKGAVYSMVEFN---G-KLLASI-NSTVRLYEWTTEKE----------LRTECNHYNNIMALYLKT-KGDFILVGDLMR  946 (1158)
T ss_dssp             EESSCEEEEEEET---T-EEEEEE-TTEEEEEEECTTSC----------EEEEEEECCCSCEEEEEE-ETTEEEEEESSB
T ss_pred             EcCCcCEEEeeeC---C-EEEEEc-CCEEEEEECCCCce----------EEEEeeccccEEEEEEec-cCCEEEEEEhhh
Confidence            4567888877443   4 454443 57899999975221          221011111133222222 346777888777


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004685          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (737)
Q Consensus       171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~  247 (737)
                      .|.++..+....             .+        ..+. ......+++++.|-.+  ..++.+..+|.|.++....
T Consensus       947 Sv~~~~y~~~~~-------------~L--------~~~a-~D~~~~~vta~~~ld~--~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          947 SVLLLAYKPMEG-------------NF--------EEIA-RDFNPNWMSAVEILDD--DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             CEEEEEEETTTT-------------EE--------EEEE-ECCSCBCEEEEEEEET--TEEEEEETTSEEEEEEECT
T ss_pred             eEEEEEEEcCCC-------------eE--------EEEE-eecccccEEEEEEEcc--CcEEEEcCCCcEEEEecCC
Confidence            887766543220             00        0111 1123467888888764  4788899999999998764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=88.85  E-value=15  Score=34.29  Aligned_cols=97  Identities=14%  Similarity=0.052  Sum_probs=52.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCe------EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC
Q 004685           62 GSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  135 (737)
Q Consensus        62 g~~lasgs~dg~V~vwd~~~~~------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  135 (737)
                      ..+|+....| +|+.=....+.      ....+-..-=..+.+++|+|+  +.+.+.  .+|.+.-.+..+...      
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~--G~LYaV--~~G~Ly~~~~~t~~~------   72 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPG--GELYGV--LNDKIYKGTPPTHDN------   72 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTT--SCEEEE--ETTEEEEESCCCSTT------
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCC--ccEEEE--eCCeEEEECCCCCCc------
Confidence            4456666666 65554444332      112221111246789999997  676666  667655444432111      


Q ss_pred             CCCCceeeccCCCc--------eeEEEEecCCCcEEEEEeCCCcEEEEEc
Q 004685          136 AITPSALYQCHTRR--------VKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (737)
Q Consensus       136 ~~~~~~~~~~h~~~--------v~~l~~~p~~~~~l~s~s~Dg~I~vwdl  177 (737)
                           ....+-...        -.++.|.| ++.+.++  .||.|.-++-
T Consensus        73 -----~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           73 -----DNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             -----CCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESC
T ss_pred             -----ccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCC
Confidence                 111111222        36789998 5566655  5698887764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=88.20  E-value=24  Score=35.73  Aligned_cols=72  Identities=11%  Similarity=0.155  Sum_probs=43.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc------ccCccceEEEEEeeC---CCCCEEEEEEC-------
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE------TGHSANVFCTKFVPE---TSDELVVSGAG-------  115 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~------~~h~~~V~~v~~sp~---~~~~~l~sgs~-------  115 (737)
                      ....|+|.|+|+.|+.+...|.|++++.. +.....+.      .........|+|+|+   . +.++++-..       
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQS-RRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHH-CEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCC-CEEEEEEeCCCCCCCc
Confidence            46789999999934445567999999854 33211110      122346789999994   2 555555433       


Q ss_pred             CCcEEEEecC
Q 004685          116 DAEVRLFNLS  125 (737)
Q Consensus       116 dg~I~iwd~~  125 (737)
                      ...|..|++.
T Consensus        97 ~~~v~r~~~~  106 (353)
T 2g8s_A           97 GTAVGYGRLS  106 (353)
T ss_dssp             EEEEEEEEEC
T ss_pred             eeEEEEEEEC
Confidence            2346556654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=87.74  E-value=12  Score=36.81  Aligned_cols=106  Identities=8%  Similarity=0.065  Sum_probs=53.7

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEEEc-ccCccceEEEEEeeCCCCCEEEEEECC-----CcEEEEecCCCCC
Q 004685           61 KGSLLISGSDD-----THINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSG  129 (737)
Q Consensus        61 ~g~~lasgs~d-----g~V~vwd~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~iwd~~~~~~  129 (737)
                      ++++++.|+.+     ..+.+||..+.+-...-. ...... .+++.. +  +.+++.|+.+     ..+.+||+....-
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W  196 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVAVL-N--RLLYAVGGFDGTNRLNSAECYYPERNEW  196 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEEEE-C--CEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence            56777777643     358889988765432210 111111 122222 3  5677777754     4588888875321


Q ss_pred             CCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 004685          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS  181 (737)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----g~I~vwdl~~~~  181 (737)
                      .        .+..+.........+.+   ++.+++.|+.+     ..+.+||+.+.+
T Consensus       197 ~--------~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          197 R--------MITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             E--------ECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             e--------eCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            1        11111111111122222   44677777664     457888877653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=87.67  E-value=11  Score=37.42  Aligned_cols=106  Identities=11%  Similarity=0.050  Sum_probs=53.4

Q ss_pred             CCCEEEEEeCC--------CcEEEEECCCCeEEEEEcccCccce-EEEEEeeCCCCCEEEEEEC-C-----CcEEEEecC
Q 004685           61 KGSLLISGSDD--------THINVWSYSSRKLLHSIETGHSANV-FCTKFVPETSDELVVSGAG-D-----AEVRLFNLS  125 (737)
Q Consensus        61 ~g~~lasgs~d--------g~V~vwd~~~~~~~~~~~~~h~~~V-~~v~~sp~~~~~~l~sgs~-d-----g~I~iwd~~  125 (737)
                      ++.+++.|+.+        ..+.+||..+.+-...- ....... .+++. -+  +.+++.|+. +     ..+.+||+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~yd~~  173 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLPYVVYGHTVLS-HM--DLVYVIGGKGSDRKCLNKMCVYDPK  173 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCSSCCBSCEEEE-ET--TEEEEECCBCTTSCBCCCEEEEETT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCCCcccceeEEE-EC--CEEEEEeCCCCCCcccceEEEEeCC
Confidence            56677777632        45889999877533211 1111111 22222 33  467777775 2     458888887


Q ss_pred             CCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC-----cEEEEEcCCCC
Q 004685          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGS  181 (737)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg-----~I~vwdl~~~~  181 (737)
                      +..-        ..+..+......-.++.+   ++.+++.|+.++     .+.+||+.+.+
T Consensus       174 ~~~W--------~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          174 KFEW--------KELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTEE--------EECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCeE--------EECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            5321        111111111111122222   447777777654     47777876653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=86.97  E-value=25  Score=34.68  Aligned_cols=66  Identities=12%  Similarity=0.100  Sum_probs=34.4

Q ss_pred             EcCCCCEEEEEeC----CC-------cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC-------CcE
Q 004685           58 WNSKGSLLISGSD----DT-------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEV  119 (737)
Q Consensus        58 ~s~~g~~lasgs~----dg-------~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-------g~I  119 (737)
                      ...++.+++.|+.    ++       .+.+||..+.+-...-.......-.+++.. +  +.+++.|+.+       ..+
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-D--DKIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-T--TEEEEEEEEBTTTCCEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-C--CEEEEEcCccCCCCcccceE
Confidence            3457788888873    12       177888877654322100011111222222 3  4677777754       247


Q ss_pred             EEEecCC
Q 004685          120 RLFNLSR  126 (737)
Q Consensus       120 ~iwd~~~  126 (737)
                      .+||+.+
T Consensus       130 ~~yd~~~  136 (318)
T 2woz_A          130 LCYDPVA  136 (318)
T ss_dssp             EEEETTT
T ss_pred             EEEeCCC
Confidence            7788765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=84.51  E-value=26  Score=34.53  Aligned_cols=62  Identities=8%  Similarity=0.039  Sum_probs=33.7

Q ss_pred             CCCEEEEEeCC-------CcEEEEECCCCeEEEEEcccCccc-eEEEEEeeCCCCCEEEEEEC------CCcEEEEecCC
Q 004685           61 KGSLLISGSDD-------THINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAG------DAEVRLFNLSR  126 (737)
Q Consensus        61 ~g~~lasgs~d-------g~V~vwd~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~~l~sgs~------dg~I~iwd~~~  126 (737)
                      ++.+++.|+.+       ..+.+||..+.+-...- ...... -.+++. .+  +.+++.|+.      -..+.+||+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~yd~~~  184 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKVYGHNVIS-HN--GMIYCLGGKTDDKKCTNRVFIYNPKK  184 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCEESCEEEE-ET--TEEEEECCEESSSCBCCCEEEEETTT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcccccEEEE-EC--CEEEEEcCCCCCCCccceEEEEcCCC
Confidence            56777777754       34778898876543321 111111 112222 33  467777764      23588888875

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=81.37  E-value=41  Score=33.67  Aligned_cols=53  Identities=13%  Similarity=0.225  Sum_probs=28.6

Q ss_pred             CCCEEEEEeC-C---------CcEEEEECCCCeEEEEEcccC-ccceEEEEEeeCCCCCEEEEEECC
Q 004685           61 KGSLLISGSD-D---------THINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGD  116 (737)
Q Consensus        61 ~g~~lasgs~-d---------g~V~vwd~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~d  116 (737)
                      ++++++.|+. +         ..+.+||..+.+-...- ... .......+...+  +.+++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~p~~r~~~~~~~~~--~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLM-SHAPMGMAGHVTFVHN--GKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECS-CCCSSCCSSEEEEEET--TEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECC-CCCCcccccceEEEEC--CEEEEEeCcC
Confidence            5677777765 2         46889999887543321 111 111112122244  5778888765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=80.78  E-value=50  Score=33.24  Aligned_cols=77  Identities=12%  Similarity=0.091  Sum_probs=46.4

Q ss_pred             ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCce----eeccCCCceeEEEEecC---CCcEEEE
Q 004685           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA----LYQCHTRRVKKLAVEVG---NPHVVWS  165 (737)
Q Consensus        93 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~~p~---~~~~l~s  165 (737)
                      -.....|+|.|+  +.+|++--..|.|++++......        ..+.    ...........|+++|+   ++.+.++
T Consensus        31 L~~P~~ia~~pd--G~llVter~~G~I~~v~~~~g~~--------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           31 LNSPWGLAPLPG--GDLLVSSRDEATITRVDAKTGRK--------TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY  100 (347)
T ss_dssp             CSSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCE--------EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred             CCCceEEEEcCC--CcEEEEEecCCEEEEEECCCCcE--------eeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence            456789999999  67777665589999887543211        0111    11223456789999984   3444433


Q ss_pred             E--eCCCcEEEEEcCC
Q 004685          166 A--SEDGTLRQHDFRQ  179 (737)
Q Consensus       166 ~--s~Dg~I~vwdl~~  179 (737)
                      -  ..+..|.-|.+..
T Consensus       101 yt~~~~~~v~R~~~~~  116 (347)
T 3das_A          101 FTSASDNRIVRMLYDE  116 (347)
T ss_dssp             EECSSSEEEEEEEBCT
T ss_pred             EecCCCCEEEEEEeCC
Confidence            2  2345666666654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=80.39  E-value=51  Score=33.14  Aligned_cols=63  Identities=8%  Similarity=0.070  Sum_probs=37.0

Q ss_pred             CCceEEEEEcCC---CCEEE-EEeCC-----CcEEEEECCCCe-----EE-EEEc--ccCccceEEEEEeeCCCCCEEEE
Q 004685           50 QGCVNAISWNSK---GSLLI-SGSDD-----THINVWSYSSRK-----LL-HSIE--TGHSANVFCTKFVPETSDELVVS  112 (737)
Q Consensus        50 ~~~V~~l~~s~~---g~~la-sgs~d-----g~V~vwd~~~~~-----~~-~~~~--~~h~~~V~~v~~sp~~~~~~l~s  112 (737)
                      ......|+|+|+   +..|. +-...     +.|..|+...+.     .+ ..+.  .........++|.|+  |.++++
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~  151 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVT  151 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEE
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEE
Confidence            356789999998   44444 43322     578888876431     11 1231  111123468999999  677666


Q ss_pred             EE
Q 004685          113 GA  114 (737)
Q Consensus       113 gs  114 (737)
                      -+
T Consensus       152 ~G  153 (352)
T 2ism_A          152 TG  153 (352)
T ss_dssp             CC
T ss_pred             EC
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	737
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.004
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.7 bits (161), Expect = 2e-12
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 599 SSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT 658
           +  +D      +   D +     H N+   I   SF  + G  + +G DD    +W+   
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALK 301

Query: 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
                +L G +  V+C+        VAT   D+ +KIW
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.7 bits (148), Expect = 9e-11
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 14/138 (10%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINV-WSYSSRKLLHSIETGHSAN 95
           VR     +   GH+  +NAI +   G+   +GSDD    +    + ++L+          
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +    F    S  L+++G  D    +++  +             + +   H  RV  L V
Sbjct: 273 ITSVSFSK--SGRLLLAGYDDFNCNVWDALKA----------DRAGVLAGHDNRVSCLGV 320

Query: 156 EVGNPHVVWSASEDGTLR 173
                 V  + S D  L+
Sbjct: 321 TDDGMAVA-TGSWDSFLK 337

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
               + ++S++  G LL++G DD + NVW          +  GH   V C     +    
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDD--GM 325

Query: 109 LVVSGAGDAEVRLFN 123
            V +G+ D+ ++++N
Sbjct: 326 AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 40/273 (14%), Positives = 76/273 (27%), Gaps = 20/273 (7%)

Query: 39  RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 98
           ++   R L GH   + A+ W +   LL+S S D  + +W   +   +H+I    S+ V  
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMT 102

Query: 99  TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG 158
             +          + +G+        +  S   L           +              
Sbjct: 103 CAY----------APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152

Query: 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 218
           + + + ++S D T    D   G           +  ++           L        S 
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL----SLAPDTRLFVSGACDASA 208

Query: 219 KSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275
           K  D+          G      A     +       T           +     +    H
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTYSH 266

Query: 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308
                 +T V+FS +G  +L  Y   +  + D 
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 12/133 (9%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
           H G V ++S      L +SG+ D    +W         +  TGH +++    F P  +  
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFP--NGN 239

Query: 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168
              +G+ DA  RLF+L               +  +      +  ++       ++ +  +
Sbjct: 240 AFATGSDDATCRLFDLRADQ--------ELMTYSHDNIICGITSVSFSKSGRLLL-AGYD 290

Query: 169 DGTLRQHDFRQGS 181
           D      D  +  
Sbjct: 291 DFNCNVWDALKAD 303

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
             +  +   L GH   V+ +     G  + +GS D+ + +W+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 637 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
                  SG+ D    +W+ + G   +   G E+ +N +   P     AT   D T +++
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 604 RIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIK 663
            I       +  ++   GH      +      G     + S S DG+  IW+  T   + 
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMH----WGTDSRLLVSASQDGKLIIWDSYTTNKVH 91

Query: 664 MLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
            +    + V      P    VA  G+DN   I+
Sbjct: 92  AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (161), Expect = 3e-12
 Identities = 30/244 (12%), Positives = 71/244 (29%), Gaps = 25/244 (10%)

Query: 46  LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-----TGHSANVFCTK 100
            + H   + ++S  +     +S S D ++ VW        +  +       H + +    
Sbjct: 10  GKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 101 FVPETS-----DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
            +           LV + +   ++  + ++R                          L  
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 156 EVGNPHVVW----SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211
              N  ++     +    GT     F   +    + + +      L       + ++  P
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL-------QGTVESP 180

Query: 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271
              +    S DIS     L+  G ++   ++ +   L PL + + + S     N    + 
Sbjct: 181 MTPSQFATSVDISER--GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238

Query: 272 LSEH 275
            S  
Sbjct: 239 FSPQ 242

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 2/125 (1%)

Query: 12  YDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD 71
                   T    +    +   S              H   V ++S+N  G  L S   D
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310

Query: 72  THINVWSYSSRKLLHSIETGHSANVFCTKF-VPETSDELVVSGAGDAEVRLFNLSRFSGR 130
             +  W   +++ + ++   H  ++   +  +        ++  G  +V+       SG 
Sbjct: 311 GKLRFWDVKTKERITTL-NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 369

Query: 131 GLDDN 135
           G D N
Sbjct: 370 GADLN 374

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 13/71 (18%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLI------------KMLLGDEAVVNCVQCHPFD-CVVA 685
             +  S S DG   +W+ +                 K  L    V+  ++   F+ C+VA
Sbjct: 24  NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83

Query: 686 TSGIDNTIKIW 696
           T+     +  +
Sbjct: 84  TTSFSGDLLFY 94

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 6e-12
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
             L GH   V  + ++S G  ++S +DD  + VW Y +++ + ++   H   V    F  
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHK 299

Query: 104 ETSDELVVSGAGDAEVRLF 122
             +   VV+G+ D  V+++
Sbjct: 300 --TAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 585 ETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIAS 644
           ET  +        S S++  I     +        VGH N    +         G +I S
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV----LFHSGGKFILS 264

Query: 645 GSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
            +DD    +W+ +  R +K L   E  V  +  H     V T  +D T+K+W
Sbjct: 265 CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 7e-10
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 39  RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 98
           R  ++  L GH+  V  + ++   S+++S S+D  I VW Y +     +++ GH+ +V  
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQD 64

Query: 99  TKFVP 103
             F  
Sbjct: 65  ISFDH 69

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 12/191 (6%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSL--VRRLSQERELEGHQGCVNAISW 58
                 H         +   +    V+ S      +  V+     +   GH+  V  +  
Sbjct: 92  ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 151

Query: 59  NSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118
           N  G+L+ S S+D  + VW  ++++    +   H   V C  + PE+S   +    G   
Sbjct: 152 NQDGTLIASCSNDQTVRVWVVATKECKAEL-REHRHVVECISWAPESSYSSISEATGSET 210

Query: 119 VRLFNLSRFSGRGLDDNAI--------TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170
            +      F   G  D  I                H   V+ +    G   ++ S ++D 
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDK 269

Query: 171 TLRQHDFRQGS 181
           TLR  D++   
Sbjct: 270 TLRVWDYKNKR 280

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 18/88 (20%), Positives = 32/88 (36%)

Query: 609 PETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD 668
               I                 +    G+ G ++ SGS D    +W+  TG  +  L+G 
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 669 EAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           +  V  V  H     + +   D T+++W
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVW 274

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 6e-05
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW 77
            +     + L  H+  V ++ ++     +++GS D  + VW
Sbjct: 276 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC 682
              + S S+D    +W+ +TG   + L G    V  +       
Sbjct: 29  FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.9 bits (148), Expect = 6e-11
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
           ++   GH   + A+S ++ G  L S   + HIN W  S+          H+  +   K 
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 641 YIASGSDDGRWFIWEKQTGRLIKMLL---GDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
            +A+GS D    +W         +++      + VN V     +  + ++G D+ IK W
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLL-GDEAVVN 673
           + Q   GH    T +         G  + S   +G    W+  TG   ++       ++ 
Sbjct: 4   IDQVRYGHNKAITALS----SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59

Query: 674 CVQCHPFDCVVATSGIDNTIKIWTPSASV 702
            ++      +   S  D+   +    + V
Sbjct: 60  GIKTTSKGDLFTVSWDDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSD 107
           H   V  +SW+     L +GS D  + VW+ +       I +  H+ +   +      ++
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL--NE 280

Query: 108 ELVVSGAGDAEVRLFNLS 125
             +VS   D+ ++ +N+ 
Sbjct: 281 TTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 4/38 (10%), Positives = 13/38 (34%)

Query: 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G + ++  G    +  +        + ++  +  I  W
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 39

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 7e-10
 Identities = 40/231 (17%), Positives = 75/231 (32%), Gaps = 21/231 (9%)

Query: 42  QERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
           Q   L GH   V   + +    + +I+G+DD  I V+   ++K L  +  GH   V+  K
Sbjct: 4   QRTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALK 60

Query: 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160
           +       ++VSG+ D  VR++++ +     + +   +          +         N 
Sbjct: 61  YAH---GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK---------NI 108

Query: 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220
             + + S D TL      + SS P  G  H                 +           S
Sbjct: 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA-----S 163

Query: 221 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271
               S   ++++ G  D    ++D   +  L              Y     
Sbjct: 164 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 214

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 2e-08
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
           H   ++AI+       ++    +   N+++  S KL+H+     +  ++   F       
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG---KT 336

Query: 109 LVVSGAGDAEVRLFNLSRFS 128
           LV +   D +  L  L  FS
Sbjct: 337 LVAAVEKDGQSFLEILD-FS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIK-MLLGDEAVVN 673
                       T++   +      + + SGS+  ++ I+  ++G+L+   +L D   + 
Sbjct: 270 ANDYSRKFSYHHTNLSAITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIW 328

Query: 674 CVQCHPFDCVVATSGIDNTIKIW 696
            V       +VA    D    + 
Sbjct: 329 SVNFKG-KTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 7e-06
 Identities = 9/61 (14%), Positives = 23/61 (37%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 698
            +Y+ +G+DD    +++    + +  L G +  V  ++      +V+ S           
Sbjct: 23  DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 82

Query: 699 S 699
            
Sbjct: 83  K 83

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 6/302 (1%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
                   +L GH G V A+ + + G +L+SGS D  + VW        H  E  +S   
Sbjct: 40  SINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 98

Query: 97  FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
                  +     +V+G+ D  + ++ L + S             ++         + V 
Sbjct: 99  CLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157

Query: 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216
            G+   V + S  G +        ++      +  +C  IL         ++ D  ++  
Sbjct: 158 RGHMASVRTVSGHGNIVVSGSYD-NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216

Query: 217 SLKSCD--ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274
              S D  I         +  +          +           +      +    +  +
Sbjct: 217 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 276

Query: 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334
                 +L+ +T     + +L+S S     + ++  +G       + DA +I S      
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR-SGKLVHANILKDADQIWSVNFKGK 335

Query: 335 GL 336
            L
Sbjct: 336 TL 337

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 7e-10
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-- 106
           H+  V +++       ++SGS D  +  W   S   L  ++ GH  +V        +S  
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLG 365

Query: 107 --DELVVSGAGDAEVRLFNLSR 126
               +  +G+GD + R++   +
Sbjct: 366 PEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 1e-09
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 28/155 (18%)

Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS------- 93
           S+     GH+  V ++ +   G  ++SGS D  + +W+  +       +T +S       
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 94  ----ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149
                 V         +DE ++SG+ D  V  ++               P  + Q H   
Sbjct: 305 IGHKDFVLSVATTQ--NDEYILSGSKDRGVLFWDKKSG----------NPLLMLQGHRNS 352

Query: 150 VKKLAVEVG-----NPHVVWSASEDGTLRQHDFRQ 179
           V  +AV  G       +V  + S D   R   +++
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNC 674
                        D   +    Q  +YI SGS D     W+K++G  + ML G    V  
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355

Query: 675 VQC------HPFDCVVATSGIDNTIKIW 696
           V         P   V AT   D   +IW
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 37/291 (12%), Positives = 75/291 (25%), Gaps = 41/291 (14%)

Query: 48  GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-----------------T 90
            H   V  + +++ G  L +G + T   V+  S   L+  +                   
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 91  GHSANVFCTKFVPETSDELVVS--------GAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142
                +    F P+       +           + ++ +            D   +   L
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202
                 R  ++         +  + EDG               AGS  +  R  + D   
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR--VWDSET 236

Query: 203 GAKRSLADPPKQTLSLKSCDISSTRPH----LLLVGGSDAFARLYDRRMLPPLTSCQKRM 258
           G      D   ++ +     + S         ++ G  D   +L++ +     +  +   
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296

Query: 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309
           S    V Y               +  V  + N E +L       V   D  
Sbjct: 297 SGTCEVTYIGHKD---------FVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 12/70 (17%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLG------------DEAVVNCVQCHPFDCVVAT 686
           G  + SGS D    +W  Q                       +  V  V     D  + +
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 325

Query: 687 SGIDNTIKIW 696
              D  +  W
Sbjct: 326 GSKDRGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRL-------IKMLLG 667
              +     ++   +   +     G YIA+GS D    +W+ +TG L        +   G
Sbjct: 193 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 252

Query: 668 DEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
            +  V  V        V +  +D ++K+W
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 37  VRRLSQERELEGHQGCVNAI------SWNSKGSLLISGSDDTHINVWSYSSRKL 84
            +  +    L+GH+  V ++      S   + ++  +GS D    +W Y  +K+
Sbjct: 337 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY--KKI 388

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
           H+ CV ++ +   G   +S   D  +N W       +   ++  S++V          D+
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--QSKESSSVLSCDISV--DDK 319

Query: 109 LVVSGAGDAEVRLFNL 124
            +V+G+GD +  ++ +
Sbjct: 320 YIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 8e-09
 Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 1/58 (1%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G +  S   D     W    G  I     + + V        D  + T   D    ++
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 7e-06
 Identities = 25/292 (8%), Positives = 74/292 (25%), Gaps = 26/292 (8%)

Query: 48  GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS----RKLLHSIETGHSANVFCTKFVP 103
            H   V A++ ++    + +G     + VW  S       +           +   K +P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
           +    +V   A    +          +    ++                      +    
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC-----FSCCSD 162

Query: 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223
            + +      Q   RQ        S      +       G   ++     +         
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD 222

Query: 224 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283
            +++   L       +    +   +   +S  + +       Y   +H          + 
Sbjct: 223 FTSQIFSL------GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH-------ESCVL 269

Query: 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335
            + F+  G+  + +     +      +    A  +   ++S ++S   +++ 
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPY---GASIFQSKESSSVLSCDISVDD 318

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 5/31 (16%), Positives = 11/31 (35%)

Query: 48  GHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
                V +   +     +++GS D    V+ 
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 4e-09
 Identities = 43/262 (16%), Positives = 79/262 (30%), Gaps = 33/262 (12%)

Query: 39  RLSQERELEGHQGCVN-AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 97
            L   + L+GH   V   + +   G+ ++SGSDD  + VWS  + K L ++  GH+  V+
Sbjct: 5   ELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVW 61

Query: 98  CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV 157
            ++                           + R L                    +    
Sbjct: 62  SSQMRDNIIIS-----------------GSTDRTLKVWNAETGECIHTLYGHTSTVRCMH 104

Query: 158 GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS------LADP 211
            +   V S S D TLR  D   G             R +  D R     +      + DP
Sbjct: 105 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 164

Query: 212 PKQTLSLK------SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265
             +T                     ++ G  D   R++D      + +     S    + 
Sbjct: 165 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224

Query: 266 YFCPMHLSEHGRSSLHLTHVTF 287
               + +S +  S++ +  +  
Sbjct: 225 LKDNILVSGNADSTVKIWDIKT 246

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 1e-06
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 17/137 (12%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
             L+GH   V ++ ++  G  ++SGS DT I VW   +   +H++ TGH +     +   
Sbjct: 171 HTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQSLTSGMEL-- 225

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
              D ++VSG  D+ V+++++                   Q   +    +     N + V
Sbjct: 226 --KDNILVSGNADSTVKIWDIKTG----------QCLQTLQGPNKHQSAVTCLQFNKNFV 273

Query: 164 WSASEDGTLRQHDFRQG 180
            ++S+DGT++  D + G
Sbjct: 274 ITSSDDGTVKLWDLKTG 290

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLL-----GDEAVVNCVQCHPFDCVVATSGIDNT- 692
            +++ + SDDG   +W+ +TG  I+ L+     G   VV  ++      V A    + T 
Sbjct: 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329

Query: 693 ---IKIW 696
              + + 
Sbjct: 330 ETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 4e-05
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHP 679
           G+ I SGSDD    +W   TG+ ++ L+G    V   Q   
Sbjct: 27  GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           G ++ SGS D    +W+ +TG  I  L G +++ + ++      ++ +   D+T+KIW
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIW 242

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET----GHSANVFCTKFVPE 104
           HQ  V  + +N   + +I+ SDD  + +W   + + + ++ T    G    V+  +    
Sbjct: 259 HQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN- 315

Query: 105 TSDELVVSGAGD----AEVRLFNLS 125
            +  +   G+ +     ++ + +  
Sbjct: 316 -TKLVCAVGSRNGTEETKLLVLDFD 339

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 4e-09
 Identities = 27/247 (10%), Positives = 64/247 (25%), Gaps = 5/247 (2%)

Query: 40  LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 99
           L +          V  + ++     ++SG  D  I +W  ++ +    + TGH+ +V C 
Sbjct: 5   LQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCL 61

Query: 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
           ++                          +     +  +             K  ++ V +
Sbjct: 62  QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219
                  +    L  H                   +  + +   +              +
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH--KR 179

Query: 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279
                  R  L++ G SD   RL+D      L   +       C+ +     +S      
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239

Query: 280 LHLTHVT 286
           + +  + 
Sbjct: 240 IKVWDLV 246

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 13/173 (7%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
                 H  ++  +            + ++++ +         R L GH+  +  + +  
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN--TSTCEFVRTLNGHKRGIACLQYR- 187

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
              L++SGS D  I +W       L  +E                    +VSGA D +++
Sbjct: 188 -DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-----RIVSGAYDGKIK 241

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
           +++L            +    L + H+ RV +L     +   + S+S D T+ 
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVE-HSGRVFRLQF---DEFQIVSSSHDDTIL 290

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 641 YIASGSDDGRWFIWEKQTG---------RLIKMLLGDEAVVNCVQCHPFDCVVATSGIDN 691
            I SG+ DG+  +W+               ++ L+     V  +Q   F   + +S  D+
Sbjct: 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDD 287

Query: 692 TIKIW 696
           TI IW
Sbjct: 288 TILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCV 683
              I SG  D    IW+K T    ++L G    V C+Q      +
Sbjct: 25  DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVW 77
           R L  H G V  + ++     ++S S D  I +W
Sbjct: 261 RTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 641 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           YI S S D    +W   T   ++ L G +  + C      D +V +   DNTI++W
Sbjct: 150 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLW 203

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 31/308 (10%), Positives = 77/308 (25%), Gaps = 24/308 (7%)

Query: 46  LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET--GHSANVFCTKFVP 103
            +  +  ++ I      SLL+  S D  + V+ +  +     +     +   + C  F+ 
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
            T  ++ V       +++  +   S + L +N         C     K +A        V
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI--------------LLDLRCGAKRSLA 209
                 G          S+     +                         L      +  
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186

Query: 210 DPPKQTLSLKSCD-ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268
                         +             D    +          +  KR +      + C
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA------FRC 240

Query: 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 328
                +    +  +  + FSP  + +  + S   +   ++     +   +   +   ++ 
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ-TRKKIKNFAKFNEDSVVK 299

Query: 329 FTPTLNGL 336
              + N L
Sbjct: 300 IACSDNIL 307

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 6   FHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL 65
           +   SI   +     D + D  +S +  +    R     +       VN+I ++ +   L
Sbjct: 209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR--LNLKDTNLAYPVNSIEFSPRHKFL 266

Query: 66  ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125
            +   D  I+ W+  +RK + +    +  +V   K     SD ++     D      +  
Sbjct: 267 YTAGSDGIISCWNLQTRKKIKNFAKFNEDSV--VKIAC--SDNILCLATSD------DTF 316

Query: 126 RFSGRGLDDNAITPSALY 143
           + +        +  S++Y
Sbjct: 317 KTNAAIDQTIELNASSIY 334

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 641 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
           ++ +   DG    W  QT + IK           V+    D ++  +  D+T K  
Sbjct: 265 FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-VVKIACSDNILCLATSDDTFKTN 319

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.5 bits (129), Expect = 2e-08
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
           H G V  ++W+  G+ + S S D  I +W+ ++ K+  +I  G          +   + +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQ 294

Query: 109 LVVSGAGDAEVRLFNL 124
            +VS + +  +   N 
Sbjct: 295 ALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKML-LGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT 697
           G  IAS S D    IW   T ++ K + +G       +        + +   +  I    
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

Query: 698 P 698
           P
Sbjct: 310 P 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 698
           GD I   +     +     +    ++           +  P     A+  +   ++IW  
Sbjct: 29  GDKIQYCNGTSV-YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT 87

Query: 699 S 699
           +
Sbjct: 88  T 88

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWE-KQTGRLIKMLLGDEAVVN 673
            +   +   +     K A+      D +A+GS D   FI+  K+  ++IK L   +  VN
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN 262

Query: 674 CVQCHPFDCVVATSGIDNTIKIWT 697
            +        + +SG D  IK W 
Sbjct: 263 NLLWET-PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 3e-06
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
           + + GH   + A++ N     LISGS D  I  WS        S+   HS  +       
Sbjct: 7   KTISGHNKGITALTVNP----LISGSYDGRIMEWS------SSSMHQDHSNLIVSLDNSK 56

Query: 104 ET 105
             
Sbjct: 57  AQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 6e-06
 Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 3/117 (2%)

Query: 7   HDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLI 66
              +     D        D+       S    R S+   +        A     +  L+ 
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231

Query: 67  SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123
           +GS DT+I ++S      +      H   V    +        +VS   DA ++ +N
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET---PSTLVSSGADACIKRWN 285

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.1 bits (128), Expect = 3e-08
 Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 53  VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVV 111
           ++  +WN   + +    ++  ++++  S  K +   E   H+  V    + P      +V
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP--DSNRIV 67

Query: 112 SGAGDAEVRLFN 123
           +   D    ++ 
Sbjct: 68  TCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 639 GDYIASGSDDGRWFIWEKQTGR--LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 696
              IA   ++    I+EK   +   +  L      V  V   P    + T G D    +W
Sbjct: 19  RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 6e-06
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY 79
          NH + ++     +  Q  EL+ H G V  + W    + +++   D +  VW+ 
Sbjct: 28 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 24/182 (13%), Positives = 57/182 (31%), Gaps = 12/182 (6%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M       G ++ +  + +      V+H   +  +   +      L      + A+++ +
Sbjct: 194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 253

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           + SL+ +G D     +++Y S     S   G       +     T+ E   +    A   
Sbjct: 254 ESSLVAAGHDC-FPVLFTYDSAAGKLSF-GGRLDVPKQSSQRGLTARERFQNLDKKASSE 311

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
               +      L  N+++  ++      +  +            +   DG +   D R  
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC----------TTGMDGGMSIWDVRSL 361

Query: 181 SS 182
            S
Sbjct: 362 ES 363

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 2/77 (2%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET-GHSANVFCTKFVPETSD 107
                             +   D  I VW  ++ K +                 V  T +
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-TGN 308

Query: 108 ELVVSGAGDAEVRLFNL 124
             ++S + D  +  + L
Sbjct: 309 GRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 4e-06
 Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 639 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ---CHPFDCVVATSGIDNTIKI 695
               A+   D    +W+  T + ++    D+  +   Q       +  + +  +D T+  
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 696 W 696
           +
Sbjct: 323 Y 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 11/119 (9%), Positives = 37/119 (31%), Gaps = 5/119 (4%)

Query: 49  HQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPET 105
            +     +S++   + +         +        K+  +       S+ V   KF P  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164
             + + SG    +V ++  +    +  +   +   + +Q     +  ++ +     +  
Sbjct: 76  GSQYLCSGDESGKVIVWGWT--FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 7/89 (7%)

Query: 38  RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 97
                   LE      +        +      +   +  +   +RK+     T    N+ 
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-----TEVKNNLT 318

Query: 98  CTKFVPETSDELVVSGAGDAEVRLFNLSR 126
             +   +   + V+    D ++  F L +
Sbjct: 319 DLRLSAD--RKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 6/49 (12%), Positives = 20/49 (40%)

Query: 42  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET 90
           + R++   +  +  +  ++    ++   DD  I  +     +   ++ET
Sbjct: 306 KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 13/120 (10%), Positives = 32/120 (26%), Gaps = 3/120 (2%)

Query: 7   HDGSIYDMLDTRHTDTRPDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLL 65
           + G I+ +  +           +L         R    +++  H+          +    
Sbjct: 214 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 273

Query: 66  ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125
              +    + V    + + L   E GH   +       +    L     GD  + + +  
Sbjct: 274 RHKTASRFVVVLDAKTGERLAKFEMGHE--IDSINVSQDEKPLLYALSTGDKTLYIHDAE 331

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 381 YYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440
                +  E  + + + +     H       A + + +   + + A+R    A  +    
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ--GNIEEAVRLYRKALEVFPEF 338

Query: 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475
             AH  ++  L+Q  K +EAL     A  + P+ +
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 2/131 (1%)

Query: 419 WKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478
                + A+ DC  A  +D  S +AH ++ +   ++  Y EA+     A  L     +  
Sbjct: 50  KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-- 107

Query: 479 EKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSER 538
              ++I   +  A+ ++ N   +     E      L+      R     +  ++    E 
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167

Query: 539 EDSDYDEEVEV 549
           +     ++  +
Sbjct: 168 DGHIRAQQACI 178

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 5/83 (6%), Positives = 21/83 (25%), Gaps = 2/83 (2%)

Query: 12  YDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSD 70
               +           +   +             +         I+    G  + ++ S 
Sbjct: 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSF 264

Query: 71  DTHINVWSYSSRKLLHSIETGHS 93
              ++V   ++  +  ++  G +
Sbjct: 265 CNTVSVIDTATNTITATMAVGKN 287

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	737
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.79
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.66
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.62
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.58
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.56
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.37
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.26
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.2
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.18
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.85
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.79
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.77
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.7
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.46
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.37
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.28
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.21
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.19
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.19
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.15
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.11
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.06
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.98
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.73
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.54
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.39
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.37
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.31
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.23
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.79
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.08
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.55
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.36
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.33
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.95
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.94
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.86
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.43
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.27
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	88.81
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	85.6
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	84.62
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	82.86
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	82.33

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-38  Score=328.93  Aligned_cols=213  Identities=19%  Similarity=0.266  Sum_probs=173.7

Q ss_pred             cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE---EE-EcccCccceEEEEEeeCCCCCEEEEE
Q 004685           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL---HS-IETGHSANVFCTKFVPETSDELVVSG  113 (737)
Q Consensus        38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~---~~-~~~~h~~~V~~v~~sp~~~~~~l~sg  113 (737)
                      ++.+.++++ +|...|+|++|+|+|++||+|+ ||.|+|||+.++...   .. ....|...|.+++|+|+  +++|++|
T Consensus        40 ~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d--g~~l~s~  115 (337)
T d1gxra_          40 RHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVG  115 (337)
T ss_dssp             SEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEE
T ss_pred             CCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC--CCEEEEe
Confidence            445666677 7999999999999999999997 899999999765321   11 12578999999999999  7999999


Q ss_pred             ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCcc
Q 004685          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (737)
Q Consensus       114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~  193 (737)
                      +.||.|++||+......        ....+..|...+.++.|+| ++.++++++.|+.|++|++.+++..          
T Consensus       116 ~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~----------  176 (337)
T d1gxra_         116 GEASTLSIWDLAAPTPR--------IKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLV----------  176 (337)
T ss_dssp             ESSSEEEEEECCCC--E--------EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE----------
T ss_pred             ecccccccccccccccc--------ccccccccccccccccccc-ccccccccccccccccccccccccc----------
Confidence            99999999999864332        2466778999999999999 6689999999999999999876521          


Q ss_pred             ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004685          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (737)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (737)
                                     .....|...+.+++|+++ +..+++++.|+.+++||+++++.+..+.                  
T Consensus       177 ---------------~~~~~~~~~v~~l~~s~~-~~~~~~~~~d~~v~i~d~~~~~~~~~~~------------------  222 (337)
T d1gxra_         177 ---------------RQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQQHD------------------  222 (337)
T ss_dssp             ---------------EEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEE------------------
T ss_pred             ---------------cccccccccccccccccc-ccccccccccccccccccccceeecccc------------------
Confidence                           122345678999999997 5899999999999999999876544321                  


Q ss_pred             CCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       274 ~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                         +. ..|.+++|+|++++|++|+.|+.+++||+.++
T Consensus       223 ---~~-~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~  256 (337)
T d1gxra_         223 ---FT-SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             ---CS-SCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             ---cc-cceEEEEEcccccccceecccccccccccccc
Confidence               22 25999999999999999999999999998763

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-38  Score=324.63  Aligned_cols=210  Identities=18%  Similarity=0.296  Sum_probs=170.6

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      .....+|+||+++|++|+|+|++++||||+.||+|+|||+.+++.+..+ .+|...|.+++|+|+  +.+++++..++.+
T Consensus         7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~h~~~V~~~~~~~~--~~~~~~~~~~~~~   83 (317)
T d1vyhc1           7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCSADMTI   83 (317)
T ss_dssp             SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCC
T ss_pred             CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCcEEEEeeecc--ccccccccccccc
Confidence            3455789999999999999999999999999999999999999999999 799999999999999  7999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      .+|+.....          ....+..|...+.++.|+| ++..+++++.|+.+++||++++...                
T Consensus        84 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~----------------  136 (317)
T d1vyhc1          84 KLWDFQGFE----------CIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCV----------------  136 (317)
T ss_dssp             CEEETTSSC----------EEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE----------------
T ss_pred             ccccccccc----------cccccccccccceeeeccC-CCceEEeeccCcceeEeecccceee----------------
Confidence            999987532          2456678899999999999 5688899999999999999887522                


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                               .....|...+.+++|+|+ +.+|++++.|+.|++|++++.+.+..+...                    ..
T Consensus       137 ---------~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~--------------------~~  186 (317)
T d1vyhc1         137 ---------KTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAELREH--------------------RH  186 (317)
T ss_dssp             ---------EEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCC--------------------SS
T ss_pred             ---------eEEccCCCcceeeecccC-CCEEEEEeCCCeEEEEeeccceeeEEEecC--------------------CC
Confidence                     112245678899999997 589999999999999999987765544221                    11


Q ss_pred             cceeEEEEcC--------------------CCCEEEEEeCCCeEEEEEcCC
Q 004685          280 LHLTHVTFSP--------------------NGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       280 ~~i~~v~~sp--------------------~g~~l~~g~~dg~v~iwd~~~  310 (737)
                       .+.+++|+|                    .+.++++++.|+.|++||+.+
T Consensus       187 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  236 (317)
T d1vyhc1         187 -VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  236 (317)
T ss_dssp             -CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             -CceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC
Confidence             244455544                    455677777777777777665

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-38  Score=336.53  Aligned_cols=211  Identities=18%  Similarity=0.280  Sum_probs=166.7

Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-----------------ccCccceEEEEEeeCCCCCE
Q 004685           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-----------------TGHSANVFCTKFVPETSDEL  109 (737)
Q Consensus        47 ~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~-----------------~~h~~~V~~v~~sp~~~~~~  109 (737)
                      .+|++.|+||+|+|+|++||+|+ |+.|+|||+.+++.+..+.                 ..|...|.+++|+|+  +.+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--~~~  135 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GKF  135 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT--SSE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC--CCc
Confidence            36999999999999999999987 8999999999988776652                 246677999999999  799


Q ss_pred             EEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCC
Q 004685          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (737)
Q Consensus       110 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~  189 (737)
                      |++|+.||.|++||.....          ......+|...|.++.+++ ++..+++++.++.+++||++.....      
T Consensus       136 l~s~~~dg~v~i~~~~~~~----------~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~------  198 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRK----------IVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS------  198 (388)
T ss_dssp             EEEEETTSCEEEEETTTTE----------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE------
T ss_pred             ceecccccccccccccccc----------ccccccccccccccccccc-ccccccccccceeeeeeeccccccc------
Confidence            9999999999999988632          3567788999999999999 5678889999999999999876421      


Q ss_pred             CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccc
Q 004685          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (737)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (737)
                           ..               ..+.....++.+++.++.+|++++.|+.|++||.+++.....+....           
T Consensus       199 -----~~---------------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-----------  247 (388)
T d1erja_         199 -----LT---------------LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-----------  247 (388)
T ss_dssp             -----EE---------------EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------
T ss_pred             -----cc---------------cccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccc-----------
Confidence                 00               01223456677777667899999999999999999877554432111           


Q ss_pred             ccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       270 ~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                        ....+|.. .|.+++|+|++++|++++.||.|++||+.++
T Consensus       248 --~~~~~h~~-~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         248 --ESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             -----CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             --ccccCCCC-CEEEEEECCCCCEEEEEECCCcEEEEeccCC
Confidence              11122333 6999999999999999999999999998874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-36  Score=316.76  Aligned_cols=214  Identities=23%  Similarity=0.344  Sum_probs=174.0

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      .+..++|+||+++|++|+|+|++++||||+.||+|+|||+.+++.+..+ ..|..+|.+++|+|+  +.++++|+.|+.+
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~v~~~~~--~~~l~~~~~d~~i  121 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GNYVACGGLDNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-ECSCSCEEEEEECTT--SSEEEEEETTCCE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEE-ecccccEEeeEeecc--ceeeeeeccccee
Confidence            4567889999999999999999999999999999999999999999998 789999999999999  7999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      ++|+.......      ......+.+|........... + ..+.....|.....+........                
T Consensus       122 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~----------------  177 (340)
T d1tbga_         122 SIYNLKTREGN------VRVSRELAGHTGYLSCCRFLD-D-NQIVTSSGDTTCALWDIETGQQT----------------  177 (340)
T ss_dssp             EEEESSSSCSC------CCEEEEECCCSSCEEEEEEEE-T-TEEEEEETTTEEEEEETTTTEEE----------------
T ss_pred             ecccccccccc------cccceeccccccccccccccc-c-ccccccccccccccccccccccc----------------
Confidence            99998764322      123456677877777666655 3 56778888999999987765311                


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                               .....+...+....+.+. ..++++++.|+.|++||+++++.+..+                    .+|..
T Consensus       178 ---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~v~i~d~~~~~~~~~~--------------------~~h~~  227 (340)
T d1tbga_         178 ---------TTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTF--------------------TGHES  227 (340)
T ss_dssp             ---------EEEECCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEE--------------------CCCSS
T ss_pred             ---------ccccccceeEeeeccccc-cceeEEeecCceEEEEECCCCcEEEEE--------------------eCCCC
Confidence                     111123456777888886 589999999999999999987655443                    22333


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                       .|++++|+|++.+|++|+.||.|++||+...
T Consensus       228 -~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         228 -DINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             -CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             -CeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence             5999999999999999999999999998874

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.4e-36  Score=308.07  Aligned_cols=205  Identities=15%  Similarity=0.189  Sum_probs=169.0

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      +.+.+.+++++|+|+.||.+. ++.|.+||+.+......+ .+|...|++++|+|+  +++|++|+.||.|+|||+....
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~-~~H~~~v~~~~~sp~--g~~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEEEESSSTT
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEE-cCCCCCEEEEEEeCC--CCeEeccccCceEeeeeeeccc
Confidence            455667899999999999886 567999999999888888 799999999999999  7999999999999999998643


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~--Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (737)
                      ..        ....+..|...|.+++|+| ++.+|++++.  ++.+++|++.+++..                       
T Consensus        92 ~~--------~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~-----------------------  139 (311)
T d1nr0a1          92 HI--------LKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSN-----------------------  139 (311)
T ss_dssp             CC--------EEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBC-----------------------
T ss_pred             cc--------cccccccccCccccccccc-ccccccccccccccccccccccccccc-----------------------
Confidence            21        1355778999999999999 5577778775  466999999877632                       


Q ss_pred             eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004685          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (737)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  286 (737)
                        .....|...|.+++|+|++...|++|+.|+.|++||+++.+....+                    .+|.. .|++++
T Consensus       140 --~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~--------------------~~~~~-~i~~v~  196 (311)
T d1nr0a1         140 --GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF--------------------GEHTK-FVHSVR  196 (311)
T ss_dssp             --BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE--------------------CCCSS-CEEEEE
T ss_pred             --ccccccccccccccccccceeeeccccccccccccccccccccccc--------------------ccccc-cccccc
Confidence              2344677889999999986667999999999999999976644332                    12332 599999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          287 FSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       287 ~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      |+|++++|++++.|+.|++||+.++.
T Consensus       197 ~~p~~~~l~~~~~d~~v~~~d~~~~~  222 (311)
T d1nr0a1         197 YNPDGSLFASTGGDGTIVLYNGVDGT  222 (311)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cCcccccccccccccccccccccccc
Confidence            99999999999999999999988753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.6e-35  Score=300.78  Aligned_cols=209  Identities=17%  Similarity=0.189  Sum_probs=163.2

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      +..++++||.++|++|+|+|++++||||+.||+|++||+.+++.+..+...|...|++++|+|+  +. +++++.|+.++
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~--g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK--GD-LFTVSWDDHLK   79 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT--SC-EEEEETTTEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc--ce-eecccceeeEE
Confidence            4568899999999999999999999999999999999999999888886679999999999998  44 56777899999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      +|+........       .......+...+.+++|+| ++.+++++ .++.+.+|+......                  
T Consensus        80 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~-~g~~~~~~-~~~~i~~~~~~~~~~------------------  132 (299)
T d1nr0a2          80 VVPAGGSGVDS-------SKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYSHGKLTE------------------  132 (299)
T ss_dssp             EECSSSSSSCT-------TSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEETTEEEE------------------
T ss_pred             EeccCCccccc-------ccccccccccccccccccc-cccccccc-ccccccccccccccc------------------
Confidence            99987532211       1233445778899999999 45666554 457899998543210                  


Q ss_pred             cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (737)
                             .    .....+.+++|+|+ +++|++|+.|+.|++||+++.+......                   ..|.. 
T Consensus       133 -------~----~~~~~~~~~~~s~~-~~~l~~g~~dg~i~~~d~~~~~~~~~~~-------------------~~~~~-  180 (299)
T d1nr0a2         133 -------V----PISYNSSCVALSND-KQFVAVGGQDSKVHVYKLSGASVSEVKT-------------------IVHPA-  180 (299)
T ss_dssp             -------E----ECSSCEEEEEECTT-SCEEEEEETTSEEEEEEEETTEEEEEEE-------------------EECSS-
T ss_pred             -------c----cccccccccccccc-cccccccccccccccccccccccccccc-------------------ccccc-
Confidence                   0    01235678999997 6899999999999999998654221110                   11222 


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .|++++|+|++.+|++++.|+.|++||+.++
T Consensus       181 ~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  211 (299)
T d1nr0a2         181 EITSVAFSNNGAFLVATDQSRKVIPYSVANN  211 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            5999999999999999999999999998764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-34  Score=304.64  Aligned_cols=226  Identities=15%  Similarity=0.170  Sum_probs=173.3

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCC
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~  126 (737)
                      +.++|+|++|+|+|++||+|+.||.|+|||+.+++  .+..+ .+|..+|.+++|+|+  +++|++|+.|++|+|||+..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l-~gH~~~V~~l~fsp~--~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT--TTEEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe-cCCCCCEEEEEECCC--CCEEEEEECCCeEEEEeecc
Confidence            45789999999999999999999999999998775  55666 799999999999999  79999999999999999985


Q ss_pred             CCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCcee
Q 004685          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (737)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (737)
                      ...        .+...+.+|...|++++|+| +++.|++++.|+.|++|++......                     ..
T Consensus        83 ~~~--------~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~---------------------~~  132 (371)
T d1k8kc_          83 RTW--------KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW---------------------WV  132 (371)
T ss_dssp             TEE--------EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE---------------------EE
T ss_pred             ccc--------cccccccccccccccccccc-ccccceeecccCcceeeeeeccccc---------------------cc
Confidence            432        22455677899999999999 6689999999999999998876421                     01


Q ss_pred             eccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEE
Q 004685          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (737)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  286 (737)
                      .......|...|.+++|+|+ +.+|++|+.|+.|++||................  ....+........+|.. .|.+++
T Consensus       133 ~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~v~~~~  208 (371)
T d1k8kc_         133 CKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG--SKMPFGELMFESSSSCG-WVHGVC  208 (371)
T ss_dssp             EEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB--SCCCTTCEEEECCCCSS-CEEEEE
T ss_pred             cccccccccccccccccccc-ccceeccccCcEEEEEeeccCcccccccccccc--ccccceeeeeeccCccC-cEEEEE
Confidence            12223456778999999997 589999999999999999765432221110000  00000001111223333 699999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          287 FSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       287 ~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      |+|+|++|++++.|+.|++||+.++
T Consensus       209 ~s~~g~~l~s~~~d~~i~iwd~~~~  233 (371)
T d1k8kc_         209 FSANGSRVAWVSHDSTVCLADADKK  233 (371)
T ss_dssp             ECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             eecccccccccccCCcceEEeeecc
Confidence            9999999999999999999998764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-33  Score=294.53  Aligned_cols=248  Identities=17%  Similarity=0.251  Sum_probs=170.7

Q ss_pred             ceeecccCCce-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEE
Q 004685           43 ERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (737)
Q Consensus        43 ~~~l~~H~~~V-~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~i  121 (737)
                      ..+|+||...| +|++|  ++++||||+.||+|+|||+.+++.+..+ .+|..+|.+++|+|+   .+|++|+.|+.|++
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~l~~s~~---~~l~s~s~D~~i~i   78 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG---GILVSGSTDRTVRV   78 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEEETT---TEEEEEETTCCEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEE-ECCCCCEEEEEEcCC---CEEEEEeccccccc
Confidence            56799998875 66665  5789999999999999999999999999 799999999999986   68999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004685          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~  201 (737)
                      |++.......        ......+........+.+ +..++++++.|+.|++||++..............  .......
T Consensus        79 w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~  147 (355)
T d1nexb2          79 WDIKKGCCTH--------VFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY--PLVFHTP  147 (355)
T ss_dssp             EETTTTEEEE--------EECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CC--CEEESCT
T ss_pred             cccccccccc--------cccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceecccccccee--ccceecc
Confidence            9998633210        111222333445566667 6688999999999999999887644221111110  0011101


Q ss_pred             CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc
Q 004685          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (737)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (737)
                      ......+.....+...+...  .++ +++++++..|+.|++||+++++.+....                    ++. ..
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~--~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~--------------------~~~-~~  203 (355)
T d1nexb2         148 EENPYFVGVLRGHMASVRTV--SGH-GNIVVSGSYDNTLIVWDVAQMKCLYILS--------------------GHT-DR  203 (355)
T ss_dssp             TTCTTEEEEEECCSSCEEEE--EEE-TTEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCS-SC
T ss_pred             ccccceeeeeeecccccccc--ccc-cceeeeecccceeeeeecccccceeeee--------------------ccc-cc
Confidence            01111111112233334333  343 5799999999999999999876543321                    111 24


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004685          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (737)
Q Consensus       282 i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (737)
                      +.++.|+|++.++++++.|+.|++||+.++.....+..+...+..++|+|
T Consensus       204 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~  253 (355)
T d1nexb2         204 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD  253 (355)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS
T ss_pred             cccccccccceeeecccccceEEeeecccccccccccccccccccccccc
Confidence            88999999999999999999999999999877666666666666666654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-32  Score=282.65  Aligned_cols=223  Identities=21%  Similarity=0.307  Sum_probs=161.9

Q ss_pred             cccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCC
Q 004685           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (737)
Q Consensus        38 ~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  117 (737)
                      .++++.+.|+||++.|.+ +++++|++||||+.||+|+|||+.+++++..+ .+|...|.+++|+|+    +|++|+.|+
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~~~~----~l~s~s~D~   77 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRDN----IIISGSTDR   77 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEETT----EEEEEETTS
T ss_pred             CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCCEEEEEeCCC----ccccceecc
Confidence            456778899999999865 36667999999999999999999999999999 799999999999864    899999999


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      .+++|+......          ......+...+......+   ..++.+..|+.+.+|+..++...           ..+
T Consensus        78 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~-----------~~~  133 (342)
T d2ovrb2          78 TLKVWNAETGEC----------IHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL-----------HVL  133 (342)
T ss_dssp             CEEEEETTTTEE----------EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE-----------EEE
T ss_pred             cccccccccccc----------eecccccceeEeeeeccc---ccccccccceeEEEeecccccce-----------eee
Confidence            999999885321          233344455555555543   56778999999999999887522           000


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (737)
                      .              ... . ....+.+. ...+++++.|+.|++||.+....+..+                    .+|
T Consensus       134 ~--------------~~~-~-~~~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~--------------------~~~  176 (342)
T d2ovrb2         134 M--------------GHV-A-AVRCVQYD-GRRVVSGAYDFMVKVWDPETETCLHTL--------------------QGH  176 (342)
T ss_dssp             E--------------CCS-S-CEEEEEEC-SSCEEEEETTSCEEEEEGGGTEEEEEE--------------------CCC
T ss_pred             e--------------ccc-c-cceeeccc-cceeeeecCCCeEEEeecccceeeEEE--------------------cCc
Confidence            0              001 1 11222333 468899999999999999876544332                    112


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeec
Q 004685          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT  330 (737)
Q Consensus       278 ~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  330 (737)
                      .   .....+++++.+|++|+.||.|++||+..++.......+...+..++++
T Consensus       177 ~---~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  226 (342)
T d2ovrb2         177 T---NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK  226 (342)
T ss_dssp             S---SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE
T ss_pred             c---cccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC
Confidence            2   3345566789999999999999999999877655555444444444433

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-31  Score=274.26  Aligned_cols=229  Identities=14%  Similarity=0.155  Sum_probs=188.4

Q ss_pred             cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEEcccCccceEEEEEeeCC
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPET  105 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~--~~~~~~h~~~V~~v~~sp~~  105 (737)
                      ..+.+|+  +...+..+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++..  ..+ ..|..+|.+++|+|+ 
T Consensus        38 ~~v~i~~--~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~d-  113 (311)
T d1nr0a1          38 TSVYTVP--VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSE-  113 (311)
T ss_dssp             TEEEEEE--TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTT-
T ss_pred             CEEEEEE--CCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccc-ccccCcccccccccc-
Confidence            4577777  5677888889999999999999999999999999999999999887643  345 689999999999999 


Q ss_pred             CCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 004685          106 SDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       106 ~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~  183 (737)
                       +.+|++++.  +..+++|++....          +...+.+|...|++++|+|++..+|++|+.|+.|++||+++.+. 
T Consensus       114 -~~~l~~~~~~~~~~~~v~~~~~~~----------~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-  181 (311)
T d1nr0a1         114 -SKRIAAVGEGRERFGHVFLFDTGT----------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-  181 (311)
T ss_dssp             -SCEEEEEECCSSCSEEEEETTTCC----------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-
T ss_pred             -cccccccccccccccccccccccc----------ccccccccccccccccccccceeeeccccccccccccccccccc-
Confidence             689988886  4669999998632          25667889999999999997666789999999999999987652 


Q ss_pred             CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (737)
                                              ......|...|.++.|+|+ ++++++++.|+.|++||++++..+..+...      
T Consensus       182 ------------------------~~~~~~~~~~i~~v~~~p~-~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~------  230 (311)
T d1nr0a1         182 ------------------------KSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDD------  230 (311)
T ss_dssp             ------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCT------
T ss_pred             ------------------------ccccccccccccccccCcc-cccccccccccccccccccccccccccccc------
Confidence                                    2223356778999999997 689999999999999999987655444211      


Q ss_pred             ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                             .....+|.. .|++++|+|++++|++|+.||.|+|||+.++
T Consensus       231 -------~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         231 -------SLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             -------TSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             -------ccccccccc-cccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence                   111133444 6999999999999999999999999999874

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.8e-31  Score=270.05  Aligned_cols=188  Identities=15%  Similarity=0.191  Sum_probs=153.7

Q ss_pred             EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (737)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  163 (737)
                      ....+ .+|..+|++|+|+|+  +++|++|+.||+|+|||+.+..          .+..+.+|...|.+++|+| ++.++
T Consensus         9 ~~~~L-~GH~~~I~~l~~sp~--~~~l~s~s~Dg~i~iWd~~~~~----------~~~~~~~h~~~V~~~~~~~-~~~~~   74 (317)
T d1vyhc1           9 EKYAL-SGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETGD----------FERTLKGHTDSVQDISFDH-SGKLL   74 (317)
T ss_dssp             CSCEE-ECCSSCEEEEEECSS--SSEEEEEESSSCEEEEETTTCC----------CCEEECCCSSCEEEEEECT-TSSEE
T ss_pred             ccEEE-cCCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCC----------EEEEEeCCCCcEEEEeeec-ccccc
Confidence            34567 799999999999999  7999999999999999998632          3678889999999999999 66899


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw  243 (737)
                      ++++.++.+.+|+......                         ......+...+.++.|+|+ ++.+++++.|+.+++|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~  128 (317)
T d1vyhc1          75 ASCSADMTIKLWDFQGFEC-------------------------IRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMW  128 (317)
T ss_dssp             EEEETTSCCCEEETTSSCE-------------------------EECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEE
T ss_pred             ccccccccccccccccccc-------------------------ccccccccccceeeeccCC-CceEEeeccCcceeEe
Confidence            9999999999999877652                         2223456778899999997 5799999999999999


Q ss_pred             ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCC
Q 004685          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA  323 (737)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~  323 (737)
                      |+++++.+..+.                    ++.. .+.+++|+|++.+|++++.|+.|++|++.++.....+..+...
T Consensus       129 ~~~~~~~~~~~~--------------------~~~~-~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~  187 (317)
T d1vyhc1         129 EVQTGYCVKTFT--------------------GHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV  187 (317)
T ss_dssp             ETTTCCEEEEEE--------------------CCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ecccceeeeEEc--------------------cCCC-cceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCC
Confidence            999876544432                    1222 5899999999999999999999999999997766666566666


Q ss_pred             CeeeeeccC
Q 004685          324 SKIMSFTPT  332 (737)
Q Consensus       324 ~~~~~~~p~  332 (737)
                      +..++|+|.
T Consensus       188 i~~~~~~~~  196 (317)
T d1vyhc1         188 VECISWAPE  196 (317)
T ss_dssp             EEEEEECCS
T ss_pred             ceEEEEeec
Confidence            666666663

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.1e-30  Score=270.89  Aligned_cols=213  Identities=16%  Similarity=0.247  Sum_probs=154.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCC-cEEEEECCCC--eEEEEEcccC-ccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCC
Q 004685           52 CVNAISWNSKGSLLISGSDDT-HINVWSYSSR--KLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg-~V~vwd~~~~--~~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~  127 (737)
                      .+++++|+|+++.|+.++.+. .|+.||....  ..+..+ .+| ...|++++|+|..++.+|++|+.||+|+|||+...
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~-~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE-eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            467899999999999886553 3566665433  345566 566 57899999999755789999999999999999753


Q ss_pred             CCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                      .....  ........+..|..+|.+++|++ ++.++++++  .++.+++|+..+++.                       
T Consensus        98 ~~~~~--~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~-----------------------  151 (325)
T d1pgua1          98 KESNS--VEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNS-----------------------  151 (325)
T ss_dssp             GGGTE--EEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCE-----------------------
T ss_pred             cceee--eecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeeccccc-----------------------
Confidence            22110  00001123456889999999999 556666654  467899999987652                       


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  285 (737)
                        +.....|...|.+++|+|+++.++++++.|+.+++||.+..+.......                 ..++.. .|.++
T Consensus       152 --~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~-----------------~~~~~~-~v~~v  211 (325)
T d1pgua1         152 --LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT-----------------HHKQGS-FVRDV  211 (325)
T ss_dssp             --EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-----------------SSCTTC-CEEEE
T ss_pred             --ceeeeecccccccccccccccceEEEeecccccccccccccccceeccc-----------------ccCCCC-ccEEe
Confidence              2333467889999999998766788999999999999886553322211                 012222 59999


Q ss_pred             EEcCC-CCEEEEEeCCCeEEEEEcCCC
Q 004685          286 TFSPN-GEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       286 ~~sp~-g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +|+|+ +.+|++++.|+.|++||++++
T Consensus       212 ~~~pd~~~~l~s~~~d~~i~iwd~~~~  238 (325)
T d1pgua1         212 EFSPDSGEFVITVGSDRKISCFDGKSG  238 (325)
T ss_dssp             EECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred             eeccccceeccccccccceeeeeeccc
Confidence            99996 688999999999999998774

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.7e-31  Score=266.57  Aligned_cols=192  Identities=17%  Similarity=0.145  Sum_probs=142.0

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcE
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  119 (737)
                      .+++++|+||.++|++|+|+|    |+||+.||+|++||+.++     . ..|...|.+++++++   ..+++++.|++|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~-~~h~~~V~~~~~~~~---~~~~s~s~D~~v   69 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----H-QDHSNLIVSLDNSKA---QEYSSISWDDTL   69 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----E-CCCCSCEEEEECCST---TCCEEEETTTEE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----C-CCCCCCEEEEEecCC---CeEEEEeecccc
Confidence            478899999999999999987    999999999999998754     2 579999999999876   578999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      ++|++...                 .....+.++.+++ ++..++ .+.++.+.+|+...+...              . 
T Consensus        70 ~~w~~~~~-----------------~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~--------------~-  115 (287)
T d1pgua2          70 KVNGITKH-----------------EFGSQPKVASANN-DGFTAV-LTNDDDLLILQSFTGDII--------------K-  115 (287)
T ss_dssp             EETTEEEE-----------------ECSSCEEEEEECS-SSEEEE-EETTSEEEEEETTTCCEE--------------E-
T ss_pred             cccccccc-----------------ccccceeeeeecc-CCceEE-Eeecccceeeeccceeee--------------e-
Confidence            99998631                 1234567788887 445554 455677899998776522              0 


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (737)
                             .+.    ...  ...+++++ +..+++++.| +.+++|++...+....+.                    ...
T Consensus       116 -------~~~----~~~--~~~~~~~~-~~~~~v~~~~~~~v~~~~~~~~~~~~~~~--------------------~~~  161 (287)
T d1pgua2         116 -------SVR----LNS--PGSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLK--------------------TPL  161 (287)
T ss_dssp             -------EEE----CSS--CEEEEEEC-SSEEEEEETTTSCEEEEETTEEEEEEECS--------------------SCC
T ss_pred             -------ecc----ccc--eeeeeecc-Ccceeeeccccceeeeeeccccceeeeee--------------------ecc
Confidence                   000    011  23456665 3567766666 579999987544222211                    112


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       279 ~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      ...+++++|+|++.+|++|+.||.|++||+.++.
T Consensus       162 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~  195 (287)
T d1pgua2         162 RAKPSYISISPSETYIAAGDVMGKILLYDLQSRE  195 (287)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCceeEEEeccCccccccccccccccceeecccc
Confidence            2259999999999999999999999999998754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.3e-30  Score=273.86  Aligned_cols=168  Identities=8%  Similarity=0.052  Sum_probs=133.9

Q ss_pred             CccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc
Q 004685           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT  171 (737)
Q Consensus        92 h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~  171 (737)
                      ...+|+|++|+|+  +.+|++|+.||.|+|||+...+.        .....+.+|..+|++++|+| ++++|++|+.|++
T Consensus         6 ~~~pIt~~~~s~d--g~~la~~~~~~~i~iw~~~~~~~--------~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~   74 (371)
T d1k8kc_           6 LVEPISCHAWNKD--RTQIAICPNNHEVHIYEKSGNKW--------VQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRN   74 (371)
T ss_dssp             CSSCCCEEEECTT--SSEEEEECSSSEEEEEEEETTEE--------EEEEEEECCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred             CCCCeEEEEECCC--CCEEEEEeCCCEEEEEECCCCCE--------EEEEEecCCCCCEEEEEECC-CCCEEEEEECCCe
Confidence            4588999999999  79999999999999999975321        23677889999999999999 6689999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCc
Q 004685          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (737)
Q Consensus       172 I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~  251 (737)
                      |++||+..+...                       .......+...|.+++|+|+ ++.|++++.|+.|++|++......
T Consensus        75 i~vWd~~~~~~~-----------------------~~~~~~~~~~~v~~i~~~p~-~~~l~~~s~d~~i~i~~~~~~~~~  130 (371)
T d1k8kc_          75 AYVWTLKGRTWK-----------------------PTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDW  130 (371)
T ss_dssp             EEEEEEETTEEE-----------------------EEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTE
T ss_pred             EEEEeecccccc-----------------------cccccccccccccccccccc-cccceeecccCcceeeeeeccccc
Confidence            999999865411                       12223456778999999997 689999999999999998765432


Q ss_pred             ccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .....                ....+.. .|.+++|+|++++|++|+.|+.|++|++...
T Consensus       131 ~~~~~----------------~~~~~~~-~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_         131 WVCKH----------------IKKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             EEEEE----------------ECTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             ccccc----------------ccccccc-ccccccccccccceeccccCcEEEEEeeccC
Confidence            21110                0112322 5999999999999999999999999998763

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.2e-30  Score=274.13  Aligned_cols=243  Identities=15%  Similarity=0.137  Sum_probs=154.7

Q ss_pred             ceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE------EEEEcccCccceEEEEEe---eCC--CCCEEE
Q 004685           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKFV---PET--SDELVV  111 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~------~~~~~~~h~~~V~~v~~s---p~~--~~~~l~  111 (737)
                      ....++|.+.|.++++++  ++|+||+.|++|+|||..+.+.      .... ..|...+..+...   +..  ...+++
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEee-eeccCCceEeeeEeeeccCCCCCcEEE
Confidence            345679999999999864  6899999999999999765431      1122 2344444333322   111  034688


Q ss_pred             EEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCC----CcEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 004685          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN----PHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (737)
Q Consensus       112 sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~----~~~l~s~s~Dg~I~vwdl~~~~~~~~~~  187 (737)
                      +++.||.|++|++.....................+...+..++|.+..    ..++++++.||.+++|++..........
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            999999999999875432211000000011112345567788887743    3688899999999999987543211000


Q ss_pred             CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (737)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (737)
                      ..+......+       .........+...+.+++|+|+ + +|++|+.|+.|++||+++++++..+....         
T Consensus       164 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~s~d-g-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~---------  225 (393)
T d1sq9a_         164 TLNWSPTLEL-------QGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFESQH---------  225 (393)
T ss_dssp             TTCCCCEEEE-------EEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEECCC---------
T ss_pred             eeeeccceec-------ccceecccCCCCcEEEEEECCC-C-EEEEEeCCCcEEEEeeccccccccccccc---------
Confidence            1111100001       0112223344566889999996 3 89999999999999999887654432110         


Q ss_pred             ccccccCCCCcccceeEEEEcCCCCEEEEEeCCC---eEEEEEcCCCC
Q 004685          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAG  312 (737)
Q Consensus       268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg---~v~iwd~~~~~  312 (737)
                         .+  .+|.. +|++++|+|+|++|++|+.|+   .|++||+.++.
T Consensus       226 ---~l--~~h~~-~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~  267 (393)
T d1sq9a_         226 ---SM--INNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE  267 (393)
T ss_dssp             --------CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             ---cc--ccccc-eEEEcccccccceeeeecCCCCcceeeecccccce
Confidence               01  23443 699999999999999999986   59999999864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-29  Score=254.95  Aligned_cols=203  Identities=14%  Similarity=0.277  Sum_probs=151.5

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      +.+..+.+|...|+|++|  ++++||||+.||+|+|||+.+++++..+ .+|..+|++++|+    +++|++|+.|+.|+
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~v~~~----~~~l~s~s~D~~i~   78 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQYD----ERVIITGSSDSTVR   78 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEECC----SSEEEEEETTSCEE
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEeeeecc----cceeeccccccccc
Confidence            445556788999999764  7899999999999999999999999999 7999999999873    57999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      +|++.....          ......+...  ...+.+ ....++++..++.+.+|+.......                 
T Consensus        79 ~~~~~~~~~----------~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  128 (293)
T d1p22a2          79 VWDVNTGEM----------LNTLIHHCEA--VLHLRF-NNGMMVTCSKDRSIAVWDMASPTDI-----------------  128 (293)
T ss_dssp             EEESSSCCE----------EEEECCCCSC--EEEEEC-CTTEEEEEETTSCEEEEECSSSSCC-----------------
T ss_pred             ccccccccc----------cccccccccc--cccccc-cccceeecccccceeEeeccccccc-----------------
Confidence            999986432          2222222222  233344 4467889999999999998876532                 


Q ss_pred             cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (737)
                           ........+...+..+.+.+   ..+++++.|+.|++||+++.+.+..+.                    ++.. 
T Consensus       129 -----~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~--------------------~~~~-  179 (293)
T d1p22a2         129 -----TLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLN--------------------GHKR-  179 (293)
T ss_dssp             -----EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSS-
T ss_pred             -----cccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEEc--------------------cccc-
Confidence                 11222234566777777765   478899999999999999877554432                    1221 


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .+..+.+  ++.++++++.||.|++||+.+.
T Consensus       180 ~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~  208 (293)
T d1p22a2         180 GIACLQY--RDRLVVSGSSDNTIRLWDIECG  208 (293)
T ss_dssp             CEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred             ccccccC--CCCeEEEecCCCEEEEEecccc
Confidence            3656655  4678999999999999998874

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-29  Score=264.80  Aligned_cols=173  Identities=12%  Similarity=0.143  Sum_probs=134.7

Q ss_pred             eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcE
Q 004685           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (737)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  162 (737)
                      +.+..+  .|...|++++|+|+  +.+|++|+ ||.|+|||+........     ........|...|.+++|+| ++++
T Consensus        43 ~~~~~~--~H~~~V~~v~fs~~--g~~latg~-dg~V~iWd~~~~~~~~~-----~~~~~~~~h~~~I~~v~~s~-dg~~  111 (337)
T d1gxra_          43 RQINTL--NHGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISHPGNKSP-----VSQLDCLNRDNYIRSCKLLP-DGCT  111 (337)
T ss_dssp             EEEEEE--CCSSCCCEEEECSS--SSEEEEEC-BSEEEEEETTSTTCCSC-----SEEEECSCTTSBEEEEEECT-TSSE
T ss_pred             eEEEEC--CCCCcEEEEEECCC--CCEEEEEE-CCEEEEEEccCCcccce-----eEEeeecCCCCcEEEEEEcC-CCCE
Confidence            344554  69999999999999  79999987 89999999986433211     11233457899999999999 6689


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (737)
Q Consensus       163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i  242 (737)
                      |++++.||.|++||+......                       .......|...+.+++|+|+ +.++++++.|+.|++
T Consensus       112 l~s~~~dg~i~iwd~~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~  167 (337)
T d1gxra_         112 LIVGGEASTLSIWDLAAPTPR-----------------------IKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAV  167 (337)
T ss_dssp             EEEEESSSEEEEEECCCC--E-----------------------EEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred             EEEeecccccccccccccccc-----------------------cccccccccccccccccccc-ccccccccccccccc
Confidence            999999999999998765421                       11222345678899999997 589999999999999


Q ss_pred             EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ||+++.+.....                    .+|.. .|.+++|++++.++++++.|+.|++||++++
T Consensus       168 ~~~~~~~~~~~~--------------------~~~~~-~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~  215 (337)
T d1gxra_         168 WDLHNQTLVRQF--------------------QGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLREG  215 (337)
T ss_dssp             EETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccccccccccc--------------------ccccc-ccccccccccccccccccccccccccccccc
Confidence            999876543322                    12222 5999999999999999999999999998874

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.6e-30  Score=270.42  Aligned_cols=195  Identities=15%  Similarity=0.180  Sum_probs=140.3

Q ss_pred             EEEEeCCCcEEEEECCCCeEE----EEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCC-------
Q 004685           65 LISGSDDTHINVWSYSSRKLL----HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD-------  133 (737)
Q Consensus        65 lasgs~dg~V~vwd~~~~~~~----~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-------  133 (737)
                      .+.+..++.+.+|+....+..    ... .+|.+.|+||+|+|+  |.+|++|+ |+.|+|||+..+......       
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~H~~~V~~l~fs~d--g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~  106 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKS-LDHTSVVCCVKFSND--GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN  106 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEE-EECSSCCCEEEECTT--SSEEEEEC-BSCEEEEETTTCCEEEEECC-----
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEee-CCCCCcEEEEEECCC--CCEEEEEe-CCeEEEEEecccceEeeeccccccc
Confidence            345667788899997654322    222 369999999999999  79999986 899999999864321100       


Q ss_pred             -CCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCC
Q 004685          134 -DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  212 (737)
Q Consensus       134 -~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (737)
                       ............|...|++++|+| ++++|++|+.||.|++||...++.                         +....
T Consensus       107 ~~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~-------------------------~~~~~  160 (388)
T d1erja_         107 KDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKI-------------------------VMILQ  160 (388)
T ss_dssp             ------------CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-------------------------EEEEC
T ss_pred             ccccccccccccCCCCCEEEEEECC-CCCcceeccccccccccccccccc-------------------------ccccc
Confidence             000011223346788899999999 678999999999999999887652                         22234


Q ss_pred             CCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CC
Q 004685          213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NG  291 (737)
Q Consensus       213 ~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g  291 (737)
                      .|...|.+++|+++ +..+++++.++.+++||.++........                     +.. ...++.++| ++
T Consensus       161 ~h~~~v~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~---------------------~~~-~~~~~~~~~~~~  217 (388)
T d1erja_         161 GHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLS---------------------IED-GVTTVAVSPGDG  217 (388)
T ss_dssp             CCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEE---------------------CSS-CEEEEEECSTTC
T ss_pred             cccccccccccccc-cccccccccceeeeeeeccccccccccc---------------------ccc-ccccccccCCCC
Confidence            57788999999997 5799999999999999998765332211                     111 245555554 88


Q ss_pred             CEEEEEeCCCeEEEEEcCCCC
Q 004685          292 EEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       292 ~~l~~g~~dg~v~iwd~~~~~  312 (737)
                      .+|++|+.|+.|++||+.++.
T Consensus       218 ~~l~~~~~d~~i~i~~~~~~~  238 (388)
T d1erja_         218 KYIAAGSLDRAVRVWDSETGF  238 (388)
T ss_dssp             CEEEEEETTSCEEEEETTTCC
T ss_pred             CeEEEEcCCCeEEEeecccCc
Confidence            999999999999999998753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-29  Score=262.78  Aligned_cols=221  Identities=13%  Similarity=0.104  Sum_probs=153.8

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE--cccCccceEEEEEeeCCCCCEEEEEECCCc
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI--ETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~--~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~  118 (737)
                      +.+..+++|++.|++|+|+|++++||+|+.||+|+|||+.++.....+  ..+|..+|.+++|+|+. +.+|++|+.||.
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~-~~~l~sg~~d~~   80 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGE   80 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSC
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC-CCEEEEcccccc
Confidence            455667899999999999999999999999999999999765432222  13699999999999985 668999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCCceeeccCCCc-eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEE
Q 004685          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRR-VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (737)
Q Consensus       119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~  197 (737)
                      |++|++.....          ......+... .....+.+ +...+++++.|+.+++||++......          ...
T Consensus        81 v~~w~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~----------~~~  139 (342)
T d1yfqa_          81 ILKVDLIGSPS----------FQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGV----------IAV  139 (342)
T ss_dssp             EEEECSSSSSS----------EEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBC----------EEE
T ss_pred             eeeeecccccc----------ccccccccccccccccccc-ccccccccccccccceeeccccccce----------eee
Confidence            99999986432          2223333333 33444444 66889999999999999997654320          000


Q ss_pred             EeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCC
Q 004685          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (737)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (737)
                      ..         ..............+.+. +..+++++.|+.|++||++...........                 ...
T Consensus       140 ~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-----------------~~~  192 (342)
T d1yfqa_         140 KN---------LNSNNTKVKNKIFTMDTN-SSRLIVGMNNSQVQWFRLPLCEDDNGTIEE-----------------SGL  192 (342)
T ss_dssp             EE---------SCSSSSSSCCCEEEEEEC-SSEEEEEESTTEEEEEESSCCTTCCCEEEE-----------------CSC
T ss_pred             cc---------cccccccceeeeeeeecc-CCceeeecCCCcEEEEecccCcccceeeee-----------------ccc
Confidence            00         000111223345566665 579999999999999999876543322110                 011


Q ss_pred             cccceeEEEEc-CCCCEEEEEeCCCeEEEEEcCCC
Q 004685          278 SSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       278 ~~~~i~~v~~s-p~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .. .+.+..+. +++..+++++.||.+.+|++...
T Consensus       193 ~~-~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~  226 (342)
T d1yfqa_         193 KY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             SS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             cc-ceeeeEeecCCCCEEEeecCCCeEEEEEecCC
Confidence            11 25555554 57889999999999999998763

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.6e-29  Score=267.84  Aligned_cols=94  Identities=14%  Similarity=0.214  Sum_probs=85.6

Q ss_pred             EEeeecccccceeeeecccCCCCEEEEecCCCc---EEEEEcCcccEEEEee-------------cCCCceEEEEecCCC
Q 004685          618 RYVGHCNVGTDIKQASFLGQRGDYIASGSDDGR---WFIWEKQTGRLIKMLL-------------GDEAVVNCVQCHPFD  681 (737)
Q Consensus       618 ~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D~~---i~iWd~~t~~~~~~l~-------------gH~~~V~~v~~sp~~  681 (737)
                      .+.+|.+.|+++.    |+|||++|++|+.|++   |+|||+++++++..|.             ||++.|++|+|+||+
T Consensus       226 ~l~~h~~~V~~l~----~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~  301 (393)
T d1sq9a_         226 SMINNSNSIRSVK----FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG  301 (393)
T ss_dssp             ---CCCCCEEEEE----ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred             ccccccceEEEcc----cccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC
Confidence            5678989998887    9999999999999975   9999999999998885             899999999999999


Q ss_pred             CeEEEEecCCcEEEEcCCCCCCccccCCCCCCCh
Q 004685          682 CVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT  715 (737)
Q Consensus       682 ~~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~  715 (737)
                      ++|||||.|++|||||+++++++.+++||.+++.
T Consensus       302 ~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         302 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             CeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence            9999999999999999999999999999998774

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=4.3e-28  Score=247.54  Aligned_cols=165  Identities=11%  Similarity=0.133  Sum_probs=122.2

Q ss_pred             CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceee-ccCCCceeEEEEecCCC
Q 004685           82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNP  160 (737)
Q Consensus        82 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~  160 (737)
                      |+..+.+ .+|..+|++++|+|+  +.+|++|+.||+|++||+..+..          ...+ ..|...|++++|+| ++
T Consensus         2 g~~~~~~-~GH~~~V~~l~~s~d--g~~l~s~s~Dg~v~vWd~~~~~~----------~~~~~~~h~~~v~~v~~~~-~g   67 (299)
T d1nr0a2           2 GSIDQVR-YGHNKAITALSSSAD--GKTLFSADAEGHINSWDISTGIS----------NRVFPDVHATMITGIKTTS-KG   67 (299)
T ss_dssp             TEEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCE----------EECSSCSCSSCEEEEEECT-TS
T ss_pred             CccceEc-CCCCCCcEEEEECCC--CCEEEEEcCCCeEEEEECCCCcE----------EEEEcCCCCCcEEEEEeec-cc
Confidence            4555666 899999999999999  79999999999999999986332          3333 46899999999999 44


Q ss_pred             cEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcE
Q 004685          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (737)
Q Consensus       161 ~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i  240 (737)
                      .+ ++++.|+.+++|++.........                      .....+...+.+++|+|+ +..++++ .++.+
T Consensus        68 ~~-~~~~~d~~v~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~s~~-g~~~~~~-~~~~i  122 (299)
T d1nr0a2          68 DL-FTVSWDDHLKVVPAGGSGVDSSK----------------------AVANKLSSQPLGLAVSAD-GDIAVAA-CYKHI  122 (299)
T ss_dssp             CE-EEEETTTEEEEECSSSSSSCTTS----------------------CCEEECSSCEEEEEECTT-SSCEEEE-ESSEE
T ss_pred             ee-ecccceeeEEEeccCCccccccc----------------------cccccccccccccccccc-ccccccc-ccccc
Confidence            54 47778999999998765421000                      000123456788999997 4555555 46789


Q ss_pred             EEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      ++|+.......                         .....+.+++|+|++++|++|+.||.|++||+.+
T Consensus       123 ~~~~~~~~~~~-------------------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~  167 (299)
T d1nr0a2         123 AIYSHGKLTEV-------------------------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG  167 (299)
T ss_dssp             EEEETTEEEEE-------------------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred             ccccccccccc-------------------------cccccccccccccccccccccccccccccccccc
Confidence            99986532110                         0111478899999999999999999999999876

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=3.5e-27  Score=244.40  Aligned_cols=170  Identities=14%  Similarity=0.174  Sum_probs=129.5

Q ss_pred             EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (737)
Q Consensus        84 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  163 (737)
                      ..+++ .+|.++|++++|+|+  +.+|++|+.||+|+|||+...          +.+..+..|...|.+++|+| ++.++
T Consensus        47 ~~~tL-~GH~~~I~~l~~s~~--~~~l~sgs~Dg~v~iWd~~~~----------~~~~~~~~~~~~v~~v~~~~-~~~~l  112 (340)
T d1tbga_          47 TRRTL-RGHLAKIYAMHWGTD--SRLLVSASQDGKLIIWDSYTT----------NKVHAIPLRSSWVMTCAYAP-SGNYV  112 (340)
T ss_dssp             EEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTT----------EEEEEEECSCSCEEEEEECT-TSSEE
T ss_pred             eeEEE-CCCCCCEEEEEECCC--CCEEEEEECCCceeeeecccc----------eeEEEEecccccEEeeEeec-cceee
Confidence            44567 899999999999999  799999999999999999863          23677888999999999999 66899


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEE
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iw  243 (737)
                      ++|+.|+.+.+|+........                     ........+...........  ...+.....|.....+
T Consensus       113 ~~~~~d~~i~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  169 (340)
T d1tbga_         113 ACGGLDNICSIYNLKTREGNV---------------------RVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALW  169 (340)
T ss_dssp             EEEETTCCEEEEESSSSCSCC---------------------CEEEEECCCSSCEEEEEEEE--TTEEEEEETTTEEEEE
T ss_pred             eeecccceeeccccccccccc---------------------ccceeccccccccccccccc--cccccccccccccccc
Confidence            999999999999987765320                     01111223444445555554  3588888899999999


Q ss_pred             ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      +...........                     .....+....+.+.+.++++|+.|+.|++||+.++
T Consensus       170 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~  216 (340)
T d1tbga_         170 DIETGQQTTTFT---------------------GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG  216 (340)
T ss_dssp             ETTTTEEEEEEE---------------------CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             cccccccccccc---------------------ccceeEeeeccccccceeEEeecCceEEEEECCCC
Confidence            887543221110                     11224888999999999999999999999998763

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.2e-27  Score=249.01  Aligned_cols=203  Identities=17%  Similarity=0.178  Sum_probs=130.6

Q ss_pred             EEEcccCccce-EEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEE
Q 004685           86 HSIETGHSANV-FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (737)
Q Consensus        86 ~~~~~~h~~~V-~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~  164 (737)
                      .++ .+|...| +|++|  +  +++|++|+.||+|+|||+.+.          +++..+.+|...|++++|+| + .+|+
T Consensus         6 ~tL-~GH~~~vitc~~~--~--~~~l~tgs~Dg~i~vWd~~~~----------~~~~~l~~H~~~V~~l~~s~-~-~~l~   68 (355)
T d1nexb2           6 TTL-RGHMTSVITCLQF--E--DNYVITGADDKMIRVYDSINK----------KFLLQLSGHDGGVWALKYAH-G-GILV   68 (355)
T ss_dssp             EEE-ECCSSSCEEEEEE--E--TTEEEEEETTTEEEEEETTTT----------EEEEEEECCSSCEEEEEEET-T-TEEE
T ss_pred             EEE-CCcCCCcEEEEEE--C--CCEEEEEeCCCeEEEEECCCC----------cEEEEEECCCCCEEEEEEcC-C-CEEE
Confidence            345 7998875 56554  5  579999999999999999863          33788899999999999998 4 5889


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (737)
Q Consensus       165 s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd  244 (737)
                      +|+.|++|++|++......                       ..............+.+.++ +..+++++.|+.|++||
T Consensus        69 s~s~D~~i~iw~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~iw~  124 (355)
T d1nexb2          69 SGSTDRTVRVWDIKKGCCT-----------------------HVFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTLHVWK  124 (355)
T ss_dssp             EEETTCCEEEEETTTTEEE-----------------------EEECCCSSCEEEEEEEEETT-EEEEEEEETTSEEEEEE
T ss_pred             EEecccccccccccccccc-----------------------cccccccccccccccccccc-cceeeeecCCCcEEEEE
Confidence            9999999999999876522                       11111223344556667775 57999999999999999


Q ss_pred             CCCCCCcccccCCCCCCCCcccccc--ccc-cCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecC
Q 004685          245 RRMLPPLTSCQKRMSPPPCVNYFCP--MHL-SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG  321 (737)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~  321 (737)
                      ++.......................  ... ....+.   .....+.+++.+++++..|+.|++||+.+++.........
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  201 (355)
T d1nexb2         125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM---ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  201 (355)
T ss_dssp             CCC-----------CCCEEESCTTTCTTEEEEEECCS---SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             ccCCceeccccccceeccceeccccccceeeeeeecc---ccccccccccceeeeecccceeeeeecccccceeeeeccc
Confidence            9877654333211110000000000  000 000111   2234566788999999999999999999876544444444


Q ss_pred             CCCeeeeeccC
Q 004685          322 DASKIMSFTPT  332 (737)
Q Consensus       322 ~~~~~~~~~p~  332 (737)
                      .......|+|.
T Consensus       202 ~~~~~~~~~~~  212 (355)
T d1nexb2         202 DRIYSTIYDHE  212 (355)
T ss_dssp             SCEEEEEEETT
T ss_pred             ccccccccccc
Confidence            44455555553

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.2e-27  Score=245.85  Aligned_cols=227  Identities=12%  Similarity=0.120  Sum_probs=177.0

Q ss_pred             ccccccccccccccceeecccC-CceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEE--------EEEcccCccceE
Q 004685           29 SLQMHSSLVRRLSQERELEGHQ-GCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLL--------HSIETGHSANVF   97 (737)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~s~--~g~~lasgs~dg~V~vwd~~~~~~~--------~~~~~~h~~~V~   97 (737)
                      .++.++....+......+.+|. ..|++++|+|  ++.+||+|+.||+|+|||+..++..        ..+ ..|..+|.
T Consensus        41 ~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~-~~~~~~v~  119 (325)
T d1pgua1          41 FVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPIS  119 (325)
T ss_dssp             EEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEE
T ss_pred             EEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccc-ccccCcEE
Confidence            3556665556667777888885 6899999998  6789999999999999998754322        223 46888999


Q ss_pred             EEEEeeCCCCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004685           98 CTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (737)
Q Consensus        98 ~v~~sp~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw  175 (737)
                      +++|+++  +.++++++.  ++.+++|+....          ..+..+.+|...|.+++|+|.++.++++++.|+.|++|
T Consensus       120 ~v~~s~~--~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~  187 (325)
T d1pgua1         120 DISWDFE--GRRLCVVGEGRDNFGVFISWDSG----------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY  187 (325)
T ss_dssp             EEEECTT--SSEEEEEECCSSCSEEEEETTTC----------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEE
T ss_pred             EEEECCC--CCccceeeccccceEEEEeeccc----------ccceeeeecccccccccccccccceEEEeecccccccc
Confidence            9999999  688877764  678999998753          23677888999999999999777778899999999999


Q ss_pred             EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (737)
Q Consensus       176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~  255 (737)
                      |+...+..                      ........+...|.+++|+|+.+.+|++++.|+.|++||+++++.+..+.
T Consensus       188 d~~~~~~~----------------------~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~  245 (325)
T d1pgua1         188 QGPPFKFS----------------------ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE  245 (325)
T ss_dssp             ETTTBEEE----------------------EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred             cccccccc----------------------eecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc
Confidence            98765421                      12333456778899999999877899999999999999999887665543


Q ss_pred             CCCCCCCCccccccccccCCCCcccceeEEEEc---CCCCEEEEEeCCCeEEEEEcCCC
Q 004685          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS---PNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s---p~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .                    |.. ++..+.|+   |+|++|++++.|+.|+|||+.++
T Consensus       246 ~--------------------~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         246 D--------------------DQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             B--------------------TTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             c--------------------ccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence            2                    111 23333333   68999999999999999999874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=2.2e-27  Score=248.41  Aligned_cols=192  Identities=10%  Similarity=0.058  Sum_probs=149.4

Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC--CcEEEEecCCCCCC
Q 004685           54 NAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEVRLFNLSRFSGR  130 (737)
Q Consensus        54 ~~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d--g~I~iwd~~~~~~~  130 (737)
                      ..-.||| ||+++|+++. |.|++||+.++..++ +  .|...|.+++|+|+  +++|++++.+  ..|++||...+.  
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spD--g~~l~~~~~~~g~~v~v~d~~~~~--   77 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGK--   77 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEE-C--SCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCC--
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEE-c--cCCCCEEEEEECCC--CCEEEEEEcCCCCEEEEEECCCCc--
Confidence            3467999 9999999875 799999999887664 3  58999999999999  6888776654  379999998632  


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (737)
                               ...+..|...|.+++|+| ++++|++++.++.+++|++..++..                         ..
T Consensus        78 ---------~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~-------------------------~~  122 (360)
T d1k32a3          78 ---------AEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPT-------------------------VI  122 (360)
T ss_dssp             ---------EEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE-------------------------EE
T ss_pred             ---------EEEeeCCCceEEeeeecc-cccccceecccccccccccccccee-------------------------ee
Confidence                     566778999999999999 6689999999999999999877521                         11


Q ss_pred             CCCCccceEEEEEecCCCcEEEEEe----------CCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685          211 PPKQTLSLKSCDISSTRPHLLLVGG----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (737)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~t~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (737)
                      ...+...+.+++|+|+ +++|+.+.          .++.+++||+.+++.....                     .+ ..
T Consensus       123 ~~~~~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~---------------------~~-~~  179 (360)
T d1k32a3         123 ERSREAMITDFTISDN-SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT---------------------TE-NS  179 (360)
T ss_dssp             EECSSSCCCCEEECTT-SCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS---------------------CS-SS
T ss_pred             eecccccccchhhccc-eeeeeeeccccccceeeccccceeeeccccCceeeec---------------------cc-cc
Confidence            1234556788999997 57777543          4456999999876532211                     11 12


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      .+..++|+|+|++|+.++.++.+.+|+....
T Consensus       180 ~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         180 HDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             BEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             ccccccccCCCCEEEEEeCCCceEccccccc
Confidence            4788999999999999999999999997664

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=9.6e-26  Score=232.63  Aligned_cols=179  Identities=11%  Similarity=0.089  Sum_probs=128.1

Q ss_pred             eEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcE
Q 004685           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (737)
Q Consensus        83 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  162 (737)
                      +.+. +.++|.+.|++|+|+|+  +++|++|+.||+|+|||+......       ..+....+|..+|.+++|+|.++.+
T Consensus         2 ~~v~-~~~~h~d~I~~l~fsp~--~~~L~s~s~Dg~v~iwd~~~~~~~-------~~~~~~~~h~~~V~~v~f~~~~~~~   71 (342)
T d1yfqa_           2 QIVQ-IEQAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKN-------VDLLQSLRYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             EEEE-CSSCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTE-------EEEEEEEECSSCEEEEEEEESSSEE
T ss_pred             CeEE-cCCCCCCCEEEEEEeCC--CCEEEEEECCCeEEEEEccCCCcc-------eEEEEecCCCCCEEEEEEeCCCCCE
Confidence            3444 34899999999999999  799999999999999999764321       1133344699999999999977789


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEE
Q 004685          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (737)
Q Consensus       163 l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~i  242 (737)
                      |++|+.|+.|++|++.......                        .....+........+.+. ...+++++.|+.+++
T Consensus        72 l~sg~~d~~v~~w~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  126 (342)
T d1yfqa_          72 IYVGTVQGEILKVDLIGSPSFQ------------------------ALTNNEANLGICRICKYG-DDKLIAASWDGLIEV  126 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSEE------------------------ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEE
T ss_pred             EEEcccccceeeeecccccccc------------------------cccccccccccccccccc-cccccccccccccce
Confidence            9999999999999998765320                        000111222334444554 579999999999999


Q ss_pred             EECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 004685          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (737)
Q Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~  311 (737)
                      ||++...........              .... ........+.+.+.+..+++++.|+.|++||+...
T Consensus       127 wd~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  180 (342)
T d1yfqa_         127 IDPRNYGDGVIAVKN--------------LNSN-NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC  180 (342)
T ss_dssp             ECHHHHTTBCEEEEE--------------SCSS-SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCC
T ss_pred             eeccccccceeeecc--------------cccc-cccceeeeeeeeccCCceeeecCCCcEEEEecccC
Confidence            999765433222110              0000 11113556778889999999999999999998874

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-24  Score=224.29  Aligned_cols=169  Identities=17%  Similarity=0.156  Sum_probs=123.7

Q ss_pred             EECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEe
Q 004685           77 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  156 (737)
Q Consensus        77 wd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  156 (737)
                      |+..+.+....+ ++|...|.+ +++++  |++|+||+.||+|+|||+.+.          +++..+.+|...|.+++|+
T Consensus         1 W~~~~~~~~~~l-~GH~~~V~s-~~~~~--g~~l~sgs~Dg~i~vWd~~~~----------~~~~~~~~h~~~V~~v~~~   66 (342)
T d2ovrb2           1 WRRGELKSPKVL-KGHDDHVIT-CLQFC--GNRIVSGSDDNTLKVWSAVTG----------KCLRTLVGHTGGVWSSQMR   66 (342)
T ss_dssp             HHHSCCCCCEEE-ECSTTSCEE-EEEEE--TTEEEEEETTSCEEEEETTTC----------CEEEECCCCSSCEEEEEEE
T ss_pred             CCCCCCCcCEEE-CCcCCceEE-EEEEC--CCEEEEEeCCCeEEEEECCCC----------CEEEEEeCCCCCEEEEEeC
Confidence            555566667777 799999865 36677  689999999999999999863          3377889999999999998


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeC
Q 004685          157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS  236 (737)
Q Consensus       157 p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~  236 (737)
                      |   .+|++++.|+.+++|+.......                         .....+...+......   +..++.+..
T Consensus        67 ~---~~l~s~s~D~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~---~~~~~~~~~  115 (342)
T d2ovrb2          67 D---NIIISGSTDRTLKVWNAETGECI-------------------------HTLYGHTSTVRCMHLH---EKRVVSGSR  115 (342)
T ss_dssp             T---TEEEEEETTSCEEEEETTTTEEE-------------------------EEECCCSSCEEEEEEE---TTEEEEEET
T ss_pred             C---Cccccceecccccccccccccce-------------------------ecccccceeEeeeecc---ccccccccc
Confidence            7   48999999999999998775421                         0011122334444443   358888999


Q ss_pred             CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 004685          237 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (737)
Q Consensus       237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~  313 (737)
                      |+.+.+|+..+++....+..                    .   ......+.+....+++++.|+.|++||......
T Consensus       116 d~~i~~~~~~~~~~~~~~~~--------------------~---~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  169 (342)
T d2ovrb2         116 DATLRVWDIETGQCLHVLMG--------------------H---VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC  169 (342)
T ss_dssp             TSEEEEEESSSCCEEEEEEC--------------------C---SSCEEEEEECSSCEEEEETTSCEEEEEGGGTEE
T ss_pred             ceeEEEeecccccceeeeec--------------------c---cccceeeccccceeeeecCCCeEEEeeccccee
Confidence            99999999988764333211                    0   122334556777899999999999999987543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=5.8e-25  Score=236.52  Aligned_cols=214  Identities=10%  Similarity=0.000  Sum_probs=137.0

Q ss_pred             EcCCC--CEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC
Q 004685           58 WNSKG--SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  135 (737)
Q Consensus        58 ~s~~g--~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  135 (737)
                      ++.+.  .++++.+.||+|+|||+.+++.+..+ ..| ..+..++|+|+  |++|++++.|+.|++||+.+.+....   
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l-~~g-~~~~~vafSPD--Gk~l~~~~~d~~v~vwd~~t~~~~~~---   98 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI-DTG-YAVHISRMSAS--GRYLLVIGRDARIDMIDLWAKEPTKV---   98 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEE-ECC-SSEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCEEE---
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEE-eCC-CCeeEEEECCC--CCEEEEEeCCCCEEEEEccCCceeEE---
Confidence            44443  35688899999999999999999999 555 46899999999  79999999999999999987543110   


Q ss_pred             CCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCc
Q 004685          136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT  215 (737)
Q Consensus       136 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (737)
                        ..+....+|...+.+++|+|++..+++++..++.+.+||...+...           ..+ .......  ........
T Consensus        99 --~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~-----------~~~-~~~~~~~--~~~~~~~~  162 (426)
T d1hzua2          99 --AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK-----------QIV-STRGMTV--DTQTYHPE  162 (426)
T ss_dssp             --EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE-----------EEE-ECCEECS--SSCCEESC
T ss_pred             --EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcccee-----------EEe-eccCCCc--cceeecCC
Confidence              0122233566667777888855445667778999999999887632           000 0000000  00000112


Q ss_pred             cceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEE
Q 004685          216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL  295 (737)
Q Consensus       216 ~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~  295 (737)
                      .....+.+++++..++.+....+.+.+++..........                 .  . .....+..++|+|++++++
T Consensus       163 ~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------~--~-~~~~~~~~~~~~~~g~~~~  222 (426)
T d1hzua2         163 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT-----------------S--I-GAAPFLADGGWDSSHRYFM  222 (426)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEE-----------------E--E-ECCSSEEEEEECTTSCEEE
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeE-----------------E--e-ccCCccEeeeECCCCcEEE
Confidence            234555666654334444444556666655543321110                 0  0 1112488899999999988


Q ss_pred             EEeC-CCeEEEEEcCCCCcc
Q 004685          296 LSYS-GEHVYLMDVNHAGGR  314 (737)
Q Consensus       296 ~g~~-dg~v~iwd~~~~~~~  314 (737)
                      ++.. +..+.+++..+++..
T Consensus       223 ~a~~~~~~~~~~~~~~~~~~  242 (426)
T d1hzua2         223 TAANNSNKVAVIDSKDRRLS  242 (426)
T ss_dssp             EEETTCSEEEEEETTTTEEE
T ss_pred             eeeecccceeeeecccccEE
Confidence            8876 678999999986543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.7e-24  Score=219.21  Aligned_cols=147  Identities=16%  Similarity=0.141  Sum_probs=110.7

Q ss_pred             CeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCc
Q 004685           82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH  161 (737)
Q Consensus        82 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  161 (737)
                      .+.++++ .+|..+|++++|+|      |++|+.||+|++||+..               ....|...|.++.+++ + .
T Consensus         3 ~~~i~~l-~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~---------------~~~~h~~~V~~~~~~~-~-~   58 (287)
T d1pgua2           3 DEVLKTI-SGHNKGITALTVNP------LISGSYDGRIMEWSSSS---------------MHQDHSNLIVSLDNSK-A-Q   58 (287)
T ss_dssp             EEEEEEE-CCCSSCEEEEETTT------TEEEETTSCEEETTTTE---------------EECCCCSCEEEEECCS-T-T
T ss_pred             cceeEEE-CCCCCceEEEEECc------EEEEeCCCeEEEEECCC---------------CCCCCCCCEEEEEecC-C-C
Confidence            4677888 89999999999965      89999999999999863               2357999999999987 4 4


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEE
Q 004685          162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  241 (737)
Q Consensus       162 ~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~  241 (737)
                      .+++++.|++|++|++...+.                                ...+..++++++ + .++..+.++.+.
T Consensus        59 ~~~s~s~D~~v~~w~~~~~~~--------------------------------~~~~~~~~~~~~-~-~~~~~~~~~~~~  104 (287)
T d1pgua2          59 EYSSISWDDTLKVNGITKHEF--------------------------------GSQPKVASANND-G-FTAVLTNDDDLL  104 (287)
T ss_dssp             CCEEEETTTEEEETTEEEEEC--------------------------------SSCEEEEEECSS-S-EEEEEETTSEEE
T ss_pred             eEEEEeecccccccccccccc--------------------------------ccceeeeeeccC-C-ceEEEeecccce
Confidence            578999999999999875431                                134567778875 3 444455677788


Q ss_pred             EEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCC-eEEEEEcCC
Q 004685          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-HVYLMDVNH  310 (737)
Q Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg-~v~iwd~~~  310 (737)
                      +|+...++.+..+..                        .....+++|++..+++++.++ .|++|++..
T Consensus       105 ~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~  150 (287)
T d1pgua2         105 ILQSFTGDIIKSVRL------------------------NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSD  150 (287)
T ss_dssp             EEETTTCCEEEEEEC------------------------SSCEEEEEECSSEEEEEETTTSCEEEEETTE
T ss_pred             eeeccceeeeeeccc------------------------cceeeeeeccCcceeeeccccceeeeeeccc
Confidence            999887765433311                        122356788888999888865 799999765

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.6e-23  Score=206.91  Aligned_cols=220  Identities=16%  Similarity=0.265  Sum_probs=168.3

Q ss_pred             CCCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEE
Q 004685           21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK  100 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~  100 (737)
                      ..+.+.|++|++|+  +.+.+++++|++|.++|++|+|  ++++|++|+.|+.|++|++..+...... ..+....  ..
T Consensus        28 l~sgs~Dg~i~vWd--~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~-~~~~~~~--~~  100 (293)
T d1p22a2          28 IVSGLRDNTIKIWD--KNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAV--LH  100 (293)
T ss_dssp             EEEEESSSCEEEEE--SSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE-CCCCSCE--EE
T ss_pred             EEEEeCCCeEEEEE--CCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccc-ccccccc--cc
Confidence            45577899999999  5778899999999999999887  5789999999999999999998877766 3333332  33


Q ss_pred             EeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 004685          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (737)
Q Consensus       101 ~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~  180 (737)
                      +.+.  ...++++..++.+.+|+.......       .....+..|...+..+.+.+   ..+++++.|+.|++||+++.
T Consensus       101 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~  168 (293)
T d1p22a2         101 LRFN--NGMMVTCSKDRSIAVWDMASPTDI-------TLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTC  168 (293)
T ss_dssp             EECC--TTEEEEEETTSCEEEEECSSSSCC-------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTC
T ss_pred             cccc--ccceeecccccceeEeeccccccc-------cccccccccccccccceecc---cccccccCCCceeeecCCCC
Confidence            4444  478999999999999999864332       22455677888898888865   56779999999999999887


Q ss_pred             CCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCC
Q 004685          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (737)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~  260 (737)
                      +..                         .....+...+..+.+++   ..+++++.|+.|++||+++...+....     
T Consensus       169 ~~~-------------------------~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~-----  215 (293)
T d1p22a2         169 EFV-------------------------RTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLE-----  215 (293)
T ss_dssp             CEE-------------------------EEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEEC-----
T ss_pred             cEE-------------------------EEEcccccccccccCCC---CeEEEecCCCEEEEEecccceeeeeec-----
Confidence            632                         11223445677777764   589999999999999999876544331     


Q ss_pred             CCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                                     ++.. .+.  .+++++.+|++|+.||.|++||+..
T Consensus       216 ---------------~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         216 ---------------GHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             ---------------CCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHH
T ss_pred             ---------------ccce-eee--eccccceEEEEEcCCCEEEEEECCC
Confidence                           1221 243  4677889999999999999999876

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=3.1e-24  Score=230.58  Aligned_cols=208  Identities=10%  Similarity=-0.009  Sum_probs=144.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCce
Q 004685           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (737)
Q Consensus        62 g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~  141 (737)
                      .-++++.+.||+|.|||..+++++..+ ..+ ..+..++|+|+  |+++++++.|+.|.+||+.+.+....     ..+.
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~-~~g-~~~~~v~fSpD--G~~l~~~s~dg~v~~~d~~t~~~~~~-----~~i~  102 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVL-DTG-YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPTTV-----AEIK  102 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEE-ECS-SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCCEE-----EEEE
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEE-eCC-CCeeEEEECCC--CCEEEEEcCCCCEEEEEeeCCCceEE-----EEEe
Confidence            344688999999999999999999999 455 46999999999  89999999999999999986443210     1122


Q ss_pred             eeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEE
Q 004685          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (737)
Q Consensus       142 ~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  221 (737)
                      ....|...+.+..|+|++..++++++.++.|++||..+++...           .+. ..  .................+
T Consensus       103 ~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~-----------~~~-~~--~~~~~~~~~~~~~~~~~v  168 (432)
T d1qksa2         103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-----------IQS-TR--GMTYDEQEYHPEPRVAAI  168 (432)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-----------EEE-CC--EECTTTCCEESCCCEEEE
T ss_pred             cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccccee-----------eec-cC--CccccceeccCCCceeEE
Confidence            2334555666667778554456889999999999999876431           110 00  000000011123456778


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-C
Q 004685          222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-G  300 (737)
Q Consensus       222 ~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-d  300 (737)
                      .++|++..++++...++.|.+||..+.+.......                    ..+..+..++|+|+|+++++++. +
T Consensus       169 ~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i--------------------~~g~~~~~~~~spdg~~~~va~~~~  228 (432)
T d1qksa2         169 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--------------------SAERFLHDGGLDGSHRYFITAANAR  228 (432)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--------------------ECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred             EECCCCCEEEEEEccCCeEEEEEccCCCcceEEEE--------------------cccCccccceECCCCCEEEEecccc
Confidence            89998766677788889999999887653221100                    11124788999999999888877 5


Q ss_pred             CeEEEEEcCCCC
Q 004685          301 EHVYLMDVNHAG  312 (737)
Q Consensus       301 g~v~iwd~~~~~  312 (737)
                      +.+.++|..+.+
T Consensus       229 ~~v~v~d~~~~~  240 (432)
T d1qksa2         229 NKLVVIDTKEGK  240 (432)
T ss_dssp             TEEEEEETTTTE
T ss_pred             ceEEEeecccce
Confidence            689999988754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=1.5e-19  Score=183.04  Aligned_cols=183  Identities=16%  Similarity=0.194  Sum_probs=134.8

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCCCceee
Q 004685           65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  143 (737)
Q Consensus        65 lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  143 (737)
                      .++++.|++|.|||+.+++.+..+.  ....+..++|+|+  |++| ++++.++.|++||+.+..          .+..+
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~--~g~~p~~va~spd--G~~l~v~~~~~~~i~v~d~~t~~----------~~~~~   70 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIP--VGSNPMGAVISPD--GTKVYVANAHSNDVSIIDTATNN----------VIATV   70 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTT--SSEEEEEEGGGTEEEEEETTTTE----------EEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEE--CCCCceEEEEeCC--CCEEEEEECCCCEEEEEECCCCc----------eeeee
Confidence            4567889999999999999998883  3355789999999  6766 567789999999998632          24555


Q ss_pred             ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEE
Q 004685          144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  223 (737)
Q Consensus       144 ~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  223 (737)
                      ..+. .+..+.|++++..+++++..++.+.+|+..+++..           .           .+    .+.....++.|
T Consensus        71 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----------~~----~~~~~~~~~~~  123 (301)
T d1l0qa2          71 PAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA-----------G-----------TV----KTGKSPLGLAL  123 (301)
T ss_dssp             ECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----------E-----------EE----ECSSSEEEEEE
T ss_pred             eccc-cccccccccccccccccccccceeeecccccceee-----------e-----------ec----cccccceEEEe
Confidence            5554 46889999976667777888899999999876522           0           00    12345678999


Q ss_pred             ecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC-Ce
Q 004685          224 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-EH  302 (737)
Q Consensus       224 sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d-g~  302 (737)
                      +|++..+++++..++.+.+|+..+...+..+..                    +.  .+..++++|++.++++++.+ +.
T Consensus       124 ~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~--~~~~~~~~~~~~~~~~~~~~~~~  181 (301)
T d1l0qa2         124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV--------------------GR--SPKGIAVTPDGTKVYVANFDSMS  181 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--------------------CS--SEEEEEECTTSSEEEEEETTTTE
T ss_pred             ecCCCeeeeeeccccceeeeeccccceeeeccc--------------------CC--CceEEEeeccccceeeecccccc
Confidence            998655667777889999999988765443311                    11  37789999999999888875 55


Q ss_pred             EEEEEcCC
Q 004685          303 VYLMDVNH  310 (737)
Q Consensus       303 v~iwd~~~  310 (737)
                      +.+|+...
T Consensus       182 ~~~~~~~~  189 (301)
T d1l0qa2         182 ISVIDTVT  189 (301)
T ss_dssp             EEEEETTT
T ss_pred             cccccccc
Confidence            66665444

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=3.5e-21  Score=200.59  Aligned_cols=177  Identities=8%  Similarity=0.065  Sum_probs=136.3

Q ss_pred             ccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEEcccCccceEEEEEeeC
Q 004685           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg--~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~  104 (737)
                      .+.+.+|+.  ...+. ..+ +|...|.+++|+|||++|++++.+.  .|++||..+++.. .+ ..|...|.+++|+|+
T Consensus        23 ~g~v~v~d~--~~~~~-~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~-~~~~~~v~~~~~spd   96 (360)
T d1k32a3          23 RGQAFIQDV--SGTYV-LKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KF-EENLGNVFAMGVDRN   96 (360)
T ss_dssp             TTEEEEECT--TSSBE-EEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-EC-CCCCCSEEEEEECTT
T ss_pred             CCeEEEEEC--CCCcE-EEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Ee-eCCCceEEeeeeccc
Confidence            356788874  33333 333 6999999999999999998776553  7999999988765 44 579999999999999


Q ss_pred             CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe----------CCCcEEE
Q 004685          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS----------EDGTLRQ  174 (737)
Q Consensus       105 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s----------~Dg~I~v  174 (737)
                        +.+|++++.++.+++|++....          ....+..|...+.+++|+| ++++|+.+.          .++.+++
T Consensus        97 --g~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v  163 (360)
T d1k32a3          97 --GKFAVVANDRFEIMTVDLETGK----------PTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHV  163 (360)
T ss_dssp             --SSEEEEEETTSEEEEEETTTCC----------EEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             --ccccceeccccccccccccccc----------eeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceee
Confidence              7999999999999999998633          2566777888999999999 556776543          3446888


Q ss_pred             EEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       175 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                      ||+.+++..                          ....+...+..++|+|+ ++.|++++.++.+++||.....
T Consensus       164 ~d~~~~~~~--------------------------~~~~~~~~~~~~~~spd-g~~l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         164 YDMEGRKIF--------------------------AATTENSHDYAPAFDAD-SKNLYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             EETTTTEEE--------------------------ECSCSSSBEEEEEECTT-SCEEEEEESCCCCCEECSSSSC
T ss_pred             eccccCcee--------------------------eecccccccccccccCC-CCEEEEEeCCCceEcccccccc
Confidence            888776421                          11123456788999997 6899999999999999976543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=1e-19  Score=195.11  Aligned_cols=269  Identities=9%  Similarity=0.026  Sum_probs=166.4

Q ss_pred             CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EEc--ccCccceE
Q 004685           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SIE--TGHSANVF   97 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~--~~~--~~h~~~V~   97 (737)
                      .....+++|++||  ..+.+.+.+|..|. .+..++|||||++|++++.|++|++||+.+++...  .+.  .+|...+.
T Consensus        36 V~~~~dg~v~vwD--~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          36 VTLRDAGQIALVD--GDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEETTTTEEEEEE--TTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEcCCCEEEEEE--CCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            4456789999999  66778889998875 58999999999999999999999999999887433  221  34566677


Q ss_pred             EEEEeeCCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004685           98 CTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (737)
Q Consensus        98 ~v~~sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd  176 (737)
                      +++|+|+  |+++ +++..++.+.+||.....          +......|...+..+.+.+.+....+..+.|+...++.
T Consensus       113 s~~~spD--G~~l~v~~~~~~~v~i~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~  180 (426)
T d1hzua2         113 SKFKGYE--DRYTIAGAYWPPQFAIMDGETLE----------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  180 (426)
T ss_dssp             CCSTTCT--TTEEEEEEEESSEEEEEETTTCC----------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             eeeecCC--CCEEEEeecCCCeEEEEcCCccc----------eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence            8888899  6765 556689999999998632          24445555555555555553333444555555555554


Q ss_pred             cCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccC
Q 004685          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (737)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~  256 (737)
                      ......+            .++.........+. ...+...+..+.|+|++..++++...+..+.+++..+++.+.....
T Consensus       181 ~~~~~~i------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T d1hzua2         181 VKETGKV------------LLVNYKDIDNLTVT-SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  247 (426)
T ss_dssp             ETTTTEE------------EEEECSSSSSCEEE-EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             cCCCCeE------------EEEEeccccceeeE-EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence            4332211            11111111100010 0123456789999998654555556778899999998876655432


Q ss_pred             CCCCCCCccccccccccCCCCcccceeEEEEcCCCC-EEE--EEeCCCeEEEEEcCCC-------CcceeeeecCCCCee
Q 004685          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVL--LSYSGEHVYLMDVNHA-------GGRAMRYTVGDASKI  326 (737)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~--~g~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~~  326 (737)
                      ...+                +   ......+.+.+. .+.  ....|+.+.+|+....       +....+.+++..+..
T Consensus       248 ~~~~----------------~---~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~  308 (426)
T d1hzua2         248 GKTP----------------H---PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLF  308 (426)
T ss_dssp             SSCC----------------C---CSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCC
T ss_pred             CCcc----------------c---ccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeE
Confidence            2111                1   111222222221 122  2223667777776553       344456667888888


Q ss_pred             eeeccCCCCcc
Q 004685          327 MSFTPTLNGLE  337 (737)
Q Consensus       327 ~~~~p~~~~~~  337 (737)
                      ++|+|+...++
T Consensus       309 v~~sPdg~~l~  319 (426)
T d1hzua2         309 IKTHPKSSHLY  319 (426)
T ss_dssp             EECCTTCSEEE
T ss_pred             EEcCCCCceEE
Confidence            99999866544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.82  E-value=3.1e-19  Score=184.41  Aligned_cols=191  Identities=9%  Similarity=0.011  Sum_probs=123.8

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEE-EEEECCCcEEEEecCCCCCCCCCC
Q 004685           56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDD  134 (737)
Q Consensus        56 l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~  134 (737)
                      ++|++++++|++++.|++|.|||+.+++.+.++...+...+.+++|+|+  |.++ +++..++.|.+||+.+...     
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spD--G~~l~v~~~~~~~v~~~d~~t~~~-----   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTCKN-----   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTTEE-----
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCC--CCEEEEEECCCCcEEEEeCccCee-----
Confidence            5789999999999999999999999999999884456777899999999  6765 6666899999999986432     


Q ss_pred             CCCCCceeec------cCCCceeEEEEecCCCcEEEEEe------------CCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004685          135 NAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSAS------------EDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (737)
Q Consensus       135 ~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~s~s------------~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~  196 (737)
                           +..+.      .+...+..++|+|+ ++++++++            .++.+.+||..+++......         
T Consensus        75 -----~~~~~~~~~~~~~~~~~~~v~~s~D-G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------  139 (346)
T d1jmxb_          75 -----TFHANLSSVPGEVGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR---------  139 (346)
T ss_dssp             -----EEEEESCCSTTEEEECSSCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE---------
T ss_pred             -----eeeecccccccccCCceEEEEEecC-CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE---------
Confidence                 12221      12234567999995 46565554            46678888877665321000         


Q ss_pred             EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004685          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (737)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (737)
                                 ..   .....+..+.++++ +.+++.   ++.+.+|++.+++.+..+...                   
T Consensus       140 -----------~~---~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------------------  182 (346)
T d1jmxb_         140 -----------TF---PMPRQVYLMRAADD-GSLYVA---GPDIYKMDVKTGKYTVALPLR-------------------  182 (346)
T ss_dssp             -----------EE---ECCSSCCCEEECTT-SCEEEE---SSSEEEECTTTCCEEEEECST-------------------
T ss_pred             -----------ee---eccCceEEEEecCC-CEEEEe---CCcceEEEccCCCEEEEEecC-------------------
Confidence                       00   01123344555554 444443   256889999877655443211                   


Q ss_pred             CcccceeEEEEcCCCCEEEEEeC-CCeEEEEEc
Q 004685          277 RSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDV  308 (737)
Q Consensus       277 ~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~  308 (737)
                       .  ....+.++|++..++.... ++.+.+++.
T Consensus       183 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (346)
T d1jmxb_         183 -N--WNRKGYSAPDVLYFWPHQSPRHEFSMLYT  212 (346)
T ss_dssp             -T--CCCTTBCCCBCCCCCCCCCTTCEEEEEEE
T ss_pred             -C--CccceEEeccccEEEEEecCCCceEeeee
Confidence             0  2344567888877655544 455665543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=7.4e-19  Score=180.75  Aligned_cols=150  Identities=7%  Similarity=-0.033  Sum_probs=104.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEccc-CccceEEEEEeeCCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCCCc
Q 004685           63 SLLISGSDDTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (737)
Q Consensus        63 ~~lasgs~dg~V~vwd~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~  140 (737)
                      ++|++++.|++|.|||+.+++.+..+... +...+.+++|+|+  |+++ ++++.++.|.+||+.+++.          +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spD--g~~l~v~~~~~~~v~v~D~~t~~~----------~   69 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGET----------L   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTCCE----------E
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCC--CCEEEEEECCCCeEEEEECCCCcE----------E
Confidence            58999999999999999999999888322 3456789999999  6776 5677899999999986432          3


Q ss_pred             eeeccC-----CCceeEEEEecCCCcEEEEEeC------------CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685          141 ALYQCH-----TRRVKKLAVEVGNPHVVWSASE------------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (737)
Q Consensus       141 ~~~~~h-----~~~v~~l~~~p~~~~~l~s~s~------------Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (737)
                      ..+..+     ...+..++|+| ++.+++++..            +..+.+||..+....                    
T Consensus        70 ~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--------------------  128 (337)
T d1pbyb_          70 GRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--------------------  128 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--------------------
T ss_pred             EEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEE--------------------
Confidence            333322     23456789999 5566666653            456677776665421                    


Q ss_pred             ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004685          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (737)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~  254 (737)
                         ....   ....+.+++|+|+ +.++++++.  .+.+||..+++....+
T Consensus       129 ---~~~~---~~~~~~~~~~s~d-g~~l~~~~~--~~~~~d~~~~~~~~~~  170 (337)
T d1pbyb_         129 ---KAFE---APRQITMLAWARD-GSKLYGLGR--DLHVMDPEAGTLVEDK  170 (337)
T ss_dssp             ---EEEE---CCSSCCCEEECTT-SSCEEEESS--SEEEEETTTTEEEEEE
T ss_pred             ---Eecc---ccCCceEEEEcCC-CCEEEEEcC--CcceeeeecCcEEEEe
Confidence               1111   1234677899997 577777754  4788999887655443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.80  E-value=1.4e-17  Score=168.14  Aligned_cols=222  Identities=8%  Similarity=0.111  Sum_probs=158.9

Q ss_pred             CCcccccccccccccccccceeecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEe
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~s  102 (737)
                      ...+++|.+||  ..+.+.++++... ..+..++|+|||++| ++++.++.|++||+.+++.+..+ ..+. .+..++|+
T Consensus         8 ~~~~~~v~v~D--~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~-~~~~-~~~~~~~~   82 (301)
T d1l0qa2           8 NSESDNISVID--VTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAGS-SPQGVAVS   82 (301)
T ss_dssp             ETTTTEEEEEE--TTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECSS-SEEEEEEC
T ss_pred             ECCCCEEEEEE--CCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee-eccc-cccccccc
Confidence            44577899999  5666777888644 457899999999977 56778899999999999999888 4554 56899999


Q ss_pred             eCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 004685          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (737)
Q Consensus       103 p~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~  182 (737)
                      +++ ...++++..++.+.+|+.....          ....+. +...+.++.|+|++..+++++..++.+.+|+..+...
T Consensus        83 ~~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  150 (301)
T d1l0qa2          83 PDG-KQVYVTNMASSTLSVIDTTSNT----------VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV  150 (301)
T ss_dssp             TTS-SEEEEEETTTTEEEEEETTTTE----------EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccc-ccccccccccceeeecccccce----------eeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccce
Confidence            984 3355666678899999998632          134443 4556788999997666677788889999999988752


Q ss_pred             CCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCcccccCCCCCC
Q 004685          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPP  261 (737)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~  261 (737)
                      .              .        .+    .....+..+.++|++ ..+++++ .++.+.+|+...........      
T Consensus       151 ~--------------~--------~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  197 (301)
T d1l0qa2         151 I--------------N--------TV----SVGRSPKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVIDTVK------  197 (301)
T ss_dssp             E--------------E--------EE----ECCSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEEEEEE------
T ss_pred             e--------------e--------ec----ccCCCceEEEeeccc-cceeeecccccccccccccceeeeeccc------
Confidence            2              0        00    112346788999985 4555554 55677788776554322211      


Q ss_pred             CCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC---CCeEEEEEcCCC
Q 004685          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHA  311 (737)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~---dg~v~iwd~~~~  311 (737)
                                      ....+..++|++++..++++..   ++.|++||+.++
T Consensus       198 ----------------~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         198 ----------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             ----------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             ----------------ccCCcceeeccccccccccccccceeeeeeeeecCCC
Confidence                            1113678999999999877754   468999998874

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.79  E-value=9.1e-17  Score=168.05  Aligned_cols=206  Identities=12%  Similarity=-0.006  Sum_probs=134.5

Q ss_pred             cccCCceEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE-------
Q 004685           47 EGHQGCVNAISWNSKGSLLISG-----SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-------  114 (737)
Q Consensus        47 ~~H~~~V~~l~~s~~g~~lasg-----s~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs-------  114 (737)
                      ..+.+++.+++++|||+.++..     +..+.|.+||..+++.+..+ ..+..+  .++|+|+  |.+|+++.       
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-~~~~~~--~~a~SpD--G~~l~va~~~~~~~~   91 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-NGGFLP--NPVAAHS--GSEFALASTSFSRIA   91 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE-eCCCCc--cEEEcCC--CCEEEEEeecCCccc
Confidence            4688899999999999988764     23467999999999999888 455433  7999999  78887764       


Q ss_pred             ---CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCc-------eeEEEEecCCCcEEEE-EeCCCcEEEEEcCCCCCC
Q 004685          115 ---GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR-------VKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSC  183 (737)
Q Consensus       115 ---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~-------v~~l~~~p~~~~~l~s-~s~Dg~I~vwdl~~~~~~  183 (737)
                         .++.|.+||....+.          ...+..+...       ...+.|++++..+++. ...++.+.+|+....+..
T Consensus        92 ~~~~~~~v~v~D~~t~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~  161 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLP----------IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD  161 (373)
T ss_pred             ccccceEEEEEECCCCcE----------EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE
Confidence               467899999987432          2333333322       2456777744333222 233556777776654311


Q ss_pred             CCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCC
Q 004685          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (737)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (737)
                                                   .+.....++.|+|++...+++.+.|+.+.+||...............    
T Consensus       162 -----------------------------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~----  208 (373)
T d2madh_         162 -----------------------------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAML----  208 (373)
T ss_pred             -----------------------------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecc----
Confidence                                         11223467889998766778999999999999987664433211100    


Q ss_pred             ccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                                ..+... ....+.+++++. ++..+.++.+.+|+.....
T Consensus       209 ----------~~~~~~-~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         209 ----------TAAQNL-LTQPAQANKSGR-IVWPVYSGKILQADISAAG  245 (373)
T ss_pred             ----------ccCccc-eeeeEEECCCce-EEEecCCceEEEEEcCCCe
Confidence                      011111 244566777765 4556678899999988743

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=4.6e-18  Score=181.88  Aligned_cols=268  Identities=9%  Similarity=0.006  Sum_probs=172.3

Q ss_pred             CCCCcccccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEEc--ccCccceE
Q 004685           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE--TGHSANVF   97 (737)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~--~~~~~--~~h~~~V~   97 (737)
                      ...+.++++.+||  ..+.+.+.++..|. .+..++|||||++|++++.|+.|++||+.+++.  ...+.  ..|...+.
T Consensus        36 v~~~d~g~v~v~D--~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          36 VTLRDAGQIALID--GSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEETTTTEEEEEE--TTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEcCCCEEEEEE--CCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            4455678999999  77888899998774 699999999999999999999999999987753  33332  24556666


Q ss_pred             EEEEeeCCCCCEE-EEEECCCcEEEEecCCCCCCCCCCC-CCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004685           98 CTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDN-AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (737)
Q Consensus        98 ~v~~sp~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw  175 (737)
                      +..|+|+  |++| +++..++.|++||....+....... ..........+......+.++|++..++++...++.|.+|
T Consensus       113 s~~~SpD--G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         113 SKMEGWE--DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  190 (432)
T ss_dssp             CCSTTCT--TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             ecccCCC--CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence            7778888  6764 7888899999999986432110000 0000001112455677889999776677788888999999


Q ss_pred             EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (737)
Q Consensus       176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~  255 (737)
                      |....+..            .+..+.            ....+..++|+|++..+++++..++.+.++|..+.+.+..+.
T Consensus       191 d~~~~~~~------------~~~~i~------------~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         191 DYTDLNNL------------KTTEIS------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             ETTCSSEE------------EEEEEE------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EccCCCcc------------eEEEEc------------ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            98776421            111111            124568899999853344455566789999998876554443


Q ss_pred             CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCC
Q 004685          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (737)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~  334 (737)
                      .....               .+.. ......+...+....+... ++.|.+|+......    ..+...+....+.|...
T Consensus       247 ~g~~~---------------~~~~-~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~----~~~~~~v~~~~~~~~g~  306 (432)
T d1qksa2         247 TGGQT---------------PHPG-RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH----PDNAWKILDSFPALGGG  306 (432)
T ss_dssp             CSSSS---------------BCCT-TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----TTTBTSEEEEEECSCSC
T ss_pred             cCccc---------------cccC-cccceecCCCCceecccccCCceEEecccccccc----cccccEEEEEEEcCCCC
Confidence            21110               0111 2334455555555554443 88999999877432    12233444556666555


Q ss_pred             CccC
Q 004685          335 GLEL  338 (737)
Q Consensus       335 ~~~~  338 (737)
                      .+..
T Consensus       307 ~~~~  310 (432)
T d1qksa2         307 SLFI  310 (432)
T ss_dssp             CCCE
T ss_pred             eEEE
Confidence            4443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=3.4e-16  Score=160.40  Aligned_cols=251  Identities=11%  Similarity=0.087  Sum_probs=168.8

Q ss_pred             CCcccccccccccccccccceeecc--cCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccC-----ccc
Q 004685           24 PDVNHSLQMHSSLVRRLSQERELEG--HQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH-----SAN   95 (737)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~--H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h-----~~~   95 (737)
                      ...+++|.+||  .++.+.++++..  +...+.+++|+|||++| ++++.++.|.+||+.+++.+..+ ..+     ...
T Consensus         7 ~~~d~~v~v~D--~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~~~~   83 (337)
T d1pbyb_           7 PARPDKLVVID--TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI-DLSTPEERVKS   83 (337)
T ss_dssp             EETTTEEEEEE--TTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE-ECCBTTEEEEC
T ss_pred             EcCCCEEEEEE--CCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEE-ecCCCcccccc
Confidence            44578999999  566677777764  44568899999999987 56778999999999999988877 333     234


Q ss_pred             eEEEEEeeCCCCCEEEEEE------------CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685           96 VFCTKFVPETSDELVVSGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (737)
Q Consensus        96 V~~v~~sp~~~~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  163 (737)
                      +..++|+|+  +.+++++.            .+..+.+||.....          ....+. +...+..++|+| ++.++
T Consensus        84 ~~~v~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~~~-~~~~~~~~~~s~-dg~~l  149 (337)
T d1pbyb_          84 LFGAALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETLS----------RRKAFE-APRQITMLAWAR-DGSKL  149 (337)
T ss_dssp             TTCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE----------EEEEEE-CCSSCCCEEECT-TSSCE
T ss_pred             eeeEEEcCC--CcEEEEeecCCcceeeeccccccceeeccccCCe----------EEEecc-ccCCceEEEEcC-CCCEE
Confidence            568999999  68887765            45778888887632          133333 456688899999 55677


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCC------------------C-CCCCc-----------------------cceEEEecc
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPA------------------G-SSHQE-----------------------CRNILLDLR  201 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~------------------~-~~~~~-----------------------~~~~~~~~~  201 (737)
                      ++++.  .+.+||..+++.....                  . .....                       .....++..
T Consensus       150 ~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (337)
T d1pbyb_         150 YGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE  227 (337)
T ss_dssp             EEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred             EEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC
Confidence            67764  4788998765422000                  0 00000                       011122222


Q ss_pred             CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc
Q 004685          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (737)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (737)
                      .+...... ...+...+..+.++|+ +.+++++  ++.|++||+.+++.+..+..                      ...
T Consensus       228 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~--~~~i~v~d~~~~~~~~~~~~----------------------~~~  281 (337)
T d1pbyb_         228 TGEMAMRE-VRIMDVFYFSTAVNPA-KTRAFGA--YNVLESFDLEKNASIKRVPL----------------------PHS  281 (337)
T ss_dssp             TCCEEEEE-EEECSSCEEEEEECTT-SSEEEEE--ESEEEEEETTTTEEEEEEEC----------------------SSC
T ss_pred             CCcEEEEE-ecCCCcceEEEEeccc-ceEEEEc--cccEEEEECCCCcEEEEEcC----------------------CCC
Confidence            22221111 1123445667778886 4566555  58999999998876554421                      114


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeee
Q 004685          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT  319 (737)
Q Consensus       282 i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~  319 (737)
                      +.+++|+|||++|++++.++.|++||..+++....+..
T Consensus       282 ~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             CCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            78899999999999999999999999999876555443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=1.3e-15  Score=157.88  Aligned_cols=201  Identities=8%  Similarity=-0.005  Sum_probs=119.0

Q ss_pred             ceEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEE----------ECC
Q 004685           52 CVNAISWNSKGSLLISGS-----DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG----------AGD  116 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs-----~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg----------s~d  116 (737)
                      ++.-.+.+||++.++...     .+..|.+||..+++.+.++ ..+.  ...++|+|+  +++|++.          ..|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~-~~g~--~~~~a~SpD--g~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGGF--LPNPVVADD--GSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-EECS--SCEEEECTT--SSCEEEEEEEEEETTEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE-ECCC--CCceEEcCC--CCEEEEEeCCCccccccCCC
Confidence            344446689999887653     4567999999999999888 4443  347999999  6766543          457


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCCceeecc-------CCCceeEEEEecCCCcEEEEE--eCCCcEEEEEcCCCCCCCCCC
Q 004685          117 AEVRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQGSSCPPAG  187 (737)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~--s~Dg~I~vwdl~~~~~~~~~~  187 (737)
                      +.|++||......          ...+..       .......++|+|++ ..++.+  +.+..+.+|+..+++...   
T Consensus        78 ~~v~v~D~~t~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~~~~~~~~~~~~~~~---  143 (355)
T d2bbkh_          78 DYVEVFDPVTLLP----------TADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKR---  143 (355)
T ss_dssp             EEEEEECTTTCCE----------EEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEE---
T ss_pred             CEEEEEECCCCCE----------EEEEecCCcceeecCCCCceEEEecCC-CeeEEecCCCCceeeeeecCCCcEee---
Confidence            8999999986432          222211       12234568999955 555444  456789999998875320   


Q ss_pred             CCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccc
Q 004685          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (737)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  267 (737)
                                 .+.........    .......+.+++++..+++....++.+.+++.......                
T Consensus       144 -----------~~~~~~~~~~~----~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~----------------  192 (355)
T d2bbkh_         144 -----------MLDVPDCYHIF----PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE----------------  192 (355)
T ss_dssp             -----------EEECCSEEEEE----EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT----------------
T ss_pred             -----------EEecCCcceEe----ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce----------------
Confidence                       00000000000    00112234445543222233333344444444332211                


Q ss_pred             ccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 004685          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (737)
Q Consensus       268 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~  312 (737)
                               +. ..+....+.+++..++.++.++.+++|++..+.
T Consensus       193 ---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  227 (355)
T d2bbkh_         193 ---------DE-FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD  227 (355)
T ss_dssp             ---------TS-CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred             ---------ec-ceeeeccccCCCCeEEEecCCCeEEEEecCCCc
Confidence                     11 135556788888999999999999999998753

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=9e-15  Score=149.60  Aligned_cols=196  Identities=14%  Similarity=0.170  Sum_probs=125.5

Q ss_pred             EEEEEeCCCcEEEEECCCCeE---EEEEcccCccceEEEEEeeCCCCCEEEEE-ECCCcEEEEecCCCCCCCCCCCCCCC
Q 004685           64 LLISGSDDTHINVWSYSSRKL---LHSIETGHSANVFCTKFVPETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITP  139 (737)
Q Consensus        64 ~lasgs~dg~V~vwd~~~~~~---~~~~~~~h~~~V~~v~~sp~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~  139 (737)
                      .+++++.|++|+||++.....   +..+  .|...+.+|+|+|+  |++|+++ ..|+.|.+|++.......       .
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~--~~~~~v~~la~spD--G~~L~v~~~~d~~i~~~~i~~~~~~~-------~   74 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGAL-------T   74 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCE-------E
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE--cCCCCEeEEEEeCC--CCEEEEEECCCCeEEEEEEeCCCCcE-------E
Confidence            457888999999999875432   3333  57789999999999  7877555 458999999998643221       0


Q ss_pred             ceeeccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccce
Q 004685          140 SALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL  218 (737)
Q Consensus       140 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  218 (737)
                      ......+...+..++|+|+ +++|++++ .++.|.+|+.......                       .......+...+
T Consensus        75 ~~~~~~~~~~p~~l~~spD-g~~l~v~~~~~~~v~~~~~~~~~~~-----------------------~~~~~~~~~~~~  130 (333)
T d1ri6a_          75 FAAESALPGSLTHISTDHQ-GQFVFVGSYNAGNVSVTRLEDGLPV-----------------------GVVDVVEGLDGC  130 (333)
T ss_dssp             EEEEEECSSCCSEEEECTT-SSEEEEEETTTTEEEEEEEETTEEE-----------------------EEEEEECCCTTB
T ss_pred             EeeecccCCCceEEEEcCC-CCEEeecccCCCceeeeccccccce-----------------------ecccccCCCccc
Confidence            1222234556788999995 56666665 5778999987765421                       011111233456


Q ss_pred             EEEEEecCCCcEEEEE-eCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEE
Q 004685          219 KSCDISSTRPHLLLVG-GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  297 (737)
Q Consensus       219 ~~i~~sp~~~~~l~t~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g  297 (737)
                      .++.|+|++ +.++++ ..+..|.+|+............            .....   ..+.....++|++++.+++..
T Consensus       131 ~~v~~s~d~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------~~~~~---~~g~~p~~i~~~~~~~~~~~~  194 (333)
T d1ri6a_         131 HSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDP------------AEVTT---VEGAGPRHMVFHPNEQYAYCV  194 (333)
T ss_dssp             CCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEE------------EEEEC---STTCCEEEEEECTTSSEEEEE
T ss_pred             eEEEeeecc-eeeeccccccceeeEEEeccCCcceeeec------------eeeee---ecCCCccEEEEeccceeEEee
Confidence            778999985 555554 4567899999876543221100            00000   111236789999999988777


Q ss_pred             eC-CCeEEEEEcCC
Q 004685          298 YS-GEHVYLMDVNH  310 (737)
Q Consensus       298 ~~-dg~v~iwd~~~  310 (737)
                      .. .+...+|+...
T Consensus       195 ~~~~~~~~v~~~~~  208 (333)
T d1ri6a_         195 NELNSSVDVWELKD  208 (333)
T ss_dssp             ETTTTEEEEEESSC
T ss_pred             ccccCceEEEeecc
Confidence            65 56778887655

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.1e-13  Score=141.25  Aligned_cols=249  Identities=7%  Similarity=0.021  Sum_probs=153.9

Q ss_pred             CCCCCcccccccccccccc-cccceeecccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEE--cccCccce
Q 004685           21 DTRPDVNHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNSKGSLLIS-GSDDTHINVWSYSSRKLLHSI--ETGHSANV   96 (737)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~H~~~V~~l~~s~~g~~las-gs~dg~V~vwd~~~~~~~~~~--~~~h~~~V   96 (737)
                      ....+.+++|++|+..... ++.+.++ .|.+.|.+|+|+|||++|++ +..|+.|++|++........+  ...+...+
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            3445678899999843322 2333333 58889999999999998855 456899999999765422221  12345567


Q ss_pred             EEEEEeeCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004685           97 FCTKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (737)
Q Consensus        97 ~~v~~sp~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vw  175 (737)
                      .+++|+|+  |++|++++. ++.|.+|+.......        .......+...+.++.++|++...++....+..|.+|
T Consensus        86 ~~l~~spD--g~~l~v~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~  155 (333)
T d1ri6a_          86 THISTDHQ--GQFVFVGSYNAGNVSVTRLEDGLPV--------GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLF  155 (333)
T ss_dssp             SEEEECTT--SSEEEEEETTTTEEEEEEEETTEEE--------EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred             eEEEEcCC--CCEEeecccCCCceeeeccccccce--------ecccccCCCccceEEEeeecceeeeccccccceeeEE
Confidence            88999999  788888775 678999987753221        1233445667788999999554444444456779999


Q ss_pred             EcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccccc
Q 004685          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (737)
Q Consensus       176 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~  255 (737)
                      +.......          .....       ...  ..........++|++++...+.+....+...+|+...........
T Consensus       156 ~~~~~~~~----------~~~~~-------~~~--~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  216 (333)
T d1ri6a_         156 TVSDDGHL----------VAQDP-------AEV--TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV  216 (333)
T ss_dssp             EECTTSCE----------EEEEE-------EEE--ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred             EeccCCcc----------eeeec-------eee--eeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeee
Confidence            98765421          00000       000  011223457899999865455555667788888876433211100


Q ss_pred             CCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Q 004685          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (737)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~  310 (737)
                               ...  ...............+++++++++++.+.. ++.+.+|++..
T Consensus       217 ---------~~~--~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~  261 (333)
T d1ri6a_         217 ---------QTL--DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  261 (333)
T ss_dssp             ---------EEE--ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             ---------eee--eeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcC
Confidence                     000  000000111124677899999998777765 67999998876

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.58  E-value=3e-13  Score=140.76  Aligned_cols=261  Identities=10%  Similarity=0.025  Sum_probs=167.5

Q ss_pred             cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEcccCccce-
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGHSANV-   96 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~h~~~V-   96 (737)
                      ..+.++|  ..+.+.+.++.++..+  .++|+|||++|++++          .++.|.+||..+++.+..+ ..+.... 
T Consensus        47 ~~v~v~D--~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~  121 (373)
T d2madh_          47 IQQWVLD--AGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADI-ELPDAPRF  121 (373)
T ss_pred             ceEEEEE--CCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEE-ecCCccee
Confidence            3455665  5677888888877654  799999999998874          4678999999999988877 4444333 


Q ss_pred             ------EEEEEeeCCCCCEEEEE--ECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeC
Q 004685           97 ------FCTKFVPETSDELVVSG--AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE  168 (737)
Q Consensus        97 ------~~v~~sp~~~~~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  168 (737)
                            ..+.|+++  +..++..  ..++.+.+|+....              ....+.....++.++|++...+++.+.
T Consensus       122 ~~~~~~~~~~~s~d--g~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~s~~g~~~~v~~~~  185 (373)
T d2madh_         122 DVGPYSWMNANTPN--NADLLFFQFAAGPAVGLVVQGGS--------------SDDQLLSSPTCYHIHPGAPSTFYLLCA  185 (373)
T ss_pred             EeccCCCcEEEEeC--CCcEEEEEEcCCCceEEeeccCC--------------eEEEEeccceeEEEecCCCcEEEEEcC
Confidence                  45778888  4544333  34567888887642              122344556788999977778889999


Q ss_pred             CCcEEEEEcCCCCCCCCCCC---------------CC---------CccceEEEeccCCceeeccCCCCC----------
Q 004685          169 DGTLRQHDFRQGSSCPPAGS---------------SH---------QECRNILLDLRCGAKRSLADPPKQ----------  214 (737)
Q Consensus       169 Dg~I~vwdl~~~~~~~~~~~---------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~----------  214 (737)
                      |+.+.+|+............               ..         ......+++...+....+......          
T Consensus       186 dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (373)
T d2madh_         186 QGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR  265 (373)
T ss_pred             CCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeec
Confidence            99999999877654311000               00         011111122222211111111111          


Q ss_pred             ccceEEEEEecCC---------CcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEE
Q 004685          215 TLSLKSCDISSTR---------PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (737)
Q Consensus       215 ~~~v~~i~~sp~~---------~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  285 (737)
                      ......++++++.         +..+++...++.+.+||..+++.+..+..                      ...+..+
T Consensus       266 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~----------------------~~~~~~~  323 (373)
T d2madh_         266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL----------------------GHDVDAI  323 (373)
T ss_pred             cCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC----------------------CCCeeEE
Confidence            1112234444432         23445566678899999988876554321                      1148889


Q ss_pred             EEcCCCCE--EEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeecc
Q 004685          286 TFSPNGEE--VLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (737)
Q Consensus       286 ~~sp~g~~--l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p  331 (737)
                      +|+|||+.  +++++.|+.|++||+.+++........+..+..+++.+
T Consensus       324 a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         324 SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             EECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            99999985  45678899999999999988777777888887777654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.56  E-value=1.4e-13  Score=141.13  Aligned_cols=255  Identities=10%  Similarity=0.052  Sum_probs=163.1

Q ss_pred             CCCcccccccccccccccccceeec-ccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccC-----ccc
Q 004685           23 RPDVNHSLQMHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH-----SAN   95 (737)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h-----~~~   95 (737)
                      ..+.+++|.+||  +.+.+++++++ .|...+.+++|+|||++| +++..++.|.+||+.+++.+..+....     ...
T Consensus        13 ~~~~~~~v~v~D--~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~   90 (346)
T d1jmxb_          13 VTNYPNNLHVVD--VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS   90 (346)
T ss_dssp             EEETTTEEEEEE--TTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEEC
T ss_pred             EEcCCCEEEEEE--CCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCc
Confidence            355667899999  56678888887 466778999999999976 566688999999999999887763221     234


Q ss_pred             eEEEEEeeCCCCCEEEEEE------------CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEE
Q 004685           96 VFCTKFVPETSDELVVSGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (737)
Q Consensus        96 V~~v~~sp~~~~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  163 (737)
                      +..++|+|+  |.++++++            .++.+.+|+........       .+... .....+..+.+++ ++.++
T Consensus        91 ~~~v~~s~D--G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~-~~~~~  159 (346)
T d1jmxb_          91 MYSFAISPD--GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-------PVRTF-PMPRQVYLMRAAD-DGSLY  159 (346)
T ss_dssp             SSCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-------CSEEE-ECCSSCCCEEECT-TSCEE
T ss_pred             eEEEEEecC--CCEEEEEecCCcceeeeeccCcceEEEEecccceeee-------EEEee-eccCceEEEEecC-CCEEE
Confidence            668999999  67776654            47788999887533211       11111 1234455566665 54555


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCC-------------------CCCCcc-------------------------ceEEEe
Q 004685          164 WSASEDGTLRQHDFRQGSSCPPAG-------------------SSHQEC-------------------------RNILLD  199 (737)
Q Consensus       164 ~s~s~Dg~I~vwdl~~~~~~~~~~-------------------~~~~~~-------------------------~~~~~~  199 (737)
                      ++ +  ..+.+|++.+++......                   ......                         ....++
T Consensus       160 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
T d1jmxb_         160 VA-G--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  236 (346)
T ss_dssp             EE-S--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             Ee-C--CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence            43 2  458888887655321000                   000000                         011122


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                      ...+..... ....+...+..+.+++++. .++... ++.|++||..+++.+..+.                   .+   
T Consensus       237 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~v~v~d~~~~~~~~~~~-------------------~~---  291 (346)
T d1jmxb_         237 LKTGKTHTQ-EFADLTELYFTGLRSPKDP-NQIYGV-LNRLAKYDLKQRKLIKAAN-------------------LD---  291 (346)
T ss_dssp             TTTCCEEEE-EEEECSSCEEEEEECSSCT-TEEEEE-ESEEEEEETTTTEEEEEEE-------------------CS---
T ss_pred             CCCCceEEE-EeecccceeEEEEEeCCCC-EEEEec-CCeEEEEECCCCcEEEEEc-------------------CC---
Confidence            222221111 1122445667788888754 444444 4679999999876554432                   11   


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeee
Q 004685          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY  318 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~  318 (737)
                      ..+.+++|+|||++|++++.|+.|++||+.+++......
T Consensus       292 ~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         292 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            148899999999999999999999999999977554444

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=7.7e-13  Score=136.38  Aligned_cols=183  Identities=10%  Similarity=0.020  Sum_probs=109.1

Q ss_pred             cccccccccccccccccceeecccCCceEEEEEcCCCCEEEEE----------eCCCcEEEEECCCCeEEEEEcccCc--
Q 004685           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISG----------SDDTHINVWSYSSRKLLHSIETGHS--   93 (737)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasg----------s~dg~V~vwd~~~~~~~~~~~~~h~--   93 (737)
                      ...++.+||  ..+.+++.++..+..+  .++|||||++|++.          ..|+.|++||..+++.+..+ ..+.  
T Consensus        26 ~~~~v~v~D--~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~-~~~~~~  100 (355)
T d2bbkh_          26 AVTQQFVID--GEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI-ELPDAP  100 (355)
T ss_dssp             SSEEEEEEE--TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEE-EETTCC
T ss_pred             CcCeEEEEE--CCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEE-ecCCcc
Confidence            345677777  5567778888766544  79999999988754          34789999999999988776 2222  


Q ss_pred             -----cceEEEEEeeCCCCCEEEEEE--CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEE
Q 004685           94 -----ANVFCTKFVPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA  166 (737)
Q Consensus        94 -----~~V~~v~~sp~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  166 (737)
                           .....++|+|+  +..++.+.  .+..+.+|+......          +..+..+... .  .+ +......++.
T Consensus       101 ~~~~~~~~~~~~~s~d--g~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-~--~~-~~~~~~~~~~  164 (355)
T d2bbkh_         101 RFLVGTYPWMTSLTPD--GKTLLFYQFSPAPAVGVVDLEGKAF----------KRMLDVPDCY-H--IF-PTAPDTFFMH  164 (355)
T ss_dssp             CCCBSCCGGGEEECTT--SSEEEEEECSSSCEEEEEETTTTEE----------EEEEECCSEE-E--EE-EEETTEEEEE
T ss_pred             eeecCCCCceEEEecC--CCeeEEecCCCCceeeeeecCCCcE----------eeEEecCCcc-e--Ee-ecCCcceEEE
Confidence                 23356899999  67776664  467899999876321          2333222111 1  11 1122333344


Q ss_pred             eCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004685          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (737)
Q Consensus       167 s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~  246 (737)
                      +.|+...++........            ...+...       ....+...+....+.+. +..++.++.++.+++|++.
T Consensus       165 ~~dg~~~~v~~~~~~~~------------~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~  224 (355)
T d2bbkh_         165 CRDGSLAKVAFGTEGTP------------EITHTEV-------FHPEDEFLINHPAYSQK-AGRLVWPTYTGKIHQIDLS  224 (355)
T ss_dssp             ETTSCEEEEECCSSSCC------------EEEECCC-------CSCTTSCBCSCCEEETT-TTEEEEEBTTSEEEEEECT
T ss_pred             cCCCCEEEEEecCCCeE------------EEEeccc-------ccceecceeeeccccCC-CCeEEEecCCCeEEEEecC
Confidence            45555555544333211            0010000       00112233444566765 4688888999999999998


Q ss_pred             CCC
Q 004685          247 MLP  249 (737)
Q Consensus       247 ~~~  249 (737)
                      ...
T Consensus       225 ~~~  227 (355)
T d2bbkh_         225 SGD  227 (355)
T ss_dssp             TSS
T ss_pred             CCc
Confidence            764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=2.7e-12  Score=133.40  Aligned_cols=65  Identities=9%  Similarity=0.025  Sum_probs=56.2

Q ss_pred             CcEEEEEcCcccEEEEeecCCCceEEEEecCCCC--eEEEEecCCcEEEEcCCCCCCccccCCCCCCC
Q 004685          649 GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC--VVATSGIDNTIKIWTPSASVPSIVSGGAAGPD  714 (737)
Q Consensus       649 ~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~--~l~S~~~Dg~i~lW~~~~~~~~~~~~~~~~~~  714 (737)
                      ..|.+||..+++.+..+..+ ..+.+++||||++  ++++++.|++|++||..+++.+..+....+|.
T Consensus       294 ~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~  360 (368)
T d1mdah_         294 ENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE  360 (368)
T ss_dssp             EEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred             ceEEEEECCCCcEeEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCC
Confidence            46999999999999988754 5789999999996  46788889999999999999999988776664

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.26  E-value=3.8e-10  Score=121.05  Aligned_cols=144  Identities=8%  Similarity=0.075  Sum_probs=94.4

Q ss_pred             ccccccccccccccccc---eeecccCCceEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCeEEEEEcccCcc
Q 004685           27 NHSLQMHSSLVRRLSQE---RELEGHQGCVNAISWNSKGSLLISGSD---------DTHINVWSYSSRKLLHSIETGHSA   94 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~---~~l~~H~~~V~~l~~s~~g~~lasgs~---------dg~V~vwd~~~~~~~~~~~~~h~~   94 (737)
                      ++.+.+|+....+...+   .+|..|...|.++.|||||++|+.++.         ++.+.|||+.+++.. .+ ..+..
T Consensus        35 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l-~~~~~  112 (470)
T d2bgra1          35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERIPN  112 (470)
T ss_dssp             SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCCCT
T ss_pred             CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-cc-ccCCc
Confidence            45677877444332221   245667788999999999999998753         567899999998754 45 67889


Q ss_pred             ceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeec---------cCCCceeEEEEecCCCcEEEE
Q 004685           95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ---------CHTRRVKKLAVEVGNPHVVWS  165 (737)
Q Consensus        95 ~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~~l~s  165 (737)
                      .+..+.|+|+  |+.++... ++.+.+|+...+........ ...-..+.         ...+....+.|+| +++.|+.
T Consensus       113 ~~~~~~~SPD--G~~ia~~~-~~~l~~~~~~~g~~~~~t~~-~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~  187 (470)
T d2bgra1         113 NTQWVTWSPV--GHKLAYVW-NNDIYVKIEPNLPSYRITWT-GKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAY  187 (470)
T ss_dssp             TEEEEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCSC-CBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEE
T ss_pred             cccccccccC--cceeeEee-cccceEEECCCCceeeeeec-cCCCcccccccceeeeeeecCCccccEECC-CCCccce
Confidence            9999999999  78888854 67899999876433211000 00000111         1233456788999 4566766


Q ss_pred             EeCC-CcEEEEEc
Q 004685          166 ASED-GTLRQHDF  177 (737)
Q Consensus       166 ~s~D-g~I~vwdl  177 (737)
                      ...| ..+..|.+
T Consensus       188 ~~~d~~~v~~~~~  200 (470)
T d2bgra1         188 AQFNDTEVPLIEY  200 (470)
T ss_dssp             EEEECTTCCEEEE
T ss_pred             eEecCCcCceEEE
Confidence            6655 33666654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.20  E-value=2.2e-10  Score=118.55  Aligned_cols=260  Identities=8%  Similarity=-0.003  Sum_probs=150.8

Q ss_pred             cccccccccccccccceeecccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEcccCc----
Q 004685           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGHS----   93 (737)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs----------~dg~V~vwd~~~~~~~~~~~~~h~----   93 (737)
                      +..++|-.-..+.+.+.++.++..+  .++|+|||+.|+..+          .|+.|.+||..+++.+..+ ..+.    
T Consensus        44 g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i-~~p~~~~~  120 (368)
T d1mdah_          44 GTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI-ELPDAPRF  120 (368)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE-EETTSCSC
T ss_pred             CcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeee-cCCcccee
Confidence            3334443335666777777777655  589999999888754          3678999999999988776 3222    


Q ss_pred             ---cceEEEEEeeCCCCCEEEEEE-CCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC
Q 004685           94 ---ANVFCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (737)
Q Consensus        94 ---~~V~~v~~sp~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D  169 (737)
                         .....++|+|+  |++|+.+. .++.+.+||+.....          ...+..+...    .+.|.+...++..+.|
T Consensus       121 ~~g~~p~~~a~SpD--Gk~l~va~~~~~~v~~~d~~~~~~----------~~~~~~~~~~----~~~~~~~~~~v~~~~D  184 (368)
T d1mdah_         121 SVGPRVHIIGNCAS--SACLLFFLFGSSAAAGLSVPGASD----------DQLTKSASCF----HIHPGAAATHYLGSCP  184 (368)
T ss_dssp             CBSCCTTSEEECTT--SSCEEEEECSSSCEEEEEETTTEE----------EEEEECSSCC----CCEEEETTEEECCCCT
T ss_pred             cccCCccceEECCC--CCEEEEEeCCCCeEEEEECCCCcE----------eEEeeccCcc----eEccCCCceEEEEcCC
Confidence               22346899999  67776665 579999999986321          3333322222    1222244566677788


Q ss_pred             CcEEEEEcCCCCCCCCC-----CCC----------C--------CccceEEEeccCCceeeccCCCC----------Ccc
Q 004685          170 GTLRQHDFRQGSSCPPA-----GSS----------H--------QECRNILLDLRCGAKRSLADPPK----------QTL  216 (737)
Q Consensus       170 g~I~vwdl~~~~~~~~~-----~~~----------~--------~~~~~~~~~~~~~~~~~~~~~~~----------~~~  216 (737)
                      |++.++++.........     ...          .        ......+.+...+....+.....          ...
T Consensus       185 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T d1mdah_         185 ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSA  264 (368)
T ss_dssp             TSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred             CCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCC
Confidence            88888887654432100     000          0        00111122222222211111111          011


Q ss_pred             ceEEEEEecCCCcEEEEEeCC--------CcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEc
Q 004685          217 SLKSCDISSTRPHLLLVGGSD--------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (737)
Q Consensus       217 ~v~~i~~sp~~~~~l~t~s~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s  288 (737)
                      ....++++|+...++++...+        ..|.+||..+++.+..+.                      ....+..++|+
T Consensus       265 g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~----------------------~~~~~~~~a~s  322 (368)
T d1mdah_         265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----------------------NGHDSDAIIAA  322 (368)
T ss_dssp             SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----------------------EEEEECEEEEC
T ss_pred             CceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec----------------------CCCceeEEEEC
Confidence            223577888754443433222        358899999887654432                      11248889999


Q ss_pred             CCCCE-E-EEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeee
Q 004685          289 PNGEE-V-LLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF  329 (737)
Q Consensus       289 p~g~~-l-~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  329 (737)
                      |||+. | +++..++.|++||..+++....+ ..+..++.+++
T Consensus       323 pDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i-~~g~~P~~l~~  364 (368)
T d1mdah_         323 QDGASDNYANSAGTEVLDIYDAASDQDQSSV-ELDKGPESLSV  364 (368)
T ss_dssp             CSSSCEEEEEETTTTEEEEEESSSCEEEEEC-CCCSCCCEEEC
T ss_pred             CCCCEEEEEEeCCCCeEEEEECCCCCEEEEE-ECCCCCCEEEE
Confidence            99973 4 45556899999999997654433 33443444443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.18  E-value=1.1e-11  Score=128.64  Aligned_cols=200  Identities=7%  Similarity=0.002  Sum_probs=117.3

Q ss_pred             cCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc---------
Q 004685           49 HQGCVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE---------  118 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasg-s~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~---------  118 (737)
                      |.-.+....++|||++|+.. ..++.|.++|+.+++....+...+...+..++|+|+..-.+++..+.+..         
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            55556666678999988655 57889999999999988766445678899999999841124444443321         


Q ss_pred             --------EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCCCC
Q 004685          119 --------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSS  189 (737)
Q Consensus       119 --------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~vwdl~~~~~~~~~~~~  189 (737)
                              +..+|..+.          +....+. -...+..+.|+|++ +++++.+.+ ..+..++..+....      
T Consensus       150 ~~~~~~~~~~~iD~~t~----------~v~~qI~-v~~~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~~------  211 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETM----------DVAWQVI-VDGNLDNTDADYTG-KYATSTCYNSERAVDLAGTMRNDR------  211 (441)
T ss_dssp             CGGGEEEEEEEEETTTC----------SEEEEEE-ESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSB------
T ss_pred             ccccccceEEeecCccc----------eeeEEEe-cCCCccceEECCCC-CEEEEEecCCCceEEEeccCcceE------
Confidence                    123444431          1122222 22356789999955 555555544 34444444333211      


Q ss_pred             CCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccc
Q 004685          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (737)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  269 (737)
                         ....+.                 .....+.+.|+ ++++.+ +.++.+.+++....+.+..++..            
T Consensus       212 ---d~i~v~-----------------n~p~~~~~~~d-Gk~~~v-~~~~v~vvd~~~~~~v~~~IPvg------------  257 (441)
T d1qnia2         212 ---DWVVVF-----------------NVERIAAAVKA-GNFKTI-GDSKVPVVDGRGESEFTRYIPVP------------  257 (441)
T ss_dssp             ---CEEEEE-----------------EHHHHHHHHHT-TCCBCC-TTCCCCEEECSSSCSSEEEECCB------------
T ss_pred             ---EEEEeC-----------------CccceEEEecC-CCEEEe-CCCCcEEEEcccCCceEEEEeCC------------
Confidence               000000                 01122345565 454444 34677777776654443333211            


Q ss_pred             ccccCCCCcccceeEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Q 004685          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (737)
Q Consensus       270 ~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~-dg~v~iwd~~~  310 (737)
                             .   ....+.++|||+++++++. +++|.+||+.+
T Consensus       258 -------k---sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         258 -------K---NPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             -------S---SCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             -------C---CccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence                   1   2455899999999877655 89999999886

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.85  E-value=4.5e-10  Score=116.19  Aligned_cols=65  Identities=12%  Similarity=0.078  Sum_probs=49.7

Q ss_pred             ccCCCCEE-EEecCCCcEEEEEcCcccE--------EEEeecCCCc---eEEEEecCCCCeEEEEecCCcEEEEcCC
Q 004685          635 LGQRGDYI-ASGSDDGRWFIWEKQTGRL--------IKMLLGDEAV---VNCVQCHPFDCVVATSGIDNTIKIWTPS  699 (737)
Q Consensus       635 ~s~d~~~l-~sgs~D~~i~iWd~~t~~~--------~~~l~gH~~~---V~~v~~sp~~~~l~S~~~Dg~i~lW~~~  699 (737)
                      ++|||+|+ ++|..|++|.|||+++.+.        ..++.++...   ....+|.++|..+.|.+.|.+|..|++.
T Consensus       265 vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             ECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             ECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            89999985 6789999999999986431        1233333221   3446899999999999999999999974

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.79  E-value=8.1e-07  Score=88.25  Aligned_cols=247  Identities=9%  Similarity=0.025  Sum_probs=155.5

Q ss_pred             ccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEE
Q 004685           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (737)
Q Consensus        41 ~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  120 (737)
                      +.+.++...+ .+..++++|||+++++...+++|..|+......  .+ ......+.+++|.|+  |+++++...++.+.
T Consensus        19 ~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~~-~~~~~~~~gla~~~d--G~l~v~~~~~~~~~   92 (302)
T d2p4oa1          19 KIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IH-ATVEGKVSGLAFTSN--GDLVATGWNADSIP   92 (302)
T ss_dssp             EEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EE-EECSSEEEEEEECTT--SCEEEEEECTTSCE
T ss_pred             cEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--EE-EcCCCCcceEEEcCC--CCeEEEecCCceEE
Confidence            4445554333 478899999999999999999999998664432  23 345678999999999  78999998899998


Q ss_pred             EEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      .|+........      ..+. ..........+.+.+ ++.++++.+.++.+..+|...+...           ....+.
T Consensus        93 ~~~~~~~~~~~------~~~~-~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~-----------~~~~~~  153 (302)
T d2p4oa1          93 VVSLVKSDGTV------ETLL-TLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS-----------IWLEHP  153 (302)
T ss_dssp             EEEEECTTSCE------EEEE-ECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE-----------EEEECG
T ss_pred             EEEecccccce------eecc-ccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcce-----------eEecCC
Confidence            88876533221      0011 112345678899998 5688888888888888887765311           001100


Q ss_pred             cCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccc
Q 004685          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (737)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (737)
                         . ...............+.++.  ..++++.+..+.|..++...........          .+         ....
T Consensus       154 ---~-~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~----------~~---------~~~~  208 (302)
T d2p4oa1         154 ---M-LARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPE----------IF---------VEQT  208 (302)
T ss_dssp             ---G-GSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCE----------EE---------EESC
T ss_pred             ---c-cceeeccCcccccccccccC--CceeeecCCCCeEEeccccccccccccc----------cc---------cCCC
Confidence               0 00111112233456677765  4678888888999999887543221110          00         0011


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeee--ecCCCCeeeee---ccCCCCccC
Q 004685          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY--TVGDASKIMSF---TPTLNGLEL  338 (737)
Q Consensus       281 ~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~~~~---~p~~~~~~~  338 (737)
                      ....++|+++|.++++...++.|..++... +......  ......+.++|   .|+.+.+..
T Consensus       209 ~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyv  270 (302)
T d2p4oa1         209 NIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYV  270 (302)
T ss_dssp             CCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred             CCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEecCCCCCCceEEEEcCCCCCCCEEEE
Confidence            245699999999888777889999997654 3222211  12234567888   555555543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.77  E-value=1.6e-07  Score=99.89  Aligned_cols=166  Identities=9%  Similarity=0.007  Sum_probs=107.5

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc----ccCccceEEEEEeeCCCCCEEEEEEC---------CCcEEE
Q 004685           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAG---------DAEVRL  121 (737)
Q Consensus        55 ~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~----~~h~~~V~~v~~sp~~~~~~l~sgs~---------dg~I~i  121 (737)
                      .+.|.++++++..  .|+.|.+||+.+++....+.    ..|...|.++.|+||  +++|+.++.         ++.+.|
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpD--g~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTT--SSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCC--CCEEEEEECCcceeeeccCceEEE
Confidence            4779999987764  47889999999998765441    234578999999999  788887753         567899


Q ss_pred             EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004685          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~  201 (737)
                      ||+..+.           +..+..+...+..+.|+| +++.+|.. .++.+.+|++..+............  ..+. ..
T Consensus        97 ~d~~~~~-----------~~~l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~--~~~~-g~  160 (470)
T d2bgra1          97 YDLNKRQ-----------LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKED--IIYN-GI  160 (470)
T ss_dssp             EETTTTE-----------ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTT--TEEE-SB
T ss_pred             EECCCCc-----------ccccccCCcccccccccc-CcceeeEe-ecccceEEECCCCceeeeeeccCCC--cccc-cc
Confidence            9998643           445667888999999999 45666664 5678999999887643221111110  0110 00


Q ss_pred             CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCc-EEEEEC
Q 004685          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDR  245 (737)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~-i~iwd~  245 (737)
                      ......    .........+.|+|+ ++.|+....|.. +..|++
T Consensus       161 ~d~~~~----~~~~~~~~~~~wSPD-Gk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         161 TDWVYE----EEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CCHHHH----HHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEE
T ss_pred             cceeee----eeecCCccccEECCC-CCccceeEecCCcCceEEE
Confidence            000000    001223456789998 578887765533 555544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=3.7e-06  Score=81.44  Aligned_cols=232  Identities=12%  Similarity=0.142  Sum_probs=134.0

Q ss_pred             cccceeecccCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-
Q 004685           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-  115 (737)
Q Consensus        40 ~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg---~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-  115 (737)
                      +.....+..+...+..-+|||||+.||-.....   .+.+.+...+.....  ..+........|+|+  +..++.... 
T Consensus        28 G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spd--g~~i~~~~~~  103 (269)
T d2hqsa1          28 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPD--GSKLAFALSK  103 (269)
T ss_dssp             SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE--ECCSSCEEEEEECTT--SSEEEEEECT
T ss_pred             CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEE--eeeecccccceecCC--CCeeeEeeec
Confidence            444455555677888999999999998654432   466777776655433  357788889999999  676665543 


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEE--cCCCCCCCCCCCCCCcc
Q 004685          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD--FRQGSSCPPAGSSHQEC  193 (737)
Q Consensus       116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwd--l~~~~~~~~~~~~~~~~  193 (737)
                      ++...++........         ...............+++.....+++...++...+|.  +......          
T Consensus       104 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~----------  164 (269)
T d2hqsa1         104 TGSLNLYVMDLASGQ---------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ----------  164 (269)
T ss_dssp             TSSCEEEEEETTTCC---------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE----------
T ss_pred             CCccceeeccccccc---------ceeeeeccccccccccccccccceecccccCCceEeeeecccccce----------
Confidence            444444433321111         2222233444455667775655666666666555544  4333211          


Q ss_pred             ceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCcccccccccc
Q 004685          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (737)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (737)
                                   .+   ...........|+|++..++.+....+...+|............                  
T Consensus       165 -------------~~---~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------  210 (269)
T d2hqsa1         165 -------------RI---TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL------------------  210 (269)
T ss_dssp             -------------EC---CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC------------------
T ss_pred             -------------ee---ecccccccccccccccceeEEEeecCCceeeeEeecccccceEe------------------
Confidence                         11   11234556678999864444455555555555544322111110                  


Q ss_pred             CCCCcccceeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685          274 EHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       274 ~~~~~~~~i~~v~~sp~g~~l~~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (737)
                         ..........|||||++|+-.+.   ...++++++..+. ...+......+...+|+|-
T Consensus       211 ---~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         211 ---SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             ---CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCC
T ss_pred             ---ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeEEeCCC
Confidence               00113567889999999876554   3478999998754 3344444455566788884

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=1.3e-05  Score=77.21  Aligned_cols=220  Identities=7%  Similarity=-0.028  Sum_probs=130.2

Q ss_pred             ceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCC
Q 004685           52 CVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasg-s~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~  130 (737)
                      ...+|+++++|++.++. +..+.|..++..+....... ..-......+++.++  +.++++....+.+++++-....  
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~gvav~~~--g~i~v~d~~~~~i~~~~~~~~~--   89 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGA--GTVYVTDFNNRVVTLAAGSNNQ--   89 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC-CCSCCSCCCEEECTT--CCEEEEETTTEEEEECTTCSCC--
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec-cCCccCceEEEEcCC--CCEEEeeeeeceeeeeeeccce--
Confidence            45799999999976655 45577777776544333222 222344678899998  6888777777777666543211  


Q ss_pred             CCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccC
Q 004685          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (737)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (737)
                              .+... .......++++.+ +++++++-..+..+..++.......                        .. 
T Consensus        90 --------~~~~~-~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~------------------------~~-  134 (260)
T d1rwia_          90 --------TVLPF-DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT------------------------VL-  134 (260)
T ss_dssp             --------EECCC-CSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCE------------------------EC-
T ss_pred             --------eeeee-eeeeecccccccc-cceeEeeccccccccccccccceee------------------------ee-
Confidence                    01111 2234578899998 5577766666666777765543311                        00 


Q ss_pred             CCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCC
Q 004685          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (737)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~  290 (737)
                      .........+++++++ ++++++...++.|..+|..........                    .... .....|+++++
T Consensus       135 ~~~~~~~p~~i~~~~~-g~~~v~~~~~~~i~~~d~~~~~~~~~~--------------------~~~~-~~p~gi~~d~~  192 (260)
T d1rwia_         135 PFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVLP--------------------FTDI-TAPWGIAVDEA  192 (260)
T ss_dssp             CCCSCCSCCEEEECTT-CCEEEEEGGGTEEEEECTTTCCEEECC--------------------CSSC-CSEEEEEECTT
T ss_pred             eecccCCcceeeecCC-CCEeeeccccccccccccccceeeeee--------------------cccc-CCCccceeeee
Confidence            0011234467899996 578888888889999988754321110                    0011 13678999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCC
Q 004685          291 GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (737)
Q Consensus       291 g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (737)
                      |.++++....+.|..++.............-..+..+++.++.
T Consensus       193 g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g  235 (260)
T d1rwia_         193 GTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR  235 (260)
T ss_dssp             CCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTC
T ss_pred             eeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCC
Confidence            9987777778889888766533222111122334566666643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.37  E-value=0.0002  Score=70.22  Aligned_cols=131  Identities=13%  Similarity=0.084  Sum_probs=91.3

Q ss_pred             CCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecC
Q 004685           79 YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG  158 (737)
Q Consensus        79 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  158 (737)
                      +...+.+..+.  -...+..+++.|+  |+++++...+++|..|+....            ...+......+.+++|++ 
T Consensus        15 ~~~~~v~~~~p--~~~~~e~iAv~pd--G~l~vt~~~~~~I~~i~p~g~------------~~~~~~~~~~~~gla~~~-   77 (302)
T d2p4oa1          15 LAPAKIITSFP--VNTFLENLASAPD--GTIFVTNHEVGEIVSITPDGN------------QQIHATVEGKVSGLAFTS-   77 (302)
T ss_dssp             CCCEEEEEEEC--TTCCEEEEEECTT--SCEEEEETTTTEEEEECTTCC------------EEEEEECSSEEEEEEECT-
T ss_pred             CCcccEEEECC--CCCCcCCEEECCC--CCEEEEeCCCCEEEEEeCCCC------------EEEEEcCCCCcceEEEcC-
Confidence            33445556662  2236889999999  799999999999888875521            334455667899999999 


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC
Q 004685          159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (737)
Q Consensus       159 ~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg  238 (737)
                      +++++++...++.+..|+.......          ...+.+           . ......+.+.+.++ ++++++-+.++
T Consensus        78 dG~l~v~~~~~~~~~~~~~~~~~~~----------~~~~~~-----------~-~~~~~~n~i~~~~~-g~~~v~~~~~~  134 (302)
T d2p4oa1          78 NGDLVATGWNADSIPVVSLVKSDGT----------VETLLT-----------L-PDAIFLNGITPLSD-TQYLTADSYRG  134 (302)
T ss_dssp             TSCEEEEEECTTSCEEEEEECTTSC----------EEEEEE-----------C-TTCSCEEEEEESSS-SEEEEEETTTT
T ss_pred             CCCeEEEecCCceEEEEEecccccc----------eeeccc-----------c-CCccccceeEEccC-CCEEeeccccc
Confidence            5678888888888988887654311          011111           1 11245688999997 57888888888


Q ss_pred             cEEEEECCCCC
Q 004685          239 FARLYDRRMLP  249 (737)
Q Consensus       239 ~i~iwd~~~~~  249 (737)
                      .+..+|.....
T Consensus       135 ~i~~~~~~~~~  145 (302)
T d2p4oa1         135 AIWLIDVVQPS  145 (302)
T ss_dssp             EEEEEETTTTE
T ss_pred             cceeeeccCCc
Confidence            89888887653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.28  E-value=0.00011  Score=72.77  Aligned_cols=237  Identities=9%  Similarity=0.035  Sum_probs=134.9

Q ss_pred             eeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC--CcEEE
Q 004685           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEVRL  121 (737)
Q Consensus        44 ~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d--g~I~i  121 (737)
                      ..+......+..++|.++|+++++-...+.|..|+.++++....+ .........+++.++  |.++++...+  ....+
T Consensus        33 ~~~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-~~~~~~p~gla~~~d--G~l~va~~~~~~~~~~i  109 (319)
T d2dg1a1          33 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD--GRLFVCYLGDFKSTGGI  109 (319)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT--SCEEEEECTTSSSCCEE
T ss_pred             EEeccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-eCCCCCeeEEEECCC--CCEEEEecCCCccceeE
Confidence            334434445678999999998888888999999998887666555 455667899999998  7877765432  23334


Q ss_pred             EecCCCCCCCCCCCCCCCceeeccC---CCceeEEEEecCCCcEEEEEeCC------CcEEEEEcCCCCCCCCCCCCCCc
Q 004685          122 FNLSRFSGRGLDDNAITPSALYQCH---TRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSSCPPAGSSHQE  192 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~p~~~~~l~s~s~D------g~I~vwdl~~~~~~~~~~~~~~~  192 (737)
                      +.+......         +.....+   ......+++.+ ++.+.++....      +.+..++.....           
T Consensus       110 ~~~~~~~~~---------~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-----------  168 (319)
T d2dg1a1         110 FAATENGDN---------LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRT-----------  168 (319)
T ss_dssp             EEECTTSCS---------CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCC-----------
T ss_pred             EEEcCCCce---------eeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccce-----------
Confidence            433321111         1111111   23467788888 44665553221      112222222111           


Q ss_pred             cceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccc
Q 004685          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (737)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (737)
                                  ...+.   ......+.++|+|++..++++-+..+.|+.||+..........         ...  ...
T Consensus       169 ------------~~~~~---~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~---------~~~--~~~  222 (319)
T d2dg1a1         169 ------------VTPII---QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF---------GAT--IPY  222 (319)
T ss_dssp             ------------EEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE---------EEE--EEE
T ss_pred             ------------eEEEe---eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccc---------cce--eee
Confidence                        01110   0112357899999854456666778999999986432110000         000  000


Q ss_pred             cCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeec------CCCCeeeeeccCC
Q 004685          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV------GDASKIMSFTPTL  333 (737)
Q Consensus       273 ~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~p~~  333 (737)
                      ...+..  ....++++++|++.++....+.|.+||. .++........      ......++|.|..
T Consensus       223 ~~~~~~--~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         223 YFTGHE--GPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             ECCSSS--EEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             ccCCcc--ceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCC
Confidence            000011  2457999999998888888999999995 55544333222      2234566676644

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.21  E-value=8.5e-05  Score=73.46  Aligned_cols=206  Identities=11%  Similarity=0.105  Sum_probs=125.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCc----cceEEEEEeeCCCCCEEEEEEC------------
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFVPETSDELVVSGAG------------  115 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~----~~V~~v~~sp~~~~~~l~sgs~------------  115 (737)
                      .-..|+|.+++.+|+++...+.|..++.+.+...... ....    ...+.+++.++  |.+.++-..            
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~-~~~~g~~~~~pndl~~d~~--G~lyvtd~~~~~~~~~~~~~~  148 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAK-KDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCS-BCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTT
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEe-ccccccccCCCcEEEECCC--CCEEEecCccCccccccccee
Confidence            3568999999998888887778999998765433221 1111    13578999998  787776432            


Q ss_pred             ---CCcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCC----cEEEEEeCCCcEEEEEcCCCCCCCCCCC
Q 004685          116 ---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP----HVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (737)
Q Consensus       116 ---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~----~~l~s~s~Dg~I~vwdl~~~~~~~~~~~  188 (737)
                         .|.|..++..   +.         ...+...-...+.++|+|++.    .++++-+..+.|..||+.....+     
T Consensus       149 ~~~~G~v~~~~~d---g~---------~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~-----  211 (314)
T d1pjxa_         149 QEKFGSIYCFTTD---GQ---------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI-----  211 (314)
T ss_dssp             SSSCEEEEEECTT---SC---------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-----
T ss_pred             ccCCceEEEEeec---Cc---------eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccc-----
Confidence               1223333322   11         122222233456889988542    25556677888999987654311     


Q ss_pred             CCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccc
Q 004685          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  268 (737)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  268 (737)
                         .....+..+          ..........+++.++ ++++++....+.|.+||...+..+..+..            
T Consensus       212 ---~~~~~~~~~----------~~~~~~~pdGiavD~~-GnlyVa~~~~g~I~~~dp~~g~~~~~i~~------------  265 (314)
T d1pjxa_         212 ---ENKKVWGHI----------PGTHEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIRC------------  265 (314)
T ss_dssp             ---EEEEEEEEC----------CCCSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEEC------------
T ss_pred             ---ceeeEEEEc----------cccccccceeeEEecC-CcEEEEEcCCCEEEEEeCCCCEEEEEEEC------------
Confidence               001111111          1111234568899987 57888888889999999886654433211            


Q ss_pred             cccccCCCCcccceeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCC
Q 004685          269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNHAG  312 (737)
Q Consensus       269 ~~~~~~~~~~~~~i~~v~~sp~g~~l~~g-~~dg~v~iwd~~~~~  312 (737)
                              . ....++++|.|+++.|++. +..|.|..+++....
T Consensus       266 --------p-~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         266 --------P-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             --------S-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             --------C-CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence                    0 1147899999999866555 557899999887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.19  E-value=0.00017  Score=73.02  Aligned_cols=262  Identities=11%  Similarity=0.095  Sum_probs=133.4

Q ss_pred             cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEEcccCccceEEEEEeeCCCCCE--EEEEE-CCCcEEEEec
Q 004685           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDEL--VVSGA-GDAEVRLFNL  124 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~--l~sgs-~dg~I~iwd~  124 (737)
                      ....+.-|+|+|++++|.++.. +.+..|.+.. +................++++++  +..  ++++. ..+.|..+.+
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~--~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCC--CCEEEEEEecCCCCEEEEeEc
Confidence            4456778999999999887765 5677777653 22222211112234556777887  443  32222 2455555544


Q ss_pred             CCCCCCCC-----CCCCC-CCce-eeccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004685          125 SRFSGRGL-----DDNAI-TPSA-LYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (737)
Q Consensus       125 ~~~~~~~~-----~~~~~-~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~  196 (737)
                      ........     ..... .+.. ........+.++.|+|++ ++++++. ....|.+|+.......            .
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG-~~l~v~d~g~d~v~~~~~~~~g~~------------~  181 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEV------------E  181 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCE------------E
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCC-CEEEEeeCCCCEEEEEEccCCCce------------e
Confidence            32111000     00000 0000 011123357899999955 5555554 4457888876543211            0


Q ss_pred             EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004685          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (737)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (737)
                      ..       ...... ........++|+|++..++++...++.|.+|++..............+  ......+.......
T Consensus       182 ~~-------~~~~~~-~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  251 (365)
T d1jofa_         182 LV-------GSVDAP-DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP--LIPPGIPDRDPETG  251 (365)
T ss_dssp             EE-------EEEECS-STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE--SSCTTCCCBCTTTS
T ss_pred             ec-------cceeec-CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeec--cccccccccccccc
Confidence            00       001111 123467889999986545566667899999999765432211100000  00000000000011


Q ss_pred             CcccceeEEEEcCCCCEEEEEeC-C-----CeEEEEEcCCCCcceeee------ecCCCCeeeeecc-CCCCc
Q 004685          277 RSSLHLTHVTFSPNGEEVLLSYS-G-----EHVYLMDVNHAGGRAMRY------TVGDASKIMSFTP-TLNGL  336 (737)
Q Consensus       277 ~~~~~i~~v~~sp~g~~l~~g~~-d-----g~v~iwd~~~~~~~~~~~------~~~~~~~~~~~~p-~~~~~  336 (737)
                      ........+.++|+|++|+++.. +     +.|..|++..........      ..+...+.++++| +.+-+
T Consensus       252 ~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l  324 (365)
T d1jofa_         252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM  324 (365)
T ss_dssp             SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred             cccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEE
Confidence            11223667899999999988854 2     247888877644332211      2345567788887 44433

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.19  E-value=0.00019  Score=69.52  Aligned_cols=119  Identities=11%  Similarity=0.149  Sum_probs=76.1

Q ss_pred             CCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEec
Q 004685          146 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS  225 (737)
Q Consensus       146 h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  225 (737)
                      +......+++.+ +++++++....+.|++||.....               +..        + ...+......++++.+
T Consensus       155 ~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~G~~---------------~~~--------~-g~~g~~~~P~giavD~  209 (279)
T d1q7fa_         155 HLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQY---------------LRQ--------I-GGEGITNYPIGVGINS  209 (279)
T ss_dssp             TCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCE---------------EEE--------E-SCTTTSCSEEEEEECT
T ss_pred             cccccceeeecc-ceeEEeeeccccceeeeecCCce---------------eee--------e-cccccccCCccccccc
Confidence            455667788887 55777788888889999865321               110        1 1122344568899999


Q ss_pred             CCCcEEEEEeC-CCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEE
Q 004685          226 TRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY  304 (737)
Q Consensus       226 ~~~~~l~t~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~  304 (737)
                      + ++++++-.. ++.|.+|+.. ++.+..+...                   ........|++.|+|. |+++..++.|+
T Consensus       210 ~-G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~-------------------~~~~~p~~vav~~dG~-l~V~~~n~~v~  267 (279)
T d1q7fa_         210 N-GEILIADNHNNFNLTIFTQD-GQLISALESK-------------------VKHAQCFDVALMDDGS-VVLASKDYRLY  267 (279)
T ss_dssp             T-CCEEEEECSSSCEEEEECTT-SCEEEEEEES-------------------SCCSCEEEEEEETTTE-EEEEETTTEEE
T ss_pred             C-CeEEEEECCCCcEEEEECCC-CCEEEEEeCC-------------------CCCCCEeEEEEeCCCc-EEEEeCCCeEE
Confidence            7 467666543 4579999853 4433332111                   0111367899999997 45566789999


Q ss_pred             EEEcCCC
Q 004685          305 LMDVNHA  311 (737)
Q Consensus       305 iwd~~~~  311 (737)
                      +|.....
T Consensus       268 ~fr~~~~  274 (279)
T d1q7fa_         268 IYRYVQL  274 (279)
T ss_dssp             EEECSCC
T ss_pred             EEEeeee
Confidence            9998874

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.17  E-value=0.00019  Score=70.86  Aligned_cols=248  Identities=8%  Similarity=0.064  Sum_probs=135.0

Q ss_pred             ceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCeEEEEEcc---cCccceEEEEEeeCCCCCEEEEEECCCcEEE
Q 004685           52 CVNAISWNSKGSLLISGSD-------DTHINVWSYSSRKLLHSIET---GHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~-------dg~V~vwd~~~~~~~~~~~~---~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~i  121 (737)
                      ...+++|.++|+++++...       +++|..||..++........   .....-..++|.++  ++.++++...+.|..
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~d--g~~l~vad~~~~i~~   96 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD--ANQLFVADMRLGLLV   96 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS--SSEEEEEETTTEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCC--CCEEEEEECCCeEEE
Confidence            4567889999998876433       46799999888765443311   11233578999999  687877777777888


Q ss_pred             EecCCCCCCCCCCCCCCCceeeccC-CCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEec
Q 004685          122 FNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~  200 (737)
                      .+.........       .....+. -...+.+++.+ ++.+.++-.. +....|+.....         ......++.+
T Consensus        97 ~~~~g~~~~~~-------~~~~~g~~~~~pndl~~d~-~G~lyvtd~~-~~~~~~~~~~~~---------~~~~G~v~~~  158 (314)
T d1pjxa_          97 VQTDGTFEEIA-------KKDSEGRRMQGCNDCAFDY-EGNLWITAPA-GEVAPADYTRSM---------QEKFGSIYCF  158 (314)
T ss_dssp             EETTSCEEECC-------SBCTTSCBCBCCCEEEECT-TSCEEEEECB-CBCTTSCCCBTT---------SSSCEEEEEE
T ss_pred             EeCCCcEEEEE-------eccccccccCCCcEEEECC-CCCEEEecCc-cCccccccccee---------ccCCceEEEE
Confidence            88764211100       0000111 11356788888 4566655322 111111110000         0000111111


Q ss_pred             c-CCceeeccCCCCCccceEEEEEecCCC----cEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCC
Q 004685          201 R-CGAKRSLADPPKQTLSLKSCDISSTRP----HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (737)
Q Consensus       201 ~-~~~~~~~~~~~~~~~~v~~i~~sp~~~----~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (737)
                      . .+....+.   ......+.++|+|+..    .++++-+..+.|..||+.....+...          ..+  ..+  .
T Consensus       159 ~~dg~~~~~~---~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~----------~~~--~~~--~  221 (314)
T d1pjxa_         159 TTDGQMIQVD---TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK----------KVW--GHI--P  221 (314)
T ss_dssp             CTTSCEEEEE---EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE----------EEE--EEC--C
T ss_pred             eecCceeEee---CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee----------eEE--EEc--c
Confidence            1 11111111   0112346789998632    25555677888999987643211110          000  000  0


Q ss_pred             CCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccCCCCc
Q 004685          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL  336 (737)
Q Consensus       276 ~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  336 (737)
                      +........+++.++|+..++....+.|.+||...+............+..++|.|+.+.+
T Consensus       222 ~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~l  282 (314)
T d1pjxa_         222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTI  282 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEE
T ss_pred             ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEE
Confidence            0111125679999999988888888999999988765444444445667789999876544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.15  E-value=0.00011  Score=74.42  Aligned_cols=187  Identities=9%  Similarity=0.036  Sum_probs=103.8

Q ss_pred             cceEEEEEeeCCCCCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCCCceee--ccCCCceeEEEEecCCCcEEEEEeCCC
Q 004685           94 ANVFCTKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDG  170 (737)
Q Consensus        94 ~~V~~v~~sp~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~Dg  170 (737)
                      ..+.++.|+|+  |++++++.. ...|.+|+.......       ......  .........++|+|++..+.++.-.++
T Consensus       145 ~h~h~v~~sPd--G~~l~v~d~g~d~v~~~~~~~~g~~-------~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~  215 (365)
T d1jofa_         145 TGIHGMVFDPT--ETYLYSADLTANKLWTHRKLASGEV-------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN  215 (365)
T ss_dssp             CCEEEEEECTT--SSEEEEEETTTTEEEEEEECTTSCE-------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             CcceEEEECCC--CCEEEEeeCCCCEEEEEEccCCCce-------eeccceeecCCCCceEEEEECCCCceEEEeccCCC
Confidence            34789999999  787777654 467888876642211       001111  123456789999996655556677789


Q ss_pred             cEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEe-CC-----CcEEEEE
Q 004685          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SD-----AFARLYD  244 (737)
Q Consensus       171 ~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s-~D-----g~i~iwd  244 (737)
                      +|.+|++........      .....+.....+.................+.++|++ ++|+++. .+     +.|..|+
T Consensus       216 ~V~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~  288 (365)
T d1jofa_         216 RICEYVIDPATHMPV------YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFK  288 (365)
T ss_dssp             EEEEEEECTTTCCEE------EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEE
T ss_pred             EEEEEEecCCCceEE------EEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEE
Confidence            999999976542200      000000000000000111112233456788999984 6666653 22     2377777


Q ss_pred             CCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcC-CCCEEEEEeC-CCeEEEEEcCCC
Q 004685          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYS-GEHVYLMDVNHA  311 (737)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~~g~~-dg~v~iwd~~~~  311 (737)
                      +.....+....               .+......+.....++++| +|++|+++.. ++.|.+|++...
T Consensus       289 ~~~~g~~~~~~---------------~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         289 LRDCGSIEKQL---------------FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECTTSCEEEEE---------------EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ecCCCceeeEe---------------EeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            76433221110               0000001112356689998 8998888865 789999998763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=0.00011  Score=70.43  Aligned_cols=196  Identities=6%  Similarity=0.015  Sum_probs=125.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCC
Q 004685           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~  131 (737)
                      ....|+++++++++++....+.+++++-.+...+..+  .......++++.++  ++++++-..+..+..++....... 
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~--~~~~~p~~iavd~~--g~i~v~d~~~~~~~~~~~~~~~~~-  132 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF--DGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKTQT-  132 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC--CSCCSEEEEEECTT--CCEEEEEGGGTEEEEECTTCSSCE-
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee--eeeeeccccccccc--ceeEeeccccccccccccccceee-
Confidence            4578899999998888777777777665555544333  23356789999998  688777666777777776532110 


Q ss_pred             CCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCC
Q 004685          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (737)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (737)
                              .... ........+++++ +++++++...++.|..+|.......                        . ..
T Consensus       133 --------~~~~-~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~------------------------~-~~  177 (260)
T d1rwia_         133 --------VLPF-TGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQV------------------------V-LP  177 (260)
T ss_dssp             --------ECCC-CSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEE------------------------E-CC
T ss_pred             --------eeee-cccCCcceeeecC-CCCEeeeccccccccccccccceee------------------------e-ee
Confidence                    1111 1223457899998 5578888888888999987754311                        0 00


Q ss_pred             CCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCC
Q 004685          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (737)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g  291 (737)
                      .........++++++ ++++++....+.|..++...... ..+.                   . ..-.....|+++++|
T Consensus       178 ~~~~~~p~gi~~d~~-g~l~vsd~~~~~i~~~~~~~~~~-~~~~-------------------~-~~~~~P~~i~~d~~g  235 (260)
T d1rwia_         178 FTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTS-TVLP-------------------F-TGLNTPLAVAVDSDR  235 (260)
T ss_dssp             CSSCCSEEEEEECTT-CCEEEEETTTTEEEEECTTCSCC-EECC-------------------C-CSCCCEEEEEECTTC
T ss_pred             ccccCCCccceeeee-eeeeeeecCCCEEEEEeCCCCeE-EEEc-------------------c-CCCCCeEEEEEeCCC
Confidence            112245678999987 57888887888888887653321 1100                   0 001136789999999


Q ss_pred             CEEEEEeCCCeEEEEEcC
Q 004685          292 EEVLLSYSGEHVYLMDVN  309 (737)
Q Consensus       292 ~~l~~g~~dg~v~iwd~~  309 (737)
                      ..+++-..++.|+.++..
T Consensus       236 ~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         236 TVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             CEEEEEGGGTEEEEECCC
T ss_pred             CEEEEECCCCEEEEEeCC
Confidence            877766667777766543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=0.00066  Score=64.75  Aligned_cols=206  Identities=10%  Similarity=0.071  Sum_probs=116.3

Q ss_pred             cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECC-C--cEEEEecCCCCCCCCCCCCCCCceeeccCCCc
Q 004685           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-A--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (737)
Q Consensus        73 ~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (737)
                      .|.|-|.+...... + ..+...+..-+||||  |+.||..... +  .+.+.+.....           ...+..+...
T Consensus        20 ~l~i~d~dG~~~~~-l-~~~~~~~~sP~wSPD--Gk~IAf~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~   84 (269)
T d2hqsa1          20 ELRVSDYDGYNQFV-V-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGA-----------VRQVASFPRH   84 (269)
T ss_dssp             EEEEEETTSCSCEE-E-EEESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCC-----------EEEEECCSSC
T ss_pred             EEEEEcCCCCCcEE-E-ecCCCceeeeEECCC--CCEEEEEEeeccCcceeeeecccCc-----------eeEEeeeecc
Confidence            57777876544333 3 245677889999999  7888766543 3  35555544321           3445557778


Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCc
Q 004685          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH  229 (737)
Q Consensus       150 v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~  229 (737)
                      .....|+|++..+++....++...++........                        ...............+++....
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~  140 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ------------------------IRQVTDGRSNNTEPTWFPDSQN  140 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC------------------------EEECCCCSSCEEEEEECTTSSE
T ss_pred             cccceecCCCCeeeEeeecCCccceeeccccccc------------------------ceeeeecccccccccccccccc
Confidence            8899999966555544544544444443332211                        0001111223344456666555


Q ss_pred             EEEEEeCCCcEEEE--ECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCC-CeEEEE
Q 004685          230 LLLVGGSDAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-EHVYLM  306 (737)
Q Consensus       230 ~l~t~s~Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~d-g~v~iw  306 (737)
                      .+++...++...+|  ++........                     ... ........|+|+++.++..+.+ +...+|
T Consensus       141 ~~~~~~~~g~~~i~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~spdg~~~~~~~~~~~~~~i~  198 (269)
T d2hqsa1         141 LAFTSDQAGRPQVYKVNINGGAPQRI---------------------TWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIA  198 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCCEEC---------------------CCS-SSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred             ceecccccCCceEeeeecccccceee---------------------ecc-cccccccccccccceeEEEeecCCceeee
Confidence            66666666655444  4443221100                     001 1136678999999998887774 444444


Q ss_pred             EcCCCCcceeeeecCCCCeeeeeccCCCCccCC
Q 004685          307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (737)
Q Consensus       307 d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  339 (737)
                      .....................+|+|+++.+++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~  231 (269)
T d2hqsa1         199 KQDLATGGVQVLSSTFLDETPSLAPNGTMVIYS  231 (269)
T ss_dssp             EEETTTCCEEECCCSSSCEEEEECTTSSEEEEE
T ss_pred             EeecccccceEeecCccccceEECCCCCEEEEE
Confidence            444433334444455566778899999887764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.98  E-value=0.00073  Score=66.65  Aligned_cols=205  Identities=12%  Similarity=0.088  Sum_probs=119.3

Q ss_pred             ccCCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCeEEEEEcc-cCccceEEEEEeeCCCCCEEEEEECC------
Q 004685           48 GHQGCVNAISWNSKGSLLISGSD----DTHINVWSYSSRKLLHSIET-GHSANVFCTKFVPETSDELVVSGAGD------  116 (737)
Q Consensus        48 ~H~~~V~~l~~s~~g~~lasgs~----dg~V~vwd~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~d------  116 (737)
                      ........|+|+++|+++++...    .+.|...+..++........ .-......+++.++  |.++++-...      
T Consensus        79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~--G~l~vtd~~~~~~~~~  156 (319)
T d2dg1a1          79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK--GGFYFTDFRGYSTNPL  156 (319)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT--SCEEEEECCCBTTBCC
T ss_pred             CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEec--cceeecccccccccCc
Confidence            34456789999999998877643    23455556555544333311 11345788999998  7777664321      


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceE
Q 004685          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (737)
Q Consensus       117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~  196 (737)
                      +.+..++...           ..+..+...-...+.++|+|++..++++-+..+.|..|++......         . ..
T Consensus       157 g~v~~~~~dg-----------~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~---------~-~~  215 (319)
T d2dg1a1         157 GGVYYVSPDF-----------RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT---------I-QP  215 (319)
T ss_dssp             EEEEEECTTS-----------CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS---------E-EE
T ss_pred             ceeEEEeccc-----------ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCce---------e-cc
Confidence            2233333321           1122222233446789999965556667778899999998754311         0 00


Q ss_pred             EEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCC
Q 004685          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (737)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (737)
                      ..       ...............+++.++ +++.++....+.|.+||. .++.+..+..+..+              .+
T Consensus       216 ~~-------~~~~~~~~~~~~PdGl~vD~~-G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~--------------~~  272 (319)
T d2dg1a1         216 FG-------ATIPYYFTGHEGPDSCCIDSD-DNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD--------------EG  272 (319)
T ss_dssp             EE-------EEEEEECCSSSEEEEEEEBTT-CCEEEEEETTTEEEEECT-TSCEEEEEECTTGG--------------GT
T ss_pred             cc-------ceeeeccCCccceeeeeEcCC-CCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcC--------------CC
Confidence            00       000000111223567999987 578888888999999996 56655554322110              01


Q ss_pred             CcccceeEEEEcCCCCEEEEEeC
Q 004685          277 RSSLHLTHVTFSPNGEEVLLSYS  299 (737)
Q Consensus       277 ~~~~~i~~v~~sp~g~~l~~g~~  299 (737)
                      +. ..+++++|.|++..+++...
T Consensus       273 ~~-~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         273 HM-LRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CS-CBCCEEEECTTSCEEEEEEE
T ss_pred             cC-ceeeeEEEeCCCCEEEEEcC
Confidence            11 14789999998887777654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.73  E-value=0.0046  Score=59.80  Aligned_cols=195  Identities=11%  Similarity=0.095  Sum_probs=121.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccc---CccceEEEEEeeCCCCCEEEEEEC----CCcEEEE
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG---HSANVFCTKFVPETSDELVVSGAG----DAEVRLF  122 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~---h~~~V~~v~~sp~~~~~~l~sgs~----dg~I~iw  122 (737)
                      ...+.++++.++|.+++++ .+ .|.++|..+++........   ....++.+.+.|+  |.+.++...    .+.-.+|
T Consensus        58 ~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~--G~iw~~~~~~~~~~~~g~l~  133 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIY  133 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEE
T ss_pred             CCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCC--CCEEEEeccccccccceeEe
Confidence            4568899999998877754 44 6889999988754332111   1235788999998  677766542    2344566


Q ss_pred             ecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccC
Q 004685          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (737)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~  202 (737)
                      .+..+.           +..+...-.....++|++++..++++-+..+.|..+++.......      ......+     
T Consensus       134 ~~~~g~-----------~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~------~~~~~~~-----  191 (295)
T d2ghsa1         134 HVAKGK-----------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP------TGKAEVF-----  191 (295)
T ss_dssp             EEETTE-----------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB------SSCCEEE-----
T ss_pred             eecCCc-----------EEEEeeccCCcceeeecCCCceEEEeecccceeeEeeeccccccc------ccceEEE-----
Confidence            554321           222222233457899999766677777888999999886432110      0001111     


Q ss_pred             CceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccce
Q 004685          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (737)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  282 (737)
                            ............+++..+ +++.++.-..+.|..||. .++.+..+..+                     ...+
T Consensus       192 ------~~~~~~~g~pdG~~vD~~-GnlWva~~~~g~V~~~dp-~G~~~~~i~lP---------------------~~~~  242 (295)
T d2ghsa1         192 ------IDSTGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDT-DGNHIARYEVP---------------------GKQT  242 (295)
T ss_dssp             ------EECTTSSSEEEEEEECTT-SCEEEEEETTTEEEEECT-TCCEEEEEECS---------------------CSBE
T ss_pred             ------eccCcccccccceEEcCC-CCEEeeeeCCCceEEecC-CCcEeeEecCC---------------------CCce
Confidence                  112223445788899886 577777777889999996 46555444221                     0148


Q ss_pred             eEEEEc-CCCCEEEEEeC
Q 004685          283 THVTFS-PNGEEVLLSYS  299 (737)
Q Consensus       283 ~~v~~s-p~g~~l~~g~~  299 (737)
                      ++++|- |+.+.|++.+.
T Consensus       243 T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         243 TCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEEESTTSCEEEEEEB
T ss_pred             EEEEEeCCCCCEEEEEEC
Confidence            999996 78777776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.54  E-value=0.015  Score=56.00  Aligned_cols=225  Identities=10%  Similarity=-0.011  Sum_probs=130.6

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCC
Q 004685           55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  133 (737)
Q Consensus        55 ~l~~s~-~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~  133 (737)
                      +-.|++ ++.++.+--..+.|..||..+++.. .+  .....+.++++.++  +.++++ +.+ -|.++|........  
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~--~~~~~~~~i~~~~d--g~l~va-~~~-gl~~~d~~tg~~~~--   92 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VH--ALPFMGSALAKISD--SKQLIA-SDD-GLFLRDTATGVLTL--   92 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE--ECSSCEEEEEEEET--TEEEEE-ETT-EEEEEETTTCCEEE--
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE--ECCCCcEEEEEecC--CCEEEE-EeC-ccEEeecccceeeE--
Confidence            456887 5556666657789999999988654 33  23457889999888  566654 555 48888887643111  


Q ss_pred             CCCCCCceeecc--CCCceeEEEEecCCCcEEEEEeCC----CcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          134 DNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       134 ~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~D----g~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                            +.....  ....++.+.+.| ++.+.++....    +.-.+|.+..++                       ...
T Consensus        93 ------l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~-----------------------~~~  142 (295)
T d2ghsa1          93 ------HAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGK-----------------------VTK  142 (295)
T ss_dssp             ------EECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTE-----------------------EEE
T ss_pred             ------EeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCCc-----------------------EEE
Confidence                  111111  123577888888 44555443321    223344433332                       111


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccceeEEEE
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  287 (737)
                      +..   .....+.++|++++..++++-+..+.|..|++........-        ....+    ....+.. ...-.+++
T Consensus       143 ~~~---~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~--------~~~~~----~~~~~~~-g~pdG~~v  206 (295)
T d2ghsa1         143 LFA---DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG--------KAEVF----IDSTGIK-GGMDGSVC  206 (295)
T ss_dssp             EEE---EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS--------CCEEE----EECTTSS-SEEEEEEE
T ss_pred             Eee---ccCCcceeeecCCCceEEEeecccceeeEeeeccccccccc--------ceEEE----eccCccc-ccccceEE
Confidence            111   12245789999986556777778889999987532211000        00000    0001111 13677999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeec-cCCCC
Q 004685          288 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNG  335 (737)
Q Consensus       288 sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-p~~~~  335 (737)
                      +.+|.+.++.-..+.|..||. .++...........++.++|- |+.+.
T Consensus       207 D~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~  254 (295)
T d2ghsa1         207 DAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASR  254 (295)
T ss_dssp             CTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred             cCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCE
Confidence            999998888778899999995 456554444444567778885 44443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.028  Score=57.88  Aligned_cols=93  Identities=15%  Similarity=0.188  Sum_probs=57.5

Q ss_pred             ccccccccccccccceeecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccce------------
Q 004685           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV------------   96 (737)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V------------   96 (737)
                      .+-+++....+.+++.........+....|||||+.||-.. ++.|.+.+..++..++....+....|            
T Consensus        92 ~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee  170 (465)
T d1xfda1          92 YYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE  170 (465)
T ss_dssp             EEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred             cEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhh
Confidence            34444544344444444444455677789999999988775 56888988887765554422222222            


Q ss_pred             -----EEEEEeeCCCCCEEEEEEC-CCcEEEEec
Q 004685           97 -----FCTKFVPETSDELVVSGAG-DAEVRLFNL  124 (737)
Q Consensus        97 -----~~v~~sp~~~~~~l~sgs~-dg~I~iwd~  124 (737)
                           ..+.|||+  |..||.... +..|..+.+
T Consensus       171 ~~~~~~a~~WSPD--gk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         171 ILKTHIAHWWSPD--GTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             TSSSSEEEEECTT--SSEEEEEEEECTTSCEEEE
T ss_pred             hccccceEEECCC--CCeEEEEEecccccceeec
Confidence                 46789999  688877653 344555544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.37  E-value=0.0073  Score=57.78  Aligned_cols=159  Identities=11%  Similarity=0.125  Sum_probs=106.9

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-cccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      .....++++.++|.++++....+.+.+++.. ++.+..+ ...+......+++.++  ++++++....+.|++|+..-  
T Consensus       113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~--g~i~v~d~~~~~V~~~d~~G--  187 (279)
T d1q7fa_         113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK--QEIFISDNRAHCVKVFNYEG--  187 (279)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS--SEEEEEEGGGTEEEEEETTC--
T ss_pred             ccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeeccc--eeEEeeeccccceeeeecCC--
Confidence            4556789999999988888777888888865 4555554 1345567888999988  68888888889999999763  


Q ss_pred             CCCCCCCCCCCceee--ccCCCceeEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          129 GRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~-Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                               +.+..+  .+.......|++.+ +++++++-.. ++.|.+|+.. ++.+           .. +.      
T Consensus       188 ---------~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~-G~~~-----------~~-~~------  238 (279)
T d1q7fa_         188 ---------QYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQLI-----------SA-LE------  238 (279)
T ss_dssp             ---------CEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SCEE-----------EE-EE------
T ss_pred             ---------ceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECCC-CCEE-----------EE-Ee------
Confidence                     113333  23455678999999 4577766543 4568998743 3211           00 10      


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~  249 (737)
                          . .........+++.|+ +. |++++.+..|++|......
T Consensus       239 ----~-~~~~~~p~~vav~~d-G~-l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         239 ----S-KVKHAQCFDVALMDD-GS-VVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             ----E-SSCCSCEEEEEEETT-TE-EEEEETTTEEEEEECSCCC
T ss_pred             ----C-CCCCCCEeEEEEeCC-Cc-EEEEeCCCeEEEEEeeeec
Confidence                0 111234678899997 45 5556678999999987654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.0074  Score=62.50  Aligned_cols=219  Identities=7%  Similarity=-0.025  Sum_probs=115.7

Q ss_pred             ccccccccccccccccceeecc-cCCceEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCeEEEEE-cccCccc
Q 004685           27 NHSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGS---------DDTHINVWSYSSRKLLHSI-ETGHSAN   95 (737)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~~s~~g~~lasgs---------~dg~V~vwd~~~~~~~~~~-~~~h~~~   95 (737)
                      ++.+.+++....+.+.+..... ....+....||||+++|+...         ..+.+.++|+.++...... .......
T Consensus        36 ~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~  115 (465)
T d1xfda1          36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAK  115 (465)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCC
T ss_pred             CCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccc
Confidence            3457777744443332222221 234677889999999887663         3567899999988654322 1223445


Q ss_pred             eEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCCCceeeccCC---------CceeEEEEecCCCcEEEEE
Q 004685           96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT---------RRVKKLAVEVGNPHVVWSA  166 (737)
Q Consensus        96 V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~p~~~~~l~s~  166 (737)
                      +....|||+  |+.||-.. ++.|.+.+............ ...-..+.+..         ..-..+-|+|++..+++.-
T Consensus       116 l~~~~wSPD--G~~iafv~-~~nl~~~~~~~~~~~~lt~~-g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         116 LQYAGWGPK--GQQLIFIF-ENNIYYCAHVGKQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             CSBCCBCSS--TTCEEEEE-TTEEEEESSSSSCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             cceeeeccC--CceEEEEe-cceEEEEecCCCceEEEecc-cCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            667889999  67777765 56788777764322110000 00000111111         1124678999554444444


Q ss_pred             eCCCcEEEEEcCCCC--CC--------CCCCCCCCccceEEEeccCCceeeccCCC----CCccceEEEEEecCCCcEEE
Q 004685          167 SEDGTLRQHDFRQGS--SC--------PPAGSSHQECRNILLDLRCGAKRSLADPP----KQTLSLKSCDISSTRPHLLL  232 (737)
Q Consensus       167 s~Dg~I~vwdl~~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~i~~sp~~~~~l~  232 (737)
                      ..+..|..+.+....  ..        +..+.........++++..+.........    .....+..+.|+|+ +++++
T Consensus       192 ~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d-~~~~~  270 (465)
T d1xfda1         192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS-TKVAV  270 (465)
T ss_dssp             EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS-SEEEE
T ss_pred             ecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCC-CeEEE
Confidence            455667777654321  10        11122223334455666554433222211    12234678899987 45554


Q ss_pred             EEe-CC---CcEEEEECCCCCC
Q 004685          233 VGG-SD---AFARLYDRRMLPP  250 (737)
Q Consensus       233 t~s-~D---g~i~iwd~~~~~~  250 (737)
                      ... .+   ..|.++|..+++.
T Consensus       271 ~~~nR~q~~~~i~~~d~~tg~~  292 (465)
T d1xfda1         271 TWLNRAQNVSILTLCDATTGVC  292 (465)
T ss_dssp             EEEETTSCEEEEEEEETTTCCE
T ss_pred             EEEccccccceEEEEcCCCCcE
Confidence            432 22   3577888887753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.061  Score=50.47  Aligned_cols=213  Identities=8%  Similarity=0.031  Sum_probs=126.6

Q ss_pred             ceeecccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEE
Q 004685           43 ERELEGHQGCVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (737)
Q Consensus        43 ~~~l~~H~~~V~~l~~s~~g~~lasg-s~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~i  121 (737)
                      ...+..+...+.+|+|.+..+.|.-. ..++.|+..+++.+.....+ ......+.++++..-+ +.+..+-...+.|.+
T Consensus        28 ~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~-~~~~~~p~~iAvD~~~-~~lY~~d~~~~~I~~  105 (263)
T d1npea_          28 KAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLG-RTIFWTDSQLDRIEV  105 (263)
T ss_dssp             EEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred             ccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE-EeccccccEEEEeccC-CeEEEeccCCCEEEE
Confidence            33444555668889999877766654 55678988898766544444 3334568899998763 445555566789999


Q ss_pred             EecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCCCCCCccceEEEe
Q 004685          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLD  199 (737)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~--I~vwdl~~~~~~~~~~~~~~~~~~~~~~  199 (737)
                      .++.....          ..........+..++++|..+.++.+-...+.  |..-++.....            ..+. 
T Consensus       106 ~~~dg~~~----------~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~------------~~i~-  162 (263)
T d1npea_         106 AKMDGTQR----------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------------RILA-  162 (263)
T ss_dssp             EETTSCSC----------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------------EEEE-
T ss_pred             EecCCceE----------EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc------------eeee-
Confidence            99874221          11222233567899999977666655433233  44444443221            1111 


Q ss_pred             ccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcc
Q 004685          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (737)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (737)
                                .  .......++++++..+.++.+-...+.|...|+........+                    .+-. 
T Consensus       163 ----------~--~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~--------------------~~~~-  209 (263)
T d1npea_         163 ----------Q--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL--------------------EGLQ-  209 (263)
T ss_dssp             ----------C--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE--------------------ECCC-
T ss_pred             ----------e--ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEE--------------------CCCC-
Confidence                      0  112345789999876555566567788998888753311111                    0001 


Q ss_pred             cceeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccee
Q 004685          280 LHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAM  316 (737)
Q Consensus       280 ~~i~~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~  316 (737)
                       ....|++.  +.+|+... ..+.|...|..+++....
T Consensus       210 -~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~  244 (263)
T d1npea_         210 -YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDT  244 (263)
T ss_dssp             -SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             -CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceE
Confidence             13467764  45566665 578999999988664433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.79  E-value=0.08  Score=49.55  Aligned_cols=99  Identities=10%  Similarity=0.051  Sum_probs=58.2

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEEC-CC-----cEEEEecCCCC
Q 004685           57 SWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA-----EVRLFNLSRFS  128 (737)
Q Consensus        57 ~~s~~--g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg-----~I~iwd~~~~~  128 (737)
                      ..+|+  |+.+|-.+ ++.|.+.|+.+++.. .+ ..+...+...+|||+  |+.|+.... ++     .|.+++...+.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~L-t~~~~~~~~p~~SPD--G~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KI-VSNLGVINNARFFPD--GRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EE-ECSSSEEEEEEECTT--SSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EE-ecCCCcccCEEECCC--CCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            45788  98887654 457888899988764 44 456778899999999  687775532 22     35555555432


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEE
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  165 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  165 (737)
                      .....    ..-..............|+|++ +.|+.
T Consensus        80 ~~~lt----~~~~~~~~~~~~~~~~~~spdg-~~l~~  111 (281)
T d1k32a2          80 IKRIT----YFSGKSTGRRMFTDVAGFDPDG-NLIIS  111 (281)
T ss_dssp             EEECC----CCCEEEETTEECSEEEEECTTC-CEEEE
T ss_pred             eEEee----ecCCCccCccccccccccCCCC-CEEEE
Confidence            21100    0000111122345678899944 55544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.56  Score=43.52  Aligned_cols=227  Identities=7%  Similarity=-0.002  Sum_probs=130.9

Q ss_pred             cCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCe---EEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEec
Q 004685           49 HQGCVNAISWNSKGSLLISG-SDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasg-s~dg~V~vwd~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~  124 (737)
                      ....+.+|+|++..+.|.-. ...+.|...++....   ....+.......+.++++.+.+ +++..+-...+.|.+.++
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~-~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEET
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc-ceEEEEecCCCEEEeEec
Confidence            44567789999977766654 456667766665321   1122212333557788888764 556666667788999998


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCC
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (737)
                      .....          .............++++|..+.++++-. ..+.|.-.++.....            ..+.     
T Consensus       107 ~g~~~----------~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~------------~~l~-----  159 (266)
T d1ijqa1         107 KGVKR----------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLV-----  159 (266)
T ss_dssp             TSSSE----------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEE-----
T ss_pred             CCceE----------EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce------------eccc-----
Confidence            74221          2223344566789999996656665542 334566666554321            1111     


Q ss_pred             ceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCccccee
Q 004685          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (737)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (737)
                            .  .......++++++.++.++.+-...+.|...|+...........                  . .......
T Consensus       160 ------~--~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~------------------~-~~~~~p~  212 (266)
T d1ijqa1         160 ------T--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED------------------E-KRLAHPF  212 (266)
T ss_dssp             ------C--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC------------------T-TTTSSEE
T ss_pred             ------c--cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC------------------C-CcccccE
Confidence                  0  11234678999987655666667778999989865432111100                  0 0011245


Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcceeeee-cCCCCeeeeeccC
Q 004685          284 HVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPT  332 (737)
Q Consensus       284 ~v~~sp~g~~l~~g~-~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~p~  332 (737)
                      .+++.  +.+|+.+. .++.|+..+..++........ ...+.....++|.
T Consensus       213 ~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~~  261 (266)
T d1ijqa1         213 SLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNL  261 (266)
T ss_dssp             EEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGG
T ss_pred             EEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceEEEEECCc
Confidence            67765  44566665 578999999888765554443 3445556667775

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.55  E-value=0.58  Score=43.33  Aligned_cols=166  Identities=10%  Similarity=-0.004  Sum_probs=98.7

Q ss_pred             CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCC
Q 004685           50 QGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (737)
Q Consensus        50 ~~~V~~l~~s~~g~~l-asgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~  128 (737)
                      ...+.+|++..-+..| ++-...+.|.+.+++.......+ ......+..+++.|.. +.++.+-...+..+||..... 
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~-~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~d-  154 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-DTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMD-  154 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETT-
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEe-cccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCC-
Confidence            3567899998755544 45566789999998866543333 3334678899999984 444444333334445544321 


Q ss_pred             CCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeec
Q 004685          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (737)
                      +..       ........-.....+++++.+..++++-...+.|...|+.....            ..           +
T Consensus       155 G~~-------~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~------------~~-----------v  204 (263)
T d1npea_         155 GTN-------RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR------------RK-----------V  204 (263)
T ss_dssp             SCC-------CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE------------EE-----------E
T ss_pred             CCC-------ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe------------EE-----------E
Confidence            110       11222223345689999986655666666678888888865431            11           1


Q ss_pred             cCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCccc
Q 004685          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (737)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~  253 (737)
                      ....   ....++++..  +.++.+-...+.|...|..+++.+..
T Consensus       205 ~~~~---~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~g~~~~~  244 (263)
T d1npea_         205 LEGL---QYPFAVTSYG--KNLYYTDWKTNSVIAMDLAISKEMDT  244 (263)
T ss_dssp             EECC---CSEEEEEEET--TEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ECCC---CCcEEEEEEC--CEEEEEECCCCEEEEEECCCCccceE
Confidence            1111   1235677763  45666766778899999887765443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.36  E-value=0.032  Score=52.52  Aligned_cols=70  Identities=13%  Similarity=0.151  Sum_probs=52.7

Q ss_pred             ccCC--CCEEEEecCCCcEEEEEcCcccEEEEeecCCCceEEEEecCCCCeEEEEe-cCC-----cEEEEcCCCCCCccc
Q 004685          635 LGQR--GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG-IDN-----TIKIWTPSASVPSIV  706 (737)
Q Consensus       635 ~s~d--~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH~~~V~~v~~sp~~~~l~S~~-~Dg-----~i~lW~~~~~~~~~~  706 (737)
                      .|||  |+.||-.+ ++.|++.|+.+++. +.|..+.+.+...+|||||+.||=.. .++     .|.+.+..+++....
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            6899  98877654 45688889998886 57888888999999999999777433 222     377777777776543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.33  E-value=0.16  Score=50.05  Aligned_cols=234  Identities=12%  Similarity=0.133  Sum_probs=117.0

Q ss_pred             EEEEcC---CCCEEEEEe-CCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCc------------
Q 004685           55 AISWNS---KGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE------------  118 (737)
Q Consensus        55 ~l~~s~---~g~~lasgs-~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~------------  118 (737)
                      .+++..   ||++|+... .++.|-+.|+.+.++.+.+.......+..++..++.+-.+++..+.+..            
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            466654   788887665 6889999999999986655334556677777765432467777665332            


Q ss_pred             ------EEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCCC---------------cEEEEEc
Q 004685          119 ------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---------------TLRQHDF  177 (737)
Q Consensus       119 ------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg---------------~I~vwdl  177 (737)
                            +.+.|..+.+.          ..... -......+.+++++ +++++.+.+.               .+.++++
T Consensus       169 ~~y~~~~t~ID~~tm~V----------~~QV~-V~g~ld~~~~s~dG-K~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~  236 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEV----------AWQVL-VSGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI  236 (459)
T ss_dssp             G-EEEEEEEEETTTTEE----------EEEEE-ESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred             hhcceEEEEEecCCceE----------EEEee-eCCChhccccCCCC-CEEEEEeccccCCcchhhcccccceEEEEech
Confidence                  44555553221          11111 12345578888855 5555554321               2333433


Q ss_pred             CCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCC
Q 004685          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (737)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~  257 (737)
                      ...+...............+.+.+......+...-.-......+.++|++...++++..+.++.++|++.....  +...
T Consensus       237 ~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~--~~~~  314 (459)
T d1fwxa2         237 AEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV--FYEN  314 (459)
T ss_dssp             HHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH--HHSC
T ss_pred             HHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhh--hccc
Confidence            21110000000000011122232211000000000001234578899986555666668899999999753321  1000


Q ss_pred             CCCCCCccccccccccCCCCcccceeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 004685          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (737)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~~g~~dg~v~iwd~~~  310 (737)
                      ..+..++        .....-+..-..-+|+..|.-..+-.-|..|.-|++..
T Consensus       315 ~~~~~~~--------~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         315 ADPRSAV--------VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             C-GGGGE--------EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCccccE--------EeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            0000000        00001111345678998885333444599999999975

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.95  E-value=4.2  Score=41.98  Aligned_cols=53  Identities=8%  Similarity=-0.021  Sum_probs=37.3

Q ss_pred             cCCCCEEEEecCCCcEEEEEcCcccEEEEeecC-CCceEEEEecCCCC-eEEEEe
Q 004685          636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD-EAVVNCVQCHPFDC-VVATSG  688 (737)
Q Consensus       636 s~d~~~l~sgs~D~~i~iWd~~t~~~~~~l~gH-~~~V~~v~~sp~~~-~l~S~~  688 (737)
                      +-.+.+|+.|+.|+.++.+|.+||+.+=.+.-- ...-.-+.|..||+ |++...
T Consensus       472 ~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         472 YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence            345778889999999999999999999666421 11122255666886 665544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.94  E-value=2.4  Score=39.19  Aligned_cols=230  Identities=11%  Similarity=0.136  Sum_probs=128.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEECCCcEEEEecCCCCCCCCCCC
Q 004685           56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  135 (737)
Q Consensus        56 l~~s~~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  135 (737)
                      .-.+|..+.||.=+ ..++.|+|+++.+.++.+.  ...+|..-.|-.+   +.|+-.. +..|+-|++....       
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~---~~L~lVT-~taVYHW~~~g~s-------  133 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGES-------  133 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEESSS---SEEEEEC-SSEEEEEESSSSC-------
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE--cCCCcEEEEecCC---CEEEEEc-CCceEEEcccCCC-------
Confidence            34578888887665 4589999999999998873  5568888888876   5665554 5679999985321       


Q ss_pred             CCCCceeeccCC----CceeEEEEecCCCcEEEEE--e----CCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCce
Q 004685          136 AITPSALYQCHT----RRVKKLAVEVGNPHVVWSA--S----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (737)
Q Consensus       136 ~~~~~~~~~~h~----~~v~~l~~~p~~~~~l~s~--s----~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (737)
                        .|...+..|.    ..|..-..+++..-++++|  .    -.|.+.+|..+.....  ...+|..   .+..++    
T Consensus       134 --~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ--~ieGhaa---~F~~~~----  202 (327)
T d1utca2         134 --QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAA---SFAQFK----  202 (327)
T ss_dssp             --CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE--EECCSEE---EEEEEC----
T ss_pred             --CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc--cccceee---eeEEEE----
Confidence              3355555443    3555666666332233333  1    2366778887765311  1111100   000000    


Q ss_pred             eeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCC-cccccCCCCCCCCccccccccccCCCCcccceeE
Q 004685          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (737)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (737)
                           .++...+..-++|...       +...+.++|.++..... ...+..     .....+.+..    .... --.+
T Consensus       203 -----~~g~~~~~~lf~fa~r-------~~~~~kLhIiEig~~~~g~~~f~k-----k~vdi~fppe----a~~D-FPva  260 (327)
T d1utca2         203 -----MEGNAEESTLFCFAVR-------GQAGGKLHIIEVGTPPTGNQPFPK-----KAVDVFFPPE----AQND-FPVA  260 (327)
T ss_dssp             -----CTTCSSCEEEEEEEEE-------ETTEEEEEEEECSCCCTTCCCCCC-----EEEECCCCTT----CTTC-CEEE
T ss_pred             -----cCCCCCCceEEEEEEC-------CCCCcEEEEEEcCCCccCCCCCcc-----eeEEEECCcc----ccCC-cEEE
Confidence                 0111111112222211       12337899998865321 111100     0011111111    1111 2457


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCCCcceeeeecCCCCeeeeeccC
Q 004685          285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (737)
Q Consensus       285 v~~sp~g~~l~~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~p~  332 (737)
                      +..|+....++.-+.-|.|++||+.++.......-..+.+-..+-...
T Consensus       261 mqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~  308 (327)
T d1utca2         261 MQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA  308 (327)
T ss_dssp             EEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred             EEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCC
Confidence            889999899999999999999999998876666655666555554443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=2.4  Score=38.91  Aligned_cols=166  Identities=8%  Similarity=-0.009  Sum_probs=101.3

Q ss_pred             CceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE-CCCcEEEEecCCCC
Q 004685           51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVRLFNLSRFS  128 (737)
Q Consensus        51 ~~V~~l~~s~~g~-~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs-~dg~I~iwd~~~~~  128 (737)
                      ..+.+|++.+-+. +..+-...+.|.+.++........+ .........+++.|.. +.++.+-. ..+.|.-.++....
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~-~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I~r~~~dGs~  154 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVD  154 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEE-cCCCCCcceEEEEccc-CeEEEeccCCCcceeEeccCCCc
Confidence            4567888887554 4455566788999999876654444 4455678899999974 44444432 23445555554211


Q ss_pred             CCCCCCCCCCCceee-ccCCCceeEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceee
Q 004685          129 GRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (737)
Q Consensus       129 ~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (737)
                                 ...+ ...-.....+++++.+..+.++-...+.|...++......            .           
T Consensus       155 -----------~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~------------~-----------  200 (266)
T d1ijqa1         155 -----------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK------------T-----------  200 (266)
T ss_dssp             -----------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------------E-----------
T ss_pred             -----------eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE------------E-----------
Confidence                       2222 2233557899999866666666677788998888654311            1           


Q ss_pred             ccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccc
Q 004685          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (737)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~  254 (737)
                      +...........++++..  +.++.+-..++.|...+..+++....+
T Consensus       201 ~~~~~~~~~~p~~lav~~--~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         201 ILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEeCCCcccccEEEEEEC--CEEEEEECCCCeEEEEECCCCcceEEE
Confidence            111111223456677774  456666667788888888777654443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.43  E-value=0.95  Score=44.14  Aligned_cols=97  Identities=11%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             ccccccccccccccceeec-ccCCceEEEEEcCCCCEEEEEeCC-CcEEEEECCCCeEEEEEcccCccceEEEEEeeCCC
Q 004685           29 SLQMHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (737)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~s~~g~~lasgs~d-g~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~  106 (737)
                      .+.+|+....+......+. .|.....+.++.++|.+++.|+.+ ..+.+||..+......-.......-.+++..++  
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d--  130 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD--  130 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT--
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecC--
Confidence            3557887766666554443 233334566788999999988755 689999998876543211111222345666777  


Q ss_pred             CCEEEEEECC------CcEEEEecCCC
Q 004685          107 DELVVSGAGD------AEVRLFNLSRF  127 (737)
Q Consensus       107 ~~~l~sgs~d------g~I~iwd~~~~  127 (737)
                      +.+++.|+.+      ..+.+||....
T Consensus       131 G~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         131 GRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             SCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             CceeeeccccccccccceeeeecCCCC
Confidence            6888888753      35889998763

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.27  E-value=7.5  Score=38.20  Aligned_cols=62  Identities=15%  Similarity=0.212  Sum_probs=40.8

Q ss_pred             cCCceEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCEEEEEE
Q 004685           49 HQGCVNAISWNSKGSLLISG-----SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (737)
Q Consensus        49 H~~~V~~l~~s~~g~~lasg-----s~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs  114 (737)
                      +.-.+..+++||+++++|.+     +.-..|+++|+.+++.+....  .......++|.++  +..|+...
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i--~~~~~~~~~W~~D--~~~~~Y~~  189 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERVKFSCMAWTHD--GKGMFYNA  189 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEECSCCEEECTT--SSEEEEEE
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc--ccccccceEEcCC--CCEEEEEE
Confidence            33345677899999988843     223468999999998765321  1222357889999  56665443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=88.81  E-value=4  Score=39.31  Aligned_cols=118  Identities=16%  Similarity=0.062  Sum_probs=70.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCC-----------cEEEEECCCCeEEE--EEcccCccceEEEEEeeCCCCCEEEEEECC-C
Q 004685           52 CVNAISWNSKGSLLISGSDDT-----------HINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGD-A  117 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~dg-----------~V~vwd~~~~~~~~--~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-g  117 (737)
                      ++.......+|+.++.|+.+.           .+.+||..+++...  .....+.......++.++  +.+++.|+.+ .
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~--g~i~v~Gg~~~~   98 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN--GQIVVTGGNDAK   98 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT--SCEEEECSSSTT
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecC--CcEEEeecCCCc
Confidence            334444556888888887531           36799998875322  222334444556678888  7888888765 6


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCceeeccCCCceeEEEEecCCCcEEEEEeCC------CcEEEEEcCCCC
Q 004685          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGS  181 (737)
Q Consensus       118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D------g~I~vwdl~~~~  181 (737)
                      .+.+||..+..-.        ....+.... .-...+..+ ++.+++.++.+      ..+.+||..+..
T Consensus        99 ~~~~yd~~~~~w~--------~~~~~~~~r-~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          99 KTSLYDSSSDSWI--------PGPDMQVAR-GYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             CEEEEEGGGTEEE--------ECCCCSSCC-SSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ceeEecCccCccc--------ccccccccc-cccceeeec-CCceeeeccccccccccceeeeecCCCCc
Confidence            8999998863211        111221111 123455556 55777777643      368889987754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.60  E-value=15  Score=34.58  Aligned_cols=164  Identities=11%  Similarity=0.064  Sum_probs=84.7

Q ss_pred             ceEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCeEEE-EEc-ccC-----ccceEEEEEeeCCCCC-EEE
Q 004685           52 CVNAISWNSKGSLLISGSD------------DTHINVWSYSSRKLLH-SIE-TGH-----SANVFCTKFVPETSDE-LVV  111 (737)
Q Consensus        52 ~V~~l~~s~~g~~lasgs~------------dg~V~vwd~~~~~~~~-~~~-~~h-----~~~V~~v~~sp~~~~~-~l~  111 (737)
                      ..-.|...|+|..+++++.            .|.|.++|+.+.+... .+. .+.     .-....+....+.++. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3456888899887766542            4899999987653211 110 111     1123555544332233 344


Q ss_pred             EEE---CCCcEEEEecCCCCCCCCCCCCCCCceeec-cCCCceeEEEEecCCCcEEEEEeC---C------------CcE
Q 004685          112 SGA---GDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASE---D------------GTL  172 (737)
Q Consensus       112 sgs---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~---D------------g~I  172 (737)
                      +..   ...+|.+|++......      ...+..+. ......+++++.. ++.+++|-..   +            ++.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~------l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g  188 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKS------LLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWS  188 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTE------EEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred             EEeccCCCceeEEEEEeCCCCe------EEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCce
Confidence            442   3567888887643211      11111221 1123467777776 4466665311   0            111


Q ss_pred             EEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004685          173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (737)
Q Consensus       173 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~  248 (737)
                      .+|.....                       ....+.   ......+.++++|++..++++-+..+.|+.|++...
T Consensus       189 ~v~~~~~~-----------------------~~~~~~---~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         189 FVTYYSPN-----------------------DVRVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EEEEECSS-----------------------CEEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             eEEEEcCC-----------------------ceEEEc---CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            22222111                       111111   112356899999986556666678899999998753

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.62  E-value=2.2  Score=33.26  Aligned_cols=109  Identities=19%  Similarity=0.149  Sum_probs=86.4

Q ss_pred             hhhhHHHHhhhcccCCCCccchhhhhhhhhcccCCCCCcchhhhhhHHHHHhhhcccccchhhhHHHHHHhhccCCcccc
Q 004685          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR  442 (737)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  442 (737)
                      ...+...++.....|. +..++..+..++...+..      ..++.+++.++...   ++...|+.++..++.++|....
T Consensus         3 ~~~l~~~g~~~~~~g~-~~eAi~~~~~al~~~p~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~   72 (117)
T d1elwa_           3 VNELKEKGNKALSVGN-IDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKPDWGK   72 (117)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCcc------hhhhhccccccccc---ccccccchhhhhHHHhccchhh
Confidence            3455666777777776 678889999988876664      45677888777764   4455788999999999999999


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhcccCCCchhhHHHH
Q 004685          443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV  481 (737)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (737)
                      +.+.....+..+++..++...........|.........
T Consensus        73 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  111 (117)
T d1elwa_          73 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL  111 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999999999999999999999876654333

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=82.86  E-value=20  Score=33.81  Aligned_cols=218  Identities=11%  Similarity=0.121  Sum_probs=111.3

Q ss_pred             EEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEEcccCccceEEEEEee----CCCCCEEEEEE-CC---CcEEEEec
Q 004685           56 ISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP----ETSDELVVSGA-GD---AEVRLFNL  124 (737)
Q Consensus        56 l~~s~---~g~~lasgs~dg~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp----~~~~~~l~sgs-~d---g~I~iwd~  124 (737)
                      |=++|   +..+++...+.+-|.+||+. |+.+..+   ..+.++.|..-.    .....-++.++ .+   .+|.+|.+
T Consensus        31 IW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~---~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~i  106 (353)
T d1h6la_          31 IWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSY---HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (353)
T ss_dssp             EECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEEC---CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEE
T ss_pred             EEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEec---ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEe
Confidence            44454   45677777777779999986 6666665   234566555432    11012244444 32   35888887


Q ss_pred             CCCCCCCCCCCCCCCceeeccCCCceeEEEE--ecCCCc-EEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEecc
Q 004685          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAV--EVGNPH-VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (737)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~p~~~~-~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~  201 (737)
                      ...........  .+......-...+..+++  ++.++. +++....+|.+..|.+.......       -....+..  
T Consensus       107 d~~~~~l~~~~--~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~-------v~~~lvr~--  175 (353)
T d1h6la_         107 DGKNGTLQSIT--DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY-------ISGKKVRA--  175 (353)
T ss_dssp             ETTTTEEEECS--CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS-------EEEEEEEE--
T ss_pred             cCccccccccc--ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc-------eeeEeeec--
Confidence            64221100000  000001111223556666  565544 56677788999999875432110       00001111  


Q ss_pred             CCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCCcEEEEECCCCCCcccccCCCCCCCCccccccccccCCCCcccc
Q 004685          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (737)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (737)
                            +    .....+-.|.+.+.. ..|..+-.+..|+.+++.........        .+...      ..++-...
T Consensus       176 ------f----~~~~q~EGCVvDde~-~~LyisEE~~Giw~~~a~~~~~~~~~--------~i~~~------~g~~l~~D  230 (353)
T d1h6la_         176 ------F----KMNSQTEGMAADDEY-GSLYIAEEDEAIWKFSAEPDGGSNGT--------VIDRA------DGRHLTPD  230 (353)
T ss_dssp             ------E----ECSSCEEEEEEETTT-TEEEEEETTTEEEEEESSTTSCSCCE--------EEEEC------SSSSCCSC
T ss_pred             ------c----CCCCccceEEEeCCC-CcEEEecCccceEEEEeccCCCccce--------eeecc------cCccccCC
Confidence                  1    112467889999874 68888888777766666422111000        00000      01111224


Q ss_pred             eeEEEEc--CCCC-EEEEEeC-CCeEEEEEcCCCCc
Q 004685          282 LTHVTFS--PNGE-EVLLSYS-GEHVYLMDVNHAGG  313 (737)
Q Consensus       282 i~~v~~s--p~g~-~l~~g~~-dg~v~iwd~~~~~~  313 (737)
                      +..|+.-  +++. ||++++. +++..+||......
T Consensus       231 ~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~  266 (353)
T d1h6la_         231 IEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNK  266 (353)
T ss_dssp             EEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred             ccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcc
Confidence            6666644  3333 5555555 88999999887543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=82.33  E-value=14  Score=35.80  Aligned_cols=177  Identities=10%  Similarity=0.058  Sum_probs=99.1

Q ss_pred             CCceEEEEEcC--CCCEEEEEeCCC------------------cEEEEECCCCeEEEEEcccCccceEEEEEeeCCCCCE
Q 004685           50 QGCVNAISWNS--KGSLLISGSDDT------------------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL  109 (737)
Q Consensus        50 ~~~V~~l~~s~--~g~~lasgs~dg------------------~V~vwd~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~  109 (737)
                      ...+..++..+  +-.+++.++.+.                  .+.++|.++++....+.  -......+.++++  |.+
T Consensus       131 ~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~--V~g~ld~~~~s~d--GK~  206 (459)
T d1fwxa2         131 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL--VSGNLDNCDADYE--GKW  206 (459)
T ss_dssp             CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEE--ESSCCCCEEECSS--SSE
T ss_pred             CCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEee--eCCChhccccCCC--CCE
Confidence            34567777654  456777776632                  36788999998877763  2345678999999  677


Q ss_pred             EEEEECCCc---------------EEEEecCCC------------CCC-CCCCC---CCCCceeeccCCCceeEEEEecC
Q 004685          110 VVSGAGDAE---------------VRLFNLSRF------------SGR-GLDDN---AITPSALYQCHTRRVKKLAVEVG  158 (737)
Q Consensus       110 l~sgs~dg~---------------I~iwd~~~~------------~~~-~~~~~---~~~~~~~~~~h~~~v~~l~~~p~  158 (737)
                      +++.+.+..               +.++++...            .+. ..+..   ....+..+. -......+.++|+
T Consensus       207 af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPD  285 (459)
T d1fwxa2         207 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPD  285 (459)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTT
T ss_pred             EEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCC
Confidence            777664321               333333210            000 00000   001111121 2234567899997


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCccceEEEeccCCceeeccCCCCCccceEEEEEecCCCcEEEEEeCCC
Q 004685          159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (737)
Q Consensus       159 ~~~~l~s~s~Dg~I~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~t~s~Dg  238 (737)
                      +..+++++..+.++.++|+++-.......   .+..           ..+...+.........+|+.. ++-..+-.-|.
T Consensus       286 GKyi~VaGKLs~tVSViD~~Ki~~~~~~~---~~~~-----------~~~~~e~elglgPLht~fd~~-g~aytslfids  350 (459)
T d1fwxa2         286 KKHLCVAGKLSPTVTVLDVTRFDAVFYEN---ADPR-----------SAVVAEPELGLGPLHTAFDGR-GNAYTSLFLDS  350 (459)
T ss_dssp             SSEEEEECTTSSBEEEEEGGGHHHHHHSC---C-GG-----------GGEEECCBCCSCEEEEEECTT-SEEEEEETTTT
T ss_pred             CCEEEEeCCcCCcEEEEEehhhhhhhccc---CCcc-----------ccEEeecccCcCccccccCCC-ceEEEEeeccc
Confidence            76666677789999999997532110000   0000           001111112334456788885 56777777899


Q ss_pred             cEEEEECC
Q 004685          239 FARLYDRR  246 (737)
Q Consensus       239 ~i~iwd~~  246 (737)
                      .|--|++.
T Consensus       351 ~v~kw~~~  358 (459)
T d1fwxa2         351 QVVKWNIE  358 (459)
T ss_dssp             EEEEEEHH
T ss_pred             eEEEEecc
Confidence            99999985