Citrus Sinensis ID: 004708

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730----
MRSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEAFQRSDDVTVDSAASVKNRIKVYVPMDADQRTDDSSMSQNLYPRKPSERMQFSGKQIPHRPHLSRSLANEEEWSSKARKSCGTLEKEIVMTSDEASIKNRKLPKGFIFVPVNCLPKEKRINEEASSVEPVEPDG
ccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHccccccccccccHHHHHHHHHHccccccccccccccccccEEEcccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHccccccccccccccccccccHHHccccccccccccccccccccccEEEccccccccEEcccccEEEEEEcccccccEEccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHccccEEEEccccccEEEEccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHccccccccEEEccccccHHHHccccccccccccccc
cccccccccccccHccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHcccccccccccccEccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHcccEEccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccEEEEcccccccccEEEEEccccEEEEHHHccccccccccEEHHHHcccccccccccccccccccccccccEEEcccccccccEcccccEEEEEEEEEccEEEEccccEccccccccccHHHHEHHHHHHccccEEEEcccccEEcEcHHHHHHcccEEEEEccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccHHcccccccccccccccccccEccccEEEEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHcccccccEEEEEcccccccccccccccccccccccc
mrsptdptgsedslargspmsegsaakpsdcgffescqseeaalpdqinllnvdqenpicssvdtlvpyfinakpssgffwhpyihkslqmqsgllsgnkvhksdgdteisrleasstasvccnhqgrhskcndmscksdgvNLEQVFKARTrgvlelsptdevegEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSrvavprilsdknsdslqsvsdfskehprscdicrrsetilnpilicsgckvavHLDCYRnakestgpwYCELCEELLssrssgapsvnfwekpyfvaecslcggttgafrksangqWVHAFCAEWVFestfrrgqvnpvagmeafpkgidvccicrhkhgicikcnygncqttfhptcarsagfylnvkstggnfqhkayCEKHSLEQKMKAETQKHGVEELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARlvhgripffppdvssesattslkghtdsfkscseafqrsddvtvdsaASVKNRIkvyvpmdadqrtddssmsqnlyprkpsermqfsgkqiphrphlsrslaneeewSSKARKSCGTLEKEIVMTSDeasiknrklpkgfifvpvnclpkekrineeassvepvepdg
mrsptdptgsedslargspmsegSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKArtrgvlelsptdevEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNqeidvargrrwDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSrvavprilsdknsdslqsvsdfskehprscDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAEtqkhgveelkgikqirvELERLRLLCERIikrekikrelILCSHEILAFKRDHHAARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEafqrsddvtvdsaasvknrikvyvpmdadqrtddssmsqnlyprkpsermqfsgkqiphrphlsrslaneeewsskarkscgtleKEIVMTsdeasiknrklpkgfifvPVNCLPkekrineeassvepvepdg
MRSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEaqavlaaataaaaaSSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYcelceellssrssGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQirvelerlrllceriikrekikreLILCSHEILAFKRDHHAARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEAFQRSDDVTVDSAASVKNRIKVYVPMDADQRTDDSSMSQNLYPRKPSERMQFSGKQIPHRPHLSRSLANEEEWSSKARKSCGTLEKEIVMTSDEASIKNRKLPKGFIFVPVNCLPKEKRINEEASSVEPVEPDG
*******************************************LPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQM*****************************VCC****************DGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELR*******************************************************************************************************CDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCE*****************EELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARLVHGRIPFF********************************************IKVY*****************************************************************************KLPKGFIFVPVNCL********************
****************************************************VDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSG********************************************************************EVEGEIIYFQHRLLGNAFSRKRLADNLVC**********************VN******************************AAAAASSRISSFRKDSLEESASQENLLKLS*********************************************EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRS*******FWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEK**************************************************LCSHEILAFKRDHHAARL*******************************************************************************************************************************************IFVP************************
***************************PSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREA********************************************ENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDK******************CDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARLVHGRIPFFPPDV***************FKSCSEAFQRSDDVTVDSAASVKNRIKVYVPMDAD**********NLYPRKP**********************************CGTLEKEIVMTSDEASIKNRKLPKGFIFVPVNCLPKEKRIN*************
****************************************EAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEA*STASV*********KCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGR**********VLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL*****************YFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKH*********************KQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARLVHGRIPFFPPD************************QRSDDVTVDSAASVKNRIKVYVPM********************************************************TLEKEIVMTSDEASIKNRKLPKGFIFVPVNCLP*******************
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MRSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGxxxxxxxxxxxxxxxxxxxxxEKIKRELILCSHEILAFKRDHHAARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEAFQRSDDVTVDSAASVKNRIKVYVPMDADQRTDDSSMSQNLYPRKPSERMQFSGKQIPHRPHLSRSLANEEEWSSKARKSCGTLEKEIVMTSDEASIKNRKLPKGFIFVPVNCLPKEKRINEEASSVEPVEPDG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query734 2.2.26 [Sep-21-2011]
P55201 1214 Peregrin OS=Homo sapiens yes no 0.271 0.163 0.298 9e-22
Q12311748 NuA3 HAT complex componen yes no 0.306 0.300 0.307 2e-21
O95696 1058 Bromodomain-containing pr no no 0.202 0.140 0.344 1e-20
O74759 767 Mst2 complex subunit nto1 yes no 0.217 0.208 0.316 4e-20
Q9ULD4 1205 Bromodomain and PHD finge no no 0.202 0.123 0.322 6e-20
Q7YZH1 3241 PHD finger protein rhinoc no no 0.232 0.052 0.277 6e-19
Q92613 823 Protein Jade-3 OS=Homo sa no no 0.335 0.298 0.277 2e-18
Q6IE82 823 Protein Jade-3 OS=Mus mus no no 0.392 0.349 0.254 4e-18
Q803A0 829 Protein Jade-1 OS=Danio r no no 0.215 0.190 0.280 2e-17
Q20318 1042 Protein lin-49 OS=Caenorh yes no 0.231 0.163 0.301 3e-17
>sp|P55201|BRPF1_HUMAN Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2 Back     alignment and function desciption
 Score =  105 bits (263), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 107/238 (44%), Gaps = 39/238 (16%)

Query: 287 VMSRAKETLSRVAVPRILSDKNSDSLQSVSDF---SKEHPRS-------CDICRRSE-TI 335
           +M+  ++T     +P+ + +   D L+  S F   +K  P +       C IC   E   
Sbjct: 227 IMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQN 286

Query: 336 LNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAEC 395
            N IL C  C +AVH +CY       G W C  C                 + P    +C
Sbjct: 287 SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRC----------------LQSPSRAVDC 330

Query: 396 SLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQ-VNPVAGMEAFP--KGIDVCCICR 452
           +LC    GAF+++ +G+W H  CA W+ E  F     + P+  +E  P  +    C IC+
Sbjct: 331 ALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICK 390

Query: 453 HK-HGICIKCNYGNCQTTFHPTCARSAGFYLN---VKSTGGN-----FQHKAYCEKHS 501
            +  G CI+C+  NC T FH TCA+ AG Y+    V+ TG N      +  AYC+ H+
Sbjct: 391 QRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHT 448
Component of the MOZ/MORF complex which has a histone H3 acetyltransferase activity. Positively regulates the transcription of RUNX1 and RUNX2.
Homo sapiens (taxid: 9606)
>sp|Q12311|NTO1_YEAST NuA3 HAT complex component NTO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NTO1 PE=1 SV=1 Back     alignment and function description
>sp|O95696|BRD1_HUMAN Bromodomain-containing protein 1 OS=Homo sapiens GN=BRD1 PE=1 SV=1 Back     alignment and function description
>sp|O74759|NTO1_SCHPO Mst2 complex subunit nto1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nto1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ULD4|BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2 Back     alignment and function description
>sp|Q7YZH1|RNO_DROME PHD finger protein rhinoceros OS=Drosophila melanogaster GN=rno PE=1 SV=1 Back     alignment and function description
>sp|Q92613|JADE3_HUMAN Protein Jade-3 OS=Homo sapiens GN=PHF16 PE=1 SV=1 Back     alignment and function description
>sp|Q6IE82|JADE3_MOUSE Protein Jade-3 OS=Mus musculus GN=Phf16 PE=2 SV=1 Back     alignment and function description
>sp|Q803A0|JADE1_DANRE Protein Jade-1 OS=Danio rerio GN=phf17 PE=2 SV=1 Back     alignment and function description
>sp|Q20318|LIN49_CAEEL Protein lin-49 OS=Caenorhabditis elegans GN=lin-49 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query734
302141882 1535 unnamed protein product [Vitis vinifera] 0.983 0.470 0.662 0.0
255545554 1478 phd finger protein, putative [Ricinus co 0.935 0.464 0.672 0.0
224063154 1349 predicted protein [Populus trichocarpa] 0.846 0.460 0.710 0.0
359492419614 PREDICTED: uncharacterized protein LOC10 0.814 0.973 0.698 0.0
224084824 1429 predicted protein [Populus trichocarpa] 0.892 0.458 0.631 0.0
356518511 1428 PREDICTED: uncharacterized protein LOC10 0.882 0.453 0.633 0.0
357461689 1428 Protein Jade-1 [Medicago truncatula] gi| 0.918 0.471 0.599 0.0
449445230 1431 PREDICTED: uncharacterized protein LOC10 0.865 0.443 0.603 0.0
449479909 1403 PREDICTED: uncharacterized LOC101212864 0.765 0.400 0.651 0.0
297839639 1426 PHD finger family protein [Arabidopsis l 0.843 0.434 0.562 0.0
>gi|302141882|emb|CBI19085.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/734 (66%), Positives = 575/734 (78%), Gaps = 12/734 (1%)

Query: 6    DPTGSEDSLAR-GSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVD 64
            DP    DS  +  SP+    +++PS+C   +S + EE    D   L+N+++ENP+CS VD
Sbjct: 809  DPVCISDSSGKKSSPLV--CSSEPSNCSLSDSGRIEEDCGEDN-TLVNLNKENPVCSVVD 865

Query: 65   TLVPYFINAKPSSGFFWHPYIHKSL-QMQSGLLSGNKVHKSDGDTEISRLEASSTASVCC 123
             + P  IN K  SG + HP I++ L Q QSGLL  N +       EIS +E SS   V C
Sbjct: 866  PVPPDLINTKTVSGSYIHPLIYQKLRQTQSGLLLKNTI--CSRGPEISPMETSSYVRVPC 923

Query: 124  NHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRK 183
            NHQ +HS C +M CKS+G NLEQ+ KAR  GVLELSP DEV GE+IYFQ+RLLGNA +RK
Sbjct: 924  NHQSQHSTCTEMICKSEGENLEQLVKARNTGVLELSPEDEVVGELIYFQNRLLGNAVARK 983

Query: 184  RLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAA 243
             L+D+L+CK VK+L QEI+V R ++WD+VLVNQYLCEL+EAKKQGRKERRHKEAQAVLAA
Sbjct: 984  NLSDDLICKVVKSLPQEIEVVRKQKWDSVLVNQYLCELKEAKKQGRKERRHKEAQAVLAA 1043

Query: 244  ATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRI 303
            ATAAAAASSRISSFRKD+++ESA QENLLK+++ +GRA +SSQ M RAKETLSRVA PR+
Sbjct: 1044 ATAAAAASSRISSFRKDAIDESAHQENLLKVNTSSGRAGLSSQPMPRAKETLSRVAAPRV 1103

Query: 304  LSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGP 363
             S+K SD +QS  DFSKEH RSCDICRRSETILNPIL+CS CKVAVHLDCYR+  +S GP
Sbjct: 1104 SSEKFSDFVQSNLDFSKEHGRSCDICRRSETILNPILVCSSCKVAVHLDCYRSVTDSPGP 1163

Query: 364  WYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVF 423
            WYCELCEEL+SS+ S AP+VNFWEKP F  EC LCGG  GAFRK+ + QWVHAFCAEWV 
Sbjct: 1164 WYCELCEELVSSKGSRAPAVNFWEKPAFAVECGLCGGNAGAFRKTTDDQWVHAFCAEWVL 1223

Query: 424  ESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLN 483
            ESTFR+GQVNPV GME   KG DVC IC  K+G+CIKCNYG+CQ+TFH +CARSAG Y+N
Sbjct: 1224 ESTFRKGQVNPVEGMETVSKGSDVCYICHRKNGVCIKCNYGHCQSTFHASCARSAGLYMN 1283

Query: 484  VKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQIRVELERLRLLCERIIKREK 543
            VK+  G  QHKAYCEKHSLEQ+ KAETQK G+EELK IKQIRVELERLRLLCERIIKREK
Sbjct: 1284 VKTGAGKLQHKAYCEKHSLEQRAKAETQKAGIEELKNIKQIRVELERLRLLCERIIKREK 1343

Query: 544  IKRELILCSHEILAFKRDHHA-ARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEAF 602
            +KRELILCSH+ILA KRD  A + LVH   PFFPPDVSSESATTSLKGH D +KS SEA 
Sbjct: 1344 LKRELILCSHDILASKRDSVALSVLVHS--PFFPPDVSSESATTSLKGHMDGYKSSSEAI 1401

Query: 603  QRSDDVTVDSAASVKNRIKVYVPMDADQRTDDSSMSQNLYPRKPSERMQFSGKQIPHRPH 662
            QRSDD+TVDS  S K+ IK+ V MD+DQ+TDDSS SQ+L  RKPSE   F GKQIP RP 
Sbjct: 1402 QRSDDITVDSTISGKHCIKLPVSMDSDQKTDDSSTSQHLCTRKPSEGASFCGKQIPLRPS 1461

Query: 663  --LSRSLANEEEWSSKARKSCGTLEKEIVMTSDEASIKNRKLPKGFIFVPVNCLPKEKRI 720
               SR+++ E E  SK+RK   T EKE+VMTSD+AS+KN++LPKGF++VP+ CL KEK+I
Sbjct: 1462 SVASRNVSGEVEKRSKSRKHTETFEKELVMTSDQASVKNQRLPKGFVYVPIGCLSKEKQI 1521

Query: 721  NEEASSVEPVEPDG 734
            N++A   E VE DG
Sbjct: 1522 NQDACPRESVERDG 1535

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255545554|ref|XP_002513837.1| phd finger protein, putative [Ricinus communis] gi|223546923|gb|EEF48420.1| phd finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224063154|ref|XP_002301017.1| predicted protein [Populus trichocarpa] gi|222842743|gb|EEE80290.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359492419|ref|XP_002284335.2| PREDICTED: uncharacterized protein LOC100245365 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224084824|ref|XP_002307412.1| predicted protein [Populus trichocarpa] gi|222856861|gb|EEE94408.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356518511|ref|XP_003527922.1| PREDICTED: uncharacterized protein LOC100777481 [Glycine max] Back     alignment and taxonomy information
>gi|357461689|ref|XP_003601126.1| Protein Jade-1 [Medicago truncatula] gi|355490174|gb|AES71377.1| Protein Jade-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449445230|ref|XP_004140376.1| PREDICTED: uncharacterized protein LOC101212864 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449479909|ref|XP_004155743.1| PREDICTED: uncharacterized LOC101212864 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297839639|ref|XP_002887701.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297333542|gb|EFH63960.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query734
CGD|CAL0003263 759 orf19.5910 [Candida albicans ( 0.223 0.216 0.328 8e-18
SGD|S000006235748 NTO1 "Subunit of the NuA3 hist 0.291 0.286 0.296 1.3e-17
UNIPROTKB|F1SQG0 1214 BRPF1 "Uncharacterized protein 0.292 0.177 0.287 9.6e-17
RGD|1584828 1246 Brpf1 "bromodomain and PHD fin 0.292 0.172 0.287 9.9e-17
UNIPROTKB|I3LMI5 1248 BRPF1 "Uncharacterized protein 0.292 0.172 0.287 9.9e-17
UNIPROTKB|E1BPS1 1213 BRPF1 "Uncharacterized protein 0.292 0.177 0.284 2e-16
UNIPROTKB|P55201 1214 BRPF1 "Peregrin" [Homo sapiens 0.292 0.177 0.284 2e-16
UNIPROTKB|E2RH23 1220 BRPF1 "Uncharacterized protein 0.292 0.176 0.284 2e-16
UNIPROTKB|F1P2H3 1138 BRPF1 "Uncharacterized protein 0.292 0.188 0.287 2.7e-16
POMBASE|SPBC17D11.04c 767 nto1 "histone acetyltransferas 0.217 0.208 0.295 1.2e-15
CGD|CAL0003263 orf19.5910 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
 Score = 251 (93.4 bits), Expect = 8.0e-18, P = 8.0e-18
 Identities = 62/189 (32%), Positives = 85/189 (44%)

Query:   322 HPRSCDICRRSETI-LNPILICSGCKVAVHLDCYRNAKESTGPWYXXXXXXXXXXXXXGA 380
             + + C IC  S+    N I+ C GC +AVH +CY  A    G W                
Sbjct:   222 YDQKCAICNDSDCDNANAIVFCDGCDIAVHQECYGVAFIPEGQWLCRKCM---------- 271

Query:   381 PSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRG-QVNPVAGME 439
               +N         EC  C  TTGAF++  N  W H  C  W+ E  F     + P+ GME
Sbjct:   272 --IN----KNRTTECVFCPSTTGAFKQLDNSLWSHVICGLWINELYFANPIYMEPIEGME 325

Query:   440 AFPKGID--VCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLN----VKSTGGN-FQ 492
               PK      C IC+ + G CI+C   +C   +H TCA+ AG Y++    +K    N   
Sbjct:   326 GIPKSRWKLTCYICKQRVGACIQCCNRSCFQAYHVTCAKRAGLYMSMTQGIKGAISNKLT 385

Query:   493 HKAYCEKHS 501
              K+YCE+HS
Sbjct:   386 LKSYCERHS 394
GO:0033100 "NuA3 histone acetyltransferase complex" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0004402 "histone acetyltransferase activity" evidence=IEA
GO:0035064 "methylated histone residue binding" evidence=IEA
GO:0016573 "histone acetylation" evidence=IEA
SGD|S000006235 NTO1 "Subunit of the NuA3 histone acetyltransferase complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQG0 BRPF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1584828 Brpf1 "bromodomain and PHD finger containing, 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LMI5 BRPF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPS1 BRPF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P55201 BRPF1 "Peregrin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RH23 BRPF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2H3 BRPF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
POMBASE|SPBC17D11.04c nto1 "histone acetyltransferase complex subunit Nto1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_II000416
hypothetical protein (1349 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query734
pfam13832109 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like doma 1e-41
COG5141669 COG5141, COG5141, PHD zinc finger-containing prote 5e-27
pfam1377189 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domai 1e-14
pfam1383133 pfam13831, PHD_2, PHD-finger 7e-11
pfam0062851 pfam00628, PHD, PHD-finger 6e-05
smart0024947 smart00249, PHD, PHD zinc finger 8e-05
>gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain Back     alignment and domain information 
 Score =  146 bits (371), Expect = 1e-41
 Identities = 48/110 (43%), Positives = 64/110 (58%), Gaps = 3/110 (2%)

Query: 393 AECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGI--DVCCI 450
           AEC LC    GA +K+ +G+WVH  CA +V E  F  G       +   PK      CC 
Sbjct: 1   AECCLCPLRGGALKKTTDGRWVHVLCAIFVPEVRFGNGATMEPIDVSRIPKERWKLKCCF 60

Query: 451 CRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKH 500
           C+ + G CI+C+YG CQT+FH TCAR+AG Y+ ++    N Q  AYC+KH
Sbjct: 61  CKKRSGACIQCSYGRCQTSFHVTCARAAGVYMEIEDW-PNLQVIAYCQKH 109

Length = 109
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|222368 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domain Back     alignment and domain information
>gnl|CDD|222406 pfam13831, PHD_2, PHD-finger Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 734
KOG0954 893 consensus PHD finger protein [General function pre 100.0
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 100.0
KOG0956 900 consensus PHD finger protein AF10 [General functio 100.0
COG5141669 PHD zinc finger-containing protein [General functi 100.0
KOG0957 707 consensus PHD finger protein [General function pre 100.0
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 99.9
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 99.56
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 99.05
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 99.02
KOG0954893 consensus PHD finger protein [General function pre 98.61
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 97.82
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.69
KOG1512381 consensus PHD Zn-finger protein [General function 97.35
KOG1244336 consensus Predicted transcription factor Requiem/N 97.24
KOG1084375 consensus Transcription factor TCF20 [Transcriptio 97.17
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.15
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.78
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 96.62
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 96.46
KOG0825 1134 consensus PHD Zn-finger protein [General function 95.8
KOG4299613 consensus PHD Zn-finger protein [General function 95.52
KOG1973274 consensus Chromatin remodeling protein, contains P 94.82
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 93.98
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 92.06
KOG0383 696 consensus Predicted helicase [General function pre 91.01
KOG0957707 consensus PHD finger protein [General function pre 89.4
PF10198131 Ada3: Histone acetyltransferases subunit 3; InterP 89.4
KOG1244336 consensus Predicted transcription factor Requiem/N 88.66
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 88.52
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 88.31
KOG1512381 consensus PHD Zn-finger protein [General function 82.7
PF02318118 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 82.05
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 81.05
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1e-37  Score=349.37  Aligned_cols=166  Identities=32%  Similarity=0.788  Sum_probs=149.8

Q ss_pred             CCCCcccccCCCCC-CCCCEEEecCCCceeccccccCCCCCCCccccccchhhccCCCCCCCCCCccCCCCcccccccCC
Q 004708          321 EHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCG  399 (734)
Q Consensus       321 e~~~~CsVC~~~E~-~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~~~~~~~s~~~~vN~~~~p~~~~~C~LCp  399 (734)
                      +++..|+||+.++. ..|+|||||+|++.|||.|||+..+|+++|||+.|....                  .+.|+|||
T Consensus       269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~------------------~ppCvLCP  330 (893)
T KOG0954|consen  269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGI------------------EPPCVLCP  330 (893)
T ss_pred             cccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccC------------------CCCeeecc
Confidence            36789999999886 589999999999999999999999999999999999852                  66899999


Q ss_pred             CCCCCcccccCC-ceeeeecccccceeeeccC-ccccccccccccCC--CccccccCCCCceeeecCCCCCCcccchhcc
Q 004708          400 GTTGAFRKSANG-QWVHAFCAEWVFESTFRRG-QVNPVAGMEAFPKG--IDVCCICRHKHGICIKCNYGNCQTTFHPTCA  475 (734)
Q Consensus       400 ~~gGaLK~T~~g-~WVHV~CALW~PEv~f~n~-~l~pV~GIe~I~r~--k~~CsiC~~~~GA~IqCs~~~C~~sFH~tCA  475 (734)
                      .+||+||.+.+| +|+||.||||+|||+|.+. .|+||..+..|+..  .+.|.+|+.+.||||+|++++|.++||++||
T Consensus       331 kkGGamK~~~sgT~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fHv~CA  410 (893)
T KOG0954|consen  331 KKGGAMKPTKSGTKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFHVTCA  410 (893)
T ss_pred             ccCCcccccCCCCeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhccchhh
Confidence            999999999877 8999999999999999885 79999999999876  5899999999999999999999999999999


Q ss_pred             ccCCceEEEee-CCCceeeeEeCCCCChhh
Q 004708          476 RSAGFYLNVKS-TGGNFQHKAYCEKHSLEQ  504 (734)
Q Consensus       476 ~~aG~~m~~k~-~~g~~~~~~yC~kHs~~q  504 (734)
                      +.+|..|.+-. .++...++.||.+|+..+
T Consensus       411 ~~aG~~~~~~~~~~D~v~~~s~c~khs~~~  440 (893)
T KOG0954|consen  411 FEAGLEMKTILKENDEVKFKSYCSKHSDHR  440 (893)
T ss_pred             hhcCCeeeeeeccCCchhheeecccccccc
Confidence            99999998643 345667899999998654

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG1084 consensus Transcription factor TCF20 [Transcription] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes [] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query734
2lq6_A87 Solution Structure Of Brd1 Phd2 Finger Length = 87 5e-05
>pdb|2LQ6|A Chain A, Solution Structure Of Brd1 Phd2 Finger Length = 87 Back     alignment and structure 
Iteration: 1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 448 CCICRHKH-GICIKCNYGNCQTTFHPTCARSAGFYLNVKS----TGG----NFQHKAYCE 498
           C +C+ K  G  I+C+  NC T FH TCA+ AG Y+ ++     TGG    + +  AYC+
Sbjct: 20  CYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCD 79
Query: 499 KHS 501
            H+
Sbjct: 80  VHT 82

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query734
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 3e-10
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 3e-09
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 1e-08
2yt5_A66 Metal-response element-binding transcription facto 1e-07
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 3e-04
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 5e-04
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 6e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
 Score = 56.0 bits (135), Expect = 3e-10
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 326 CDICRRSETI-LNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 371
           C IC   E+   N IL C  C +AVH +CY       G W C  C +
Sbjct: 19  CSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query734
2lq6_A87 Bromodomain-containing protein 1; PHD finger, meta 99.2
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 99.01
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 98.86
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 98.71
2yt5_A66 Metal-response element-binding transcription facto 98.7
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 98.51
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 98.48
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 98.44
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 98.41
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 98.39
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 98.34
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 98.32
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.3
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 98.3
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 98.27
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 98.23
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 98.22
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 98.09
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 98.09
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 97.99
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 97.95
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 97.91
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 97.91
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 97.84
2k16_A75 Transcription initiation factor TFIID subunit 3; p 97.83
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 97.82
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 97.81
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 97.79
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 97.79
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.75
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 97.66
1weu_A91 Inhibitor of growth family, member 4; structural g 97.64
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 97.59
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 97.55
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 97.44
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 97.44
1we9_A64 PHD finger family protein; structural genomics, PH 97.34
3o70_A68 PHD finger protein 13; PHF13, structural genomics 97.06
1x4i_A70 Inhibitor of growth protein 3; structural genomics 97.04
1wee_A72 PHD finger family protein; structural genomics, PH 97.03
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 97.02
1wew_A78 DNA-binding family protein; structural genomics, P 96.84
1wem_A76 Death associated transcription factor 1; structura 96.73
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 96.72
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 96.62
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 96.56
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 96.5
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 96.48
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 96.24
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 95.95
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 95.8
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 94.77
3kv5_D488 JMJC domain-containing histone demethylation prote 94.02
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 93.66
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 91.43
1we9_A64 PHD finger family protein; structural genomics, PH 90.13
1wew_A78 DNA-binding family protein; structural genomics, P 90.06
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 88.88
1wem_A76 Death associated transcription factor 1; structura 88.44
1wil_A89 KIAA1045 protein; ring finger domain, structural g 88.1
2zet_C153 Melanophilin; complex, GTP-binding protein, GTPase 87.05
1weu_A91 Inhibitor of growth family, member 4; structural g 86.69
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 86.65
3o70_A68 PHD finger protein 13; PHF13, structural genomics 86.57
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 86.54
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 86.45
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 86.32
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 86.15
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 85.89
2k16_A75 Transcription initiation factor TFIID subunit 3; p 85.85
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 85.36
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 85.31
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 85.13
1wee_A72 PHD finger family protein; structural genomics, PH 85.02
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 84.93
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 84.33
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 84.32
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 83.94
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 82.61
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 82.59
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 81.6
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 81.33
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 81.05
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
Probab=99.20  E-value=5.5e-12  Score=111.04  Aligned_cols=64  Identities=36%  Similarity=0.825  Sum_probs=53.3

Q ss_pred             cccCC--CccccccCCC-CceeeecCCCCCCcccchhccccCCceEEEeeC-----C---CceeeeEeCCCCChh
Q 004708          440 AFPKG--IDVCCICRHK-HGICIKCNYGNCQTTFHPTCARSAGFYLNVKST-----G---GNFQHKAYCEKHSLE  503 (734)
Q Consensus       440 ~I~r~--k~~CsiC~~~-~GA~IqCs~~~C~~sFH~tCA~~aG~~m~~k~~-----~---g~~~~~~yC~kHs~~  503 (734)
                      +|++.  +++|++|+++ .||+|+|+.++|.++||++||+.+|+.|++...     +   +.+++.+||++|++.
T Consensus        10 NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPp   84 (87)
T 2lq6_A           10 NIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPP   84 (87)
T ss_dssp             CCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSS
T ss_pred             CCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCCc
Confidence            46655  6899999986 599999999999999999999999999987521     1   234678999999974
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 734
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 3e-06
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 6e-05
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 6e-05
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 2e-04
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 4e-04
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 5e-04
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 316 SDFSKEHPRSCDICRRSETI-LNPILICSGCKVAVHLDCYR------NAKESTGPWYCEL 368
            DF+ E   +C +CR+      N ++ C  C    H DC++         +    WYC  
Sbjct: 9   DDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCAR 68

Query: 369 CEELLSSRSSGAPS 382
           C   +   +     
Sbjct: 69  CTRQMKRMAQKNQK 82
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query734
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.37
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.17
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 98.09
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 97.94
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.94
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.73
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.66
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 97.54
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.43
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 97.07
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 96.69
d1wema_76 Death associated transcription factor 1, Datf1 (DI 88.07
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 87.92
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 87.85
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 87.15
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 87.01
d1zbdb_124 Effector domain of rabphilin-3a {Rat (Rattus norve 85.78
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 84.37
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 81.02
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 80.95
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=4.5e-08  Score=83.33  Aligned_cols=57  Identities=26%  Similarity=0.666  Sum_probs=46.0

Q ss_pred             CCCCCCCcccccCCCCC-CCCCEEEecCCCceeccccccCC------CCCCCccccccchhhcc
Q 004708          318 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNA------KESTGPWYCELCEELLS  374 (734)
Q Consensus       318 ~~ke~~~~CsVC~~~E~-~~N~IV~Cd~C~iaVHq~CYGv~------~ip~g~WlCd~C~~~~~  374 (734)
                      +..+..++|.||+.... ..+.||+|++|...||+.|+++.      .++++.|+|..|.....
T Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~   74 (88)
T d1weva_          11 FAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK   74 (88)
T ss_dssp             CHHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred             ccCcCcCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHh
Confidence            44455688999997554 46789999999999999999964      35678999999987644
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure