Citrus Sinensis ID: 004769

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-
MSEGNSMASENGTDLSQDDTGTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYRLYNLELEEDFEEEWSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVAEIVEFNDRAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEELLMAPQYASLLVDEGCFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLSTDNCFQIPDQYLPIRWRNVTSASTNPLRTTTRDRSEKIQLLESMASALVSESLETEERLDVACEQVAMVLNHVKDLPRPIHGMDDIAYACPSHSLILPEVEDTDGIVQSITVGNSHESFTLGKLKERRPRDGVDVSRKRRHCSEPCCRHFGHDASSCPIMGSDTLNAELLGYL
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEccccccccccccEEEEEEEEcccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHccccHHHHHHHcccEEEEEcccccccccccccEEEEEccccccEEEEEEEccccccccHHHHHHHHHHHHcccccEEEEHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHcccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEcccccccccccccHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHcccEEEEEccEcEcccccEEEEEEEEEccccccccccccccccccccccccccccEEEEEEEEccccccEEEEEEEEcccccccccHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcccHHHHHHHcccEEEEEccEEcccccccEEEEEEEcccccEEEEEHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHEEcccccEEEEEEEEcccEEEEEEcccccEEEEEEHHEEccccHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccHHHcccc
msegnsmasengtdlsqddtgtieenpeetilsqqtsvnlvpfigqrfvsqDAAYEFYCSFAKQCgfsirrhrtrgkdgvgrgvtrrdftchrggfpqmkpsddgkmqrnrkssrcgcQAYMRIVKrvdfdvpewhvtgfsnvhnhellklnevrllpaycsitpddkTRICMFAKAGMSVRQMLRLMELEkgvklgclpfteIDVRNLLQSFRNVNRDYDAIDLIAMCKKmkdknpnfqydfkmdghnRLEHIAWSYASSVQLYEAFGDALVfdtthrldsydMLFGIWVgldnhgmacFFGCVLLRDENMQSFSWSLKEAVAVEMPETKHAVYIWHILAKlsdslptflgssyddWKAEFYRLYNLELEEDFEEEWSKMVNKYGLREYKHITSLYALRTFWALPFLRhyffagllspcQSEAINAFIQRILSAQSQLDRFVERVAEIVEFNDRAATKQKMQRKLQKIClktgspieshaatvltpyafGKLQEELLMAPQYASllvdegcfqvkhhtetdggckviwipcqehiscschqfefsgiLCRHVLrvlstdncfqipdqylpirwrnvtsastnplrtttrDRSEKIQLLESMASALVSESLETEERLDVACEQVAMVLNHvkdlprpihgmddiayacpshslilpevedtdgivqsitvgnshesftlgklkerrprdgvdvsrkrrhcsepccrhfghdasscpimgsdtLNAELLGYL
msegnsmasengtdlsqddTGTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKqcgfsirrhrtrgkdgvgrgvtrrdftchrggfpqmkpsddgkmqrnrKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYRLYNLELEEDFEEEWSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVAEIVEfndraatkqkmQRKLQKICLKtgspieshaATVLTPYAFGKLQEELLMAPQYASLLVDEGCFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLSTDNCFQIPDqylpirwrnvtsastnplrtttrdrseKIQLLESMASALVSESLETEERLDVACEQVAMVLNHVKDLPRPIHGMDDIAYACPSHSLILPEVEDTDGIVQSItvgnshesftlgklkerrprdgvdvsrkrrhcsepccrhfghdasscpimgSDTLNAELLGYL
MSEGNSMASENGTDLSQDDTGTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYRLYNleleedfeeeWSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVAEIVEFNDRAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEELLMAPQYASLLVDEGCFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLSTDNCFQIPDQYLPIRWRNVTSASTNPLRTTTRDRSEKIQLLESMASALVSESLETEERLDVACEQVAMVLNHVKDLPRPIHGMDDIAYACPSHSLILPEVEDTDGIVQSITVGNSHESFTLGKLKERRPRDGVDVSRKRRHCSEPCCRHFGHDASSCPIMGSDTLNAELLGYL
***********************************TSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCH***********************CGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYRLYNLELEEDFEEEWSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVAEIVEFNDRAATK**MQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEELLMAPQYASLLVDEGCFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLSTDNCFQIPDQYLPIRWRNVT*************************************RLDVACEQVAMVLNHVKDLPRPIHGMDDIAYACPSHSLILPEVEDTDGIVQSITVGN******************************PCCRHFGHDA**CPI**************
**************************************NLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTR*****GRGVTRRDFTCHRGGFPQM**********NRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYRLYNLELEEDFEEEWSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVAEIVEFNDRAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEELLMAPQYASLLVDEGCFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLSTDNCFQIPDQYLPIRWRNVTS***************KIQLLESMASALVSESLETEERLDVACEQVAMVLNH************************************************************************PCCRHFGHDASSCPIMGS*TLN*ELLGYL
**********************IEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQMK***************CGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYRLYNLELEEDFEEEWSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVAEIVEFNDRA**********QKICLKTGSPIESHAATVLTPYAFGKLQEELLMAPQYASLLVDEGCFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLSTDNCFQIPDQYLPIRWRNVTSASTNPLRTTTRDRSEKIQLLESMASALVSESLETEERLDVACEQVAMVLNHVKDLPRPIHGMDDIAYACPSHSLILPEVEDTDGIVQSITVGNSHESFTLGKLK****************CSEPCCRHFGHDASSCPIMGSDTLNAELLGYL
*************************************VNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGG*******************RCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYRLYNLELEEDFEEEWSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVAEIVEFNDRAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEELLMAPQYASLLVDEGCFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLSTDNCFQIPDQYLPIRWRNVTSAST*****TTRDRSEKIQLLESMASALVSESLETEERLDVACEQVAMVLNHVKDLPRP**************************************************************************ASSCPI*****LNA*****L
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MSEGNSMASENGTDLSQDDTGTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYRLYNLELEEDFEEEWSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVAEIVEFNDRAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEELLMAPQYASLLVDEGCFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLSTDNCFQIPDQYLPIRWRNVTSASTNPLRTTTRDRSEKIQLLESMASALVSESLETEERLDVACEQVAMVLNHVKDLPRPIHGMDDIAYACPSHSLILPEVEDTDGIVQSITVGNSHESFTLGKLKERRPRDGVDVSRKRRHCSEPCCRHFGHDASSCPIMGSDTLNAELLGYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query731 2.2.26 [Sep-21-2011]
Q9SY66680 Protein FAR1-RELATED SEQU yes no 0.861 0.926 0.547 0.0
Q9LKR4685 Putative protein FAR1-REL no no 0.826 0.881 0.371 1e-127
Q9SZL8788 Protein FAR1-RELATED SEQU no no 0.733 0.680 0.297 2e-66
Q9LIE5839 Protein FAR-RED ELONGATED no no 0.730 0.636 0.247 1e-50
Q6NQJ7732 Protein FAR1-RELATED SEQU no no 0.778 0.777 0.256 7e-48
Q9SWG3827 Protein FAR-RED IMPAIRED no no 0.819 0.724 0.247 8e-47
Q9ZVC9 851 Protein FAR1-RELATED SEQU no no 0.734 0.631 0.261 2e-46
Q9M8J3764 Protein FAR1-RELATED SEQU no no 0.656 0.628 0.261 7e-41
Q3E7I5788 Protein FAR1-RELATED SEQU no no 0.659 0.611 0.253 5e-38
Q9S793725 Protein FAR1-RELATED SEQU no no 0.786 0.793 0.253 3e-36
>sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1 Back     alignment and function desciption
 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/654 (54%), Positives = 483/654 (73%), Gaps = 24/654 (3%)

Query: 15  LSQDDTGTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRT 74
           LS DD  + EE+P++  LS +   N +P++GQ F++ D AYEFY +FAK+CGFSIRRHRT
Sbjct: 21  LSLDDASSTEESPDDNNLSLEAVHNAIPYLGQIFLTHDTAYEFYSTFAKRCGFSIRRHRT 80

Query: 75  RGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPE 134
            GKDGVG+G+TRR F CHR G   +K   +GK QRNR+SSRCGCQAY+RI K  +    E
Sbjct: 81  EGKDGVGKGLTRRYFVCHRAGNTPIKTLSEGKPQRNRRSSRCGCQAYLRISKLTELGSTE 140

Query: 135 WHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGV 194
           W VTGF+N HNHELL+ N+VR LPAY SI+  DK+RI MF+K G+SV+QM+RL+ELEK V
Sbjct: 141 WRVTGFANHHNHELLEPNQVRFLPAYRSISDADKSRILMFSKTGISVQQMMRLLELEKCV 200

Query: 195 KLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHI 254
           + G LPFTE DVRNLLQSF+ ++ + + ID + MC+ +K+K+PNF+++F +D +++LE+I
Sbjct: 201 EPGFLPFTEKDVRNLLQSFKKLDPEDENIDFLRMCQSIKEKDPNFKFEFTLDANDKLENI 260

Query: 255 AWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQS 314
           AWSYASS+Q YE FGDA+VFDTTHRL + +M  GIWVG++N+G+ CFFGCVLLRDEN++S
Sbjct: 261 AWSYASSIQSYELFGDAVVFDTTHRLSAVEMPLGIWVGVNNYGVPCFFGCVLLRDENLRS 320

Query: 315 FSWS-----------------------LKEAVAVEMPETKHAVYIWHILAKLSDSLPTFL 351
           +SW+                       LKEA+A EMP TKHA+ IW ++ K        L
Sbjct: 321 WSWALQAFTGFMNGKAPQTILTDHNMCLKEAIAGEMPATKHALCIWMVVGKFPSWFNAGL 380

Query: 352 GSSYDDWKAEFYRLYNLELEEDFEEEWSKMVNKYGLREYKHITSLYALRTFWALPFLRHY 411
           G  Y+DWKAEFYRLY+LE  E+FE  W  MVN +GL   +HI +LYA R+ W+LP+LR +
Sbjct: 381 GERYNDWKAEFYRLYHLESVEEFELGWRDMVNSFGLHTNRHINNLYASRSLWSLPYLRSH 440

Query: 412 FFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVAEIVEFNDRAATKQKMQRKLQKICL 471
           F AG+    +S+AINAFIQR LSAQ++L  FVE+VA +V+F D+A  +Q MQ+ LQ I L
Sbjct: 441 FLAGMTLTGRSKAINAFIQRFLSAQTRLAHFVEQVAVVVDFKDQATEQQTMQQNLQNISL 500

Query: 472 KTGSPIESHAATVLTPYAFGKLQEELLMAPQYASLLVDEGCFQVKHHTETDGGCKVIWIP 531
           KTG+P+ESHAA+VLTP+AF KLQE+L++A  YAS  +DEG + V+HHT+ DGG KV W+P
Sbjct: 501 KTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFQMDEG-YLVRHHTKLDGGRKVYWVP 559

Query: 532 CQEHISCSCHQFEFSGILCRHVLRVLSTDNCFQIPDQYLPIRWRNVTSASTNPLRTTTRD 591
            +  ISCSC  FEFSG LCRH LRVLST NCFQ+PD+YLP+RWR ++++ +   R+   D
Sbjct: 560 QEGIISCSCQLFEFSGFLCRHALRVLSTGNCFQVPDRYLPLRWRRISTSFSKTFRSNAED 619

Query: 592 RSEKIQLLESMASALVSESLETEERLDVACEQVAMVLNHVKDLPRPIHGMDDIA 645
             E++QLL+++ S LVSES +++ERLD+A EQ +++L+ +++ P     + DI+
Sbjct: 620 HGERVQLLQNLVSTLVSESAKSKERLDIATEQTSILLSRIREQPVSSLAIRDIS 673
Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LKR4|FRS10_ARATH Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2 Back     alignment and function description
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1 Back     alignment and function description
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2 Back     alignment and function description
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8J3|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1 Back     alignment and function description
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1 Back     alignment and function description
>sp|Q9S793|FRS8_ARATH Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query731
255556300749 conserved hypothetical protein [Ricinus 0.989 0.965 0.747 0.0
356532535758 PREDICTED: protein FAR1-RELATED SEQUENCE 1.0 0.964 0.744 0.0
356558145 853 PREDICTED: protein FAR1-RELATED SEQUENCE 1.0 0.856 0.737 0.0
225437495758 PREDICTED: protein FAR1-RELATED SEQUENCE 0.990 0.955 0.708 0.0
225431875709 PREDICTED: protein FAR1-RELATED SEQUENCE 0.932 0.961 0.703 0.0
296083285746 unnamed protein product [Vitis vinifera] 0.932 0.914 0.703 0.0
147778791775 hypothetical protein VITISV_028607 [Viti 0.989 0.932 0.664 0.0
224099207646 predicted protein [Populus trichocarpa] 0.842 0.953 0.725 0.0
224068442649 predicted protein [Populus trichocarpa] 0.854 0.963 0.715 0.0
147795787671 hypothetical protein VITISV_037071 [Viti 0.860 0.937 0.584 0.0
>gi|255556300|ref|XP_002519184.1| conserved hypothetical protein [Ricinus communis] gi|223541499|gb|EEF43048.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1205 bits (3118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/757 (74%), Positives = 644/757 (85%), Gaps = 34/757 (4%)

Query: 1   MSEGNSM---ASENGTDLSQDDTGTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEF 57
           MSEG SM   +SENGTD+SQDDTG +EE PE+TILS+QTSVNLVPFIGQRFVSQDAAYEF
Sbjct: 1   MSEGTSMVMESSENGTDISQDDTGNVEEIPEDTILSRQTSVNLVPFIGQRFVSQDAAYEF 60

Query: 58  YCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCG 117
           YCSFAKQCGFSIRRHRTRGKDG+GRGVTRRDFTCHRGGFPQMKPS+DGKMQRNRKSSRCG
Sbjct: 61  YCSFAKQCGFSIRRHRTRGKDGIGRGVTRRDFTCHRGGFPQMKPSEDGKMQRNRKSSRCG 120

Query: 118 CQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKA 177
           CQAYMRIVKR DFDVPEW VTGFSN+HNHELLK NEV LLPAYC+++PDDKTRICMFAKA
Sbjct: 121 CQAYMRIVKRADFDVPEWRVTGFSNIHNHELLKSNEVHLLPAYCTMSPDDKTRICMFAKA 180

Query: 178 GMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIAMCKKMKDKNP 237
           GMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRN+NRD DAIDLIAMCKK+KD++ 
Sbjct: 181 GMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNINRDNDAIDLIAMCKKLKDEDH 240

Query: 238 NFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHG 297
           NF+YDFK+DG+NRLEHIAWSYASS+QLYEAFGDA+VFDTTHRLD+YDM+ GIW+GLDNHG
Sbjct: 241 NFKYDFKIDGNNRLEHIAWSYASSIQLYEAFGDAVVFDTTHRLDAYDMILGIWLGLDNHG 300

Query: 298 MACFFGCVLLRDENMQSFSWS-----------------------LKEAVAVEMPETKHAV 334
           M CFFGCVLLRDENMQSFSW+                       LKEA+A+E+PETKHA 
Sbjct: 301 MTCFFGCVLLRDENMQSFSWALKAFMDFMNGKAPHTIMTDQNMWLKEAIAIEIPETKHAF 360

Query: 335 YIWHILAKLSDSLPTFLGSSYDDWKAEFYRLYNLELEEDFEEEWSKMVNKYGLREYKHIT 394
            IWHILAK SD     L S YDDWKAEF RLYNLE  EDFEE W +MV+KYGL   KHI 
Sbjct: 361 CIWHILAKFSDWFSLLLESCYDDWKAEFLRLYNLEFVEDFEEGWKEMVDKYGLHANKHIA 420

Query: 395 SLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVAEIVEFND 454
           SLYALRTFWAL +LRHYFFAG+++ CQSE+INAFIQR LSAQSQL+RF+ERVA+IV+ N+
Sbjct: 421 SLYALRTFWALSYLRHYFFAGMMNTCQSESINAFIQRFLSAQSQLERFIERVADIVDLNN 480

Query: 455 RAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFGKLQEELLMAPQYASLLVDEGCFQ 514
            + +K +  RKLQK+ LKTGSPIESHAA++LTPYAF KLQEEL++APQYAS  +D+  +Q
Sbjct: 481 HSGSKAETHRKLQKVYLKTGSPIESHAASILTPYAFNKLQEELVLAPQYASFQIDDYGYQ 540

Query: 515 VKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGILCRHVLRVLSTDNCFQIPDQYLPIRW 574
           V+HHT+  GGCKVIW PCQEHISCSC +FEF GILCRHVLRVLS +NCF IPDQY+P RW
Sbjct: 541 VRHHTQISGGCKVIWDPCQEHISCSCSRFEFLGILCRHVLRVLSNNNCFHIPDQYMPARW 600

Query: 575 RNVTSASTNPLRTTTRDRSEKIQLLESMASALVSESLETEERLDVACEQVAMVLNHVKDL 634
           R+V       L +T R +S++IQLLESMAS LV+E++ETEERL+VACE++AMVL+ +KDL
Sbjct: 601 RDVD------LSSTARTQSDRIQLLESMASTLVTEAVETEERLNVACEEIAMVLSRIKDL 654

Query: 635 PRPIHGMDDIAYACPSHSLILPEVEDTDGIVQSITVGNSHESFTLGKLKERRPRDGVDVS 694
           PR  H  D+ AY C S SLILP+VED DG+VQ++ +GN H+S +LGKLKERRPRDG D+S
Sbjct: 655 PRQTH--DENAYNCASDSLILPDVEDADGVVQTLAIGNPHDSISLGKLKERRPRDGTDIS 712

Query: 695 RKRRHCSEPCCRHFGHDASSCPIMGSDTLNAELLGYL 731
           RKRRHCS PCC  FGHD S CPIMGSD LN   LGY+
Sbjct: 713 RKRRHCSGPCCGQFGHDVSDCPIMGSDHLNGAALGYI 749

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356532535|ref|XP_003534827.1| PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Glycine max] Back     alignment and taxonomy information
>gi|356558145|ref|XP_003547368.1| PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Glycine max] Back     alignment and taxonomy information
>gi|225437495|ref|XP_002269765.1| PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225431875|ref|XP_002271698.1| PREDICTED: protein FAR1-RELATED SEQUENCE 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083285|emb|CBI22921.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147778791|emb|CAN75953.1| hypothetical protein VITISV_028607 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224099207|ref|XP_002311403.1| predicted protein [Populus trichocarpa] gi|222851223|gb|EEE88770.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224068442|ref|XP_002302746.1| predicted protein [Populus trichocarpa] gi|222844472|gb|EEE82019.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147795787|emb|CAN72074.1| hypothetical protein VITISV_037071 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query731
TAIR|locus:2012828680 FRS11 "FAR1-related sequence 1 0.418 0.45 0.598 2.2e-198
TAIR|locus:2182778685 FRS10 "FAR1-related sequence 1 0.404 0.432 0.430 6.8e-117
TAIR|locus:2121060788 FRS5 "FAR1-related sequence 5" 0.376 0.348 0.312 1.1e-58
TAIR|locus:2014639732 FRS4 "FAR1-related sequence 4" 0.361 0.360 0.311 5e-45
TAIR|locus:2129665827 FAR1 "FAR-RED IMPAIRED RESPONS 0.480 0.424 0.256 3.2e-44
TAIR|locus:2090394839 FHY3 "far-red elongated hypoco 0.848 0.738 0.250 8.9e-43
TAIR|locus:2144930788 FRS12 "FAR1-related sequence 1 0.389 0.361 0.262 6.1e-32
TAIR|locus:2016259725 FRS8 "FAR1-related sequence 8" 0.391 0.394 0.271 6.4e-32
TAIR|locus:2121003545 FRS9 "FAR1-related sequence 9" 0.269 0.361 0.288 1.9e-28
TAIR|locus:2035144703 FRS6 "FAR1-related sequence 6" 0.435 0.452 0.237 3.9e-27
TAIR|locus:2012828 FRS11 "FAR1-related sequence 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1017 (363.1 bits), Expect = 2.2e-198, Sum P(2) = 2.2e-198
 Identities = 183/306 (59%), Positives = 244/306 (79%)

Query:    15 LSQDDTGTIEENPEETILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRT 74
             LS DD  + EE+P++  LS +   N +P++GQ F++ D AYEFY +FAK+CGFSIRRHRT
Sbjct:    21 LSLDDASSTEESPDDNNLSLEAVHNAIPYLGQIFLTHDTAYEFYSTFAKRCGFSIRRHRT 80

Query:    75 RGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPE 134
              GKDGVG+G+TRR F CHR G   +K   +GK QRNR+SSRCGCQAY+RI K  +    E
Sbjct:    81 EGKDGVGKGLTRRYFVCHRAGNTPIKTLSEGKPQRNRRSSRCGCQAYLRISKLTELGSTE 140

Query:   135 WHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGV 194
             W VTGF+N HNHELL+ N+VR LPAY SI+  DK+RI MF+K G+SV+QM+RL+ELEK V
Sbjct:   141 WRVTGFANHHNHELLEPNQVRFLPAYRSISDADKSRILMFSKTGISVQQMMRLLELEKCV 200

Query:   195 KLGCLPFTEIDVRNLLQSFRNVNRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHI 254
             + G LPFTE DVRNLLQSF+ ++ + + ID + MC+ +K+K+PNF+++F +D +++LE+I
Sbjct:   201 EPGFLPFTEKDVRNLLQSFKKLDPEDENIDFLRMCQSIKEKDPNFKFEFTLDANDKLENI 260

Query:   255 AWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQS 314
             AWSYASS+Q YE FGDA+VFDTTHRL + +M  GIWVG++N+G+ CFFGCVLLRDEN++S
Sbjct:   261 AWSYASSIQSYELFGDAVVFDTTHRLSAVEMPLGIWVGVNNYGVPCFFGCVLLRDENLRS 320

Query:   315 FSWSLK 320
             +SW+L+
Sbjct:   321 WSWALQ 326
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009639 "response to red or far red light" evidence=ISS
TAIR|locus:2182778 FRS10 "FAR1-related sequence 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129665 FAR1 "FAR-RED IMPAIRED RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090394 FHY3 "far-red elongated hypocotyls 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144930 FRS12 "FAR1-related sequence 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016259 FRS8 "FAR1-related sequence 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121003 FRS9 "FAR1-related sequence 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SY66FRS11_ARATHNo assigned EC number0.54740.86180.9264yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033099001
SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (709 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query731
PLN03097846 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY 2e-59
pfam0310190 pfam03101, FAR1, FAR1 DNA-binding domain 3e-22
pfam1055188 pfam10551, MULE, MULE transposase domain 9e-06
pfam0443438 pfam04434, SWIM, SWIM zinc finger 1e-04
smart0057528 smart00575, ZnF_PMZ, plant mutator transposase zin 1e-04
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
 Score =  215 bits (549), Expect = 2e-59
 Identities = 161/629 (25%), Positives = 272/629 (43%), Gaps = 93/629 (14%)

Query: 5   NSMASENGTDLSQDDTGTIEE--------------NPEETILSQQTSVNLVPFIGQRFVS 50
           ++M SE        + G + +              +P   ++  +   NL P  G  F S
Sbjct: 23  DNMLSEVKLHNGDMEIGNVVDVAEEVLSIDGGDMNSPTGELVEFKEDTNLEPLSGMEFES 82

Query: 51  QDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGF----------PQMK 100
              AY FY  +A+  GF+     +R +    R      F C R G           P+ +
Sbjct: 83  HGEAYSFYQEYARSMGFNTAIQNSR-RSKTSREFIDAKFACSRYGTKREYDKSFNRPRAR 141

Query: 101 PS--DDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLP 158
            +  D       R  ++  C+A M + +R D    +W +  F   HNHELL    V    
Sbjct: 142 QTKQDPENGTGRRSCAKTDCKASMHVKRRPD---GKWVIHSFVKEHNHELLPAQAV---- 194

Query: 159 AYCSITPDDKTRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVNR 218
                   ++TR  M+A       +   ++ L+             D ++     RN+  
Sbjct: 195 -------SEQTRK-MYAAMARQFAEYKNVVGLKN------------DSKSSFDKGRNLGL 234

Query: 219 DY-DAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTT 277
           +  D   L+    +M++ N NF Y   +    RL+++ W  A S   Y  F D + FDTT
Sbjct: 235 EAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTT 294

Query: 278 HRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSW-------------------- 317
           +  + Y M   ++VG++ H      GC L+ DE+  ++SW                    
Sbjct: 295 YVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITD 354

Query: 318 ---SLKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYR-LYNLELEED 373
              ++K  ++   P   H  ++WHIL K+S++L   +   ++++ A+F + +Y    EE+
Sbjct: 355 QDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVI-KQHENFMAKFEKCIYRSWTEEE 413

Query: 374 FEEEWSKMVNKYGLREYKHITSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRIL 433
           F + W K+++++ L+E + + SLY  R  W   ++R  F AG+ +  +SE+INAF  + +
Sbjct: 414 FGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYV 473

Query: 434 SAQSQLDRFVERVAEIVE--FNDRAATKQKMQRKLQKICLKTGSPIESHAATVLTPYAFG 491
             ++ +  FV++   I++  + + A        K  +  LK+ SP+E   + V T   F 
Sbjct: 474 HKKTTVQEFVKQYETILQDRYEEEAKADSDTWNK--QPALKSPSPLEKSVSGVYTHAVFK 531

Query: 492 KLQEELLMA----PQYASLLVDEGC--FQVKHHTETDGGCKVIWIPCQEHISCSCHQFEF 545
           K Q E+L A    P+  S   DE    F+V+   E +    V W   +  +SC C  FE+
Sbjct: 532 KFQVEVLGAVACHPKMESQ--DETSITFRVQ-DFEKNQDFTVTWNQTKLEVSCICRLFEY 588

Query: 546 SGILCRHVLRVLSTDNCFQIPDQYLPIRW 574
            G LCRH L VL       IP QY+  RW
Sbjct: 589 KGYLCRHALVVLQMCQLSAIPSQYILKRW 617

Length = 846
>gnl|CDD|217369 pfam03101, FAR1, FAR1 DNA-binding domain Back     alignment and domain information
>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain Back     alignment and domain information
>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger Back     alignment and domain information
>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 731
PLN03097846 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis 100.0
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 99.79
PF1055193 MULE: MULE transposase domain; InterPro: IPR018289 99.62
PF00872381 Transposase_mut: Transposase, Mutator family; Inte 99.51
PF08731111 AFT: Transcription factor AFT; InterPro: IPR014842 99.28
smart0057528 ZnF_PMZ plant mutator transposase zinc finger. 98.94
COG3328379 Transposase and inactivated derivatives [DNA repli 98.87
PF0310867 DBD_Tnp_Mut: MuDR family transposase; InterPro: IP 98.42
PF0443440 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f 98.24
PF1528840 zf-CCHC_6: Zinc knuckle 94.9
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 94.83
PF0009818 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi 94.71
PF01610249 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut 92.88
PF1369632 zf-CCHC_2: Zinc knuckle 92.13
COG5179968 TAF1 Transcription initiation factor TFIID, subuni 88.53
PRK08561151 rps15p 30S ribosomal protein S15P; Reviewed 86.7
PF06782470 UPF0236: Uncharacterised protein family (UPF0236); 86.48
smart0077459 WRKY DNA binding domain. The WRKY domain is a DNA 86.47
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.4e-121  Score=1045.52  Aligned_cols=578  Identities=26%  Similarity=0.469  Sum_probs=511.1

Q ss_pred             cCCccCCCCCCCCCCCccCCHHHHHHHHHHHHHhcCceEEEcceeccCCCCcceEEEEeeecCCCCCCCCCCC-------
Q 004769           31 ILSQQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQMKPSD-------  103 (731)
Q Consensus        31 ~~~~~~~~~~~P~~g~~F~S~eea~~~y~~yA~~~GF~ir~~~s~~~~~~gk~~~~~~~~C~r~G~~~~k~~~-------  103 (731)
                      ++..+.+..++|.+||+|+|+|||++||+.||+..||+||+.++++++..| .++.++|+|+|+|+++.+.+.       
T Consensus        63 ~~~~~~~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~-~ii~r~fvCsreG~~~~~~~~~~~~~~~  141 (846)
T PLN03097         63 LVEFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSR-EFIDAKFACSRYGTKREYDKSFNRPRAR  141 (846)
T ss_pred             cccccCCCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCC-cEEEEEEEEcCCCCCccccccccccccc
Confidence            344456677899999999999999999999999999999999998877654 688999999999987543210       


Q ss_pred             -----CccccccCCcccccccceEEEEEeecCCCCcEEEEEEeCCccCCCCCccccccCCcCCCCCcchhhHHHHhhhcC
Q 004769          104 -----DGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVHNHELLKLNEVRLLPAYCSITPDDKTRICMFAKAG  178 (731)
Q Consensus       104 -----~~~~~r~~~s~rtgCpa~i~~~~~~~~~~~~W~V~~~~~~HNH~l~~~~~~~~l~shR~ls~~~k~~i~~l~~~g  178 (731)
                           ....+++|+.+||||||+|+|++.   ..|+|+|+.|+.+|||||.++..+         +              
T Consensus       142 ~~k~~~~~~~~rR~~tRtGC~A~m~Vk~~---~~gkW~V~~fv~eHNH~L~p~~~~---------~--------------  195 (846)
T PLN03097        142 QTKQDPENGTGRRSCAKTDCKASMHVKRR---PDGKWVIHSFVKEHNHELLPAQAV---------S--------------  195 (846)
T ss_pred             ccccCcccccccccccCCCCceEEEEEEc---CCCeEEEEEEecCCCCCCCCcccc---------c--------------
Confidence                 001123456799999999999875   468999999999999999865421         1              


Q ss_pred             CcHHHHHHHHHHhhCccCCCCCcchhhhhhhHHHhhhc-cccccHHHHHHHHHHhhcCCCCcEEEEeecCCCCeeEEEec
Q 004769          179 MSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNV-NRDYDAIDLIAMCKKMKDKNPNFQYDFKMDGHNRLEHIAWS  257 (731)
Q Consensus       179 ~~~~~I~~~l~~~~g~~~~~~~~~~~Di~N~~~~~r~~-~~~~d~~~l~~~~~~~~~~np~~~~~~~~d~~~~~~~if~~  257 (731)
                      ..++.++..+....+. +.++.++..|..|...+.|+. ...+|++.|++||++++.+||+|||++++|++|++++|||+
T Consensus       196 ~~~r~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~r~~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWa  274 (846)
T PLN03097        196 EQTRKMYAAMARQFAE-YKNVVGLKNDSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWV  274 (846)
T ss_pred             hhhhhhHHHHHhhhhc-cccccccchhhcchhhHHHhhhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEec
Confidence            1233444444444443 567777888888887776644 56799999999999999999999999999999999999999


Q ss_pred             chhhHHHHHhcCCEEEecCcccccccCcceeeEEEecCCCCeeeeeehhccCCchhhHHHHHH-----------------
Q 004769          258 YASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGMACFFGCVLLRDENMQSFSWSLK-----------------  320 (731)
Q Consensus       258 ~~~s~~~~~~f~~vl~~D~Ty~tn~y~~pl~~~~g~d~~~~~~~~a~al~~~E~~es~~W~l~-----------------  320 (731)
                      |+.|+.+|.+|||||+||+||+||+|+|||++|+|||||+|+++||||||.+|+.+||.|+|+                 
T Consensus       275 D~~sr~~Y~~FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTD  354 (846)
T PLN03097        275 DAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITD  354 (846)
T ss_pred             cHHHHHHHHhcCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEec
Confidence            999999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             ------HHHHhhCCCCCccccHHHHHHHhhhccCcccCCChhhHHHHHHh-HccCCCHHHHHHHHHHhhhhcccccchHH
Q 004769          321 ------EAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSSYDDWKAEFYR-LYNLELEEDFEEEWSKMVNKYGLREYKHI  393 (731)
Q Consensus       321 ------~Ai~~vfP~a~h~lC~~Hi~~n~~~~~~~~~~~~~~~~~~~f~~-~~~~~t~~eFe~~w~~l~~~~~~~~~~~l  393 (731)
                            +||++|||+|.||+|+|||++|+.++++..+ ..++.|+.+|+. |+++.+++|||..|..|+++|++++|+||
T Consensus       355 qd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~-~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL  433 (846)
T PLN03097        355 QDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVI-KQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWM  433 (846)
T ss_pred             CCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHh-hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHH
Confidence                  9999999999999999999999999998765 346789999986 67789999999999999999999999999


Q ss_pred             HHHHHhhccccccccccccccCcccCCccchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 004769          394 TSLYALRTFWALPFLRHYFFAGLLSPCQSEAINAFIQRILSAQSQLDRFVERVAEIVEFNDRAATKQKMQRKLQKICLKT  473 (731)
Q Consensus       394 ~~l~~~r~~Wa~ay~~~~~~~g~~tt~r~Es~n~~lk~~l~~~~~l~~f~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~t  473 (731)
                      +.||+.|++||++|+++.|++||.||+|+||+|++||+|+++.++|..|+++|+.+++.++++|+++++.+....|.+++
T Consensus       434 ~~LY~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t  513 (846)
T PLN03097        434 QSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKS  513 (846)
T ss_pred             HHHHHhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988888889999


Q ss_pred             CChHHHHHHhhccHHHHHHHHHHHHhccCceEEEee-CC---eEEEEEeeeecCceEEEEccCCCceEeecCCcccCCcc
Q 004769          474 GSPIESHAATVLTPYAFGKLQEELLMAPQYASLLVD-EG---CFQVKHHTETDGGCKVIWIPCQEHISCSCHQFEFSGIL  549 (731)
Q Consensus       474 ~~~~e~~a~~iyT~~~f~~~q~e~~~s~~~~v~~~~-~~---~y~V~~~~~~~~~~~V~~~~~~~~~~CsC~~fe~~GiP  549 (731)
                      ++|||+||+.+|||+||++||+|+..+..|.+.... +|   .|.|....+ .+.+.|.+|.....++|+|++||+.|||
T Consensus       514 ~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~-~~~~~V~~d~~~~~v~CsC~kFE~~GIL  592 (846)
T PLN03097        514 PSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEK-NQDFTVTWNQTKLEVSCICRLFEYKGYL  592 (846)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecC-CCcEEEEEecCCCeEEeeccCeecCccc
Confidence            999999999999999999999999999998886643 33   688876543 5679999999999999999999999999


Q ss_pred             hhhHHHHhhcCCCccCCCCCcccccccccCCCCCCCCCC--CCChhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004769          550 CRHVLRVLSTDNCFQIPDQYLPIRWRNVTSASTNPLRTT--TRDRSEKIQLLESMASALVSESLETEERLDVACEQVAMV  627 (731)
Q Consensus       550 C~Hil~vl~~~~i~~ip~~yi~~RWtk~a~~~~~~~~~~--~~~~~~r~~~l~~~~~~~~~~~~~s~e~~~~~~~~l~~~  627 (731)
                      |+|||+||.+++|.+||++||++||||+|+.....+...  ..+...||+.|++.+.+++.+|+.|+|.|..|++.|+++
T Consensus       593 CrHaLkVL~~~~v~~IP~~YILkRWTKdAK~~~~~~~~~~~~~~~~~Ryn~L~r~a~kla~~as~S~E~y~~a~~~L~e~  672 (846)
T PLN03097        593 CRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEA  672 (846)
T ss_pred             hhhHHHHHhhcCcccCchhhhhhhchhhhhhcccCccccccccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999876654432  234567999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCC
Q 004769          628 LNHVKDLPRPI  638 (731)
Q Consensus       628 ~~~~~~~~~~~  638 (731)
                      +.++..|..+.
T Consensus       673 ~~~~~~~~n~~  683 (846)
T PLN03097        673 FGNCISMNNSN  683 (846)
T ss_pred             HHHHHHhhccC
Confidence            99998766544

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ] Back     alignment and domain information
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis Back     alignment and domain information
>smart00575 ZnF_PMZ plant mutator transposase zinc finger Back     alignment and domain information
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ] Back     alignment and domain information
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF15288 zf-CCHC_6: Zinc knuckle Back     alignment and domain information
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF13696 zf-CCHC_2: Zinc knuckle Back     alignment and domain information
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed Back     alignment and domain information
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function Back     alignment and domain information
>smart00774 WRKY DNA binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query731
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 52/342 (15%), Positives = 101/342 (29%), Gaps = 111/342 (32%)

Query: 140 FSNVHNHELLKLNEV---RLLPAY---CSI--TPDDKTR-ICMFAKAGMSVRQMLRLMEL 190
            S  + + LL L  V   +   A+   C I  T    TR   +      +    + L   
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT----TRFKQVTDFLSAATTTHISLDHH 294

Query: 191 EKGVKLGCLPFTEIDVRNLLQSFRNVNRDYDAIDL-----------IAMCKKMKDKNPN- 238
                      T  +V++LL  + +        DL           +++  +        
Sbjct: 295 SMT-------LTPDEVKSLLLKYLDCRPQ----DLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 239 FQYDFKMDGHNRLEHIAWSYASSVQLYEAFGDALVFDTTHRLDSYDMLFGIWVGLDNHGM 298
           +   +K    ++L  I           E+  + L      ++  +D L            
Sbjct: 344 WDN-WKHVNCDKLTTI----------IESSLNVLEPAEYRKM--FDRLS----------- 379

Query: 299 ACFFGCVLLRDEN--MQSFS--WSLKEAVAVEMPETKHAVYIWHILAKLSDSLPTFLGSS 354
                 V     +      S  W       V +           ++ KL         S 
Sbjct: 380 ------VFPPSAHIPTILLSLIWFDVIKSDVMV-----------VVNKLHKY------SL 416

Query: 355 YD-DWKAEFYRLYNL--ELEEDFEEEWS---KMVNKYGLREYKHITSLYALRTFWALPFL 408
            +   K     + ++  EL+   E E++    +V+ Y + +      L         P+L
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL-------IPPYL 469

Query: 409 RHYFFAGL---LSPC-QSEAINAFIQRILSAQSQLD-RFVER 445
             YF++ +   L      E +  F + +      LD RF+E+
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLF-RMVF-----LDFRFLEQ 505
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query731
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 94.93
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 94.32
1a6b_B40 Momulv, zinc finger protein NCP10; nucleocapsid pr 92.61
1nc8_A29 Nucleocapsid protein; HIV-2, RNA recognition, zinc 91.58
1u6p_A56 GAG polyprotein; MLV, A-minor K-turn, stem loop, b 91.05
1dsq_A26 Nucleic acid binding protein P14; CCHC type zinc f 90.79
2ysa_A55 Retinoblastoma-binding protein 6; zinc finger, CCH 86.0
3u5c_N151 S27A, YS15, 40S ribosomal protein S13; translation 84.69
3j20_Q158 30S ribosomal protein S15P/S13E; archaea, archaeal 83.83
2a51_A39 Nucleocapsid protein; sivlhoest, structure, NCP8, 83.63
2xzm_O153 RPS13E; ribosome, translation; 3.93A {Tetrahymena 81.91
2rpr_A87 Flywch-type zinc finger-containing protein 1; flyw 81.05
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Back     alignment and structure
Probab=94.93  E-value=0.079  Score=42.03  Aligned_cols=58  Identities=17%  Similarity=0.417  Sum_probs=43.9

Q ss_pred             cCceEEEcceeccCCCCcceEEEEeeecCCCCCCCCCCCCccccccCCcccccccceEEEEEeecCCCCcEEEEEEeCCc
Q 004769           65 CGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVH  144 (731)
Q Consensus        65 ~GF~ir~~~s~~~~~~gk~~~~~~~~C~r~G~~~~k~~~~~~~~r~~~s~rtgCpa~i~~~~~~~~~~~~W~V~~~~~~H  144 (731)
                      -||..|+--.+..++.  ..-|.+|.|+.                      .||||+=.|.+..  .+....++....+|
T Consensus        16 DGy~WRKYGQK~ikgs--~~PRsYYrCt~----------------------~gC~a~K~Ver~~--~d~~~~~~tY~G~H   69 (76)
T 2ayd_A           16 DGYRWRKYGQKSVKGS--PYPRSYYRCSS----------------------PGCPVKKHVERSS--HDTKLLITTYEGKH   69 (76)
T ss_dssp             CSSCEEEEEEECCTTC--SSCEEEEEECS----------------------TTCCCEEEEEECS--SSTTEEEEEEESCC
T ss_pred             CCchhhhCcccccCCC--CCceeEeEcCC----------------------CCCCceeeEEEEC--CCCCEEEEEEccCc
Confidence            4888888766655543  34567788963                      2799999888864  45788889999999


Q ss_pred             cCCC
Q 004769          145 NHEL  148 (731)
Q Consensus       145 NH~l  148 (731)
                      ||++
T Consensus        70 ~H~~   73 (76)
T 2ayd_A           70 DHDM   73 (76)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            9997
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Back     alignment and structure
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1 Back     alignment and structure
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A Back     alignment and structure
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A Back     alignment and structure
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O Back     alignment and structure
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic} Back     alignment and structure
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O Back     alignment and structure
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query731
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 94.72
d1nc8a_29 HIV nucleocapsid {Human immunodeficiency virus typ 93.47
d2exfa142 HIV nucleocapsid {Human immunodeficiency virus typ 91.72
d1a6bb_40 Zinc finger protein ncp10 {Moloney murine leukemia 91.38
d2exfa142 HIV nucleocapsid {Human immunodeficiency virus typ 84.34
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.72  E-value=0.021  Score=42.59  Aligned_cols=58  Identities=24%  Similarity=0.433  Sum_probs=42.5

Q ss_pred             cCceEEEcceeccCCCCcceEEEEeeecCCCCCCCCCCCCccccccCCcccccccceEEEEEeecCCCCcEEEEEEeCCc
Q 004769           65 CGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVDFDVPEWHVTGFSNVH  144 (731)
Q Consensus        65 ~GF~ir~~~s~~~~~~gk~~~~~~~~C~r~G~~~~k~~~~~~~~r~~~s~rtgCpa~i~~~~~~~~~~~~W~V~~~~~~H  144 (731)
                      -||..|+--.+.-++.  ..-|.+|.|+.                      .||+|+=.|.+..  .++.-.++....+|
T Consensus        12 DGy~WRKYGQK~ikgs--~~pRsYYrCt~----------------------~~C~a~K~Vqr~~--~d~~~~~vtY~G~H   65 (71)
T d1wj2a_          12 DGYRWRKYGQKVVKGN--PYPRSYYKCTT----------------------PGCGVRKHVERAA--TDPKAVVTTYEGKH   65 (71)
T ss_dssp             SSSCBCCCEEECCTTC--SSCEEEEEEEC----------------------SSCEEEEEEEEET--TTTSEEEEEEESCC
T ss_pred             CCcEecccCceeccCC--CCceEEEEccc----------------------cCCCCcceEEEEc--CCCCEEEEEEeeEe
Confidence            4788777665544433  34567788974                      2799999998875  45777888899999


Q ss_pred             cCCC
Q 004769          145 NHEL  148 (731)
Q Consensus       145 NH~l  148 (731)
                      ||++
T Consensus        66 ~h~~   69 (71)
T d1wj2a_          66 NHDL   69 (71)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            9986
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Back     information, alignment and structure
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]} Back     information, alignment and structure
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Back     information, alignment and structure