Citrus Sinensis ID: 004790

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730
Protein Sequence
MRSSHMEKVPESKALSGKLPAAVQVSHLCASSVIEVGQVSNMHGGLVREEVVRLNNVRDFKVSNTPASVRTWKGKDSLPEREEIVADTLILKGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKTVYVPISQNKSDAACLMKSLSMKGPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSPFSVPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVSSSSSKKIVGTDMKSGGKYLDFEFF
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHcccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEcccccEEEEEEEEcccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccEEEEEEEccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHcccccEEccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccEEEccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHcccccccccccccccccccHHHHHHHHHHHHcccccHHHEEEEEEEEEccccEEEEEEEcccccEEEEEEEEHHHHHHcccHHHHHHHHHHHHHcccccEccEEEEEEcccEEEEEEccccccEHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccEEcccccHHHEEEcccccEEEccccccEEcccccccEEccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHccccccccEEcEEccccEccccccHHHccHHHHHcccEccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHcccHHHcccccccHHHHHcccccccccHHHHHccccccccccccccccccccccccccccccccccccccHcccccccccEEcc
Coil and Loop (DISEMBL)
mrsshmekvpeskalsgklpaaVQVSHLCASSVIEVgqvsnmhgglVREEVVRLNnvrdfkvsntpasvrtwkgkdslperEEIVADTLILkgsddffeeagpssfsgvshpaepidtdlmktvyvpisqnksDAACLMKslsmkgpfledlsirvppkkqisavlspaeslveepselgalsspfsvprasqntensllppdseekecvwdaslppsgnvsphssidsTGVVTAMSIVNSCAstyrsdvitsdgmlsmerncestkgsvrgdslesaktsisrasdssglsddsnwsnitgsankphkgndprWKAILAIRARDGILGMSHFRLLKrlgcgdigsvylselssTRCYFAMKVMDKASLASRKKLTRAQTEREILQlldhpflptlythfetdrfsclvmeycpggdlhtlrqrqpgkhfsEYAARFYAAEVLLALEYLHMLGVvyrdlkpenvlvrddghimlsdfdlslrcavsptliktssldsdpsrrgpggsfcvqpaciepssvciqpacfiprifpqknkkktrkprselglpsstlpelvaeptaarsmsfvgtheylapeiikgeghgsavdwWTFGIFLHELlygktpfkgsgnraTLFNVvgqqlrfpdspatsyaSRDLIRGLLvkepqhrlgvkrgateikqhpffegvnwalircstppevprpmeaelpgkfgavdpvgvssssskkivgtdmksggkyldfeff
Flexible Loop (DISEMBL)
mrsshmekvpeskalsgklPAAVQVSHLCASSVIEVGQVSNMHGGLVREEVVrlnnvrdfkvsntpasvrtwkgkdslpereEIVADTLILKGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKTVYVPISQNKSDAACLMKSLSMKGPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSPFSVPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRSdvitsdgmlsMERNCEstkgsvrgdslesaktsisrasdssglsddsnwsnitgsankphkgndprWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREilqlldhpflPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLiktssldsdpsrrgPGGSFCVQPACIEPSSVCIQPACfiprifpqknkkktrkprselglpsstlpelvaepTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVkepqhrlgvkrgateikqhpffegvnwaLIRCSTPPEVPRPMEAELPGKfgavdpvgvssssskkivgtdmksggkyldfeff
Low Complexity Region (SEG)
MRSSHMEKVPESKALSGKLPAAVQVSHLCASSVIEVGQVSNMHGGlvreevvrlnnvrDFKVSNTPASVRTWKGKDSLPEREEIVADTLILKGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKTVYVPISQNKSDAACLMKSLSMKGPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSPFSVPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFyaaevllaleylHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVssssskkIVGTDMKSGGKYLDFEFF
Disordered region (IsUnstruct)
********************AAVQVSHLCASSVIEVGQVSNMHGGLVREEVVRLNNVRDFKVSNTPASVRTW**********EIVADTLILKGS**F*********************DLMKTVYVPISQ****AACLMK*******FL*********************************************************************************GVVTAMSIVNSCASTYRSDVI**************************************************************RWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA****LTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI****************SFCVQPACIEPSSVCIQPACFIPRIF**********************************MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCS**************************************************
Disordered Region (DISOPRED)
*******************************************************************************************************************************************************************************************************************************************************************************************************************************************HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV***********************************************************************LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFG*************************YLDFEFF
Disordered Region (DISEMBL)
****************GKLPAAVQVSHLCASSVIEVGQVSNMHGGLVREEVVRLNNVRDFKVSNTPASVRTWKGKDSLPEREEIVADTLILKGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKTVYVPISQNKSDAACLMKSLSMKGPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSPFSVPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMER*********************************SNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT************GGSFCVQPACIEPSSVCIQPACFIPRIFPQK*************LPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVSSSSSKKIVGTDMKSGGKYLDFEFF
Disordered Region (DISPRO)
**************LSGKLPAAVQVSHLCASSVIEVGQVSNMHGGLVREEVVRLNNVRDFKVSNTPASVRTWKGKDSLPEREEIVADTLILK*********************EPIDTDLMKTVYVPISQNKSDAACLMKSLSMKGPFLEDLSIRVPPK******************************************************************************************************************************************************GNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS**************FCVQPACIEPSSVCIQPACFIPRIFPQKNK**T**PRSE**LPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKF***************************L*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRSSHMEKVPESKALSGKLPAAVQVSHLCASSVIEVGQVSNMHGGLVREEVVRLNNVRDFKVSNTPASVRTWKGKDSLPEREEIVADTLILKGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKTVYVPISQNKSDAACLMKSLSMKGPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSPFSVPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVSSSSSKKIVGTDMKSGGKYLDFEFF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	730	2.2.26 [Sep-21-2011]
Q0DCT8	589	Protein kinase G11A OS=Or	no	no	0.684	0.848	0.644	0.0
A2YBX5	589	Protein kinase G11A OS=Or	N/A	no	0.684	0.848	0.642	0.0
P15792	609	Protein kinase PVPK-1 OS=	N/A	no	0.616	0.738	0.661	1e-178
Q05999	578	Serine/threonine-protein	no	no	0.619	0.782	0.609	1e-160
Q9LFA2	934	Serine/threonine-protein	no	no	0.646	0.505	0.571	1e-155
Q64FQ2	525	Protein kinase PINOID 2 O	no	no	0.556	0.773	0.476	1e-110
O64682	438	Protein kinase PINOID OS=	no	no	0.484	0.808	0.529	1e-107
Q94E49	493	Protein kinase PINOID 2 O	no	no	0.497	0.736	0.5	1e-106
Q2QM77	484	Protein kinase PINOID OS=	no	no	0.479	0.723	0.501	1e-102
Q9ST27	907	Phototropin-2 OS=Oryza sa	no	no	0.460	0.370	0.459	2e-97

>sp|Q0DCT8|G11A_ORYSJ Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/529 (64%), Positives = 395/529 (74%), Gaps = 29/529 (5%)

Query: 213 ASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCESTKGSVR- 271
           A +   GN+ P    D    V    I N          + S   L  E    S  GS R 
Sbjct: 79  AEVKAEGNLVPKRLADEEKGVVEDGIANGS--------LKSSSALGKEHGIASASGSARL 130

Query: 272 -GDSLESAK---TSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGI 327
            G S    +   +S  R S SS +SD+S  S+I+ S  KPHK ND RW+AI  IR RDGI
Sbjct: 131 VGRSETGERGFSSSRCRPSTSSDVSDESACSSIS-SVTKPHKANDSRWEAIQMIRTRDGI 189

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           LG+SHF+LLK+LGCGDIGSVYLSELS T+ YFAMKVMDKASLASRKKL RAQTE+EILQ 
Sbjct: 190 LGLSHFKLLKKLGCGDIGSVYLSELSGTKSYFAMKVMDKASLASRKKLLRAQTEKEILQC 249

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           LDHPFLPTLYTHFETD+FSCLVME+CPGGDLHTLRQRQ GK+F E A +FY AE+LLA+E
Sbjct: 250 LDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQRGKYFPEQAVKFYVAEILLAME 309

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGS 507
           YLHMLG++YRDLKPENVLVR+DGHIMLSDFDLSLRCAVSPTLI++S+ D++  R+    +
Sbjct: 310 YLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLIRSSNPDAEALRKN-NQA 368

Query: 508 FCVQPACIEPSSVCIQPA------CFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP 561
           +CVQPAC+EPS + IQP+      CF PR F +   KK RKP+ E+    S  PEL+AEP
Sbjct: 369 YCVQPACVEPSCM-IQPSCATPTTCFGPRFFSK--SKKDRKPKPEVVNQVSPWPELIAEP 425

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           + ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFL+ELL+GKTPFKGSGNRATLFNV
Sbjct: 426 SDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNV 485

Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCST 681
           +GQ LRFP+ P  S+++RDLIRGLLVKEPQ RLG KRGATEIKQHPFFEGVNWALIRC++
Sbjct: 486 IGQPLRFPEYPVVSFSARDLIRGLLVKEPQQRLGCKRGATEIKQHPFFEGVNWALIRCAS 545

Query: 682 PPEVPRPMEAELPGKFGAVDPVGVSSSSSKKIVGTDMKSGGKYLDFEFF 730
           PPEVPRP+E E P K     PV  S  ++        KS   YL+F+FF
Sbjct: 546 PPEVPRPVEIERPPK----QPVSTSEPAAAP-SDAAQKSSDSYLEFDFF 589

May play a role in the regulation of metabolism and signal transduction processes.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|A2YBX5|G11A_ORYSI Protein kinase G11A OS=Oryza sativa subsp. indica GN=OsI_021818 PE=2 SV=1

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/529 (64%), Positives = 395/529 (74%), Gaps = 29/529 (5%)

Query: 213 ASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCESTKGSVR- 271
           A +   GN+ P    D    V    I N          + S   L  E    S  GS R 
Sbjct: 79  AEVKAEGNLVPKRLADEEKGVVEDGIANGS--------LKSSSALGKEHGIASASGSARL 130

Query: 272 -GDSLESAK---TSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGI 327
            G S    +   +S  R S SS +SD+S  S+I+ S  KPHK ND RW+AI  IR RDGI
Sbjct: 131 VGRSETGERGFSSSRCRPSTSSDVSDESACSSIS-SVTKPHKANDSRWEAIQMIRTRDGI 189

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           LG+SHF+LLK+LGCGDIGSVYLSEL+ T+ YFAMKVMDKASLASRKKL RAQTE+EILQ 
Sbjct: 190 LGLSHFKLLKKLGCGDIGSVYLSELNGTKSYFAMKVMDKASLASRKKLLRAQTEKEILQC 249

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           LDHPFLPTLYTHFETD+FSCLVME+CPGGDLHTLRQRQ GK+F E A +FY AE+LLA+E
Sbjct: 250 LDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQRGKYFPEQAVKFYVAEILLAME 309

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGS 507
           YLHMLG++YRDLKPENVLVR+DGHIMLSDFDLSLRCAVSPTLI++S+ D++  R+    +
Sbjct: 310 YLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLIRSSNPDAEALRKN-NQA 368

Query: 508 FCVQPACIEPSSVCIQPA------CFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP 561
           +CVQPAC+EPS + IQP+      CF PR F +   KK RKP+ E+    S  PEL+AEP
Sbjct: 369 YCVQPACVEPSCM-IQPSCATPTTCFGPRFFSK--SKKDRKPKPEVVNQVSPWPELIAEP 425

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           + ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFL+ELL+GKTPFKGSGNRATLFNV
Sbjct: 426 SDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNV 485

Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCST 681
           +GQ LRFP+ P  S+++RDLIRGLLVKEPQ RLG KRGATEIKQHPFFEGVNWALIRC++
Sbjct: 486 IGQPLRFPEYPVVSFSARDLIRGLLVKEPQQRLGCKRGATEIKQHPFFEGVNWALIRCAS 545

Query: 682 PPEVPRPMEAELPGKFGAVDPVGVSSSSSKKIVGTDMKSGGKYLDFEFF 730
           PPEVPRP+E E P K     PV  S  ++        KS   YL+F+FF
Sbjct: 546 PPEVPRPVEIERPPK----QPVSTSEPAAAP-SDAAQKSSDSYLEFDFF 589

May play a role in the regulation of metabolism and signal transduction processes.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P15792|KPK1_PHAVU Protein kinase PVPK-1 OS=Phaseolus vulgaris PE=2 SV=1

 Score =  627 bits (1617), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 316/478 (66%), Positives = 377/478 (78%), Gaps = 28/478 (5%)

Query: 258 SMERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKA 317
           S++++CES   +   D  ES KTSI RAS  S  SD+S+ S+++    KPHK ND RW+A
Sbjct: 155 SVDKSCESEVAN-SSDFNESRKTSICRASTGSDASDESSTSSLSSVLYKPHKANDIRWEA 213

Query: 318 ILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTR 377
           I A+R RDG+L M HFRLLK+LGCGDIGSVYL+ELS TR  FAMKVM+K  LA+RKKL R
Sbjct: 214 IQAVRTRDGMLEMRHFRLLKKLGCGDIGSVYLAELSGTRTSFAMKVMNKTELANRKKLLR 273

Query: 378 AQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARF 437
           AQTEREILQ LDHPFLPTLYTHFET+ FSCLVME+CPGGDLH LRQRQPGK+FSE+A RF
Sbjct: 274 AQTEREILQSLDHPFLPTLYTHFETEIFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRF 333

Query: 438 YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDS 497
           Y AEVLL+LEYLHMLG++YRDLKPENVLVR+DGHIMLSDFDLSLRC+VSPTL+K+S+   
Sbjct: 334 YVAEVLLSLEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCSVSPTLVKSSN--- 390

Query: 498 DPSRRGPGGSFCVQPACIEPSSV----CIQPACFIPRIF-PQKNKKKTRKPRSELGLPSS 552
             + +     +CVQP+CIEP+ V    CI+P+CF PR    +  K K  KP++++    +
Sbjct: 391 --NLQTKSSGYCVQPSCIEPTCVMQPDCIKPSCFTPRFLSGKSKKDKKSKPKNDMHNQVT 448

Query: 553 TLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGS 612
            LPEL+AEPT ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFL+ELL+G+TPFKGS
Sbjct: 449 PLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGS 508

Query: 613 GNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV 672
            NRATLFNV+GQ LRFP+SP  S+A+RDLIRGLLVKEPQHRL  +RGATEIKQHPFF+ V
Sbjct: 509 ANRATLFNVIGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNV 568

Query: 673 NWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVSSSSSKKIVGTDMKSGGKYLDFEFF 730
           NWALIRC+TPPEVPR +               ++   ++K +G  +K  G YLD +FF
Sbjct: 569 NWALIRCATPPEVPRQV---------------INLPQTEKDLG--VKPSGNYLDIDFF 609

Phaseolus vulgaris (taxid: 3885)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q05999|KPK7_ARATH Serine/threonine-protein kinase AtPK7 OS=Arabidopsis thaliana GN=PK7 PE=2 SV=1

 Score =  566 bits (1459), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 287/471 (60%), Positives = 352/471 (74%), Gaps = 19/471 (4%)

Query: 270 VRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHK-GNDPRWKAILAIRARDGI- 327
           + G  LE     I R S  S +SD+S+ S ++ +A KPH+  ND RW AI  +R+R G  
Sbjct: 117 IGGIDLEKNGVMIYRGSIGSDVSDESSSSGLSNAAYKPHRDNNDKRWVAIQEVRSRVGSS 176

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           L    F+L+K+LG GDIG+VYL+EL  T   FA+KVM+KA++A+RKKL RAQTE+EILQ 
Sbjct: 177 LEAKDFKLIKKLGGGDIGNVYLAELIGTGVSFAVKVMEKAAIAARKKLVRAQTEKEILQS 236

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           LDHPFLPTLY+HFET+  SCLVME+CPGGDLH+LRQ+Q GK+F E AARFY AEVLLA+E
Sbjct: 237 LDHPFLPTLYSHFETEMNSCLVMEFCPGGDLHSLRQKQRGKYFPEQAARFYVAEVLLAME 296

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGS 507
           YLHMLG++YRDLKPENVLVR+DGHIMLSDFDLSLRCAVSPTL++ +++    +      S
Sbjct: 297 YLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVRFAAI----TLESKSSS 352

Query: 508 FCVQPACIEPSSV-----CIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT 562
           +C+QP C++ SS      CIQP CF PR     +K K RK  +++      LPEL+AEPT
Sbjct: 353 YCIQPTCVDQSSCIVQPDCIQPVCFTPRFL---SKGKHRKKSNDMSRQIRPLPELIAEPT 409

Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           +ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFL+ELL+G TPF+G  NRATLFNVV
Sbjct: 410 SARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGITPFRGGDNRATLFNVV 469

Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTP 682
           GQ LRFP+ P  S+A+RDLIRGLLVKEPQHRL  +RGATEIKQHPFF+ VNWALIRC++P
Sbjct: 470 GQPLRFPEHPNVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCTSP 529

Query: 683 PEVP---RPMEAELPGKFGAVDPVGVSSSSSKKIVGTDMKSGGKYLDFEFF 730
           P++P   +PM+     + G     G       K    D+K  G YL+ +FF
Sbjct: 530 PQIPQPVKPMDQAHSVRHGFSQ--GHGHVGYDKPPTVDVKPSGNYLEIDFF 578

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFA2|KIPK_ARATH Serine/threonine-protein kinase KIPK OS=Arabidopsis thaliana GN=KIPK PE=1 SV=1

 Score =  550 bits (1418), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 284/497 (57%), Positives = 355/497 (71%), Gaps = 25/497 (5%)

Query: 247 RSDVITSD--GMLSM-ERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGS 303
           + DV +S+  G+ +M E+  E+   S + +   S+K S+   S S+ +S++SN S  +  
Sbjct: 450 KQDVSSSNNSGIGAMVEKETENPTSSEKFEFSLSSKDSLGDYSRSTSISEESNLSRFS-C 508

Query: 304 ANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKV 363
            NKPH   D RW+AI  I+ + G LG+ HF LLK+LGCGDIG+VYL+EL  T C FA+KV
Sbjct: 509 GNKPHMSMDVRWEAIKHIKVQYGSLGLRHFNLLKKLGCGDIGTVYLAELIGTNCLFAIKV 568

Query: 364 MDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ 423
           MD   LA RKK  RAQ EREIL++LDHPFLPTLY  F +D  SCLVMEYCPGGDLH LRQ
Sbjct: 569 MDNEFLARRKKSPRAQAEREILKMLDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQ 628

Query: 424 RQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           +Q G+ F E AARFY AE+LLALEYLHMLG++YRDLKPEN+LVR+DGHIML+DFDLSLRC
Sbjct: 629 KQLGRCFPEPAARFYVAEILLALEYLHMLGIIYRDLKPENILVREDGHIMLTDFDLSLRC 688

Query: 484 AVSPTLIKTSS-LDSDPSR-RGP-GGSFCVQPACI-EPSSVCIQPACFIPRIFPQKNKKK 539
           AV+PTL++++S    DP+R  GP   S C+QP CI EPS    Q +CF PR+    N+++
Sbjct: 689 AVNPTLVRSNSPPGKDPARISGPYNTSNCIQPFCITEPS---CQVSCFSPRL--SSNQQQ 743

Query: 540 TRKPRSELGLP------SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWW 593
            RKP+    L       S +LP+LVAEPT ARS SFVGTHEYLAPEIIKGEGHG+AVDWW
Sbjct: 744 GRKPKRGDHLSKTQQHLSRSLPQLVAEPTEARSNSFVGTHEYLAPEIIKGEGHGAAVDWW 803

Query: 594 TFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
           TFG+ L+ELLYGKTPFKG  N  TL NVV Q L+FPDSP  S+ ++DLIRGLLVKEP++R
Sbjct: 804 TFGVLLYELLYGKTPFKGYNNDETLANVVLQNLKFPDSPLVSFQAKDLIRGLLVKEPENR 863

Query: 654 LGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVSSSSSKKI 713
           LG ++G+ EIK+HPFFEG+NWALIRC+ PPE+P   E      +G        S      
Sbjct: 864 LGSEKGSVEIKRHPFFEGLNWALIRCAIPPELPDFYE------YGGGPEAAADSPGGSNN 917

Query: 714 VGTDMKSGGKYLDFEFF 730
              + K+ G +L+FE F
Sbjct: 918 RYLECKAIGDHLEFELF 934

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q64FQ2|PID2_ARATH Protein kinase PINOID 2 OS=Arabidopsis thaliana GN=PID2 PE=1 SV=1

 Score =  399 bits (1026), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/453 (47%), Positives = 279/453 (61%), Gaps = 47/453 (10%)

Query: 280 TSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDG-ILGMSHFRLLKR 338
           +S + +   S +S  SN    + + +KPHK N   W+A+  +R   G  +G+ HFRLLKR
Sbjct: 33  SSFTASPSCSSISHLSNHGLNSYNQSKPHKANQVAWEAMARLRRCCGRAVGLEHFRLLKR 92

Query: 339 LGCGDIGSVYLSEL--SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTL 396
           LG GDIGSVYL ++  S    ++AMKV+DK ++A +KKL RA+ E++IL +LDHPF PTL
Sbjct: 93  LGSGDIGSVYLCQIRGSPETAFYAMKVVDKEAVAVKKKLGRAEMEKKILGMLDHPFCPTL 152

Query: 397 YTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVY 456
           Y  FE   +S LVMEYCPGGDL+ +R RQP K F+  + RFYAAE L+ALEYLHM+G+VY
Sbjct: 153 YAAFEASHYSFLVMEYCPGGDLYAVRLRQPSKRFTISSTRFYAAETLVALEYLHMMGIVY 212

Query: 457 RDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIE 516
           RDLKPENVL+R+DGH+MLSDFDLS +C V P  +  S  D D   +       ++  C  
Sbjct: 213 RDLKPENVLIREDGHVMLSDFDLSFKCDVVPQFL--SDNDRDRGHQEDDDDISIRRKCST 270

Query: 517 PSSVC--IQP--ACFIPRIFPQKNKKK-------------------------TRKP---- 543
           PS     + P  +CF P    ++ K                           +R P    
Sbjct: 271 PSCTTTPLNPVISCFSPTSSRRRKKNVVTTTIHENAAGTSDSVKSNDVSRTFSRSPSSCS 330

Query: 544 RSELGLP--SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHE 601
           R   GL   S   P + AEP  ARS SFVGTHEYLAPE+I G+GHGSAVDWWT+GIFL+E
Sbjct: 331 RVSNGLRDISGGCPSIFAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTYGIFLYE 390

Query: 602 LLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATS-------YASRDLIRGLLVKEPQHRL 654
           +++G+TPFKG  N  TL N++   L FP     S         ++DLI  LLVK P+ RL
Sbjct: 391 MIFGRTPFKGDNNEKTLVNILKAPLTFPKVIVNSPKEYEDMVNAQDLIIKLLVKNPKKRL 450

Query: 655 GVKRGATEIKQHPFFEGVNWALIRCSTPPEVPR 687
           G  +G+ EIK+H FFEGVNWALIR   PP VP+
Sbjct: 451 GSLKGSIEIKRHEFFEGVNWALIRSIKPPWVPK 483

Serine/threonine-protein kinase involved in the regulation of auxin signaling. Plays a minor role in the regulation of cellular auxin efflux and cotyledon organogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O64682|PID_ARATH Protein kinase PINOID OS=Arabidopsis thaliana GN=PID PE=1 SV=1

 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/389 (52%), Positives = 258/389 (66%), Gaps = 35/389 (8%)

Query: 306 KPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELS-----STRCYFA 360
           KPH+ +D  +  I   R + G L    FRL++R+G GDIG+VYL  L+     S   YFA
Sbjct: 50  KPHRSSDFAYAEIRR-RKKQG-LTFRDFRLMRRIGAGDIGTVYLCRLAGDEEESRSSYFA 107

Query: 361 MKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT 420
           MKV+DK +LA +KK+ RA+ E+ IL++LDHPFLPTLY  FE   FSC+VMEYC GGDLH+
Sbjct: 108 MKVVDKEALALKKKMHRAEMEKTILKMLDHPFLPTLYAEFEASHFSCIVMEYCSGGDLHS 167

Query: 421 LRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           LR RQP + FS  +ARFYAAEVL+ALEYLHMLG++YRDLKPEN+LVR DGHIMLSDFDLS
Sbjct: 168 LRHRQPHRRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENILVRSDGHIMLSDFDLS 227

Query: 481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKT 540
           L C+ S   +++SS  S P  +                          PR F +  +   
Sbjct: 228 L-CSDSIAAVESSS--SSPENQQLRS----------------------PRRFTRLARLFQ 262

Query: 541 RKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLH 600
           R  RS+           VAEP  ARS SFVGTHEY+APE+  G  HG+AVDWW FG+FL+
Sbjct: 263 RVLRSKKVQTLEPTRLFVAEPVTARSGSFVGTHEYVAPEVASGGSHGNAVDWWAFGVFLY 322

Query: 601 ELLYGKTPFKGSGNRATLFNVVGQQLRFP-DSPATSYA--SRDLIRGLLVKEPQHRLGVK 657
           E++YGKTPF    N   L N+V +QL FP DSPAT +   +R+LI GLL K+P  RLG +
Sbjct: 323 EMIYGKTPFVAPTNDVILRNIVKRQLSFPTDSPATMFELHARNLISGLLNKDPTKRLGSR 382

Query: 658 RGATEIKQHPFFEGVNWALIRCSTPPEVP 686
           RGA E+K HPFF+G+N+ALIR  TPPE+P
Sbjct: 383 RGAAEVKVHPFFKGLNFALIRTLTPPEIP 411

Serine/threonine-protein kinase involved in the regulation of auxin signaling. Acts as a positive regulator of cellular auxin efflux and regulates organ development by enhancing polar auxin transport. Phosphorylates conserved serine residues in the PIN auxin efflux carriers. Phosphorylation of PIN proteins is required and sufficient for apical-basal PIN polarity that enables directional intercellular auxin fluxes, which mediate differential growth, tissue patterning and organogenesis. Acts in association with PIN1 to control the establishment of bilateral symmetry and promotion of cotyledon outgrowth. Regulates root gravitropism through modulation of PIN2-dependent basipetal auxin transport. Required for polarization of PIN3-dependent auxin transport for hypocotyl gravitropic response. The protein kinase activity of PID is essential for its auxin efflux regulatory function. PID kinase and PP2A phosphatase activities antagonistically regulate phosphorylation of PIN proteins, affecting PIN sorting.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94E49|PID2_ORYSJ Protein kinase PINOID 2 OS=Oryza sativa subsp. japonica GN=PID2 PE=2 SV=1

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/410 (50%), Positives = 263/410 (64%), Gaps = 47/410 (11%)

Query: 306 KPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSEL-----------SS 354
           KPHK N   W+AI  +RA  G +G+ HFRL++RLG GD+G+VYL  L           ++
Sbjct: 53  KPHKANQAEWEAIRRLRAGAGRVGLEHFRLVRRLGSGDLGNVYLCRLREPWSSSSMTTTA 112

Query: 355 TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCP 414
             C +AMKV+DK +LA RKKL RA+ ER+IL+ LDHPFLPTLY  FE   ++CLVME+CP
Sbjct: 113 GGCLYAMKVVDKDALAFRKKLRRAEVERDILRTLDHPFLPTLYADFEASHYACLVMEFCP 172

Query: 415 GGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIML 474
           GGDLH  RQRQPG+ F+  + RFY AE +LALEYLHM+GVVYRDLKPENVLVR DGHIML
Sbjct: 173 GGDLHVARQRQPGRRFTVSSTRFYVAETVLALEYLHMMGVVYRDLKPENVLVRGDGHIML 232

Query: 475 SDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQP---ACIEPSSVCIQP--ACFIP 529
           SDFDLSL+C V P L++       P+R    G     P   +C+ P+   IQP  +C   
Sbjct: 233 SDFDLSLKCDVVPKLLR-------PARSAAAGGKPPLPPPSSCVPPT---IQPVLSCIFR 282

Query: 530 RIFPQKNKKK-------------TRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYL 576
            +    + K+                   E    ++    +V EP AARS SFVGTHEYL
Sbjct: 283 GVHKCHHAKECAGGGAAAGNNGDGDGNDEEAETETAEPEVVVVEPVAARSKSFVGTHEYL 342

Query: 577 APEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSY 636
           APE+I G+GHGSAVDWWT G+F++E+LYG+TPFKG  N  TL N++ Q + FP     + 
Sbjct: 343 APEVISGQGHGSAVDWWTLGVFMYEMLYGRTPFKGESNEKTLINIIKQPVTFPRLAGAAA 402

Query: 637 --------ASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIR 678
                    ++DL+  LL K P+ RLG   G+ E+K+HPFF+GVNWAL+R
Sbjct: 403 AGEWEEMKTAQDLMLQLLAKNPKKRLGSTMGSAEVKRHPFFKGVNWALVR 452

Serine/threonine-protein kinase involved in the regulation of auxin signaling.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q2QM77|PID_ORYSJ Protein kinase PINOID OS=Oryza sativa subsp. japonica GN=PID PE=2 SV=1

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/393 (50%), Positives = 253/393 (64%), Gaps = 43/393 (10%)

Query: 306 KPHKGNDPRWKAILAIRARDGI-LGMSHFRLLKRLGCGDIGSVYLSELSSTR-----CYF 359
           +PH+  D  W AI A        LG   F+L++R+G GDIG+VYL  L S+      C +
Sbjct: 83  RPHRSGDVAWAAIRAASTTSAAPLGPRDFKLVRRIGGGDIGTVYLCRLRSSPERESPCMY 142

Query: 360 AMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE-TDRFSCLVMEYCPGGDL 418
           AMKV+D+ ++A ++KL RA  E+ IL+ LDHPFLPTL+  F+ T  FSC VME+CPGGDL
Sbjct: 143 AMKVVDRRAVARKQKLGRAAAEKRILRQLDHPFLPTLFADFDATPHFSCAVMEFCPGGDL 202

Query: 419 HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFD 478
           H+LR R P + F   +ARFYAAEVLLA+EYLHM+G+VYRDLKPENVL+R DGHIML+DFD
Sbjct: 203 HSLRHRMPSRRFPLPSARFYAAEVLLAIEYLHMMGIVYRDLKPENVLIRADGHIMLTDFD 262

Query: 479 LSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKK 538
           LSL+   SP+L   +  D + S    GG+ C                      FP    +
Sbjct: 263 LSLQSTTSPSLDGDTDTDDEAS----GGASC----------------------FPDHLLR 296

Query: 539 KTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIF 598
             R+ R+ +  P    P  VAEP  ARS SFVGTHEY+APE+  G  HG+AVDWW +G+F
Sbjct: 297 FKRR-RNAVAAPR---PRFVAEPVDARSCSFVGTHEYVAPEVASGGAHGAAVDWWAYGVF 352

Query: 599 LHELLYGKTPFKGSGNRATLFNVVGQQLRFPD-----SPATSYASRDLIRGLLVKEPQHR 653
           L+EL+YG+TPF G+ N ATL N+V + L FP       PA + A RDLI  LL K+P  R
Sbjct: 353 LYELIYGRTPFAGATNEATLRNIVRRPLAFPSGSGSCGPADADA-RDLIARLLAKDPAAR 411

Query: 654 LGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP 686
           LG +RGA ++K HPFF+ +N AL+R S PP VP
Sbjct: 412 LGSRRGAADVKSHPFFKSLNLALLRSSRPPVVP 444

Serine/threonine-protein kinase involved in the regulation of auxin signaling. May control polar auxin transport and probably plays a role in the pattern formation and organogenesis in the rice shoot.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ST27|PHOT2_ORYSJ Phototropin-2 OS=Oryza sativa subsp. japonica GN=PHOT2 PE=1 SV=1

 Score =  357 bits (915), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 177/385 (45%), Positives = 235/385 (61%), Gaps = 49/385 (12%)

Query: 306 KPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD 365
           KPHK N+P W AI         +G+ HF+ +K LGCGD GSV+L EL  +   FAMK MD
Sbjct: 549 KPHKRNNPSWIAIEKATNLGEKIGLKHFKPVKPLGCGDTGSVHLVELQGSGELFAMKAMD 608

Query: 366 KASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQ 425
           K+ + +R K+ RA  EREI  LLDHPFLPTLYT F+T    CL+ ++CPGG+L  +  RQ
Sbjct: 609 KSVMLNRNKVHRACIEREIYALLDHPFLPTLYTSFQTPTHVCLITDFCPGGELFAVLDRQ 668

Query: 426 PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV 485
           P K F E  ARFYAAEV++ LEYLH LG++YRDLKPEN+L++ DGHI+L+DFDLS     
Sbjct: 669 PMKIFREECARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQADGHIVLTDFDLSFLTTS 728

Query: 486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRS 545
            P +IK S+                                              ++ RS
Sbjct: 729 KPHVIKNST--------------------------------------------SLKRRRS 744

Query: 546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYG 605
           +  LP    P  V+EP+   S SFVGT EY+APE+I G GH SA+DWW  GI L+E+LYG
Sbjct: 745 QEFLP----PTFVSEPSTP-SNSFVGTEEYIAPEVITGAGHTSAIDWWALGILLYEMLYG 799

Query: 606 KTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ 665
           +TPF+G   + T +N++ + L FP S   S A++ LI GLL ++P +R+G   GA +IKQ
Sbjct: 800 RTPFRGKNRKKTFYNILHKDLTFPSSIPVSLAAKQLIHGLLQRDPSNRIGSNAGANDIKQ 859

Query: 666 HPFFEGVNWALIRCSTPPEVPRPME 690
           H FF+ +NW LIRC +PPE+  P++
Sbjct: 860 HSFFQDINWPLIRCMSPPELDVPLK 884

Protein kinase that acts as a blue-light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	730
225453382	712	PREDICTED: protein kinase G11A [Vitis vi	0.969	0.994	0.861	0.0
255541040	724	serine/threonine protein kinase, putativ	0.989	0.997	0.866	0.0
224067491	731	predicted protein [Populus trichocarpa]	0.990	0.989	0.828	0.0
118486170	731	unknown [Populus trichocarpa]	0.990	0.989	0.826	0.0
356567002	768	PREDICTED: protein kinase G11A-like [Gly	0.987	0.938	0.775	0.0
356529977	766	PREDICTED: protein kinase G11A-like [Gly	0.987	0.941	0.775	0.0
449478041	727	PREDICTED: protein kinase G11A-like [Cuc	0.973	0.977	0.827	0.0
449431946	735	PREDICTED: LOW QUALITY PROTEIN: protein	0.973	0.967	0.818	0.0
356504569	763	PREDICTED: protein kinase G11A-like [Gly	0.986	0.943	0.774	0.0
224136462	650	predicted protein [Populus trichocarpa]	0.880	0.989	0.865	0.0

>gi|225453382|ref|XP_002273241.1| PREDICTED: protein kinase G11A [Vitis vinifera] gi|147857163|emb|CAN79227.1| hypothetical protein VITISV_011040 [Vitis vinifera]

 Score = 1245 bits (3222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/729 (86%), Positives = 664/729 (91%), Gaps = 21/729 (2%)

Query: 6   MEKVPESK-ALSGKLPAAVQVSHLCASSVIEVGQVSNMHGGLVREEVVRLNNVRDFKVSN 64
           ME++PESK  L G+LP               VG V+  H  L+R+EV R  + RD + S+
Sbjct: 1   MERIPESKKTLPGQLPI--------------VGLVAKQHMALLRQEVGR-PDARDSQDSD 45

Query: 65  T-PASVRTWKGKDSLPEREEIVADTLILKGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKT 123
           + PA +RTWKGKDSL E+EE + D  ++KGS D FEE GPSSFSG SHP EP+DTD M+T
Sbjct: 46  SSPAPIRTWKGKDSLLEQEESMPD--VVKGSSDSFEEGGPSSFSGASHPPEPVDTDPMRT 103

Query: 124 VYVPISQNKSDAACLMKSLSMKGPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGALS 183
           VYVPI Q KS+  CLMKSLSMKGPFLEDLSIRV   K   +VLSPAESLVEEP++LGALS
Sbjct: 104 VYVPIGQKKSEGGCLMKSLSMKGPFLEDLSIRVSGIKPSPSVLSPAESLVEEPNDLGALS 163

Query: 184 SPFSVPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCA 243
           SPFS+PRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCA
Sbjct: 164 SPFSIPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCA 223

Query: 244 STYRSDVITSDGMLSMERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGS 303
           STYRSD +TSDGMLS+ERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGS
Sbjct: 224 STYRSDAMTSDGMLSVERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGS 283

Query: 304 ANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKV 363
           ANKPHKGNDPRWKAILAIRARDGILGMSHFRLL+RLGCGDIGSVYLSELS TRCYFAMKV
Sbjct: 284 ANKPHKGNDPRWKAILAIRARDGILGMSHFRLLRRLGCGDIGSVYLSELSGTRCYFAMKV 343

Query: 364 MDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ 423
           MDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME+CPGGDLHTLRQ
Sbjct: 344 MDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEFCPGGDLHTLRQ 403

Query: 424 RQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           RQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC
Sbjct: 404 RQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 463

Query: 484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKN-KKKTRK 542
           AVSPTLIKTSS DSDPS+RG GG+FCVQPACIEPSSVCIQPACFIPRIFPQKN KKKTR+
Sbjct: 464 AVSPTLIKTSSFDSDPSKRGTGGAFCVQPACIEPSSVCIQPACFIPRIFPQKNSKKKTRR 523

Query: 543 PRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHEL 602
           PR+E GLP+STLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHEL
Sbjct: 524 PRAEPGLPASTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHEL 583

Query: 603 LYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATE 662
           LYGKTPFKGSGNRATLFNVVGQQLRFPD+PATSYASRDLIRGLLVKEPQHRLGVKRGATE
Sbjct: 584 LYGKTPFKGSGNRATLFNVVGQQLRFPDAPATSYASRDLIRGLLVKEPQHRLGVKRGATE 643

Query: 663 IKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVS-SSSSKKIVGTDMKSG 721
           IKQHPFFEGVNWALIRCSTPPE+PRP+E ELPGKFG VD VGV   SSSK++VG DMKSG
Sbjct: 644 IKQHPFFEGVNWALIRCSTPPEIPRPVETELPGKFGTVDTVGVGIGSSSKRMVGADMKSG 703

Query: 722 GKYLDFEFF 730
           GKYLDFEFF
Sbjct: 704 GKYLDFEFF 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541040|ref|XP_002511584.1| serine/threonine protein kinase, putative [Ricinus communis] gi|223548764|gb|EEF50253.1| serine/threonine protein kinase, putative [Ricinus communis]

 Score = 1241 bits (3210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/727 (86%), Positives = 662/727 (91%), Gaps = 5/727 (0%)

Query: 6   MEKVPESKALSGKLPAAVQVSHLCASSVIEVGQVSNMHGGLVREEVVRLNNVRDFKVSNT 65
           ME+V ESK L GKLP A Q+S+   +   E GQ+  +  GLVRE V R +  +  +V + 
Sbjct: 1   MERVTESKTLPGKLPVASQLSNAYVTLGREGGQMQRLQTGLVREVVGRFH-AQGSQVIDL 59

Query: 66  PASVRTWKGKDSLPEREEIVADTLILKGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKTVY 125
           P  VR WKGKDSL  +EEI+ D +  KGS D F+E G SSFSG SHP EPID DLMKTV+
Sbjct: 60  PVPVRPWKGKDSLAVQEEIMLDVVPSKGSGDSFDEGGSSSFSGASHPPEPIDMDLMKTVF 119

Query: 126 VPISQNKSDAACLMKSLSMKGPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSP 185
           VPI Q KS+A CLMKS+S+KGPFLEDLSIRVPPKK   A+LSPAESLVEEP+EL ALSSP
Sbjct: 120 VPIGQKKSEAGCLMKSVSVKGPFLEDLSIRVPPKKPSLAILSPAESLVEEPNELVALSSP 179

Query: 186 FSVPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCAST 245
           FS+ RASQNTE SLLP DSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCAST
Sbjct: 180 FSIARASQNTEGSLLPADSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCAST 239

Query: 246 YRSDVITSDGMLSMERNCESTKGSV--RGDSLESAKTSISRASDSSGLSDDSNWSNITGS 303
           YRSD ITSDGMLSMERNCESTKGSV  RGDSLESAKTS+SRASDSSGLSDDSNWSNITGS
Sbjct: 240 YRSDAITSDGMLSMERNCESTKGSVSVRGDSLESAKTSVSRASDSSGLSDDSNWSNITGS 299

Query: 304 ANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKV 363
           ANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELS TRCYFAMKV
Sbjct: 300 ANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKV 359

Query: 364 MDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ 423
           MDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ
Sbjct: 360 MDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ 419

Query: 424 RQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           RQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC
Sbjct: 420 RQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 479

Query: 484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKP 543
           AVSPTLIKT S DSDPS+R  GG+FCVQPACIEPSSVCIQPACFIPRIFPQK+KKK RKP
Sbjct: 480 AVSPTLIKT-SFDSDPSKRAAGGAFCVQPACIEPSSVCIQPACFIPRIFPQKSKKKNRKP 538

Query: 544 RSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL 603
           R+E G+PSS LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL
Sbjct: 539 RAEFGVPSSALPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL 598

Query: 604 YGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEI 663
           YGKTPFKGSGNRATLFNVVGQQLRFP+SP+TSYASRDLIRGLLVKEPQHRLGVKRGATEI
Sbjct: 599 YGKTPFKGSGNRATLFNVVGQQLRFPESPSTSYASRDLIRGLLVKEPQHRLGVKRGATEI 658

Query: 664 KQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVSSSSSKKIVGTDMKSGGK 723
           KQHPFFEGVNWALIRCSTPPEVPRP+E ELPGKFGAVDP+GV  SSSK+IVGTDMKSGGK
Sbjct: 659 KQHPFFEGVNWALIRCSTPPEVPRPVETELPGKFGAVDPIGV-GSSSKRIVGTDMKSGGK 717

Query: 724 YLDFEFF 730
           YLDFEFF
Sbjct: 718 YLDFEFF 724

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067491|ref|XP_002302494.1| predicted protein [Populus trichocarpa] gi|222844220|gb|EEE81767.1| predicted protein [Populus trichocarpa]

 Score = 1202 bits (3111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/733 (82%), Positives = 650/733 (88%), Gaps = 10/733 (1%)

Query: 6   MEKVPESKALSGKLPAAVQVS-HLCASSVIEVGQVSNMHGGLVREEVVRLNNVRDFKVSN 64
           ME++ ESKAL  KLP A QVS      S  EV Q   +  GLVR+   R N     ++++
Sbjct: 1   MERIAESKALPAKLPVASQVSSRAYVVSGREVSQAPKLQTGLVRDVAGRFN-AHQSQITD 59

Query: 65  TPASVRTWKGKDSLPEREEIVADTLIL-KGSDDFFEEAGPSSFSGVSHPAEPIDTDL-MK 122
            P  VR WKGKDS    ++++ D ++  KGS D F+E  PSSFSG SHP EPIDTDL MK
Sbjct: 60  FPVPVRPWKGKDSAAIEDDLMLDVVVTSKGSGDSFDEGEPSSFSGASHPPEPIDTDLIMK 119

Query: 123 TVYVPISQNKSDAACLMKSLSMKGPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGAL 182
           TVYVPISQ K++  CL+KS+S+KGPFLEDLSIRV PKK    +LSPAESL+EEP++L  L
Sbjct: 120 TVYVPISQKKAEPGCLVKSMSVKGPFLEDLSIRVSPKKPSPVILSPAESLIEEPNDLLVL 179

Query: 183 SSPFSVPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSC 242
            SPF+VPR SQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSC
Sbjct: 180 PSPFTVPRRSQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSC 239

Query: 243 ASTYRSDVITSDGMLSMERNCESTKGSV--RGDSLESAKTSISRASDSSGLSDDSNWSNI 300
           ASTYRSDVITSDGML+++RNCESTKGSV  RGDSLESAKTS+SRASDSSGLSDDSNWSNI
Sbjct: 240 ASTYRSDVITSDGMLTIDRNCESTKGSVSVRGDSLESAKTSVSRASDSSGLSDDSNWSNI 299

Query: 301 TGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFA 360
           TGSANKPHKGNDPRW AILAIRARDGILGMSHFRL KRLGCGDIGSVYLSELS TRC+FA
Sbjct: 300 TGSANKPHKGNDPRWNAILAIRARDGILGMSHFRLFKRLGCGDIGSVYLSELSGTRCFFA 359

Query: 361 MKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT 420
           MKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT
Sbjct: 360 MKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT 419

Query: 421 LRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           LRQRQPGKHFSE+AARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS
Sbjct: 420 LRQRQPGKHFSEHAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 479

Query: 481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKT 540
           LRCAVSPTLI+T S DSDPS+R  GG+FCVQPACIEPSSVCIQPACF+PRIF QKNKKKT
Sbjct: 480 LRCAVSPTLIRT-SFDSDPSKRAAGGAFCVQPACIEPSSVCIQPACFLPRIFAQKNKKKT 538

Query: 541 RKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLH 600
           RK R +LGLP+  LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLH
Sbjct: 539 RKSRHDLGLPACALPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLH 598

Query: 601 ELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGA 660
           ELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPAT+YAS+DLIRGLLVKEPQHRLGVKRGA
Sbjct: 599 ELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATAYASQDLIRGLLVKEPQHRLGVKRGA 658

Query: 661 TEIKQHPFFEGVNWALIRCSTPPEVPRPMEAE-LPGKFGAVDPVGVS--SSSSKKIVGTD 717
           TEIKQHPFFE VNWALIRCSTPPEVPRP+E E  PGKFGAVD +GV    SSSK++ GTD
Sbjct: 659 TEIKQHPFFESVNWALIRCSTPPEVPRPVETEPSPGKFGAVDKIGVGIVGSSSKRMAGTD 718

Query: 718 MKSGGKYLDFEFF 730
           MKSGGKYLDFEFF
Sbjct: 719 MKSGGKYLDFEFF 731

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486170|gb|ABK94928.1| unknown [Populus trichocarpa]

 Score = 1201 bits (3106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/733 (82%), Positives = 650/733 (88%), Gaps = 10/733 (1%)

Query: 6   MEKVPESKALSGKLPAAVQVS-HLCASSVIEVGQVSNMHGGLVREEVVRLNNVRDFKVSN 64
           ME++ ESKAL  KLP A QVS      S  EV Q   +  GLVR+   R N     ++++
Sbjct: 1   MERIAESKALPAKLPVASQVSSRAYVVSGREVSQAPKLQTGLVRDVAGRFN-AHQSQITD 59

Query: 65  TPASVRTWKGKDSLPEREEIVADTLIL-KGSDDFFEEAGPSSFSGVSHPAEPIDTDL-MK 122
            P  VR WKGKDS    ++++ + ++  KGS D F+E  PSSFSG SHP EPIDTDL MK
Sbjct: 60  FPVPVRPWKGKDSAAIEDDLMLNVVVTSKGSGDSFDEGEPSSFSGASHPPEPIDTDLIMK 119

Query: 123 TVYVPISQNKSDAACLMKSLSMKGPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGAL 182
           TVYVPISQ K++  CL+KS+S+KGPFLEDLSIRV PKK    +LSPAESL+EEP++L  L
Sbjct: 120 TVYVPISQKKAEPGCLVKSMSVKGPFLEDLSIRVSPKKPSPVILSPAESLIEEPNDLLVL 179

Query: 183 SSPFSVPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSC 242
            SPF+VPR SQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSC
Sbjct: 180 PSPFTVPRRSQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSC 239

Query: 243 ASTYRSDVITSDGMLSMERNCESTKGSV--RGDSLESAKTSISRASDSSGLSDDSNWSNI 300
           ASTYRSDVITSDGML+++RNCESTKGSV  RGDSLESAKTS+SRASDSSGLSDDSNWSNI
Sbjct: 240 ASTYRSDVITSDGMLTIDRNCESTKGSVSVRGDSLESAKTSVSRASDSSGLSDDSNWSNI 299

Query: 301 TGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFA 360
           TGSANKPHKGNDPRW AILAIRARDGILGMSHFRL KRLGCGDIGSVYLSELS TRC+FA
Sbjct: 300 TGSANKPHKGNDPRWNAILAIRARDGILGMSHFRLFKRLGCGDIGSVYLSELSGTRCFFA 359

Query: 361 MKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT 420
           MKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT
Sbjct: 360 MKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT 419

Query: 421 LRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           LRQRQPGKHFSE+AARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS
Sbjct: 420 LRQRQPGKHFSEHAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 479

Query: 481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKT 540
           LRCAVSPTLI+T S DSDPS+R  GG+FCVQPACIEPSSVCIQPACF+PRIF QKNKKKT
Sbjct: 480 LRCAVSPTLIRT-SFDSDPSKRAAGGAFCVQPACIEPSSVCIQPACFLPRIFAQKNKKKT 538

Query: 541 RKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLH 600
           RK R +LGLP+  LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLH
Sbjct: 539 RKSRHDLGLPACALPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLH 598

Query: 601 ELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGA 660
           ELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPAT+YAS+DLIRGLLVKEPQHRLGVKRGA
Sbjct: 599 ELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATAYASQDLIRGLLVKEPQHRLGVKRGA 658

Query: 661 TEIKQHPFFEGVNWALIRCSTPPEVPRPMEAE-LPGKFGAVDPVGVS--SSSSKKIVGTD 717
           TEIKQHPFFE VNWALIRCSTPPEVPRP+E E  PGKFGAVD +GV    SSSK++ GTD
Sbjct: 659 TEIKQHPFFESVNWALIRCSTPPEVPRPVETEPSPGKFGAVDKIGVGIVGSSSKRMAGTD 718

Query: 718 MKSGGKYLDFEFF 730
           MKSGGKYLDFEFF
Sbjct: 719 MKSGGKYLDFEFF 731

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567002|ref|XP_003551713.1| PREDICTED: protein kinase G11A-like [Glycine max]

 Score = 1159 bits (2997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/772 (77%), Positives = 647/772 (83%), Gaps = 51/772 (6%)

Query: 6   MEKVPESKALSGKLPAAVQVSHLCASSVIEVGQ------VSNMHGGLVRE---------- 49
           ME+V E K L   LP  V+VS+   +++ E GQ      VS++ G   RE          
Sbjct: 1   MERVAEPKVLPRSLPVLVEVSNGHTAAIREAGQRLNGQDVSSVCGIPAREGNQFSKSRDG 60

Query: 50  ---------EVVRLNNVRDFKV--------------SNTPASVRTWKGKDSLPEREEIVA 86
                    EV +L+N R   V              S  P   RTWKGK SLPE  E+V+
Sbjct: 61  PMARLASIREVAQLSNARIVLVREDMGFDTRCQEPPSPVPVPTRTWKGKGSLPEAVELVS 120

Query: 87  DTLILKGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKTVYVPISQNKSDAACLMKSLSMKG 146
           D   LKGS+D F E GPSSF+G SHP EP+DTDLM+TV+VPI Q KS+A CLMKS+S+KG
Sbjct: 121 DIEKLKGSNDSFVETGPSSFAGASHPPEPVDTDLMRTVFVPIGQTKSEAGCLMKSVSLKG 180

Query: 147 PFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSPFSVPRASQNTENSLLPPDSEE 206
           PFLEDLSIRV  KK   AV+SPAE + EE +E+G LSSPFS  RASQNTENS L PDS+E
Sbjct: 181 PFLEDLSIRVLAKKPSLAVVSPAEIMAEESNEMGNLSSPFSGARASQNTENSPLAPDSDE 240

Query: 207 KECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCEST 266
           KECVWDASLPPSGNVSPHSSIDST VV  MSIVNSCASTYRSD +TSDGMLS++RNC+ST
Sbjct: 241 KECVWDASLPPSGNVSPHSSIDSTSVVRTMSIVNSCASTYRSDAVTSDGMLSLDRNCDST 300

Query: 267 KGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDG 326
           KGSVRGDSLESAKTS SRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDG
Sbjct: 301 KGSVRGDSLESAKTSASRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDG 360

Query: 327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ 386
           ILGMSHFRLLKRLGCGDIGSVYLSELS+TRC+FAMKVMDKASLASR KLTRAQTEREILQ
Sbjct: 361 ILGMSHFRLLKRLGCGDIGSVYLSELSATRCFFAMKVMDKASLASRNKLTRAQTEREILQ 420

Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
           LLDHPFLPTLYTHFETDRF CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL
Sbjct: 421 LLDHPFLPTLYTHFETDRFCCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 480

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGG 506
           EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI+  + DSDPS+RG GG
Sbjct: 481 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIR--NFDSDPSKRG-GG 537

Query: 507 SFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS 566
           +FCVQPACIEPSSVCIQP+CF+PR+F QKN KK+RKP+ + GLPSSTLPELVAEPT ARS
Sbjct: 538 AFCVQPACIEPSSVCIQPSCFMPRLFAQKN-KKSRKPKGDPGLPSSTLPELVAEPTTARS 596

Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL
Sbjct: 597 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 656

Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP 686
           RFP+SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP
Sbjct: 657 RFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP 716

Query: 687 RPMEAELPGKFGAVDPVGVS------SSSSKKIVG--TDMKSGGKYLDFEFF 730
           RP+E + P KF  VD VGV       ++SSK++VG   DMKSGGKYLDFEFF
Sbjct: 717 RPVEFDPPAKFEPVDTVGVGNNNINNNNSSKRMVGNNNDMKSGGKYLDFEFF 768

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529977|ref|XP_003533562.1| PREDICTED: protein kinase G11A-like [Glycine max]

 Score = 1158 bits (2996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/770 (77%), Positives = 645/770 (83%), Gaps = 49/770 (6%)

Query: 6   MEKVPESKALSGKLPAAVQVSHLCASSVIEVGQ------VSNMHGGLVRE---------- 49
           ME+V E K L   LP  V+VS+    ++ E GQ      VS++ G   RE          
Sbjct: 1   MERVAEPKVLPRSLPVLVEVSNAHTDAIREAGQRLNGQDVSSVRGIPGREGNQFLKARDG 60

Query: 50  ---------EVVRLNNVRDFKVSN------------TPASVRTWKGKDSLPEREEIVADT 88
                    EV +L+N R   V              +PA  R WKGK SLPE  E+V D 
Sbjct: 61  PMKRLASIREVAQLSNARIVLVREDMGFDTRCQEPPSPAPTRMWKGKGSLPEAVELVPDI 120

Query: 89  LILKGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKTVYVPISQNKSDAACLMKSLSMKGPF 148
             LKG +D F E GPSSF+G SHP EP+DTDLM+TV+VPI Q KS+A CL+KS+S+KGPF
Sbjct: 121 EKLKGGNDSFVETGPSSFAGASHPPEPVDTDLMRTVFVPIGQTKSEAGCLLKSVSLKGPF 180

Query: 149 LEDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSPFSVPRASQNTENSLLPPDSEEKE 208
           LEDLSI VP KK   AV+SPAES+VEE +E+G LSSPF   RASQNTENS L PDSEEKE
Sbjct: 181 LEDLSIHVPAKKPSLAVVSPAESMVEESNEMGNLSSPFLGARASQNTENSPLAPDSEEKE 240

Query: 209 CVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCESTKG 268
           CVWDASLPPSGNVSPHSSIDST VV  MSI NSCASTYRSD +TSDGMLS++RNC+STKG
Sbjct: 241 CVWDASLPPSGNVSPHSSIDSTSVVRTMSIANSCASTYRSDAVTSDGMLSLDRNCDSTKG 300

Query: 269 SVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGIL 328
           SVRGDSLESAKTS SRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIR RDGIL
Sbjct: 301 SVRGDSLESAKTSASRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRTRDGIL 360

Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
           GMSHFRLLKRLGCGDIGSVYLSELS+TRC+FAMKVMDKASLASR KLTRAQTEREILQLL
Sbjct: 361 GMSHFRLLKRLGCGDIGSVYLSELSATRCFFAMKVMDKASLASRNKLTRAQTEREILQLL 420

Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
           DHPFLPTLYTHFETDRF CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY
Sbjct: 421 DHPFLPTLYTHFETDRFCCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 480

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSF 508
           LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI+  + DSDPS+RG GG+F
Sbjct: 481 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIR--NFDSDPSKRG-GGAF 537

Query: 509 CVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS 568
           CVQPACIEPSSVCIQP+CF+PR+F QKN KK+R P++E G+PSSTLPELVAEPT ARSMS
Sbjct: 538 CVQPACIEPSSVCIQPSCFMPRLFAQKN-KKSRTPKAEPGMPSSTLPELVAEPTTARSMS 596

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF
Sbjct: 597 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 656

Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRP 688
           P+SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRP
Sbjct: 657 PESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRP 716

Query: 689 MEAELPGKFGAVDPVGVS-----SSSSKKIVG---TDMKSGGKYLDFEFF 730
           +E +LP KF  VD VGV      ++SSK++VG   TDMKSGGKYLDFEFF
Sbjct: 717 VECDLPAKFEPVDTVGVGNINNSNNSSKRMVGNNNTDMKSGGKYLDFEFF 766

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478041|ref|XP_004155204.1| PREDICTED: protein kinase G11A-like [Cucumis sativus]

 Score = 1154 bits (2984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/726 (82%), Positives = 637/726 (87%), Gaps = 15/726 (2%)

Query: 6   MEKVPESKALSGKLPAAVQVSHLCASSVIEVGQVSNMHGGLVREEVVRLNNVRDFKVSNT 65
           +E +PES  L GK      +     +S  + G  SNMH   VR+  V  +  + F+ S  
Sbjct: 16  IEMLPESNVLPGKFCVLDDIPKAHVASAKQAGHWSNMHSAKVRD--VGRSIGQGFQDSEI 73

Query: 66  PASVRTWKGKDSLPEREEIVADTLILKGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKTVY 125
              VRT KGK S   +E+   D + LKGS    EE GPSSFSG SHP EP+D DLM+TVY
Sbjct: 74  SVPVRTSKGKSSFLGQEDAKRD-VTLKGSSSLIEEGGPSSFSGASHPPEPVDMDLMRTVY 132

Query: 126 VPISQNKSDAACLMKSLSMKGPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSP 185
           VPI QNK D  CLMKS S+KGPFLEDLSIRVPPKK   AVLSPAESLV+EP +LG LSSP
Sbjct: 133 VPIGQNKPDPGCLMKSFSVKGPFLEDLSIRVPPKKPSPAVLSPAESLVDEPHDLGVLSSP 192

Query: 186 FSVPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCAST 245
           FS+PRASQNTE SLLPPDSEEKECVWDASLPPSGNVSPHSSIDS+GVVTAMSIVNSCAST
Sbjct: 193 FSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSSGVVTAMSIVNSCAST 252

Query: 246 YRSDVITSDGMLSMERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSAN 305
           YRSD     GM+S+ERNCES KGS+RGDSLESAKTS+SRASDSSGLSDDS+WSNITGSAN
Sbjct: 253 YRSD-----GMVSIERNCESAKGSMRGDSLESAKTSVSRASDSSGLSDDSSWSNITGSAN 307

Query: 306 KPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD 365
           KPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELS TRCYFAMKVMD
Sbjct: 308 KPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMD 367

Query: 366 KASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQ 425
           KASLA RKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQ
Sbjct: 368 KASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQ 427

Query: 426 PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV 485
           PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV
Sbjct: 428 PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV 487

Query: 486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRS 545
           SPTLIKT S DSDPS+R    +FCVQPACIEPSSVCIQPACFIPR+FPQK+KKK+ KPRS
Sbjct: 488 SPTLIKT-SYDSDPSKR---AAFCVQPACIEPSSVCIQPACFIPRLFPQKSKKKSPKPRS 543

Query: 546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYG 605
           + GL SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYG
Sbjct: 544 DFGLQSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYG 603

Query: 606 KTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ 665
           KTPFKGSGNRATLFNVVGQQL+FP+SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ
Sbjct: 604 KTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ 663

Query: 666 HPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVSSSSSKKIVGTD-MKSGGKY 724
           HPFFEGVNWALIRCSTPPEVPRPMEAELP KFG VD  GV  SSSK++VGTD +KSGG+Y
Sbjct: 664 HPFFEGVNWALIRCSTPPEVPRPMEAELP-KFGVVDTTGV-GSSSKRMVGTDVVKSGGQY 721

Query: 725 LDFEFF 730
           LDFEFF
Sbjct: 722 LDFEFF 727

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431946|ref|XP_004133761.1| PREDICTED: LOW QUALITY PROTEIN: protein kinase G11A-like [Cucumis sativus]

 Score = 1145 bits (2963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/734 (81%), Positives = 637/734 (86%), Gaps = 23/734 (3%)

Query: 6   MEKVPESKALSGKLPAAVQVSHLCASSVIEVGQVSNMHGGLVREEVVRLNNVRDFKVSNT 65
           +E +PES  L GK      +     +S  + G  SNMH   VR+  V  +  + F+ S  
Sbjct: 16  IEMLPESNVLPGKFCVLDDIPKAHVASAKQAGHWSNMHSAKVRD--VGRSIGQGFQDSEI 73

Query: 66  PASVRTWKGKDSLPEREEIVADTLILKGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKTVY 125
              VRT KGK S   +E+   D + LKGS    EE GPSSFSG SHP EP+D DLM+TVY
Sbjct: 74  SVPVRTSKGKSSFLGQEDAKRD-VTLKGSSSLIEEGGPSSFSGASHPPEPVDMDLMRTVY 132

Query: 126 VPISQNKSDAACLMKSLSMKGPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSP 185
           VPI QNK D  CLMKS S+KGPFLEDLSIRVPPKK   AVLSPAESLV+EP +LG LSSP
Sbjct: 133 VPIGQNKPDPGCLMKSFSVKGPFLEDLSIRVPPKKPSPAVLSPAESLVDEPHDLGVLSSP 192

Query: 186 FSVPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCAST 245
           FS+PRASQNTE SLLPPDSEEKECVWDASLPPSGNVSPHSSIDS+GVVTAMSIVNSCAST
Sbjct: 193 FSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSSGVVTAMSIVNSCAST 252

Query: 246 YRSDVITSDGMLSMERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSAN 305
           YRSD     GM+S+ERNCES KGS+RGDSLESAKTS+SRASDSSGLSDDS+WSNITGSAN
Sbjct: 253 YRSD-----GMVSIERNCESAKGSMRGDSLESAKTSVSRASDSSGLSDDSSWSNITGSAN 307

Query: 306 KPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD 365
           KPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELS TRCYFAMKVMD
Sbjct: 308 KPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMD 367

Query: 366 KASLASRKKLTRAQTEREILQLLDHPFLP--------TLYTHFETDRFSCLVMEYCPGGD 417
           KASLA RKKLTRAQTEREILQLLDHPFLP        TLYTHFETDRFSCLVMEYCPGGD
Sbjct: 368 KASLAIRKKLTRAQTEREILQLLDHPFLPLLDHPFLPTLYTHFETDRFSCLVMEYCPGGD 427

Query: 418 LHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
           LHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF
Sbjct: 428 LHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 487

Query: 478 DLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNK 537
           DLSLRCAVSPTLIKTS  DSDPS+R    +FCVQPACIEPSSVCIQPACFIPR+FPQK+K
Sbjct: 488 DLSLRCAVSPTLIKTS-YDSDPSKRA---AFCVQPACIEPSSVCIQPACFIPRLFPQKSK 543

Query: 538 KKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGI 597
           KK+ KPRS+ GL SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGI
Sbjct: 544 KKSPKPRSDFGLQSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGI 603

Query: 598 FLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK 657
           FLHELLYGKTPFKGSGNRATLFNVVGQQL+FP+SPATSYASRDLIRGLLVKEPQHRLGVK
Sbjct: 604 FLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVK 663

Query: 658 RGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVSSSSSKKIVGTD 717
           RGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELP KFG VD  GV  SSSK++VGTD
Sbjct: 664 RGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELP-KFGVVDTTGV-GSSSKRMVGTD 721

Query: 718 -MKSGGKYLDFEFF 730
            +KSGG+YLDFEFF
Sbjct: 722 VVKSGGQYLDFEFF 735

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504569|ref|XP_003521068.1| PREDICTED: protein kinase G11A-like [Glycine max]

 Score = 1141 bits (2951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/768 (77%), Positives = 633/768 (82%), Gaps = 48/768 (6%)

Query: 6   MEKVPESKALSGKLPAAVQVSHLCASSVIEVGQVSNMH-----GGLVREEVVRLNNVRDF 60
           ME+V E K L   LP  V+VS+   ++  E GQ  N       GG+   EV +L+  RD 
Sbjct: 1   MERVAEPKVLPRTLPILVEVSNSRTAAARESGQRLNRQEVSGVGGISLREVNQLSRTRDV 60

Query: 61  KVSNTP-ASVR----------------------------------TWKGKDSLPER-EEI 84
            V  T  AS+R                                  TWKG  S PE  EE 
Sbjct: 61  HVPITHLASIREVAQLTNARIYLVQEDTGFDARSSEESLTFEPTMTWKGNGSSPEEAEEF 120

Query: 85  VADTLILKGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKTVYVPISQNKSDAACLMKSLSM 144
           V D   LKGS D FE+ G S F+G SHP EP+DTDLM+TV+VPI QNKS+A CL+K+L  
Sbjct: 121 VPDIETLKGSSDSFEDGGSSLFAGASHPPEPVDTDLMRTVFVPIGQNKSEAGCLIKNLPT 180

Query: 145 KGPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSPFSVPRASQNTENSLLPPDS 204
           KGPFLEDLSIRVP KK   AVLSP ESLVEE + +G LS  F  PR  Q+TENSLLPPD+
Sbjct: 181 KGPFLEDLSIRVPAKKPSPAVLSPEESLVEELNGIGNLS--FLGPRTLQSTENSLLPPDA 238

Query: 205 EEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCE 264
           EEKECVWDASLPPSGNVSP SSIDS GVVTAMSIVNSCASTYRSD +TSDGMLS++RNC+
Sbjct: 239 EEKECVWDASLPPSGNVSPLSSIDSIGVVTAMSIVNSCASTYRSDAMTSDGMLSLDRNCD 298

Query: 265 STKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRAR 324
           S KGSVRGDSLESAKTS+SR SDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIR R
Sbjct: 299 SNKGSVRGDSLESAKTSVSRPSDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRLR 358

Query: 325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI 384
           DGILGMSHFRLLKRLGCGDIGSVYLSELS TRCYFAMKVMDKASLASRKKLTR QTEREI
Sbjct: 359 DGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRVQTEREI 418

Query: 385 LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 444
           LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL
Sbjct: 419 LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 478

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGP 504
           ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI+T S D DPS+R  
Sbjct: 479 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRT-SYDGDPSKRA- 536

Query: 505 GGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA 564
           GG+FCVQPACIEPSS+CIQPACFIPR+FPQKN KK+RKPR++ GLPSSTLPELVAEPT A
Sbjct: 537 GGAFCVQPACIEPSSMCIQPACFIPRLFPQKN-KKSRKPRADPGLPSSTLPELVAEPTQA 595

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ
Sbjct: 596 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 655

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPE 684
           QLRFP+SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPE
Sbjct: 656 QLRFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPE 715

Query: 685 VPRPMEAELP-GKFGAVDPVGVSSSSSKKIVGTD-MKSGGKYLDFEFF 730
           VPRPME E+P GK           S+SK+I GTD MKSGGKYLDFEFF
Sbjct: 716 VPRPMENEVPAGKVVGPVDPVGVGSTSKRIAGTDNMKSGGKYLDFEFF 763

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136462|ref|XP_002326866.1| predicted protein [Populus trichocarpa] gi|222835181|gb|EEE73616.1| predicted protein [Populus trichocarpa]

 Score = 1130 bits (2922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/649 (86%), Positives = 594/649 (91%), Gaps = 6/649 (0%)

Query: 87  DTLILKGSDDFFEEAGPSSFSGVSHPAEPIDTDL-MKTVYVPISQNKSDAACLMKSLSMK 145
           D +  KGS D+F+E  P SFSG SHP EPIDTDL MKTVYVPI Q K++  CL+KS+S+K
Sbjct: 3   DVVTSKGSGDYFDEGCPGSFSGASHPPEPIDTDLIMKTVYVPIGQKKAEPRCLVKSMSVK 62

Query: 146 GPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSPFSVPRASQNTENSLLPPDSE 205
           GPFLEDLSIRVPPKK    VLSPAESLVEE ++L AL +PFSVPRASQNTENSLLPPDSE
Sbjct: 63  GPFLEDLSIRVPPKKPSLVVLSPAESLVEETNDLVALPTPFSVPRASQNTENSLLPPDSE 122

Query: 206 EKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCES 265
           E +CVWD SLPPSG+VSPHSSIDSTGVVTAMSIVNSCASTYRSD ITSDGMLS++RNCES
Sbjct: 123 ENDCVWDTSLPPSGDVSPHSSIDSTGVVTAMSIVNSCASTYRSDAITSDGMLSIDRNCES 182

Query: 266 TKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARD 325
           TKGSVRGDSLESAKTS+SRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIR RD
Sbjct: 183 TKGSVRGDSLESAKTSVSRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRTRD 242

Query: 326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL 385
           G LGM+HFRL KRLGCGDIGSVYLSELS TRC+FAMKVMDKASLASRKKLTRAQTEREIL
Sbjct: 243 GFLGMNHFRLFKRLGCGDIGSVYLSELSGTRCFFAMKVMDKASLASRKKLTRAQTEREIL 302

Query: 386 QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLA 445
           QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLA
Sbjct: 303 QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLA 362

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPG 505
           LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI+T S DSDPS+R  G
Sbjct: 363 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRT-SFDSDPSKRAVG 421

Query: 506 GSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR 565
           G+FCVQPACIEPSS CI P+CF+PRIFPQK+KKK RKP  +LGL  S+LPELVAEPTAAR
Sbjct: 422 GAFCVQPACIEPSSACILPSCFVPRIFPQKSKKKNRKPGKDLGLQISSLPELVAEPTAAR 481

Query: 566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
           SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ
Sbjct: 482 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 541

Query: 626 LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEV 685
           LRFPDSPATSYA RDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEV
Sbjct: 542 LRFPDSPATSYAGRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEV 601

Query: 686 PRPMEAELPG-KFGAVDPVG---VSSSSSKKIVGTDMKSGGKYLDFEFF 730
           PRP+E E P  K GAVD +G   V SSS +++ GTD + GG YLDFEFF
Sbjct: 602 PRPVETEPPPVKSGAVDKIGVGIVGSSSKRRMAGTDARPGGNYLDFEFF 650

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	730
UNIPROTKB|Q5I6E9	700	Adi3 "AvrPto-dependent Pto-int	0.898	0.937	0.809	1e-299
TAIR|locus:2055017	765	AT2G44830 [Arabidopsis thalian	0.935	0.892	0.705	6e-254
TAIR|locus:2160922	586	D6PKL2 "D6 protein kinase like	0.761	0.948	0.602	1.7e-176
TAIR|locus:2133837	506	D6PKL1 "D6 protein kinase like	0.636	0.918	0.634	3.5e-162
TAIR|locus:2178388	498	D6PK "D6 protein kinase" [Arab	0.671	0.983	0.613	7.3e-162
TAIR|locus:2091443	578	ATPK7 [Arabidopsis thaliana (t	0.741	0.935	0.519	1.1e-142
TAIR|locus:2174885	499	AT5G40030 [Arabidopsis thalian	0.647	0.947	0.562	5.5e-141
TAIR|locus:2207470	555	AGC1.7 "AGC kinase 1.7" [Arabi	0.628	0.827	0.586	4e-138
TAIR|locus:2049485	949	AT2G36350 [Arabidopsis thalian	0.602	0.463	0.573	8.4e-136
TAIR|locus:2085191	934	KIPK "KCBP-interacting protein	0.709	0.554	0.524	4.7e-135

UNIPROTKB|Q5I6E9 Adi3 "AvrPto-dependent Pto-interacting protein 3" [Solanum lycopersicum (taxid:4081)]

 Score = 2844 (1006.2 bits), Expect = 1.0e-299, Sum P(2) = 1.0e-299
 Identities = 536/662 (80%), Positives = 591/662 (89%)

Query:    69 VRTWKGKDSLPEREEIVADTLILKGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKTVYVPI 128
             ++TWKGK S  E E+++ D   +K SDD  E++G +SF G SHP EP+DTDLM+ VYVPI
Sbjct:    45 IQTWKGKTSYQEEEDLMVDAGTIKRSDDSLEDSGSTSFHGASHPPEPVDTDLMRPVYVPI 104

Query:   129 SQNKSDAACLMKSLSMKGPFLEDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSPFSV 188
              QNK+D  CL+K++S+KGPFL+DLSIR+P  K   ++LSPAESLVEEP++LG +SSPF+V
Sbjct:   105 GQNKADGKCLVKNVSLKGPFLDDLSIRMPNVKPSPSLLSPAESLVEEPNDLGVISSPFTV 164

Query:   189 PRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRS 248
             PR SQNTE SL PPDSEEKEC+WDASLPPSGNVSP SSIDSTGVV +MSIVNSC STYRS
Sbjct:   165 PRPSQNTETSL-PPDSEEKECIWDASLPPSGNVSPLSSIDSTGVVRSMSIVNSCTSTYRS 223

Query:   249 DVITSDGMLSMERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPH 308
             DV+ SDGMLS++RN ESTKGS+RGDSLES KTS+SRASDSSGLSDDSNWSNITGSANKPH
Sbjct:   224 DVLMSDGMLSVDRNYESTKGSIRGDSLESGKTSLSRASDSSGLSDDSNWSNITGSANKPH 283

Query:   309 KGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS 368
             KGNDPRWKAILAIRARDGILGMSHF+LLKRLGCGDIGSVYLSELS TRCYFAMKVMDKAS
Sbjct:   284 KGNDPRWKAILAIRARDGILGMSHFKLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKAS 343

Query:   369 LASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGK 428
             LASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGK
Sbjct:   344 LASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGK 403

Query:   429 HFSEYAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT 488
             HFSEYAARF            HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT
Sbjct:   404 HFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT 463

Query:   489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELG 548
             LI+ SS   DPS+RG   +FCVQPACIEP++VC+QPACF+PR+FPQK+KKKT KPR++ G
Sbjct:   464 LIRISS--DDPSKRG--AAFCVQPACIEPTTVCMQPACFLPRLFPQKSKKKTPKPRADSG 519

Query:   549 LPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTP 608
               ++++PELVAEPT+ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTP
Sbjct:   520 FQANSMPELVAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTP 579

Query:   609 FKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             FKGSGNRATLFNVVGQQL+FPDSPATSYASRDLIRGLLVKEPQ+RLGVKRGATEIKQHPF
Sbjct:   580 FKGSGNRATLFNVVGQQLKFPDSPATSYASRDLIRGLLVKEPQNRLGVKRGATEIKQHPF 639

Query:   669 FEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVXXXXXXXIVGTDMKSGGKYLDFE 728
             FEGVNWALIRCSTPPEVPRP+E + P K+G V+PVGV       +VG D KSGGKYLDFE
Sbjct:   640 FEGVNWALIRCSTPPEVPRPVEPDYPAKYGQVNPVGVGNTSKR-VVGADAKSGGKYLDFE 698

Query:   729 FF 730
             FF
Sbjct:   699 FF 700

GO:0005515 "protein binding" evidence=IPI

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

TAIR|locus:2055017 AT2G44830 [Arabidopsis thaliana (taxid:3702)]

 Score = 2445 (865.7 bits), Expect = 6.0e-254, P = 6.0e-254
 Identities = 503/713 (70%), Positives = 559/713 (78%)

Query:    35 EVGQVSNMHGGXXXXXXXXXXXXXDFK-VSNTPASVRTWKGKDSLPEREEIVA--DTLIL 91
             E+ QV N+H               DF+      +SVRT K K  L E EEI A  D +  
Sbjct:    66 ELSQVLNVHR-EDMMMTQFGGNMNDFQEFEPVVSSVRTMKAKYPLLEIEEIGAADDDVTC 124

Query:    92 KGSDDFFEEAGPSSFSGVSHPAEPIDTDLMKTVYVPISQ-NKSDAACLMKSLSM-KGPFL 149
             KGS+D  EEAG SSF GVSHP EP D DL+ TVYVPIS+ NK D+ CLMKS+S  KGPF+
Sbjct:   125 KGSNDMSEEAGSSSFRGVSHPPEPDDMDLITTVYVPISEKNKPDSVCLMKSMSTTKGPFI 184

Query:   150 EDLSIRVPPKKQISAVLSPAESLVEEPSELGALSSPFSVPRASQNTENSLLPPDSEEKEC 209
             ED+S+ VPPKK    VLSPAES+VEEP+   +LS PFSV RASQNTENSLLPPDS+ KEC
Sbjct:   185 EDISLCVPPKKPSPRVLSPAESIVEEPAT--SLS-PFSVARASQNTENSLLPPDSD-KEC 240

Query:   210 VWDASLPPSGNVSPHSS-IDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCESTKG 268
             VWDASLPPS NVSPHSS ++S  +  AMSI NS ++T  S    SD +LSM++N      
Sbjct:   241 VWDASLPPSTNVSPHSSSVESMNLARAMSIANSSSAT--STTQRSDVVLSMDKNYFDRSI 298

Query:   269 SVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGIL 328
             S+  DS ES KTS SRASDSSGLS++S+WSN TGS NKPHKGNDP W AILAIR RDGIL
Sbjct:   299 SMVLDSFESTKTSASRASDSSGLSEESSWSNFTGSLNKPHKGNDPWWNAILAIRTRDGIL 358

Query:   329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
             GMSHF+LLKRLGCGDIGSVYL+ELS TRC+FA+KVMDKASL  RKKL RAQTER+ILQLL
Sbjct:   359 GMSHFKLLKRLGCGDIGSVYLAELSGTRCHFAVKVMDKASLEDRKKLNRAQTERDILQLL 418

Query:   389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
             DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARF           
Sbjct:   419 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 478

Query:   449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSF 508
              HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT   DSDPSRRG   +F
Sbjct:   479 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT--FDSDPSRRG---AF 533

Query:   509 CVQPACIEPSSVCI-QPACFIPR-IFPQKNKK-KTRKPRSELGLP-SSTLPELVAEPTAA 564
             CVQPAC+EP+S CI QP+CF+PR IFP KNKK K+RK +++     S +LPELVAEP   
Sbjct:   534 CVQPACMEPTSACIIQPSCFLPRSIFPNKNKKNKSRKTQADFFKSHSGSLPELVAEPNT- 592

Query:   565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
             RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIF+HELLYGKTPFKGSGNRATLFNVVG+
Sbjct:   593 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFVHELLYGKTPFKGSGNRATLFNVVGE 652

Query:   625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPE 684
             QL+FP+SPATSYA RDLI+ LLVK+P++RLG KRGATEIKQHPFFEGVNWALIRCSTPPE
Sbjct:   653 QLKFPESPATSYAGRDLIQALLVKDPKNRLGTKRGATEIKQHPFFEGVNWALIRCSTPPE 712

Query:   685 VPRPMEAELPGKFGAVDPVGVXXXXXXXI-------VGTDMKSGGKYLDFEFF 730
             VPR ME E P K+G +DPVG        +          D KSGGK+LDFEFF
Sbjct:   713 VPRQMETEPPPKYGPIDPVGFGSNSKRMMGPPAVSAAAADTKSGGKFLDFEFF 765

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2160922 D6PKL2 "D6 protein kinase like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1714 (608.4 bits), Expect = 1.7e-176, P = 1.7e-176
 Identities = 344/571 (60%), Positives = 408/571 (71%)

Query:   167 SPAESLVEEPSELGALSSPFSVPRASQNTENSLLPPDSEEKECVWDASLPPSGNVSPH-S 225
             S  +S   E  E   L    + PRA    E+  LP    ++        P   ++S    
Sbjct:    24 SSTKSAKAETFEPMQLQRSVTNPRAVGIPESKRLPESFRKRSSDPAVCKPDFSSLSTVLE 83

Query:   226 SIDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCESTKGSVRGDSLESAKTSISRA 285
              +DS  +    +       T  +    SDG  S+ +   S K S R D +ES K+SI R 
Sbjct:    84 HVDSLTIDEKKTSGFGSVKTSSASAKLSDGTSSLGKTSGSAKLSGRLDFMESGKSSICRG 143

Query:   286 SDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIG 345
             S SS +SD+S+ S+ + + NKPHK ND RW+AI A+R RDG+LG+SHFRLLKRLGCGDIG
Sbjct:   144 STSSDVSDESSCSSFSSTVNKPHKANDLRWEAIQAVRVRDGLLGLSHFRLLKRLGCGDIG 203

Query:   346 SVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF 405
             SVYLSELS T+CYFAMKVMDK SLASRKKL RAQTEREILQ LDHPFLPTLYTHFET++F
Sbjct:   204 SVYLSELSGTKCYFAMKVMDKTSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKF 263

Query:   406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRDLKPENVL 465
             SCLVME+CPGGDLHTLRQRQPGKHFSE A +F            HMLG+VYRDLKPENVL
Sbjct:   264 SCLVMEFCPGGDLHTLRQRQPGKHFSEQAVKFYIAESLLALEYLHMLGIVYRDLKPENVL 323

Query:   466 VRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPA 525
             VR+DGHIMLSDFDLSLRC VSPTL+K+++++SDP R+     +CVQPACIEPS  CIQP+
Sbjct:   324 VREDGHIMLSDFDLSLRCLVSPTLVKSAAIESDPLRKNV---YCVQPACIEPS--CIQPS 378

Query:   526 C------FIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPE 579
             C      F PR+F  K+KK  RKP+++       LPELVAEPT ARSMSFVGTHEYLAPE
Sbjct:   379 CTVPTTCFSPRLFSSKSKKD-RKPKNDTANQVRPLPELVAEPTDARSMSFVGTHEYLAPE 437

Query:   580 IIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASR 639
             IIKGEGHGSAVDWWTFGIFL+ELL+G+TPFKGSGNR TLFNVVGQ LRFP++P  S+A+R
Sbjct:   438 IIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSGNRQTLFNVVGQPLRFPETPVVSFAAR 497

Query:   640 DLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGA 699
             DLIRGLL+KEPQ RLG KRGATE+KQHPFFEGVNWALIRC+TPPE+P+P+E E  G    
Sbjct:   498 DLIRGLLMKEPQQRLGFKRGATEVKQHPFFEGVNWALIRCATPPEIPKPVELE-KGAVSV 556

Query:   700 VDPVGVXXXXXXXIVGTDMKSGGKYLDFEFF 730
              +           ++    K    YL+F+FF
Sbjct:   557 AEAPSSQKTAAGLVLNAQ-KGSDNYLEFDFF 586

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

TAIR|locus:2133837 D6PKL1 "D6 protein kinase like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1579 (560.9 bits), Expect = 3.5e-162, P = 3.5e-162
 Identities = 309/487 (63%), Positives = 376/487 (77%)

Query:   248 SDVITSDGMLSMERNCES-TKGSVRGD--SLESAKTSISRASDSSGLSDDSNWSNITGSA 304
             +D ++S   LS   + +S T G V+ +  S +S K++  R S SS +SD+S  S+ +G+ 
Sbjct:    38 ADQVSST--LSFAPSSDSKTGGEVKFNEKSDQSGKSNTCRPSTSSDISDESTCSSFSGN- 94

Query:   305 NKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVM 364
             NKPHK ND RW+AI A+R + G+LG++HFRLLKRLGCGDIG+V+L+EL  TRC+FAMKVM
Sbjct:    95 NKPHKANDVRWEAIQAVRTKHGVLGLNHFRLLKRLGCGDIGTVHLAELHGTRCFFAMKVM 154

Query:   365 DKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQR 424
             DK +LASRKKL RAQTEREILQ LDHPFLPTLY+HFET++FSCLVME+CPGGDLHTLRQR
Sbjct:   155 DKGALASRKKLLRAQTEREILQCLDHPFLPTLYSHFETEKFSCLVMEFCPGGDLHTLRQR 214

Query:   425 QPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA 484
             QPGK FSE AA+F            HMLG++YRDLKPENVLVRDDGH+MLSDFDLSLRC 
Sbjct:   215 QPGKRFSEQAAKFYVAEVLLAMEYLHMLGIIYRDLKPENVLVRDDGHVMLSDFDLSLRCT 274

Query:   485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIE-PSSVCIQPACFIPRIFPQKNKKKTRKP 543
             VSPT+++++ L S+  ++  G  +C QPACI+ PS +     CF PR F  K+KK  +K 
Sbjct:   275 VSPTVVRSTVLASE-GQKNSG--YCAQPACIQQPSCISAPTTCFSPRYFSSKSKKD-KKM 330

Query:   544 RSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL 603
             ++E G   S LPELVAEPT+ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFL+ELL
Sbjct:   331 KNETGNQVSPLPELVAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELL 390

Query:   604 YGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEI 663
             +GKTPFKGSGNRATLFNVVGQ LRFP+SP  S+A+RDLIR LLVKEPQHRL  KRGATE+
Sbjct:   391 FGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRSLLVKEPQHRLAYKRGATEM 450

Query:   664 KQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVXXXXXXXIVGTDMKSGGK 723
             KQHPFFEGVNWAL+RC++PPE+P+P++ E         P           V +D  +   
Sbjct:   451 KQHPFFEGVNWALVRCASPPEIPKPVDYES----APATPAAATSTS----VKSDQSN--- 499

Query:   724 YLDFEFF 730
             YL+F+FF
Sbjct:   500 YLEFDFF 506

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2178388 D6PK "D6 protein kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1576 (559.8 bits), Expect = 7.3e-162, P = 7.3e-162
 Identities = 314/512 (61%), Positives = 387/512 (75%)

Query:   222 SPHSSIDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCESTKGSVRGDSLESAKTS 281
             +P  S+ ++    +MSI N+ A    S +  +D   S +    ++K + +G   ES K+S
Sbjct:     6 TPEGSLTNSS--QSMSI-NTLADQVSSSLSFADP--SSDGKTGNSKINEQG---ESGKSS 57

Query:   282 ISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGC 341
               R S SS +SD+S  S+ + S NKPHK ND RW+AI A+R + G LG++HFRLLKRLGC
Sbjct:    58 TCRPSTSSDISDESTCSSFSSSINKPHKANDVRWEAIQAVRTKHGGLGLNHFRLLKRLGC 117

Query:   342 GDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE 401
             GDIG+V+L+EL+ TRCYFAMKVMDK +LASRKKL RAQTEREILQ LDHPFLPTLY+HFE
Sbjct:   118 GDIGTVHLAELNGTRCYFAMKVMDKTALASRKKLLRAQTEREILQCLDHPFLPTLYSHFE 177

Query:   402 TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRDLKP 461
             T++FSCLVME+CPGGDLHTLRQRQPGK F+E AA+F            HMLG++YRDLKP
Sbjct:   178 TEKFSCLVMEFCPGGDLHTLRQRQPGKRFTEQAAKFYVAEVLLAMEYLHMLGIIYRDLKP 237

Query:   462 ENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIE-PSSV 520
             ENVLVRDDGH+MLSDFDLSLRC VS ++++++++ S+   +    S   QPACI+ PS +
Sbjct:   238 ENVLVRDDGHVMLSDFDLSLRCTVSLSIVRSANVGSEGLSKN-SVSCSQQPACIQQPSCI 296

Query:   521 CIQP-ACFIPRIFPQKNKKKTRKPRSELGLPSST-LPELVAEPTAARSMSFVGTHEYLAP 578
              + P +CF PR F  K+KK  +KP++E G    T LPELVAEPT ARSMSFVGTHEYLAP
Sbjct:   297 SMAPTSCFGPRFFSSKSKKD-KKPKTENGNHQVTPLPELVAEPTGARSMSFVGTHEYLAP 355

Query:   579 EIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYAS 638
             EIIKGEGHGSAVDWWTFGIFL+ELL+GKTPFKGSGNRATLFNVVGQ LRFP+SP  S+A+
Sbjct:   356 EIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAA 415

Query:   639 RDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFG 698
             RDLIR LLVKEPQHRL  KRGATEIKQHPFFEGVNWAL+RC++PPE+P+P++ E      
Sbjct:   416 RDLIRSLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALVRCASPPEIPKPVDLE------ 469

Query:   699 AVDPVGVXXXXXXXIVGTDMKSGGKYLDFEFF 730
             A++P           V +D  +   YL+F+FF
Sbjct:   470 ALNPTPTVPAAASSSVRSDQSN---YLEFDFF 498

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0010540 "basipetal auxin transport" evidence=IGI

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2091443 ATPK7 [Arabidopsis thaliana (taxid:3702)]

 Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
 Identities = 293/564 (51%), Positives = 375/564 (66%)

Query:   180 GALSSPFSVP-RASQNTENSLLPPDSE--EKECVWDASLPPSGNVSPHSSIDSTGVVTAM 236
             G+++S FS+  R ++ +  +LL P+ E    E +  +    S       SI      +  
Sbjct:    25 GSITS-FSIDSRGTKKSMKTLLIPEPEPTSPEVIESSVSSVSAESETPISIIRKKKQSEP 83

Query:   237 SIVNSCASTYRSDVITSDGMLSMERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSN 296
                +S  +T+ ++   S            +   + G  LE     I R S  S +SD+S+
Sbjct:    84 RFYSSPTNTFYTEAKQSFTNTEFSECASISTIGIGGIDLEKNGVMIYRGSIGSDVSDESS 143

Query:   297 WSNITGSANKPHK-GNDPRWKAILAIRARDGI-LGMSHFRLLKRLGCGDIGSVYLSELSS 354
              S ++ +A KPH+  ND RW AI  +R+R G  L    F+L+K+LG GDIG+VYL+EL  
Sbjct:   144 SSGLSNAAYKPHRDNNDKRWVAIQEVRSRVGSSLEAKDFKLIKKLGGGDIGNVYLAELIG 203

Query:   355 TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCP 414
             T   FA+KVM+KA++A+RKKL RAQTE+EILQ LDHPFLPTLY+HFET+  SCLVME+CP
Sbjct:   204 TGVSFAVKVMEKAAIAARKKLVRAQTEKEILQSLDHPFLPTLYSHFETEMNSCLVMEFCP 263

Query:   415 GGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIML 474
             GGDLH+LRQ+Q GK+F E AARF            HMLG++YRDLKPENVLVR+DGHIML
Sbjct:   264 GGDLHSLRQKQRGKYFPEQAARFYVAEVLLAMEYLHMLGIIYRDLKPENVLVREDGHIML 323

Query:   475 SDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSV-----CIQPACFIP 529
             SDFDLSLRCAVSPTL++ +++  +        S+C+QP C++ SS      CIQP CF P
Sbjct:   324 SDFDLSLRCAVSPTLVRFAAITLESK----SSSYCIQPTCVDQSSCIVQPDCIQPVCFTP 379

Query:   530 RIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSA 589
             R     +K K RK  +++      LPEL+AEPT+ARSMSFVGTHEYLAPEIIKGEGHGSA
Sbjct:   380 RFL---SKGKHRKKSNDMSRQIRPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSA 436

Query:   590 VDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE 649
             VDWWTFGIFL+ELL+G TPF+G  NRATLFNVVGQ LRFP+ P  S+A+RDLIRGLLVKE
Sbjct:   437 VDWWTFGIFLYELLFGITPFRGGDNRATLFNVVGQPLRFPEHPNVSFAARDLIRGLLVKE 496

Query:   650 PQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP---RPMEAELPGKFGAVDPVGVX 706
             PQHRL  +RGATEIKQHPFF+ VNWALIRC++PP++P   +PM+     + G     G  
Sbjct:   497 PQHRLAYRRGATEIKQHPFFQSVNWALIRCTSPPQIPQPVKPMDQAHSVRHGFSQGHGHV 556

Query:   707 XXXXXXIVGTDMKSGGKYLDFEFF 730
                    V  D+K  G YL+ +FF
Sbjct:   557 GYDKPPTV--DVKPSGNYLEIDFF 578

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2174885 AT5G40030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
 Identities = 286/508 (56%), Positives = 357/508 (70%)

Query:   239 VNSCASTYRSDVITS--DGMLSMERNCESTKGSVRGDSLESAKTSISRASDSSGL----S 292
             +  C+S+  ++   S   G  S + +   ++     +S+  +  S +  S  + L    S
Sbjct:    11 LQDCSSSNYNNANASPVSGSASFKTSSNGSEDVRLNNSISLSFCSSNSVSSEANLEKTQS 70

Query:   293 DDSNWSNITG--SANKPHKGNDPRWKAILAIR-ARDGILGMSHFRLLKRLGCGDIGSVYL 349
              D+N +N     + +KPHKGND RW AI  ++ +++  LG+ HFRLLK+LGCGDIGSVYL
Sbjct:    71 FDANEANFKRVFAPSKPHKGNDLRWDAIQNVKCSKNEDLGLGHFRLLKKLGCGDIGSVYL 130

Query:   350 SELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV 409
             +EL    C+FAMKVMDK  L  RKKL RAQTEREIL LLDHPFLPTLY+HFET++FSCL+
Sbjct:   131 AELREMGCFFAMKVMDKGMLIGRKKLVRAQTEREILGLLDHPFLPTLYSHFETEKFSCLL 190

Query:   410 MEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDD 469
             ME+C GGDLH LRQ+QPGKHFSE AARF            HM+GVVYRDLKPENV+VR+D
Sbjct:   191 MEFCSGGDLHILRQKQPGKHFSELAARFYASEVLLALEYLHMMGVVYRDLKPENVMVRED 250

Query:   470 GHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSS----VCIQPA 525
             GHIMLSDFDLSL+  VSPTLI+++S    PS      S+C+QP CI+PS      CIQP+
Sbjct:   251 GHIMLSDFDLSLQSFVSPTLIQSTS---QPSCHI--ASYCIQPPCIDPSCKLPVACIQPS 305

Query:   526 CFIPRIFPQKNKK-KTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGE 584
             CF PR    K +K KT K  S+      +LP L+AEPTAARSMSFVGTHEYLAPEII+G+
Sbjct:   306 CFKPRFLNNKPRKAKTEKAGSD------SLPMLIAEPTAARSMSFVGTHEYLAPEIIRGD 359

Query:   585 GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRG 644
             GHGS+VDWWTFGIFL+ELL GKTPFKG+GNR TLFNVVGQ L+FP+  + S+A++DLIRG
Sbjct:   360 GHGSSVDWWTFGIFLYELLTGKTPFKGNGNRETLFNVVGQPLKFPEG-SISFAAKDLIRG 418

Query:   645 LLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKF--GAVDP 702
             LL K+P+ RLG K+GATEIKQHPFF  VNWALIR +TPPE+P+P++  +  +    +V  
Sbjct:   419 LLTKDPKKRLGFKKGATEIKQHPFFNNVNWALIRSTTPPEIPKPIDLSILNETLKSSVQQ 478

Query:   703 VGVXXXXXXXIVGTDMKSGGKYLDFEFF 730
              G           +D  S G YLDFEFF
Sbjct:   479 QGKHSKQ------SD-SSSGPYLDFEFF 499

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2207470 AGC1.7 "AGC kinase 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1352 (481.0 bits), Expect = 4.0e-138, P = 4.0e-138
 Identities = 286/488 (58%), Positives = 345/488 (70%)

Query:   265 STKGSVRGDSLESAKT--SISRASDSSGLSDDSNWSNITGS-ANKPHKGNDPRWKAILAI 321
             S+ GS   +S  +  T  + + ++++S +S  SN    T S  +KPH G D RW A+  +
Sbjct:    75 SSPGSNMTESQSNLNTKPNNNNSNNNSNMSSRSNSIESTSSNPSKPHTGGDIRWDAVNTL 134

Query:   322 RARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTE 381
              ++   LG+S FRLLKRLG GDIGSVYL EL  T  YFAMKVMDKASLASR KL RAQTE
Sbjct:   135 TSKGVQLGISDFRLLKRLGYGDIGSVYLVELRGTITYFAMKVMDKASLASRNKLLRAQTE 194

Query:   382 REILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXX 441
             REIL  LDHPFLPTLY+HFETD+F CLVME+C GG+L++LRQ+QP K F+E AARF    
Sbjct:   195 REILSQLDHPFLPTLYSHFETDKFYCLVMEFCGGGNLYSLRQKQPNKCFTEDAARFFASE 254

Query:   442 XXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSR 501
                     HMLG+VYRDLKPENVLVRDDGHIMLSDFDLSLRC+VSPTL+K+SS+ +    
Sbjct:   255 VLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCSVSPTLVKSSSVHA---- 310

Query:   502 RGPGGSFCVQPACI--EPSSV--CIQPACFIPRIFPQKNKKKTRKPRSELGL-PSSTLPE 556
                GGS   +P  +  E ++V  CIQP+ F PRI   ++ KK RK +S+ GL  + ++PE
Sbjct:   311 -AGGGSGSSRPVGLIDEDAAVQGCIQPSTFFPRIL--QSSKKNRKAKSDFGLFVNGSMPE 367

Query:   557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA 616
             L+AEPT  +SMSFVGTHEYLAPEII+GEGHGSAVDWWTFGIF++ELLYG TPFKG GNRA
Sbjct:   368 LMAEPTNVKSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFIYELLYGATPFKGQGNRA 427

Query:   617 TLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL 676
             TL NV+GQ LRFP+ P  S A+RDLI+GLLVKEPQ R+  KRGATEIKQHPFFEGVNWAL
Sbjct:   428 TLHNVIGQALRFPEVPHVSSAARDLIKGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWAL 487

Query:   677 IRCSTPPEVPRPME-----AELPGKFGAVDPVGVXXXXXX----XIVGTDMKSGGK---- 723
             IR +TPP VP P++     ++      AVD  G              G D K  G     
Sbjct:   488 IRSATPPHVPEPVDFSCYASKDKESMAAVDGGGKKNNNGAGGGCSTGGGDNKPNGDCNDP 547

Query:   724 -YLDFEFF 730
              Y+DFE+F
Sbjct:   548 DYIDFEYF 555

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI;RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

TAIR|locus:2049485 AT2G36350 [Arabidopsis thaliana (taxid:3702)]

 Score = 1302 (463.4 bits), Expect = 8.4e-136, Sum P(2) = 8.4e-136
 Identities = 264/460 (57%), Positives = 322/460 (70%)

Query:   277 SAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLL 336
             S+K S+   S S+ +S++SN S  +   NKPH   D RW+A+  ++ + G LG+ HF LL
Sbjct:   504 SSKNSLGDYSSSTSMSEESNLSRFS-CGNKPHMSMDVRWEAVKHVKLQYGSLGLRHFNLL 562

Query:   337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTL 396
             K+LGCGDIG+VYL+EL  T C FA+KVMD   LA RKK  RAQ ER IL++LDHPFLPTL
Sbjct:   563 KKLGCGDIGTVYLAELVGTNCLFAIKVMDNEFLARRKKTPRAQAERAILKMLDHPFLPTL 622

Query:   397 YTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVY 456
             Y  F +D  SCLVMEYCPGGDLH LRQ+Q  + FSE A RF            HMLGV+Y
Sbjct:   623 YAQFTSDNLSCLVMEYCPGGDLHVLRQKQLSRCFSEPATRFYVAEILLALEYLHMLGVIY 682

Query:   457 RDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK-TSSLDSDPSRR-GP-GGSFCVQPA 513
             RDLKPEN+LVR+DGHIML+DFDLSLRCAV+PTL++ TS  + DP+R  GP   S C+QP 
Sbjct:   683 RDLKPENILVREDGHIMLTDFDLSLRCAVNPTLLRSTSPPEKDPARMSGPYSTSNCIQPL 742

Query:   514 CIEPSSVCIQPACFIPRIFP-QKNKKKTRKPRSE--LGLPSSTLPELVAEPTAARSMSFV 570
             CIEPS  C  P CF PR+   Q   +K RKP+    L     +LP+LVAEPT ARS SFV
Sbjct:   743 CIEPS--CRVP-CFSPRLLSTQARNQKPRKPKRPDLLTQQFRSLPQLVAEPTEARSNSFV 799

Query:   571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
             GTHEYLAPEIIKGEGHG+AVDWWTFG+ L+ELLYGKTPFKG  N  TL NVV Q L+FPD
Sbjct:   800 GTHEYLAPEIIKGEGHGAAVDWWTFGVLLYELLYGKTPFKGYDNEETLSNVVYQNLKFPD 859

Query:   631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPME 690
             SP  S+ +++LIR LLVK+P+ RLG ++GA EIK+HPFFEG+NWALIRC+ PPE+P   +
Sbjct:   860 SPLVSFQAKELIRRLLVKDPESRLGSEKGAAEIKRHPFFEGLNWALIRCAIPPELPDIYD 919

Query:   691 AELPGKFGAVDPVGVXXXXXXXIVGTDMKSGGKYLDFEFF 730
                 G   A  P G            + K+ G +L+FE F
Sbjct:   920 N---GATEATSPEGNNRYL-------ECKAIGDHLEFELF 949

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

TAIR|locus:2085191 KIPK "KCBP-interacting protein kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
 Identities = 287/547 (52%), Positives = 359/547 (65%)

Query:   201 PPD--SEEKECVWDASLPPSGNVSPHSSID--STGVVTAMSIVNSCASTYRSDVITSD-- 254
             PP   S     +   SL    N   H   D  S+G         +     + DV +S+  
Sbjct:   400 PPSYTSSHNPKICTDSLSSVSNKEAHQGSDENSSGSCNVSQSSEADIVIMKQDVSSSNNS 459

Query:   255 GMLSM-ERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDP 313
             G+ +M E+  E+   S + +   S+K S+   S S+ +S++SN S  +   NKPH   D 
Sbjct:   460 GIGAMVEKETENPTSSEKFEFSLSSKDSLGDYSRSTSISEESNLSRFS-CGNKPHMSMDV 518

Query:   314 RWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRK 373
             RW+AI  I+ + G LG+ HF LLK+LGCGDIG+VYL+EL  T C FA+KVMD   LA RK
Sbjct:   519 RWEAIKHIKVQYGSLGLRHFNLLKKLGCGDIGTVYLAELIGTNCLFAIKVMDNEFLARRK 578

Query:   374 KLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEY 433
             K  RAQ EREIL++LDHPFLPTLY  F +D  SCLVMEYCPGGDLH LRQ+Q G+ F E 
Sbjct:   579 KSPRAQAEREILKMLDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRCFPEP 638

Query:   434 AARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS 493
             AARF            HMLG++YRDLKPEN+LVR+DGHIML+DFDLSLRCAV+PTL++++
Sbjct:   639 AARFYVAEILLALEYLHMLGIIYRDLKPENILVREDGHIMLTDFDLSLRCAVNPTLVRSN 698

Query:   494 SLDS-DPSR-RGP-GGSFCVQPACI-EPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGL 549
             S    DP+R  GP   S C+QP CI EPS  C Q +CF PR+    N+++ RKP+    L
Sbjct:   699 SPPGKDPARISGPYNTSNCIQPFCITEPS--C-QVSCFSPRL--SSNQQQGRKPKRGDHL 753

Query:   550 P------SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL 603
                    S +LP+LVAEPT ARS SFVGTHEYLAPEIIKGEGHG+AVDWWTFG+ L+ELL
Sbjct:   754 SKTQQHLSRSLPQLVAEPTEARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVLLYELL 813

Query:   604 YGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEI 663
             YGKTPFKG  N  TL NVV Q L+FPDSP  S+ ++DLIRGLLVKEP++RLG ++G+ EI
Sbjct:   814 YGKTPFKGYNNDETLANVVLQNLKFPDSPLVSFQAKDLIRGLLVKEPENRLGSEKGSVEI 873

Query:   664 KQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVXXXXXXXIVGTDMKSGGK 723
             K+HPFFEG+NWALIRC+ PPE+P   E    G   A D  G            + K+ G 
Sbjct:   874 KRHPFFEGLNWALIRCAIPPELPDFYEYG-GGPEAAADSPGGSNNRYL-----ECKAIGD 927

Query:   724 YLDFEFF 730
             +L+FE F
Sbjct:   928 HLEFELF 934

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.914
3rd Layer	2.7.11	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	730
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	1e-175
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	6e-72
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	9e-72
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	6e-58
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	1e-57
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	3e-55
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	2e-54
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-51
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	4e-49
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	2e-48
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	1e-43
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-43
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	4e-43
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	6e-42
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	7e-41
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	2e-38
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	2e-38
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-38
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	5e-37
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	7e-36
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	8e-36
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	1e-35
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	1e-35
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	6e-35
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	1e-34
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	1e-34
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	5e-34
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	1e-33
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	3e-33
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	4e-33
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-32
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	3e-32
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	3e-32
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	5e-32
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	1e-31
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-31
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	6e-31
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	8e-31
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	1e-30
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	1e-30
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	2e-30
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	2e-30
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	3e-30
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	5e-30
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	5e-30
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	1e-29
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-29
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	4e-29
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	1e-28
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	2e-28
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	4e-28
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	9e-28
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	9e-28
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	1e-27
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	1e-27
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	2e-27
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	3e-27
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	7e-27
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	7e-27
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	1e-26
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	2e-26
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	4e-26
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	7e-26
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	8e-26
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	9e-26
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	3e-25
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-25
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	3e-25
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	6e-25
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	7e-25
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	8e-25
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	8e-25
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	9e-25
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	1e-24
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	1e-24
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	1e-24
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	2e-24
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	2e-24
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	3e-24
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	3e-24
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	4e-24
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	5e-24
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	6e-24
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	9e-24
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	1e-23
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	1e-23
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	2e-23
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	2e-23
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	2e-23
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	4e-23
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	4e-23
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	6e-23
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	7e-23
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	7e-23
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	5e-22
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	6e-22
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	6e-22
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	9e-22
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	1e-21
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	1e-21
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	1e-21
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	2e-21
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-21
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	2e-21
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	7e-21
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	9e-21
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	9e-21
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	1e-20
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	2e-20
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	4e-20
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	4e-20
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	5e-20
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	5e-20
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	8e-20
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	9e-20
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	9e-20
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	2e-19
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	3e-19
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	8e-19
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	1e-18
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	2e-18
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	3e-18
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	3e-18
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	3e-18
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	6e-18
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	7e-18
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	8e-18
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	1e-17
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	2e-17
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	3e-17
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	3e-17
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	3e-17
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	4e-17
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	9e-17
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	9e-17
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	1e-16
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	1e-16
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	2e-16
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	4e-16
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	9e-16
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	1e-15
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-15
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-15
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-15
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	3e-15
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	3e-15
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	4e-15
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	9e-15
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	1e-14
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	2e-14
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	2e-14
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	3e-14
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	5e-14
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	7e-14
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	7e-14
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	8e-14
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	9e-14
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	9e-14
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	1e-13
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	1e-13
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	2e-13
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	2e-13
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	4e-13
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	4e-13
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	5e-13
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	6e-13
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	9e-13
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	1e-12
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	2e-12
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	2e-12
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	4e-12
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	9e-12
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	9e-12
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	1e-11
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	1e-11
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-11
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-11
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-11
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	2e-11
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	2e-11
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	3e-11
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	3e-11
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	4e-11
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	4e-11
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	7e-11
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	9e-11
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	1e-10
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	2e-10
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	2e-10
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	2e-10
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-10
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	3e-10
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	5e-10
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	6e-10
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	8e-10
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-09
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	1e-09
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	1e-09
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	2e-09
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	2e-09
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	2e-09
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	2e-09
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	3e-09
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	3e-09
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	3e-09
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	3e-09
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	3e-09
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	4e-09
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	4e-09
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	5e-09
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	6e-09
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	8e-09
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	8e-09
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	9e-09
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-08
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-08
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-08
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	2e-08
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	2e-08
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	2e-08
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	3e-08
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	5e-08
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	6e-08
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	6e-08
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	6e-08
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	7e-08
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	7e-08
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	9e-08
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-07
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	1e-07
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	1e-07
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	1e-07
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	1e-07
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	1e-07
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-07
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	2e-07
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-07
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	2e-07
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-07
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-07
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	2e-07
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	2e-07
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	3e-07
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-07
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	4e-07
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	4e-07
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	4e-07
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	5e-07
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	5e-07
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	5e-07
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	6e-07
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	6e-07
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	6e-07
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	7e-07
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	8e-07
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	8e-07
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	8e-07
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	9e-07
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	1e-06
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	1e-06
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	1e-06
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	1e-06
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	1e-06
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-06
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	2e-06
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	2e-06
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	2e-06
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	2e-06
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	2e-06
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	2e-06
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	2e-06
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	3e-06
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	3e-06
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	3e-06
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	3e-06
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	3e-06
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	3e-06
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	3e-06
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	4e-06
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	4e-06
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	5e-06
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	5e-06
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	6e-06
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	6e-06
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	7e-06
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	7e-06
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	7e-06
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	8e-06
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	8e-06
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	9e-06
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	9e-06
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	1e-05
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	1e-05
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	1e-05
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	1e-05
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	1e-05
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	1e-05
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	1e-05
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	1e-05
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	1e-05
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-05
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-05
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	2e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	2e-05
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	2e-05
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	3e-05
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	3e-05
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	3e-05
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	3e-05
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	3e-05
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	4e-05
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	4e-05
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	5e-05
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	5e-05
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	6e-05
PLN03224	507	PLN03224, PLN03224, probable serine/threonine prot	6e-05
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	6e-05
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	7e-05
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	8e-05
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	9e-05
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	1e-04
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	1e-04
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	1e-04
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	1e-04
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	1e-04
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	1e-04
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-04
cd08227	327	cd08227, PK_STRAD_alpha, Pseudokinase domain of ST	1e-04
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	2e-04
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	2e-04
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-04
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	2e-04
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	2e-04
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	2e-04
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	2e-04
PHA03211	461	PHA03211, PHA03211, serine/threonine kinase US3; P	2e-04
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	2e-04
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	2e-04
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	3e-04
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	3e-04
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	3e-04
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	3e-04
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	3e-04
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	4e-04
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	4e-04
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	4e-04
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	4e-04
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	4e-04
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	4e-04
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	6e-04
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	7e-04
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	7e-04
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	7e-04
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	7e-04
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	7e-04
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	8e-04
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	8e-04
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	8e-04
cd08226	328	cd08226, PK_STRAD_beta, Pseudokinase domain of STE	8e-04
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	0.001
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	0.001
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	0.001
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	0.001
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	0.001
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	0.001
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	0.001
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	0.001
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	0.001
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	0.001
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	0.001
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	0.001
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	0.001
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	0.002
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	0.002
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	0.002
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	0.002
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	0.002
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	0.002
PHA03210	501	PHA03210, PHA03210, serine/threonine kinase US3; P	0.002
COG0478	304	COG0478, COG0478, RIO-like serine/threonine protei	0.002
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	0.002
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	0.002
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	0.002
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	0.002
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	0.002
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	0.002
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	0.003
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	0.003
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	0.003
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	0.003
PRK14879	211	PRK14879, PRK14879, serine/threonine protein kinas	0.003
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	0.003
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	0.004
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	0.004
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	0.004
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	0.004
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	0.004
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	0.004
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	0.004
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	0.004
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	0.004
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	0.004

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score =  504 bits (1299), Expect = e-175
 Identities = 184/358 (51%), Positives = 224/358 (62%), Gaps = 47/358 (13%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
            HF+ +K LG GD+G V+L  L  T   FA+KV+DK  +  R K+ R  TE+EIL  LDH
Sbjct: 1   KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDH 60

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           PFLPTLY  F+T+ + CLVM+YCPGG+L  L QRQPGK  SE  ARFYAAEVLLALEYLH
Sbjct: 61  PFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLH 120

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCV 510
           +LG+VYRDLKPEN+L+ + GHIMLSDFDLS +  V P  +  +                 
Sbjct: 121 LLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSS-------- 172

Query: 511 QPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV 570
                                                   +S   E  +E  + RS SFV
Sbjct: 173 ---------------------------------------VNSIPSETFSEEPSFRSNSFV 193

Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT EY+APE+I G+GHGSAVDWWT GI L+E+LYG TPFKGS    T  N++ +++ FP 
Sbjct: 194 GTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDETFSNILKKEVTFPG 253

Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRP 688
           SP  S ++RDLIR LLVK+P  RLG KRGA EIKQHPFF GVNWALIR +TPP +PRP
Sbjct: 254 SPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGVNWALIRHTTPPIIPRP 311

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score =  237 bits (607), Expect = 6e-72
 Identities = 119/356 (33%), Positives = 177/356 (49%), Gaps = 55/356 (15%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F ++K +G G  G V+L     T   +AMKV+ K+ +  R ++   + ER+IL   D P+
Sbjct: 3   FEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPW 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  LY  F+ +    LVMEY PGGDL  L  R+    F E  ARFY AE++LAL+ +H L
Sbjct: 63  IVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVHKL 120

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQP 512
           G ++RD+KP+N+L+  DGHI L+DF L  +      + K    +   +            
Sbjct: 121 GFIHRDIKPDNILIDADGHIKLADFGLCKK------MNKAKDREYYLNDS-------HNL 167

Query: 513 ACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT 572
              +   V         R    K ++                          R+ S VGT
Sbjct: 168 LFRDNVLV---------RRRDHKQRRV-------------------------RANSTVGT 193

Query: 573 HEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQLRFPD 630
            +Y+APE+++G  +G   DWW+ G+ L+E+LYG  PF     + T   ++   + LRFP 
Sbjct: 194 PDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPP 253

Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP 686
            P  S  + DLI  LL  +P+ RLG      EIK HPFF+G++W  +R + PP VP
Sbjct: 254 DPPVSPEAIDLICRLLC-DPEDRLG---SFEEIKSHPFFKGIDWENLRETKPPFVP 305

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score =  234 bits (600), Expect = 9e-72
 Identities = 106/341 (31%), Positives = 161/341 (47%), Gaps = 67/341 (19%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HP 391
           F+  K +G G   +V L++   T   +A+K++DK  L   KK+   + E+E+L  L+ HP
Sbjct: 3   FKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHP 62

Query: 392 FLPTLYTHFETDRFSCL--VMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
            +  LY  F+ +    L  V+EY P G+L   +R+        E   RFYAAE+LLALEY
Sbjct: 63  GIIKLYYTFQDE--ENLYFVLEYAPNGELLQYIRKY---GSLDEKCTRFYAAEILLALEY 117

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSF 508
           LH  G+++RDLKPEN+L+  D HI ++DF                            G+ 
Sbjct: 118 LHSKGIIHRDLKPENILLDKDMHIKITDF----------------------------GT- 148

Query: 509 CVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS 568
               A +   +   +           + +K  R+                         S
Sbjct: 149 ----AKVLDPNSSPESNKGDATNIDSQIEKNRRRFA-----------------------S 181

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           FVGT EY++PE++  +  G + D W  G  ++++L GK PF+GS    T   ++  +  F
Sbjct: 182 FVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSF 241

Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           P +      ++DLI  LLV +PQ RLGV  G  E+K HPFF
Sbjct: 242 PPNF--PPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHPFF 280

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score =  200 bits (511), Expect = 6e-58
 Identities = 119/358 (33%), Positives = 178/358 (49%), Gaps = 37/358 (10%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  +K +G G  G V L +   T   +AMK + K+ +  + +L   + ER++L   D P+
Sbjct: 3   FHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPW 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           + +LY  F+  ++  L+ME+ PGGDL T+  +     FSE   RFY AE +LA+E +H L
Sbjct: 63  VVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIKY--DTFSEDVTRFYMAECVLAIEAVHKL 120

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQP 512
           G ++RD+KP+N+L+   GHI LSDF L      S    K    DS   ++        + 
Sbjct: 121 GFIHRDIKPDNILIDRGGHIKLSDFGL------STGFHKQH--DSAYYQK-LLQGKSNKN 171

Query: 513 ACIEPSSVCIQPACFIPRIFPQKNKKKT-RKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                +SV +     I      K++  T +K R  +                  + S VG
Sbjct: 172 RIDNRNSVAVDS---INLTMSSKDQIATWKKNRRLM------------------AYSTVG 210

Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQLRFP 629
           T +Y+APEI   +G+G   DWW+ G  + E L G  PF    +  T   ++   + L FP
Sbjct: 211 TPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHETYRKIINWRETLYFP 270

Query: 630 DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPR 687
           D    S  + DLIR L+    ++RLG + GA EIK HPFF GV+W  IR    P +P+
Sbjct: 271 DDIHLSVEAEDLIRRLIT-NAENRLG-RGGAHEIKSHPFFRGVDWDTIRQIRAPFIPQ 326

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score =  199 bits (509), Expect = 1e-57
 Identities = 113/366 (30%), Positives = 172/366 (46%), Gaps = 64/366 (17%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  +K +G G  G V L +   T   +AMK + K+ +  ++++   + ER+IL   D+P+
Sbjct: 3   FESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPW 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  LY  F+ + +  L+MEY PGGD+ TL  ++    F+E   RFY AE +LA++ +H L
Sbjct: 63  VVKLYYSFQDENYLYLIMEYLPGGDMMTLLMKK--DTFTEEETRFYIAETILAIDSIHKL 120

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS--LRCAVSPT----LIKTSSLDSDPSRRGPGG 506
           G ++RD+KP+N+L+   GHI LSDF L   L+ +        L      +          
Sbjct: 121 GYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNF--------- 171

Query: 507 SFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRK----PRSELGLPSSTLPELVAEPT 562
                                    F  K     RK     R+   L  ST         
Sbjct: 172 -----------------------LDFISKPMSSKRKAETWKRNRRALAYST--------- 199

Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
                  VGT +Y+APE+    G+    DWW+ G+ ++E+L G  PF     + T   ++
Sbjct: 200 -------VGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKII 252

Query: 623 G--QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCS 680
              + L+FPD    S  ++DLI+ L   E + RLG   G  EIK HPFF+GV+W  IR  
Sbjct: 253 NWKETLQFPDEVPLSPEAKDLIKRLCC-EAERRLGNN-GVNEIKSHPFFKGVDWEHIRER 310

Query: 681 TPPEVP 686
             P +P
Sbjct: 311 PAPIIP 316

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score =  189 bits (483), Expect = 3e-55
 Identities = 69/142 (48%), Positives = 93/142 (65%), Gaps = 2/142 (1%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G V L     T   +AMKV+ K  +  RK++    TER IL  ++HPF+  L+ 
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHY 60

Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRD 458
            F+T+    LV+EY PGG+L +   ++    FSE  ARFYAAE++LALEYLH LG++YRD
Sbjct: 61  AFQTEEKLYLVLEYAPGGELFSHLSKE--GRFSEERARFYAAEIVLALEYLHSLGIIYRD 118

Query: 459 LKPENVLVRDDGHIMLSDFDLS 480
           LKPEN+L+  DGHI L+DF L+
Sbjct: 119 LKPENILLDADGHIKLTDFGLA 140

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score =  191 bits (486), Expect = 2e-54
 Identities = 120/385 (31%), Positives = 176/385 (45%), Gaps = 44/385 (11%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           S F  +K +G G  G V L     T   +AMK + KA +  R +    + ER+IL   D+
Sbjct: 1   SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADN 60

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
            ++  LY  F+       VM+Y PGGD+ +L  R     F E  ARFY AE+  A+E +H
Sbjct: 61  EWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRL--GIFEEDLARFYIAELTCAIESVH 118

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDL--SLRCAVSPTLIKTSSLDSDPSRRGPGGSF 508
            +G ++RD+KP+N+L+  DGHI L+DF L    R               D      G   
Sbjct: 119 KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWT------------HDSKYYQKGDH- 165

Query: 509 CVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS 568
             +   +EPS    +      +   ++ K++ ++                     A S+ 
Sbjct: 166 -HRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQR-------------------CLAHSL- 204

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQL 626
            VGT  Y+APE++   G+    DWW+ G+ L+E+L G+ PF       T   V+     L
Sbjct: 205 -VGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKVINWETTL 263

Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA-LIRCSTPPEV 685
             P     S  + DLI   L    + RLG K GA EIK HPFF+G+++A LIR    P +
Sbjct: 264 HIPSQAKLSREASDLILR-LCCGAEDRLG-KNGADEIKAHPFFKGIDFASLIRRQKAPYI 321

Query: 686 PRPMEAELPGKFGAVDPVGVSSSSS 710
           P+         F  VDP  + S  S
Sbjct: 322 PKITHPTDTSNFDPVDPEKLRSDDS 346

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  180 bits (458), Expect = 1e-51
 Identities = 66/148 (44%), Positives = 92/148 (62%), Gaps = 4/148 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + +L++LG G  G VYL+    T    A+KV+ K  +  +K   R   E +IL+ L HP 
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKI--KKDRERILREIKILKKLKHPN 58

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  LY  FE +    LVMEYC GGDL  L +++     SE  ARFY  ++L ALEYLH  
Sbjct: 59  IVRLYDVFEDEDKLYLVMEYCEGGDLFDLLKKR--GRLSEDEARFYLRQILSALEYLHSK 116

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           G+V+RDLKPEN+L+ +DGH+ L+DF L+
Sbjct: 117 GIVHRDLKPENILLDEDGHVKLADFGLA 144

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score =  173 bits (442), Expect = 4e-49
 Identities = 69/146 (47%), Positives = 91/146 (62%), Gaps = 4/146 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  +K LG G  G V L     +  Y+A+K++ KA +   K++     E+ ILQ + HPF
Sbjct: 3   FEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPF 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
           L  LY  F+ D    LVMEY PGG+L   LR+      F E  ARFYAA+V+LALEYLH 
Sbjct: 63  LVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKSG---RFPEPVARFYAAQVVLALEYLHS 119

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDF 477
           L +VYRDLKPEN+L+  DG+I ++DF
Sbjct: 120 LDIVYRDLKPENLLLDSDGYIKITDF 145

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score =  173 bits (440), Expect = 2e-48
 Identities = 107/356 (30%), Positives = 164/356 (46%), Gaps = 77/356 (21%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F +   +G G  G V +    +T   +AMKVM K+ L +++ ++  + ER+IL + + P+
Sbjct: 3   FDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPW 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +P L   F+      LVMEY PGGDL +L  R   + F E  A+FY AE++LA+  +H +
Sbjct: 63  IPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQ-FDEDMAQFYLAELVLAIHSVHQM 121

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQP 512
           G V+RD+KPENVL+   GHI L+DF  + R            L ++              
Sbjct: 122 GYVHRDIKPENVLIDRTGHIKLADFGSAAR------------LTAN-------------- 155

Query: 513 ACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT 572
                                     K    +  +G P    PE++       +M+  G 
Sbjct: 156 --------------------------KMVNSKLPVGTPDYIAPEVLT------TMNGDGK 183

Query: 573 HEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ--LRFPD 630
             Y           G   DWW+ G+  +E++YG++PF    +  T  N++  Q  L+FP+
Sbjct: 184 GTY-----------GVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPE 232

Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP 686
            P  S    DLI+ LL    + RLG +     +  HPFF  ++W  IR S PP VP
Sbjct: 233 DPKVSSDFLDLIQSLLCG-QKERLGYEG----LCCHPFFSKIDWNNIRNSLPPFVP 283

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score =  161 bits (408), Expect = 1e-43
 Identities = 110/357 (30%), Positives = 173/357 (48%), Gaps = 50/357 (14%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  LK +G G  G V L +   T   +AMK++ KA +  ++++   + ER+IL   D  +
Sbjct: 3   FESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAW 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  ++  F+  R   L+ME+ PGGD+ TL  ++     SE A +FY AE +LA++ +H L
Sbjct: 63  VVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKK--DTLSEEATQFYIAETVLAIDAIHQL 120

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQP 512
           G ++RD+KP+N+L+   GH+ LSDF L      +       +L  +P             
Sbjct: 121 GFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNP------------- 167

Query: 513 ACIEPSSVCIQPACFIPRIFPQKNKKKT-RKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                      P+ F  +    K K +T +K R +L                  + S VG
Sbjct: 168 -----------PSDFSFQNMNSKRKAETWKKNRRQL------------------AYSTVG 198

Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQLRFP 629
           T +Y+APE+    G+    DWW+ G+ ++E+L G  PF     + T   V+   + L FP
Sbjct: 199 TPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYRKVMNWKETLVFP 258

Query: 630 DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP 686
                S  ++DLI      + ++R+G   G  EIK HPFFEGV+W  IR   P  +P
Sbjct: 259 PEVPISEKAKDLILRFCT-DSENRIG-SNGVEEIKSHPFFEGVDWGHIR-ERPAAIP 312

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score =  157 bits (400), Expect = 2e-43
 Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 2/139 (1%)

Query: 342 GDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE 401
           G  G V+L++  ST   +A+KV+ KA +  + ++ +  TER+IL     P++  LY  F+
Sbjct: 4   GAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQ 63

Query: 402 TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKP 461
             +   LVMEY PGGDL +L     G    E  AR Y AE++LALEYLH  G+++RDLKP
Sbjct: 64  GKKNLYLVMEYLPGGDLASL-LENVG-SLDEDVARIYIAEIVLALEYLHSNGIIHRDLKP 121

Query: 462 ENVLVRDDGHIMLSDFDLS 480
           +N+L+  +GH+ L+DF LS
Sbjct: 122 DNILIDSNGHLKLTDFGLS 140

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score =  160 bits (405), Expect = 4e-43
 Identities = 128/415 (30%), Positives = 191/415 (46%), Gaps = 57/415 (13%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           S F  +K LG G  G V L+    T   +AMK + K  + +R ++   + ER+IL   D+
Sbjct: 1   SMFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADN 60

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
            ++  LY  F+       VM+Y PGGD+ +L  R   + F E  ARFY AE+ LA+E +H
Sbjct: 61  EWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM--EVFPEVLARFYIAELTLAIESVH 118

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCV 510
            +G ++RD+KP+N+L+  DGHI L+DF L            T    +  S+    GS   
Sbjct: 119 KMGFIHRDIKPDNILIDLDGHIKLTDFGLC-----------TGFRWTHNSKYYQKGSHIR 167

Query: 511 QPACIEPS------SVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA 564
           Q + +EPS      S C    C         ++ KT + R+           LV  P   
Sbjct: 168 QDS-MEPSDLWDDVSNC---RC--------GDRLKTLEQRATKQHQRCLAHSLVGTPN-- 213

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
                     Y+APE++  +G+    DWW+ G+ L E+L G+ PF       T   V+  
Sbjct: 214 ----------YIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVINW 263

Query: 625 Q--LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL-IRCST 681
           +  L  P     S  + DLI   L    + RLG + GA +IK HPFF  V+++  IR   
Sbjct: 264 ENTLHIPPQVKLSPEAVDLI-TKLCCSAEERLG-RNGADDIKAHPFFSEVDFSSDIRTQP 321

Query: 682 PPEVPR---PMEAELPGKFGAVD---PVGVSSSSSKKIVGTDMKSGGKYLDFEFF 730
            P VP+   PM+      F  V+   P   +S  S +   T     GK+ +  F+
Sbjct: 322 APYVPKISHPMDTS---NFDPVEEESPWNDASGDSTRTWDTLCSPNGKHPEHAFY 373

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  153 bits (388), Expect = 6e-42
 Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 3/148 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + LL++LG G  G+VY ++   T    A+K++ K      KK   A+ E  IL+ L HP 
Sbjct: 1   YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKK-RSEKSKKDQTARREIRILRRLSHPN 59

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  L   FE      LVMEYC GGDL     R  G   SE  A+  A ++L  LEYLH  
Sbjct: 60  IVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSR--GGPLSEDEAKKIALQILRGLEYLHSN 117

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           G+++RDLKPEN+L+ ++G + ++DF L+
Sbjct: 118 GIIHRDLKPENILLDENGVVKIADFGLA 145

Length = 260

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score =  153 bits (387), Expect = 7e-41
 Identities = 110/361 (30%), Positives = 172/361 (47%), Gaps = 58/361 (16%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  LK +G G  G V L +   T   +AMK++ KA +  ++++   + ER+IL   D  +
Sbjct: 3   FESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLW 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  ++  F+      L+ME+ PGGD+ TL  ++     +E   +FY AE +LA++ +H L
Sbjct: 63  VVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKK--DTLTEEETQFYIAETVLAIDSIHQL 120

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDL--SLRCAVSPTLIK--TSSLDSDPSRRGPGGSF 508
           G ++RD+KP+N+L+   GH+ LSDF L   L+ A      +    SL SD          
Sbjct: 121 GFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSD---------- 170

Query: 509 CVQPACIEPSSVCIQPACFIPRIFPQKNKKKT-RKPRSELGLPSSTLPELVAEPTAARSM 567
                             F  +    K K +T ++ R +L                  + 
Sbjct: 171 ------------------FTFQNMNSKRKAETWKRNRRQL------------------AF 194

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQ 625
           S VGT +Y+APE+    G+    DWW+ G+ ++E+L G  PF     + T   V+   + 
Sbjct: 195 STVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNWKET 254

Query: 626 LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEV 685
           L FP     S  ++DLI      E +HR+G   G  EIK +PFFEGV+W  IR   P  +
Sbjct: 255 LIFPPEVPISEKAKDLILRFCC-EWEHRIGAP-GVEEIKTNPFFEGVDWEHIR-ERPAAI 311

Query: 686 P 686
           P
Sbjct: 312 P 312

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score =  147 bits (371), Expect = 2e-38
 Identities = 120/419 (28%), Positives = 185/419 (44%), Gaps = 64/419 (15%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           S F  +K LG G  G V L+    T+  +AMK + K  +  R ++   + ER+IL   D+
Sbjct: 1   SMFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADN 60

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
            ++  LY  F+       VM+Y PGGD+ +L  R     F E  ARFY AE+  A+E +H
Sbjct: 61  EWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM--GIFPEDLARFYIAELTCAVESVH 118

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSL--------RCAVSPTLIKTSSLDSDPSRR 502
            +G ++RD+KP+N+L+  DGHI L+DF L          +   S   ++  S+D      
Sbjct: 119 KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWG 178

Query: 503 GPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR----SELGLPSSTLPELV 558
            P    C                    R+ P + +   +  R    S +G P+   PE++
Sbjct: 179 DPANCRCGD------------------RLKPLERRAARQHQRCLAHSLVGTPNYIAPEVL 220

Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
                                     G+    DWW+ G+ L+E+L G+ PF       T 
Sbjct: 221 LR-----------------------TGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQ 257

Query: 619 FNVVGQQ--LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL 676
             V+  Q  L  P     S  + DLI   L + P+ RLG K GA EIK HPFF+ ++++ 
Sbjct: 258 MKVINWQTSLHIPPQAKLSPEASDLIIK-LCRGPEDRLG-KNGADEIKAHPFFKTIDFSS 315

Query: 677 -IRCSTPPEVPRPMEAELPGKFGAVDPVGVSSSSSKKIVGTDMKSG----GKYLDFEFF 730
            +R  + P +P+         F  VDP  + S   K+    D  +G    GK+ +  F+
Sbjct: 316 DLRQQSAPYIPKITHPTDTSNFDPVDPDKLWSDDDKEGNVNDTLNGWYKNGKHPEHAFY 374

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score =  143 bits (363), Expect = 2e-38
 Identities = 61/140 (43%), Positives = 86/140 (61%), Gaps = 4/140 (2%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G V L ++ S    FA+K + K  +    +     +E+EIL+  +HPF+  LY 
Sbjct: 1   LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYR 60

Query: 399 HFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYR 457
            F+  ++  ++MEYC GG+L T LR R     F EY ARFY A V+LA EYLH  G++YR
Sbjct: 61  TFKDKKYIYMLMEYCLGGELWTILRDR---GLFDEYTARFYIACVVLAFEYLHNRGIIYR 117

Query: 458 DLKPENVLVRDDGHIMLSDF 477
           DLKPEN+L+  +G++ L DF
Sbjct: 118 DLKPENLLLDSNGYVKLVDF 137

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score =  141 bits (359), Expect = 4e-38
 Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 5/109 (4%)

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN- 620
             +R+ +F GT EYLAPE++ G+G+G AVDWW+ G+ L+E+L GK PF    +R  ++  
Sbjct: 146 EGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAE-DRKEIYEK 204

Query: 621 VVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           ++   LRFP+    S  +RDLI GLL K+P  RLG   GA EIK HPFF
Sbjct: 205 ILKDPLRFPEF--LSPEARDLISGLLQKDPTKRLG-SGGAEEIKAHPFF 250

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  137 bits (348), Expect = 5e-37
 Identities = 60/143 (41%), Positives = 80/143 (55%), Gaps = 4/143 (2%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G+VYL+    T    A+K++ K    S   L     E EIL+ L+HP +  LY 
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKED--SSSLLEELLREIEILKKLNHPNIVKLYG 58

Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRD 458
            FE +    LVMEYC GG L  L +   GK  SE        ++L  LEYLH  G+++RD
Sbjct: 59  VFEDENHLYLVMEYCEGGSLKDLLKENEGK-LSEDEILRILLQILEGLEYLHSNGIIHRD 117

Query: 459 LKPENVLV-RDDGHIMLSDFDLS 480
           LKPEN+L+  D+G + L+DF LS
Sbjct: 118 LKPENILLDSDNGKVKLADFGLS 140

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score =  136 bits (345), Expect = 7e-36
 Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 4/148 (2%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
                +K +G G  G V+L     +  Y+A+KVM    +   K+      E+ +L+ + H
Sbjct: 1   DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSH 60

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           PF+  L+      RF  ++MEY PGG+L + LR       FS     FYA+E++ ALEYL
Sbjct: 61  PFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNS---GRFSNSTGLFYASEIVCALEYL 117

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDF 477
           H   +VYRDLKPEN+L+  +GHI L+DF
Sbjct: 118 HSKEIVYRDLKPENILLDKEGHIKLTDF 145

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score =  136 bits (343), Expect = 8e-36
 Identities = 102/357 (28%), Positives = 151/357 (42%), Gaps = 90/357 (25%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL---DHPFLPT 395
           +G G  G VY    + T   +AMK +DK  +  ++  T A  ER +L L+   D PF+  
Sbjct: 2   IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 61

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           +   F T      +++   GGDLH     Q G  FSE   RFYAAE++L LE++H   VV
Sbjct: 62  MSYAFHTPDKLSFILDLMNGGDLH-YHLSQHGV-FSEAEMRFYAAEIILGLEHMHNRFVV 119

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACI 515
           YRDLKP N+L+ + GH+ +S  DL L C  S                             
Sbjct: 120 YRDLKPANILLDEHGHVRIS--DLGLACDFS----------------------------- 148

Query: 516 EPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY 575
                                KK   KP + +G      PE++ +  A  S         
Sbjct: 149 ---------------------KK---KPHASVGTHGYMAPEVLQKGVAYDS--------- 175

Query: 576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVVGQQLRFPDSP 632
                        + DW++ G  L +LL G +PF+    +         +   +  PDS 
Sbjct: 176 -------------SADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSF 222

Query: 633 ATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCSTPPEVP 686
           +     R L+ GLL ++   RLG   RGA E+K+HPFF  ++W ++  +   PP +P
Sbjct: 223 SPEL--RSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLDWQMVFLQKYPPPLIP 277

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score =  137 bits (346), Expect = 1e-35
 Identities = 100/356 (28%), Positives = 155/356 (43%), Gaps = 87/356 (24%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTL 396
           K LG G  G V L    ++  Y+AMK++ K  + ++ ++    TE  +L+   HPFL +L
Sbjct: 1   KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSL 60

Query: 397 YTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGV 454
              F+T    C VMEY  GG+L  H  R+R     FSE   RFY AE++ AL+YLH   +
Sbjct: 61  KYSFQTKDRLCFVMEYVNGGELFFHLSRERV----FSEDRTRFYGAEIVSALDYLHSGKI 116

Query: 455 VYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPAC 514
           VYRDLK EN+++  DGHI ++DF L          +KT               FC     
Sbjct: 117 VYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKT---------------FC----- 156

Query: 515 IEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHE 574
                                            G P    PE++ +    R++ + G   
Sbjct: 157 ---------------------------------GTPEYLAPEVLEDNDYGRAVDWWG--- 180

Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPAT 634
                                G+ ++E++ G+ PF    +      ++ + ++FP + + 
Sbjct: 181 --------------------LGVVMYEMMCGRLPFYNQDHEKLFELILMEDIKFPRTLSA 220

Query: 635 SYASRDLIRGLLVKEPQHRL-GVKRGATEIKQHPFFEGVNWALI--RCSTPPEVPR 687
              ++ L+ GLL+K+P  RL G    A EI +H FF GVNW  +  +   PP  P+
Sbjct: 221 D--AKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGVNWQDVYDKKLVPPFKPQ 274

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score =  136 bits (344), Expect = 1e-35
 Identities = 66/153 (43%), Positives = 91/153 (59%), Gaps = 8/153 (5%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             F  +K +  G  G+VYL     TR  FAMK ++K +L  R ++ +   ER+IL   ++
Sbjct: 1   EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAEN 60

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYA---ARFYAAEVLLALE 447
           PF+ +++  FET R  C+VMEY  GGD  TL      K+        AR Y AE +LALE
Sbjct: 61  PFVVSMFCSFETKRHLCMVMEYVEGGDCATLL-----KNIGALPVDMARMYFAETVLALE 115

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           YLH  G+V+RDLKP+N+L+   GHI L+DF LS
Sbjct: 116 YLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLS 148

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score =  133 bits (336), Expect = 6e-35
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 3/158 (1%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLP 394
           LK +  G  GSVYL++  ST  YFA+KV+ K+ + ++ ++T  + ER I+ +  + P++ 
Sbjct: 1   LKPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVA 60

Query: 395 TLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGV 454
            LY  F++  +  LVMEY  GGD  +L +   G    E  A+ Y AEV+L +E LH  G+
Sbjct: 61  KLYYSFQSKDYLYLVMEYLNGGDCASLIKTLGG--LPEDWAKQYIAEVVLGVEDLHQRGI 118

Query: 455 VYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT 492
           ++RD+KPEN+L+   GH+ L+DF LS     +   + T
Sbjct: 119 IHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFVGT 156

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score =  132 bits (334), Expect = 1e-34
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 6/151 (3%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           HF LL+ +G G  G V + +   T+  FAMK M+K     +  +     ER ILQ L+HP
Sbjct: 1   HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHP 60

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           FL  L+  F+ +    LV++   GGDL  H  ++      FSE   +F+  E++LALEYL
Sbjct: 61  FLVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQKV----KFSEEQVKFWICEIVLALEYL 116

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           H  G+++RD+KP+N+L+ + GH+ ++DF+++
Sbjct: 117 HSKGIIHRDIKPDNILLDEQGHVHITDFNIA 147

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score =  133 bits (336), Expect = 1e-34
 Identities = 65/154 (42%), Positives = 98/154 (63%), Gaps = 9/154 (5%)

Query: 333 FRLLKRLGCGDIGSVYLSELSS---TRCYFAMKVMDKASLASRKKLTR-AQTEREILQLL 388
           F LL+ LG G  G V+L            +AMKV+ KA++  + K     +TER++L+ +
Sbjct: 2   FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAV 61

Query: 389 DH-PFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLAL 446
              PFL TL+  F+TD    L+++Y  GG+L T L QR+   HF+E   R Y AE++LAL
Sbjct: 62  RRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQRE---HFTESEVRVYIAEIVLAL 118

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++LH LG++YRD+K EN+L+  +GH++L+DF LS
Sbjct: 119 DHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score =  132 bits (334), Expect = 5e-34
 Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 6/150 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD--- 389
           FR L  LG G  G V L+E   T   +A+K + K  + +R ++     E+ I +  +   
Sbjct: 1   FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSER 60

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           HPFL  L+  F+T+   C VMEY  GGDL           FSE  A FYAA V+L L+YL
Sbjct: 61  HPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYL 117

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
           H   +VYRDLK +N+L+  +G + ++DF L
Sbjct: 118 HENKIVYRDLKLDNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score =  130 bits (330), Expect = 1e-33
 Identities = 62/147 (42%), Positives = 86/147 (58%), Gaps = 7/147 (4%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPT 395
           K LG G  G V L+EL  T   +A+KV+ K  +     +    TE+ +L L   HPFL  
Sbjct: 1   KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQ 60

Query: 396 LYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG 453
           L++ F+T      VMEY  GGDL  H  R  +    F E  ARFYAAE++L L++LH  G
Sbjct: 61  LHSCFQTKDRLFFVMEYVNGGDLMFHIQRSGR----FDEPRARFYAAEIVLGLQFLHERG 116

Query: 454 VVYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++YRDLK +NVL+  +GHI ++DF + 
Sbjct: 117 IIYRDLKLDNVLLDSEGHIKIADFGMC 143

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score =  129 bits (326), Expect = 3e-33
 Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R+ +  GT EYLAPEII  +G+G AVDWW  GI ++E+L G  PF           ++  
Sbjct: 154 RTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEG 213

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNW-ALI-RCST 681
           ++RFP     S  ++DLIR LL  +   RLG +K G  +IK HP+F G++W AL+ R   
Sbjct: 214 KVRFP--SFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGIDWIALLQRKIE 271

Query: 682 PPEVPRP 688
            P +P+ 
Sbjct: 272 APFIPKV 278

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score =  130 bits (327), Expect = 4e-33
 Identities = 68/154 (44%), Positives = 99/154 (64%), Gaps = 9/154 (5%)

Query: 333 FRLLKRLGCGDIGSVYLSELSS---TRCYFAMKVMDKASLASRKKLTR-AQTEREILQLL 388
           F LLK LG G  G V+L    +   T   +AMKV+ KA+L  + K     +TER +L+ +
Sbjct: 2   FELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHV 61

Query: 389 -DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLAL 446
              PFL TL+  F+T+    L+++Y  GG++ T L QR    +FSE   RFY+ E++LAL
Sbjct: 62  RQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQRD---NFSEDEVRFYSGEIILAL 118

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           E+LH LG+VYRD+K EN+L+  +GH++L+DF LS
Sbjct: 119 EHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score =  126 bits (320), Expect = 1e-32
 Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 3/151 (1%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            + ++K++G G  G VYL    S    + +K +D  S  S K+   A  E +IL+ L+HP
Sbjct: 1   KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEID-LSNMSEKEREDALNEVKILKKLNHP 59

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTL--RQRQPGKHFSEYAARFYAAEVLLALEYL 449
            +   Y  FE     C+VMEY  GGDL     +Q++ GK F E     +  ++ LAL+YL
Sbjct: 60  NIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYL 119

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           H   +++RD+KP+N+ +  +G + L DF +S
Sbjct: 120 HSRKILHRDIKPQNIFLTSNGLVKLGDFGIS 150

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score =  127 bits (321), Expect = 3e-32
 Identities = 68/189 (35%), Positives = 102/189 (53%), Gaps = 18/189 (9%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPT 395
           K +G G  G V L++  +   ++A+KV+ K ++  +K+      ER +L + + HPFL  
Sbjct: 1   KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVG 60

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           L+  F+T      V++Y  GG+L    QR+  + F E  ARFYAAE+  AL YLH L ++
Sbjct: 61  LHYSFQTADKLYFVLDYVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSLNII 118

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACI 515
           YRDLKPEN+L+   GH++L+DF L   C       KT+S            +FC  P  +
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGL---CKEGIEHSKTTS------------TFCGTPEYL 163

Query: 516 EPSSVCIQP 524
            P  +  QP
Sbjct: 164 APEVLRKQP 172

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score =  127 bits (320), Expect = 3e-32
 Identities = 65/145 (44%), Positives = 85/145 (58%), Gaps = 6/145 (4%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTL 396
           K LG G  G V L    +T  Y+AMK++ K  + ++ ++    TE  +LQ   HPFL  L
Sbjct: 1   KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTAL 60

Query: 397 YTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGV 454
              F+T    C VMEY  GG+L  H  R+R     FSE  ARFY AE++ AL YLH   V
Sbjct: 61  KYSFQTHDRLCFVMEYANGGELFFHLSRERV----FSEDRARFYGAEIVSALGYLHSCDV 116

Query: 455 VYRDLKPENVLVRDDGHIMLSDFDL 479
           VYRDLK EN+++  DGHI ++DF L
Sbjct: 117 VYRDLKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score =  125 bits (315), Expect = 5e-32
 Identities = 107/361 (29%), Positives = 156/361 (43%), Gaps = 98/361 (27%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL---DHPFLPT 395
           +G G  G VY    + T   +AMK +DK  +  ++  T A  ER +L L+   D PF+  
Sbjct: 2   IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 61

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           +   F T    C +++   GGDLH     Q G  FSE   RFYA E++L LE++H   VV
Sbjct: 62  MTYAFHTPDKLCFILDLMNGGDLH-YHLSQHGV-FSEKEMRFYATEIILGLEHMHNRFVV 119

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACI 515
           YRDLKP N+L+ + GH+ +S  DL L C  S                             
Sbjct: 120 YRDLKPANILLDEHGHVRIS--DLGLACDFS----------------------------- 148

Query: 516 EPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY 575
                                KKK   P + +G      PE++ + TA            
Sbjct: 149 ---------------------KKK---PHASVGTHGYMAPEVLQKGTA------------ 172

Query: 576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPF-------KGSGNRATLFNVVGQQLRF 628
                     + S+ DW++ G  L +LL G +PF       K   +R TL       +  
Sbjct: 173 ----------YDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTL----TVNVEL 218

Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNW--ALIRCSTPPEV 685
           PDS +    S  L+ GLL ++   RLG + RGA E+K+H FF+G++W    ++   PP +
Sbjct: 219 PDSFSPELKS--LLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGIDWQQVYLQKYPPPLI 276

Query: 686 P 686
           P
Sbjct: 277 P 277

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score =  125 bits (317), Expect = 1e-31
 Identities = 61/150 (40%), Positives = 83/150 (55%), Gaps = 2/150 (1%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             F++L ++G G  G V+L++   T    A+K M K+ L    ++    TER+IL     
Sbjct: 1   KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKS 60

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
            +L  L   F+ D +  L MEY PGGD  TL         SE  ARFY AE+  A++ LH
Sbjct: 61  EWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNL--GVLSEDHARFYMAEMFEAVDALH 118

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            LG ++RDLKPEN L+   GHI L+DF LS
Sbjct: 119 ELGYIHRDLKPENFLIDASGHIKLTDFGLS 148

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score =  123 bits (310), Expect = 2e-31
 Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 1/106 (0%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
            VGT +Y+APE+I G+GH   VDWW+ G  L+E L G  PF G        N++  ++ +
Sbjct: 161 IVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIEW 220

Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
           P+    S  + DLI  LLV +P+ RLG K    EIK HPFF+G++W
Sbjct: 221 PEDVEVSDEAIDLISKLLVPDPEKRLGAK-SIEEIKNHPFFKGIDW 265

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score =  122 bits (307), Expect = 6e-31
 Identities = 60/144 (41%), Positives = 82/144 (56%), Gaps = 4/144 (2%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G V   ++ +T   +A K +DK  L  RK    A  E++IL+ +   F+ +L  
Sbjct: 1   LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAY 60

Query: 399 HFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVY 456
            FET    CLVM    GGDL  H     +PG  F E  A FYAA+++  LE+LH   +VY
Sbjct: 61  AFETKDDLCLVMTLMNGGDLKYHIYNVGEPG--FPEARAIFYAAQIICGLEHLHQRRIVY 118

Query: 457 RDLKPENVLVRDDGHIMLSDFDLS 480
           RDLKPENVL+ D G++ +SD  L+
Sbjct: 119 RDLKPENVLLDDHGNVRISDLGLA 142

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score =  122 bits (309), Expect = 8e-31
 Identities = 68/182 (37%), Positives = 93/182 (51%), Gaps = 18/182 (9%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL-LDHPFLPT 395
           K LG G  G V L+EL  T  +FA+K + K  +     +     ER +L L  +HPFL  
Sbjct: 1   KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTH 60

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           L+  F+T      VMEY  GGDL  +   Q    F E  ARFYAAE++  L++LH  G++
Sbjct: 61  LFCTFQTKEHLFFVMEYLNGGDL--MFHIQSSGRFDEARARFYAAEIICGLQFLHKKGII 118

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACI 515
           YRDLK +NVL+  DGHI ++DF +   C  +      +S            +FC  P  I
Sbjct: 119 YRDLKLDNVLLDKDGHIKIADFGM---CKENMNGEGKAS------------TFCGTPDYI 163

Query: 516 EP 517
            P
Sbjct: 164 AP 165

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score =  122 bits (309), Expect = 1e-30
 Identities = 62/148 (41%), Positives = 87/148 (58%), Gaps = 6/148 (4%)

Query: 336 LKRLGCGDIGSVYLSEL---SSTRCYFAMKVMDKASLASRKKLT-RAQTEREILQLLDHP 391
           LK LG G  G V+       + T   FAMKV+ KA++   +K T   + ER IL+ + HP
Sbjct: 1   LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHP 60

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
           F+  L   F+T     L++EY  GG+L    +R+    F E  A FY +E+ LALE+LH 
Sbjct: 61  FIVDLIYAFQTGGKLYLILEYLSGGELFMHLERE--GIFMEDTACFYLSEISLALEHLHQ 118

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDL 479
            G++YRDLKPEN+L+   GH+ L+DF L
Sbjct: 119 QGIIYRDLKPENILLDAQGHVKLTDFGL 146

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score =  123 bits (309), Expect = 1e-30
 Identities = 53/153 (34%), Positives = 89/153 (58%), Gaps = 2/153 (1%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +S F + + LG G  G V +++   T  Y+A+K + K  +   K++     E+ IL  L 
Sbjct: 17  LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELS 76

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           HPF+  +   F+ +     ++E+  GG+L T   R+ G+ F    A+FY AE++LA EYL
Sbjct: 77  HPFIVNMMCSFQDENRVYFLLEFVVGGELFT-HLRKAGR-FPNDVAKFYHAELVLAFEYL 134

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
           H   ++YRDLKPEN+L+ + GH+ ++DF  + +
Sbjct: 135 HSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKK 167

Length = 329

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score =  121 bits (305), Expect = 2e-30
 Identities = 66/155 (42%), Positives = 100/155 (64%), Gaps = 9/155 (5%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSS---TRCYFAMKVMDKASLASRKKLTR-AQTEREILQ- 386
           +F LLK LG G  G V+L    S   +   +AMKV+ KA++  + K T   +TER++L+ 
Sbjct: 1   NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEH 60

Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLA 445
           +   PFL TL+  F+TD    L+++Y  GG+L T L QR+    F E   + Y+ E++LA
Sbjct: 61  IRQSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQRE---RFKEQEVQIYSGEIVLA 117

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           LE+LH LG++YRD+K EN+L+  +GH++L+DF LS
Sbjct: 118 LEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score =  122 bits (307), Expect = 2e-30
 Identities = 64/145 (44%), Positives = 86/145 (59%), Gaps = 6/145 (4%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTL 396
           K LG G  G V L    +T  Y+AMK++ K  + ++ ++    TE  +LQ   HPFL  L
Sbjct: 1   KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTAL 60

Query: 397 YTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGV 454
              F+T    C VMEY  GG+L  H  R+R     F+E  ARFY AE++ ALEYLH   V
Sbjct: 61  KYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAEIVSALEYLHSRDV 116

Query: 455 VYRDLKPENVLVRDDGHIMLSDFDL 479
           VYRD+K EN+++  DGHI ++DF L
Sbjct: 117 VYRDIKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score =  121 bits (305), Expect = 3e-30
 Identities = 64/142 (45%), Positives = 83/142 (58%), Gaps = 3/142 (2%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL-LDHPFLPT 395
           K LG G  G V L+EL  T   +A+KV+ K  +     +    TE+ IL L   HPFL  
Sbjct: 1   KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTA 60

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           L+  F+T      VMEY  GGDL  + Q Q  + F E  +RFYAAEV LAL +LH  GV+
Sbjct: 61  LHCCFQTKDRLFFVMEYVNGGDL--MFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVI 118

Query: 456 YRDLKPENVLVRDDGHIMLSDF 477
           YRDLK +N+L+  +GH  L+DF
Sbjct: 119 YRDLKLDNILLDAEGHCKLADF 140

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  118 bits (299), Expect = 5e-30
 Identities = 49/107 (45%), Positives = 65/107 (60%), Gaps = 6/107 (5%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           +  +FVGT EY+APE++ G+G+G AVD W+ G+ L+ELL GK PF G      LF  +G+
Sbjct: 152 KLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPFPGDDQLLELFKKIGK 211

Query: 625 QLRFPDSPAT--SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
                  P    S  ++DLIR LLVK+P+ RL     A E  QHPFF
Sbjct: 212 PKPPFPPPEWDISPEAKDLIRKLLVKDPEKRL----TAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score =  120 bits (303), Expect = 5e-30
 Identities = 63/148 (42%), Positives = 96/148 (64%), Gaps = 6/148 (4%)

Query: 336 LKRLGCGDIGSVYLSELSSTR---CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           LK LG G  G V+L    +       +AMKV+ KA+L  R ++ R + ER+IL  ++HPF
Sbjct: 1   LKVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRV-RTKMERDILAEVNHPF 59

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  L+  F+T+    L++++  GGDL T   ++    F+E   +FY AE+ LAL++LH L
Sbjct: 60  IVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSL 117

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           G++YRDLKPEN+L+ ++GHI L+DF LS
Sbjct: 118 GIIYRDLKPENILLDEEGHIKLTDFGLS 145

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score =  119 bits (300), Expect = 1e-29
 Identities = 57/128 (44%), Positives = 78/128 (60%), Gaps = 4/128 (3%)

Query: 565 RSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
           R+ SF GT EY+APEII+G+ GHG AVDWW+ GI + ELL G +PF   G R T   V  
Sbjct: 162 RTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSR 221

Query: 624 QQLRF--PDSPATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALIRCS 680
           + L+   P        ++DL+  LL K+P+ RLG   +GA+EIK+HPFF+G++W  +   
Sbjct: 222 RILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGLDWEALALR 281

Query: 681 TPPEVPRP 688
                 RP
Sbjct: 282 KVNPPFRP 289

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score =  118 bits (297), Expect = 1e-29
 Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           +   + LG G  GSVYL+    T    A+K ++ +   S ++L   + E  IL  L HP 
Sbjct: 2   WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSG-DSEEELEALEREIRILSSLQHPN 60

Query: 393 LPTLYTHFETDRFSCL--VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           +   Y     +  + L   +EY  GG L +L ++       E   R Y  ++L  L YLH
Sbjct: 61  IVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKK--FGKLPEPVIRKYTRQILEGLAYLH 118

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
             G+V+RD+K  N+LV  DG + L+DF  + R
Sbjct: 119 SNGIVHRDIKGANILVDSDGVVKLADFGCAKR 150

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score =  117 bits (294), Expect = 4e-29
 Identities = 55/141 (39%), Positives = 77/141 (54%), Gaps = 9/141 (6%)

Query: 554 LPELVAEPTAARSMSFVGTHEYLAPEIIKG--EGHGSAVDWWTFGIFLHELLYGKTPFKG 611
           L +        R+ SF GT EY+APE+I+G   GH  AVDWW+ G+   ELL G +PF  
Sbjct: 151 LSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTV 210

Query: 612 SGNRATLFNVVGQQLR----FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHP 667
            G + +   +  + L+    FP     S  +RD I+ LL K+P+ RLG   GA EIK HP
Sbjct: 211 DGEQNSQSEISRRILKSKPPFP--KTMSAEARDFIQKLLEKDPKKRLGAN-GADEIKNHP 267

Query: 668 FFEGVNWALIRCSTPPEVPRP 688
           FF+G++W  +     P   +P
Sbjct: 268 FFQGIDWDDLAAKRIPAPFKP 288

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score =  117 bits (294), Expect = 1e-28
 Identities = 60/143 (41%), Positives = 87/143 (60%), Gaps = 9/143 (6%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPTLY 397
           +G G    V L EL  TR  +AMKV+ K  +   + +   QTE+ +     +HPFL  L+
Sbjct: 3   IGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLH 62

Query: 398 THFETDRFSCLVMEYCPGGDL--HTLRQRQ-PGKHFSEYAARFYAAEVLLALEYLHMLGV 454
           + F+T+     V+E+  GGDL  H  RQR+ P +H     ARFY+AE+ LAL +LH  G+
Sbjct: 63  SCFQTESRLFFVIEFVSGGDLMFHMQRQRKLPEEH-----ARFYSAEISLALNFLHERGI 117

Query: 455 VYRDLKPENVLVRDDGHIMLSDF 477
           +YRDLK +NVL+  +GHI L+D+
Sbjct: 118 IYRDLKLDNVLLDAEGHIKLTDY 140

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score =  116 bits (292), Expect = 2e-28
 Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 5/145 (3%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ---LLDHPFLPT 395
           +G G  G VY      TR  +AMKV+ K  + ++K++     ER IL    L + PF+  
Sbjct: 1   IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVG 60

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           L   F+TD    LV +Y  GG+L    Q++ G+ FSE  A+FY AE++LALE+LH   +V
Sbjct: 61  LKFSFQTDSDLYLVTDYMSGGELFWHLQKE-GR-FSEDRAKFYIAELVLALEHLHKYDIV 118

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLS 480
           YRDLKPEN+L+   GHI L DF LS
Sbjct: 119 YRDLKPENILLDATGHIALCDFGLS 143

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score =  115 bits (290), Expect = 4e-28
 Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 10/135 (7%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R+ +  GT EYLAPE+I+ +GHG AVDWWT G+ L+E + G  PF           ++  
Sbjct: 171 RTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAG 230

Query: 625 QLRFP---DSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALIRCS 680
           +L+FP   D  A     RDL++GLL  +   RLG +K G  ++K HP+F G NW  +   
Sbjct: 231 RLKFPNWFDGRA-----RDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGANWDKLYAR 285

Query: 681 TPPEVPRPMEAELPG 695
             P  P P+  + PG
Sbjct: 286 YYP-APIPVRVKSPG 299

Length = 329

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score =  114 bits (287), Expect = 9e-28
 Identities = 69/194 (35%), Positives = 98/194 (50%), Gaps = 20/194 (10%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP- 391
           F  L  LG G  G V L+E   T   +A+K++ K  +     +     E+ +L L   P 
Sbjct: 2   FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPP 61

Query: 392 FLPTLYTHFET-DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           FL  L++ F+T DR    VMEY  GGDL     +Q GK F E  A FYAAE+ + L +LH
Sbjct: 62  FLTQLHSCFQTMDRLY-FVMEYVNGGDL-MYHIQQVGK-FKEPHAVFYAAEIAIGLFFLH 118

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCV 510
             G++YRDLK +NV++  +GHI ++DF +   C       K +      +R     +FC 
Sbjct: 119 SKGIIYRDLKLDNVMLDAEGHIKIADFGM---C-------KENIFGGKTTR-----TFCG 163

Query: 511 QPACIEPSSVCIQP 524
            P  I P  +  QP
Sbjct: 164 TPDYIAPEIIAYQP 177

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score =  114 bits (286), Expect = 9e-28
 Identities = 65/146 (44%), Positives = 87/146 (59%), Gaps = 7/146 (4%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTL 396
           K LG G  G V L +  +T  Y+AMK++ K  + ++ ++    TE  +LQ   HPFL  L
Sbjct: 1   KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTAL 60

Query: 397 YTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LG 453
              F+T    C VMEY  GG+L  H  R+R     FSE  ARFY AE++ AL+YLH    
Sbjct: 61  KYSFQTHDRLCFVMEYANGGELFFHLSRERV----FSEDRARFYGAEIVSALDYLHSEKN 116

Query: 454 VVYRDLKPENVLVRDDGHIMLSDFDL 479
           VVYRDLK EN+++  DGHI ++DF L
Sbjct: 117 VVYRDLKLENLMLDKDGHIKITDFGL 142

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score =  112 bits (283), Expect = 1e-27
 Identities = 60/152 (39%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           FR  + LG G  G V   ++ +T   +A K ++K  +  RK    A  E++IL+ ++  F
Sbjct: 2   FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRF 61

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           + +L   +ET    CLV+    GGDL  H      PG  F E  A FYAAE+   LE LH
Sbjct: 62  VVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPG--FDEERAVFYAAEITCGLEDLH 119

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
              +VYRDLKPEN+L+ D GHI +SD  L++ 
Sbjct: 120 RERIVYRDLKPENILLDDYGHIRISDLGLAVE 151

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score =  113 bits (285), Expect = 1e-27
 Identities = 60/144 (41%), Positives = 88/144 (61%), Gaps = 3/144 (2%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPT 395
           K +G G  G V L++  S   ++A+KV+ K ++  +K+      ER +L + L HPFL  
Sbjct: 1   KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVG 60

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           L+  F+T      V++Y  GG+L    QR+  + F E  ARFYAAEV  A+ YLH L ++
Sbjct: 61  LHYSFQTAEKLYFVLDYVNGGELFFHLQRE--RCFLEPRARFYAAEVASAIGYLHSLNII 118

Query: 456 YRDLKPENVLVRDDGHIMLSDFDL 479
           YRDLKPEN+L+   GH++L+DF L
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score =  111 bits (280), Expect = 2e-27
 Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 11/117 (9%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN------RATL 618
           ++ +F GT EY+APEII  +G+  +VD+W+ GI L+ELL G+ PF              L
Sbjct: 148 KTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDIL 207

Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNW 674
                 +L FP       A++DLI+ LL + P+ RLG +K G  +IK+H +F G +W
Sbjct: 208 KGN--GKLEFP--NYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKKHKWFNGFDW 260

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score =  112 bits (281), Expect = 3e-27
 Identities = 59/144 (40%), Positives = 82/144 (56%), Gaps = 3/144 (2%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPT 395
           K LG G  G V+L+EL  T  +FA+K + K  +     +     E+ +L L  +HPFL  
Sbjct: 1   KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTH 60

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           LY  F+T      VMEY  GGDL  +   Q    F    A FYAAE++  L++LH  G+V
Sbjct: 61  LYCTFQTKENLFFVMEYLNGGDL--MFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIV 118

Query: 456 YRDLKPENVLVRDDGHIMLSDFDL 479
           YRDLK +N+L+  DGHI ++DF +
Sbjct: 119 YRDLKLDNILLDTDGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score =  111 bits (280), Expect = 7e-27
 Identities = 57/150 (38%), Positives = 90/150 (60%), Gaps = 1/150 (0%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F +LK +G G  G V + ++ +T   +AMK+++K  +  R +    + ER++L   D  +
Sbjct: 3   FEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRW 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  L+  F+ +    LVM+Y  GGDL TL  +       E  ARFY AE++LA++ +H L
Sbjct: 63  ITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKF-EDRLPEDMARFYLAEMVLAIDSVHQL 121

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
           G V+RD+KP+NVL+  +GHI L+DF   LR
Sbjct: 122 GYVHRDIKPDNVLLDKNGHIRLADFGSCLR 151

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score =  110 bits (277), Expect = 7e-27
 Identities = 61/152 (40%), Positives = 85/152 (55%), Gaps = 4/152 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           FR  + LG G  G V   ++ +T   +A K ++K  +  RK  + A  E++IL+ ++  F
Sbjct: 2   FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQF 61

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           +  L   +ET    CLV+    GGDL  H      PG  F E  A FYAAE+L  LE LH
Sbjct: 62  VVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPG--FEEERALFYAAEILCGLEDLH 119

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
               VYRDLKPEN+L+ D GHI +SD  L+++
Sbjct: 120 RENTVYRDLKPENILLDDYGHIRISDLGLAVK 151

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score =  110 bits (278), Expect = 1e-26
 Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 7/128 (5%)

Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVV 622
             + +F GT +Y+APEI+  + +G AVDWW  G+ L+E+L G++PF+G  +   LF +++
Sbjct: 151 VTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGD-DEDELFQSIL 209

Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKR-GATEIKQHPFFEGVNW-ALIRCS 680
             ++R+P     S  ++ +++  L K P+ RLG    G  +IK HPFF  ++W  L R  
Sbjct: 210 EDEVRYPRW--LSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREIDWDKLERKE 267

Query: 681 T-PPEVPR 687
             PP  P+
Sbjct: 268 IKPPFKPK 275

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score =  110 bits (277), Expect = 2e-26
 Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 18/189 (9%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPT 395
           K +G G  G V L+   +   ++A+KV+ K ++  +K+     +ER +L + + HPFL  
Sbjct: 1   KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVG 60

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           L+  F+T      V++Y  GG+L    QR+  + F E  ARFYAAE+  AL YLH L +V
Sbjct: 61  LHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLNIV 118

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACI 515
           YRDLKPEN+L+   GHI+L+DF L                  +    G   +FC  P  +
Sbjct: 119 YRDLKPENILLDSQGHIVLTDFGLC---------------KENIEHNGTTSTFCGTPEYL 163

Query: 516 EPSSVCIQP 524
            P  +  QP
Sbjct: 164 APEVLHKQP 172

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score =  113 bits (285), Expect = 4e-26
 Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 2/148 (1%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F ++K +  G  G VYL    +    +A+KV+ KA + ++  + + Q ER+ L L   PF
Sbjct: 6   FVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPF 65

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  LY   ++     LVMEY  GGD+ +L       +F E  A  Y +EV LAL+YLH  
Sbjct: 66  IVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIY--GYFDEEMAVKYISEVALALDYLHRH 123

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           G+++RDLKP+N+L+ ++GHI L+DF LS
Sbjct: 124 GIIHRDLKPDNMLISNEGHIKLTDFGLS 151

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score =  108 bits (272), Expect = 7e-26
 Identities = 59/142 (41%), Positives = 81/142 (57%), Gaps = 3/142 (2%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLY 397
           LG G  G V L+ L  +   +A+KV+ K  +     +    TE+ IL L  +HPFL  LY
Sbjct: 3   LGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLY 62

Query: 398 THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYR 457
             F+T      VME+  GGDL  +   Q  + F E  ARFYAAE+  AL +LH  G++YR
Sbjct: 63  CCFQTPDRLFFVMEFVNGGDL--MFHIQKSRRFDEARARFYAAEITSALMFLHDKGIIYR 120

Query: 458 DLKPENVLVRDDGHIMLSDFDL 479
           DLK +NVL+  +GH  L+DF +
Sbjct: 121 DLKLDNVLLDHEGHCKLADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score =  106 bits (268), Expect = 8e-26
 Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            F +L+++G G  G VY +    T    A+KV+   S   ++K+     E +IL+   HP
Sbjct: 1   LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIIN---EIQILKKCKHP 57

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ--RQPGKHFSEYAARFYAAEVLLALEYL 449
            +   Y  +       +VME+C GG   +L+   +   +  +E    +   E+L  LEYL
Sbjct: 58  NIVKYYGSYLKKDELWIVMEFCSGG---SLKDLLKSTNQTLTESQIAYVCKELLKGLEYL 114

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA 484
           H  G+++RD+K  N+L+  DG + L DF LS + +
Sbjct: 115 HSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLS 149

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score =  109 bits (274), Expect = 9e-26
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 7/163 (4%)

Query: 322 RARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTE 381
           + RD  +    + ++K +G G  G V L    STR  +AMK++ K  +  R        E
Sbjct: 34  KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEE 93

Query: 382 REILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQ--PGKHFSEYAARFYA 439
           R+I+   + P++  L+  F+ DR+  +VMEY PGGDL  L      P K      ARFY 
Sbjct: 94  RDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKW-----ARFYT 148

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
           AEV+LAL+ +H +G ++RD+KP+N+L+   GH+ L+DF   ++
Sbjct: 149 AEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMK 191

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score =  106 bits (267), Expect = 3e-25
 Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 2/141 (1%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           +G G  G V       T+  +A+K + KA + SR ++T    ER +L  ++ PF+  L  
Sbjct: 1   IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKF 60

Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRD 458
            F++     LV+ +  GG+L    QR+ G+ F    ARFY AE+L ALE LH   V+YRD
Sbjct: 61  SFQSPEKLYLVLAFINGGELFHHLQRE-GR-FDLSRARFYTAELLCALENLHKFNVIYRD 118

Query: 459 LKPENVLVRDDGHIMLSDFDL 479
           LKPEN+L+   GHI L DF L
Sbjct: 119 LKPENILLDYQGHIALCDFGL 139

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score =  108 bits (269), Expect = 3e-25
 Identities = 60/152 (39%), Positives = 87/152 (57%), Gaps = 6/152 (3%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            +R+L++LG G  G VYL+     R   A+KV+ K   +  K++ R   E +IL  L+HP
Sbjct: 1   SYRILRKLGEGSFGEVYLARD---RKLVALKVLAKKLESKSKEVERFLREIQILASLNHP 57

Query: 392 -FLPTLYTHFETDRFSCLVMEYCPGGDLHTL-RQRQPGKHFSEYAARFYAAEVLLALEYL 449
             +  LY  F+ +    LVMEY  GG L  L ++       SE  A F  A++L ALEYL
Sbjct: 58  PNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYL 117

Query: 450 HMLGVVYRDLKPENVLVRDDGH-IMLSDFDLS 480
           H  G+++RD+KPEN+L+  DG  + L DF L+
Sbjct: 118 HSKGIIHRDIKPENILLDRDGRVVKLIDFGLA 149

Length = 384

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score =  105 bits (264), Expect = 3e-25
 Identities = 55/147 (37%), Positives = 82/147 (55%), Gaps = 6/147 (4%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G V   ++ +T   +A K ++K  L  RK    A  E+ IL  +   F+ +L  
Sbjct: 1   LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAY 60

Query: 399 HFETDRFSCLVMEYCPGGDL----HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGV 454
            F+T    CLVM    GGDL    + + +  PG  F E  A FY A+++  LE+LH   +
Sbjct: 61  AFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPG--FPEPRACFYTAQIISGLEHLHQRRI 118

Query: 455 VYRDLKPENVLVRDDGHIMLSDFDLSL 481
           +YRDLKPENVL+ +DG++ +SD  L++
Sbjct: 119 IYRDLKPENVLLDNDGNVRISDLGLAV 145

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score =  106 bits (265), Expect = 6e-25
 Identities = 52/130 (40%), Positives = 76/130 (58%), Gaps = 10/130 (7%)

Query: 565 RSMSFVGTHEYLAPEIIK----GEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF 619
           +S   VGT +Y++PEI++    G+G  G   DWW+ G+ ++E+LYG+TPF       T  
Sbjct: 159 QSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYG 218

Query: 620 NVVGQQLRF---PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL 676
            ++  +  F   PD    S  ++DLIR L+   P+ RLG + G  + K HPFFEG++W  
Sbjct: 219 KIMNHKEHFQFPPDVTDVSEEAKDLIRRLICS-PETRLG-RNGLQDFKDHPFFEGIDWDN 276

Query: 677 IRCSTPPEVP 686
           IR ST P VP
Sbjct: 277 IRNSTAPYVP 286

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score =  106 bits (267), Expect = 7e-25
 Identities = 53/150 (35%), Positives = 86/150 (57%), Gaps = 3/150 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F ++K +G G  G V L    S++  +AMK++ K  +  R        ER+I+   +  +
Sbjct: 45  FDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEW 104

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  L+  F+ D++  +VMEY PGGDL  L          E  ARFY AEV+LAL+ +H +
Sbjct: 105 IVQLHYAFQDDKYLYMVMEYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLALDAIHSM 161

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
           G ++RD+KP+N+L+   GH+ L+DF   ++
Sbjct: 162 GFIHRDVKPDNMLLDKSGHLKLADFGTCMK 191

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score =  105 bits (264), Expect = 8e-25
 Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 3/142 (2%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPTLY 397
           +G G    V L  L  T   +AMKV+ K  +   + +   QTE+ +  Q  +HPFL  L+
Sbjct: 3   IGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLH 62

Query: 398 THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYR 457
           + F+T+     V+EY  GGDL    QRQ  +   E  ARFY+AE+ LAL YLH  G++YR
Sbjct: 63  SCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERGIIYR 120

Query: 458 DLKPENVLVRDDGHIMLSDFDL 479
           DLK +NVL+  +GHI L+D+ +
Sbjct: 121 DLKLDNVLLDSEGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score =  105 bits (264), Expect = 8e-25
 Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 3/149 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCY-FAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F  ++ LG G  G V L+   +      A+K  +K+ +  +K++    +ER+IL  ++HP
Sbjct: 32  FNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHP 91

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
           F   LY  F+ + +  LV+E+  GG+  T  +R   K F      FYAA+++L  EYL  
Sbjct: 92  FCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRN--KRFPNDVGCFYAAQIVLIFEYLQS 149

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           L +VYRDLKPEN+L+  DG I ++DF  +
Sbjct: 150 LNIVYRDLKPENLLLDKDGFIKMTDFGFA 178

Length = 340

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score =  105 bits (262), Expect = 9e-25
 Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 5/124 (4%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           ++ +F GT EYLAPE++ G G+  AVDWWT G+ L+E+L G  PF           ++ +
Sbjct: 149 KTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQE 208

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA--LIRCSTP 682
            LRFPD       ++DL+ GLL ++P  RLG   GA EIK HPFF  ++W   L++   P
Sbjct: 209 PLRFPDG--FDRDAKDLLIGLLSRDPTRRLGYN-GAQEIKNHPFFSQLSWKKLLMKGIQP 265

Query: 683 PEVP 686
           P  P
Sbjct: 266 PFKP 269

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score =  104 bits (260), Expect = 1e-24
 Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 5/126 (3%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R+ +  GT EYLAPE+I+ +GH  AVDWW  GI ++E+L G  PF           ++  
Sbjct: 154 RTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAG 213

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI--RCST 681
           +L FP        ++DLI+ LLV +   RLG +K GA ++K H +F+ V+W  +  R   
Sbjct: 214 KLEFPRH--LDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSVDWDDVPQRKLK 271

Query: 682 PPEVPR 687
           PP VP+
Sbjct: 272 PPIVPK 277

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score =  105 bits (263), Expect = 1e-24
 Identities = 60/160 (37%), Positives = 83/160 (51%), Gaps = 20/160 (12%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVGQQL 626
           +F GT EYLAPE+++ + +   VDWW  G  L+E+LYG  PF  S + A ++ N++ + L
Sbjct: 155 TFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFY-SRDTAEMYDNILNKPL 213

Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA--LIRCSTPPE 684
           R    P  S ++R L+ GLL K+   RLG K    EIK H FF  +NW   + +  TPP 
Sbjct: 214 RLK--PNISVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSINWDDLVNKKITPPF 271

Query: 685 VPR---PM----------EAELPGKFGA-VDPVGVSSSSS 710
            P    PM          E  +P   G   D V VS+S  
Sbjct: 272 NPNVSGPMDLKHFDPEFTEEPVPNSVGKSPDSVLVSASVK 311

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score =  105 bits (263), Expect = 1e-24
 Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 18/189 (9%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPT 395
           K +G G  G V L++       +A+KV+ K  + +RK+      ER +L + + HPFL  
Sbjct: 1   KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVG 60

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           L+  F+T      V+++  GG+L    QR+  + F E  ARFYAAE+  AL YLH + +V
Sbjct: 61  LHYSFQTTEKLYFVLDFVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSINIV 118

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACI 515
           YRDLKPEN+L+   GH++L+DF L   C        T++            +FC  P  +
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGL---CKEGIAQSDTTT------------TFCGTPEYL 163

Query: 516 EPSSVCIQP 524
            P  +  QP
Sbjct: 164 APEVIRKQP 172

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score =  103 bits (258), Expect = 2e-24
 Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 6/124 (4%)

Query: 556 ELVAEPTAARSMSFVGTHEYLAPEIIKG--EGHGSAVDWWTFGIFLHELLYGKTPFKGSG 613
           E   +    R+ SF GT EY+AP+I++G   GH  AVDWW+ G+ ++ELL G +PF   G
Sbjct: 154 EFHEDEVE-RAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDG 212

Query: 614 NRATLFNVVGQQLRF--PDSPATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFE 670
            + +   +  + L+   P     S  ++D+I+ LL+K+P+ RLG     A EIK+HPFF+
Sbjct: 213 EKNSQAEISRRILKSEPPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQ 272

Query: 671 GVNW 674
            +NW
Sbjct: 273 KINW 276

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score =  104 bits (260), Expect = 2e-24
 Identities = 57/144 (39%), Positives = 81/144 (56%), Gaps = 3/144 (2%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPT 395
           K LG G  G V L+EL     YFA+K + K  +     +     E+ +L L  ++PFL  
Sbjct: 1   KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTH 60

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           LY  F+T      VME+  GGDL  +   Q    F  Y A FYAAE++  L++LH  G++
Sbjct: 61  LYCTFQTKEHLFFVMEFLNGGDL--MFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKGII 118

Query: 456 YRDLKPENVLVRDDGHIMLSDFDL 479
           YRDLK +NV++  DGHI ++DF +
Sbjct: 119 YRDLKLDNVMLDRDGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score =  103 bits (259), Expect = 3e-24
 Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 5/122 (4%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +F GT EY+APEI+   GHG AVDWW+ G  ++++L G  PF     + T+  ++  +L 
Sbjct: 159 TFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKLN 218

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGVKRG-ATEIKQHPFFEGVNW--ALIRCSTPPE 684
            P  P  +  +RDL++ LL + P  RLG   G A E++ HPFF  VNW   L R   PP 
Sbjct: 219 LP--PYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHVNWDDLLARKVEPPF 276

Query: 685 VP 686
            P
Sbjct: 277 KP 278

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score =  103 bits (257), Expect = 3e-24
 Identities = 59/151 (39%), Positives = 85/151 (56%), Gaps = 4/151 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           FR  + LG G  G V   ++ +T   +A K ++K  +  RK  + A  E++IL+ ++  F
Sbjct: 2   FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRF 61

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           + +L   +ET    CLV+    GGDL  H     + G  F E  A FYAAE+   LE LH
Sbjct: 62  VVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAG--FEEGRAVFYAAEICCGLEDLH 119

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSL 481
              +VYRDLKPEN+L+ D GHI +SD  L++
Sbjct: 120 QERIVYRDLKPENILLDDHGHIRISDLGLAV 150

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score =  103 bits (258), Expect = 4e-24
 Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 7/126 (5%)

Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
            ++ +F GT +Y+APEI+KG+ +  +VDWW+FG+ L+E+L G++PF G        +++ 
Sbjct: 151 GKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILN 210

Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI--RCST 681
            +  FP     S  ++D +  L  ++P  RLGV     +I+QHPFF G++W  +  R   
Sbjct: 211 DRPHFPRW--ISKEAKDCLSKLFERDPTKRLGVD---GDIRQHPFFRGIDWERLEKREIP 265

Query: 682 PPEVPR 687
           PP  P+
Sbjct: 266 PPFKPK 271

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score =  103 bits (257), Expect = 5e-24
 Identities = 71/194 (36%), Positives = 99/194 (51%), Gaps = 20/194 (10%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP- 391
           F  L  LG G  G V L+E   T   +A+K++ K  +     +     E+ +L L D P 
Sbjct: 2   FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPP 61

Query: 392 FLPTLYTHFET-DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           FL  L++ F+T DR    VMEY  GGDL    Q Q GK F E  A FYAAE+ + L +LH
Sbjct: 62  FLTQLHSCFQTVDRLY-FVMEYVNGGDLMYHIQ-QVGK-FKEPQAVFYAAEISVGLFFLH 118

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCV 510
             G++YRDLK +NV++  +GHI ++DF +           K   +D   +R     +FC 
Sbjct: 119 RRGIIYRDLKLDNVMLDSEGHIKIADFGMC----------KEHMVDGVTTR-----TFCG 163

Query: 511 QPACIEPSSVCIQP 524
            P  I P  +  QP
Sbjct: 164 TPDYIAPEIIAYQP 177

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score =  103 bits (257), Expect = 6e-24
 Identities = 58/142 (40%), Positives = 82/142 (57%), Gaps = 3/142 (2%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPTLY 397
           +G G    V L  L      +AMKV+ K  +   + +   QTE+ +  Q   +PFL  L+
Sbjct: 3   IGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLH 62

Query: 398 THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYR 457
           + F+T     LV+EY  GGDL    QRQ  +   E  ARFYAAE+ +AL +LH  G++YR
Sbjct: 63  SCFQTTSRLFLVIEYVNGGDLMFHMQRQ--RKLPEEHARFYAAEICIALNFLHERGIIYR 120

Query: 458 DLKPENVLVRDDGHIMLSDFDL 479
           DLK +NVL+  DGHI L+D+ +
Sbjct: 121 DLKLDNVLLDADGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score =  102 bits (255), Expect = 9e-24
 Identities = 47/110 (42%), Positives = 63/110 (57%), Gaps = 3/110 (2%)

Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT EY+APE+I  +G+G  VDWW  GI L+E L G  PF G         V+   + +P+
Sbjct: 178 GTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPE 237

Query: 631 S-PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW-ALIR 678
              A    ++DLI  LL + P  RLG   GA E+KQH FF G++W  L+R
Sbjct: 238 GDEALPADAQDLISRLLRQNPLERLGTG-GAFEVKQHRFFLGLDWNGLLR 286

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score =  101 bits (254), Expect = 1e-23
 Identities = 50/130 (38%), Positives = 83/130 (63%), Gaps = 15/130 (11%)

Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
           A++ +F GT +Y+APEI+ G+ + ++VDWW+FG+ L+E+L G++PF G  +   LF    
Sbjct: 151 AKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGH-DEEELF---- 205

Query: 624 QQLRFPDSPA----TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI-- 677
           Q +R  D+P      +  ++D++  L V+EP+ RLGVK    +I+QHPFF  ++W+ +  
Sbjct: 206 QSIRM-DNPCYPRWLTREAKDILVKLFVREPERRLGVK---GDIRQHPFFREIDWSALEE 261

Query: 678 RCSTPPEVPR 687
           R   PP  P+
Sbjct: 262 REIEPPFKPK 271

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score =  102 bits (257), Expect = 1e-23
 Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 10/130 (7%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGH----GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN 620
           R  + VGT +Y++PE++K +G     G   DWW+ G+FL+E+L G TPF       T   
Sbjct: 199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSK 258

Query: 621 VVGQQ--LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF--EGVNWAL 676
           ++  +  L FPD    S  ++DLI   L      RLG + G  EIK HPFF  +   +  
Sbjct: 259 IMDHKNSLTFPDDIEISKQAKDLICAFLTDRE-VRLG-RNGVDEIKSHPFFKNDQWTFDN 316

Query: 677 IRCSTPPEVP 686
           IR +  P VP
Sbjct: 317 IRETVAPVVP 326

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score =  100 bits (250), Expect = 2e-23
 Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           FVGT +YLAPE I G G     DWW+ G  + E L+G  PF      A   N++ +++ +
Sbjct: 153 FVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINW 212

Query: 629 PD--SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
           P+      S  + DLI  LL  +P  RLG   G  EIK HPFF+ +NW
Sbjct: 213 PEEVKEFCSPEAVDLINRLLCMDPAKRLGAN-GYQEIKSHPFFKSINW 259

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score =  101 bits (254), Expect = 2e-23
 Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 4/122 (3%)

Query: 568 SFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           +F GT EYLAPE++  E G+   VD+W+ G+ + E+  G +PF     +    N+   ++
Sbjct: 155 TFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKV 214

Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI--RCSTPPE 684
           RFP +   S   R  ++GLL + PQHRLG  R A E+K+HPFF  ++W L+  +  TPP 
Sbjct: 215 RFPKN-VLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADIDWDLLSKKQITPPF 273

Query: 685 VP 686
            P
Sbjct: 274 KP 275

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score =  101 bits (253), Expect = 2e-23
 Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 1/150 (0%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F ++K +G G  G V + ++  T   +AMK+++K  +  R +    + ER +L   D  +
Sbjct: 3   FEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQW 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           + TL+  F+ + +  LVM+Y  GGDL TL  +   +   E  ARFY AE++LA+  +H L
Sbjct: 63  ITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDR-LPEDMARFYIAEMVLAIHSIHQL 121

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
             V+RD+KP+NVL+  +GHI L+DF   L+
Sbjct: 122 HYVHRDIKPDNVLLDMNGHIRLADFGSCLK 151

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score =  100 bits (251), Expect = 4e-23
 Identities = 42/124 (33%), Positives = 72/124 (58%), Gaps = 10/124 (8%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R+ +F GT E+LAPE++    +  AVDWW  G+ ++E+L G++PF G        ++V  
Sbjct: 157 RTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVND 216

Query: 625 QLRFPDSPATSYASRD---LIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNW-ALIRC 679
           ++R+P      + SR+   ++R LL + P+ RLG  ++ A ++K+ PFF  +NW  L+  
Sbjct: 217 EVRYP-----RFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDINWDDLLAR 271

Query: 680 STPP 683
              P
Sbjct: 272 KIKP 275

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score =  101 bits (253), Expect = 4e-23
 Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 3/150 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + ++K +G G  G V L    S++  +AMK++ K  +  R        ER+I+   + P+
Sbjct: 45  YDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW 104

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  L+  F+ D++  +VMEY PGGDL  L          E  A+FY AEV+LAL+ +H +
Sbjct: 105 VVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIHSM 161

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
           G+++RD+KP+N+L+   GH+ L+DF   ++
Sbjct: 162 GLIHRDVKPDNMLLDKHGHLKLADFGTCMK 191

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 99.3 bits (247), Expect = 6e-23
 Identities = 59/152 (38%), Positives = 83/152 (54%), Gaps = 4/152 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           FR  + LG G  G V   ++ +T   +A K ++K  +  RK    A  E+ IL+ ++  F
Sbjct: 2   FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRF 61

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           + +L   +ET    CLV+    GGDL  H      PG  F E  A FYAAE+   LE L 
Sbjct: 62  VVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPG--FDEQRAIFYAAELCCGLEDLQ 119

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
              +VYRDLKPEN+L+ D GHI +SD  L+++
Sbjct: 120 RERIVYRDLKPENILLDDRGHIRISDLGLAVQ 151

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score =  100 bits (249), Expect = 7e-23
 Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 1/150 (0%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F +LK +G G  G V + +L +    FAMK+++K  +  R +    + ER++L   D+ +
Sbjct: 3   FEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQW 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           + TL+  F+ +    LVM+Y  GGDL TL  +   +   E  ARFY AE+++A++ +H L
Sbjct: 63  ITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDR-LPEDMARFYLAEMVIAIDSVHQL 121

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
             V+RD+KP+N+L+  +GHI L+DF   L+
Sbjct: 122 HYVHRDIKPDNILMDMNGHIRLADFGSCLK 151

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score =  100 bits (249), Expect = 7e-23
 Identities = 67/194 (34%), Positives = 97/194 (50%), Gaps = 20/194 (10%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP- 391
           F  L  LG G  G V L+E   T   +A+K++ K  +     +     E+ +L L   P 
Sbjct: 2   FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPP 61

Query: 392 FLPTLYTHFET-DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           FL  L++ F+T DR    VMEY  GGDL  + Q Q    F E  A FYAAE+ + L +LH
Sbjct: 62  FLTQLHSCFQTMDRLY-FVMEYVNGGDL--MYQIQQVGRFKEPHAVFYAAEIAIGLFFLH 118

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCV 510
             G++YRDLK +NV++  +GHI ++DF +           K +  D   ++     +FC 
Sbjct: 119 SKGIIYRDLKLDNVMLDSEGHIKIADFGMC----------KENMWDGVTTK-----TFCG 163

Query: 511 QPACIEPSSVCIQP 524
            P  I P  +  QP
Sbjct: 164 TPDYIAPEIIAYQP 177

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 95.8 bits (239), Expect = 5e-22
 Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 10/109 (9%)

Query: 567 MSFVGTHEYLAPEIIK-GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR---ATLFNVV 622
            +FVGT  Y+APE++  G G+G  VD W+ G+ L+ELL GK PF G         +  ++
Sbjct: 156 TTFVGTPWYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRRIL 215

Query: 623 GQQLRFPDSPATSYAS--RDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           G  L F +   +S +   +DLI+  L K+P  R      A EI QHP+F
Sbjct: 216 GPPLEFDEPKWSSGSEEAKDLIKKCLNKDPSKRP----TAEEILQHPWF 260

Length = 260

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 96.0 bits (239), Expect = 6e-22
 Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 16/149 (10%)

Query: 545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY 604
           S+LGL        V      +     GT  Y+APE+++GE +  +VDW+  G  L+E++ 
Sbjct: 137 SDLGLA-------VELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIA 189

Query: 605 GKTPFKGSG----NRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK-RG 659
           G++PF+               +   + +PD    S  ++DL   LL K+P+ RLG +   
Sbjct: 190 GRSPFRQRKEKVEKEELKRRTLEMAVEYPDK--FSPEAKDLCEALLQKDPEKRLGCRGGS 247

Query: 660 ATEIKQHPFFEGVNWALIRCS--TPPEVP 686
           A E+++HP F+ +NW  +      PP +P
Sbjct: 248 ADEVREHPLFKDLNWRRLEAGMLEPPFIP 276

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 95.7 bits (239), Expect = 6e-22
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 7/152 (4%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS-LASRKKLTRAQTEREILQLLD 389
           S    +K LG G  G VY      T   +A+K +        RK+L R   E + L+  +
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLR---ELKTLRSCE 57

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
            P++   Y  F  +    +V+EY  GG L  L ++       E    + A ++L  L+YL
Sbjct: 58  SPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYL 115

Query: 450 H-MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           H    +++RD+KP N+L+   G + ++DF +S
Sbjct: 116 HTKRHIIHRDIKPSNLLINSKGEVKIADFGIS 147

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 96.8 bits (241), Expect = 9e-22
 Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 15/133 (11%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT--------LF 619
           +F GT  Y+APEI++GE +G +VDWW  G+ + E++ G++PF   G            LF
Sbjct: 155 TFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLF 214

Query: 620 NVV-GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKR--GATEIKQHPFFEGVNWAL 676
            V+  +Q+R P S +   +S  +++G L K+P+ RLG     G  +IK HPFF  ++W L
Sbjct: 215 QVILEKQIRIPRSLSVKASS--VLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRNIDWDL 272

Query: 677 I--RCSTPPEVPR 687
           +  +   PP  P 
Sbjct: 273 LEQKQVLPPYKPN 285

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 10/126 (7%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-- 625
           S VG+ +Y+APE+++G+G+   VD+W+ G  L+E L G  PF GS    T  N+   +  
Sbjct: 157 SVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKET 216

Query: 626 LRFP--DSPATSYASR--DLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCST 681
           L+ P  D P  + +    DLI  L+  +P  R G      +IK HPFF+ V+W  +R   
Sbjct: 217 LQRPVYDDPRFNLSDEAWDLITKLI-NDPSRRFG---SLEDIKNHPFFKEVDWNELRELK 272

Query: 682 PPEVPR 687
           PP VP 
Sbjct: 273 PPFVPE 278

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 95.7 bits (238), Expect = 1e-21
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 12/149 (8%)

Query: 545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY 604
           S+LGL +  +PE   E    R    VGT  Y+APE++K E +  + DWW  G  ++E++ 
Sbjct: 144 SDLGL-AVEIPE--GETIRGR----VGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIE 196

Query: 605 GKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRDLIRGLLVKEPQHRLGVKR-GAT 661
           GK+PF+    +     V  +     +  S   S A+R + R LL K+P  RLG +  GA 
Sbjct: 197 GKSPFRQRKEKVKREEVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAE 256

Query: 662 EIKQHPFFEGVNWALIRCS--TPPEVPRP 688
           E+K HPFF   N+  +      PP  P P
Sbjct: 257 EVKAHPFFRTANFKRLEAGMLEPPFCPDP 285

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 96.2 bits (239), Expect = 1e-21
 Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 14/178 (7%)

Query: 560 EPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF 619
           EP    S +F GT EYLAPE+++ E +   VDWW  G  L+E+LYG  PF          
Sbjct: 148 EPEETTS-TFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYD 206

Query: 620 NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI-- 677
           N++ + L+ P     + A+ DL+ GLL K+ + RLG K    EIK H FF  +NW  +  
Sbjct: 207 NILHKPLQLP--GGKTVAACDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSPINWDDLYH 264

Query: 678 RCSTPPEVPRPMEAELPGKFGAVDP------VGVSSSSSKKIVGTDMKSGGKYLDFEF 729
           +  TPP  P       P      DP      V  S   +  +  +   +   +L F +
Sbjct: 265 KRITPPYNP---NVAGPADLRHFDPEFTQEAVSSSVGQTPDLTASSSSASSAFLGFSY 319

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 95.6 bits (238), Expect = 2e-21
 Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 5/114 (4%)

Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
            A   +F GT EYLAPE+++   +G AVDWW  G+ ++E++ G+ PF  + +   LF ++
Sbjct: 149 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY-NQDHEKLFELI 207

Query: 623 -GQQLRFPDSPATSYASRDLIRGLLVKEPQHRL-GVKRGATEIKQHPFFEGVNW 674
             +++RFP +   S  ++ L+ GLL K+P+ RL G    A EI +H FF  +NW
Sbjct: 208 LMEEIRFPRT--LSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASINW 259

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 95.6 bits (238), Expect = 2e-21
 Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 5/125 (4%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           ++ SF GT EY+APE++   GH  + DWW+FG+ + E+L G  PF+G   + T+  ++  
Sbjct: 154 KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKA 213

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCST 681
           +L  P     S  ++ L+R L  + P +RLG    G  EIK+HPFF  ++W  +  R   
Sbjct: 214 KLGMPQF--LSPEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTIDWNKLYRREIK 271

Query: 682 PPEVP 686
           PP  P
Sbjct: 272 PPFKP 276

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 95.6 bits (238), Expect = 2e-21
 Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 5/124 (4%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +F GT +Y+APEII  + +G +VDWW FG+ L+E+L G+ PF G        +++   + 
Sbjct: 160 TFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVS 219

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCSTPPE 684
           +P S   S  +  + +GLL K P  RLG    G  +I++H FF  ++W  +  R   PP 
Sbjct: 220 YPKS--LSKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRRIDWEKLERREIQPPF 277

Query: 685 VPRP 688
            P+ 
Sbjct: 278 KPKV 281

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 93.9 bits (233), Expect = 7e-21
 Identities = 46/126 (36%), Positives = 73/126 (57%), Gaps = 9/126 (7%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R+ +F GT +Y+APEI++G  +  +VDWW+FG+ L+E+L G++PF G  +   LF  +  
Sbjct: 152 RASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGD-DEDELFESIRV 210

Query: 625 QLRFPDSPA-TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI--RCST 681
               P  P   +  S+D++  L  ++P  RLGV      I+ HPFF+ +NW  +  R   
Sbjct: 211 DT--PHYPRWITKESKDILEKLFERDPTRRLGV---VGNIRGHPFFKTINWTALEKRELD 265

Query: 682 PPEVPR 687
           PP  P+
Sbjct: 266 PPFKPK 271

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 93.6 bits (232), Expect = 9e-21
 Identities = 50/141 (35%), Positives = 80/141 (56%), Gaps = 16/141 (11%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT--------LFN 620
           F GT  Y+APEI++GE +G +VDWW  G+ + E++ G++PF   G+           LF 
Sbjct: 156 FCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQ 215

Query: 621 VV-GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV--KRGATEIKQHPFFEGVNWALI 677
           V+  +Q+R P S +   AS  +++  L K+P+ RLG   + G  +I+ HPFF  V+W L+
Sbjct: 216 VILEKQIRIPRSLSVKAAS--VLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDLM 273

Query: 678 RCSTPPEVPRPMEAELPGKFG 698
                 +V  P +  + G+FG
Sbjct: 274 E---QKQVVPPFKPNISGEFG 291

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 92.3 bits (230), Expect = 9e-21
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           +++L   +G G  G VY      T  + A+K +    +   + L     E ++L+ L HP
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKI-KEEALKSIMQEIDLLKNLKHP 59

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
            +       ET     +++EY   G L  + ++     F E     Y  +VL  L YLH 
Sbjct: 60  NIVKYIGSIETSDSLYIILEYAENGSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYLHE 117

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
            GV++RD+K  N+L   DG + L+DF ++ +
Sbjct: 118 QGVIHRDIKAANILTTKDGVVKLADFGVATK 148

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 91.6 bits (228), Expect = 1e-20
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           S  GT  Y+APE++  +G+  AVDWW+ G+  +E L GK P++G            Q+  
Sbjct: 158 STSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETA 217

Query: 628 FPDSPAT-SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
               PAT S  + D I  LL ++PQ RLG      ++K HP+F
Sbjct: 218 DVLYPATWSTEAIDAINKLLERDPQKRLGDN--LKDLKNHPYF 258

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 92.8 bits (230), Expect = 2e-20
 Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 5/123 (4%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +F GT EYLAPE+++   +G AVDWW  G+ ++E++ G+ PF    +      ++ +++R
Sbjct: 154 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIR 213

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRL-GVKRGATEIKQHPFFEGVNW--ALIRCSTPPE 684
           FP + +    ++ L+ GLL K+P+ RL G    A E+ +H FF  +NW   + +   PP 
Sbjct: 214 FPRTLSPE--AKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPF 271

Query: 685 VPR 687
            P+
Sbjct: 272 KPQ 274

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 91.6 bits (227), Expect = 4e-20
 Identities = 51/130 (39%), Positives = 72/130 (55%), Gaps = 7/130 (5%)

Query: 560 EPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF 619
           E     S +F GT EYLAPE++  + +   VDWW  G  L+E+LYG  PF  S N A ++
Sbjct: 148 EHNGTTS-TFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFY-SRNTAEMY 205

Query: 620 -NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW--AL 676
            N++ + L+    P  + ++R L+ GLL K+   RLG K    EIK H FF  +NW   +
Sbjct: 206 DNILNKPLQL--KPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSPINWDDLI 263

Query: 677 IRCSTPPEVP 686
            +  TPP  P
Sbjct: 264 NKKITPPFNP 273

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 90.8 bits (225), Expect = 4e-20
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 4/146 (2%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G V   ++ +T   +A K +DK  L  +     A  E+EIL+ ++ PF+  L  
Sbjct: 1   LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAY 60

Query: 399 HFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVY 456
            FE+    CLVM    GGDL  H     + G          Y+A++   + +LH + +VY
Sbjct: 61  AFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVI--HYSAQITCGILHLHSMDIVY 118

Query: 457 RDLKPENVLVRDDGHIMLSDFDLSLR 482
           RD+KPENVL+ D G+  LSD  L++ 
Sbjct: 119 RDMKPENVLLDDQGNCRLSDLGLAVE 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 91.6 bits (227), Expect = 5e-20
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 14/174 (8%)

Query: 566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
           + +F GT EYLAPE+I+ + + + VDWW  G  L+E+LYG  PF          N++ + 
Sbjct: 153 TTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKP 212

Query: 626 LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA-LIRCSTPPE 684
           L     P  S  +  ++  LL K+ Q RLG K    EI++HPFFE ++W  L +   PP 
Sbjct: 213 LVL--RPGASLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESLSWTDLEQKKIPP- 269

Query: 685 VPRPMEAELPGKFGAVDPV--------GVSSSSSKKIVGTD-MKSGGKYLDFEF 729
            P     E P      D V         V  SS   IV    +++   ++ F +
Sbjct: 270 -PFNPNVEGPDDISNFDAVFTEETVPYSVCFSSDYSIVNASVLEADDAFVGFSY 322

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 91.2 bits (226), Expect = 5e-20
 Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 13/131 (9%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFK------GSGNRATLFNV 621
           +F GT  Y+APEI++GE +G +VDWW  G+ + E++ G++PF              LF V
Sbjct: 155 TFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQV 214

Query: 622 VGQQ-LRFPDSPATSYASRDLIRGLLVKEPQHRLG--VKRGATEIKQHPFFEGVNWALI- 677
           + ++ +R P   +   +   +++G L K+P+ RLG   + G ++IK H FF  ++W L+ 
Sbjct: 215 ILEKPIRIPRFLSVKASH--VLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSIDWDLLE 272

Query: 678 -RCSTPPEVPR 687
            +  TPP  P+
Sbjct: 273 KKQVTPPFKPQ 283

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 90.7 bits (225), Expect = 8e-20
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 8/125 (6%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQL 626
           +F GT +Y+APEI++   +G +VDWW  G+ L+E+L G  PF+   N   LF  ++  ++
Sbjct: 155 TFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAE-NEDDLFEAILNDEV 213

Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLG--VKRGATEIKQHPFFEGVNWALI--RCSTP 682
            +P     S  + D+++  + K P  RLG     G   I +HPFF+ ++W  +  R   P
Sbjct: 214 VYPT--WLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKELDWEKLNRRQIEP 271

Query: 683 PEVPR 687
           P  PR
Sbjct: 272 PFRPR 276

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 90.9 bits (225), Expect = 9e-20
 Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 16/147 (10%)

Query: 556 ELVAEPTAARSMSFVGTHEYLAPEIIK----GEG-HGSAVDWWTFGIFLHELLYGKTPFK 610
           +L+ + T   S++ VGT +Y++PEI++    G+G +G   DWW+ G+ ++E+LYG+TPF 
Sbjct: 151 KLMEDGTVQSSVA-VGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFY 209

Query: 611 GSGNRATLFNVVGQQLRFPDSPA----TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH 666
                 T   ++  + RF   PA     S  ++DLIR L+    +HRLG + G  + KQH
Sbjct: 210 AESLVETYGKIMNHKERF-QFPAQVTDVSEDAKDLIRRLICSR-EHRLG-QNGIEDFKQH 266

Query: 667 PFFEGVNWALIR-CSTP--PEVPRPME 690
           PFF G++W  IR C  P  PEV  P +
Sbjct: 267 PFFTGIDWDNIRNCEAPYIPEVSSPTD 293

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 89.3 bits (222), Expect = 9e-20
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 9/159 (5%)

Query: 335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLP 394
              ++G G  G VY +    T    A+K + +      K +     E ++L+LL HP L 
Sbjct: 4   RGNKIGGGTFGKVYTAVNLDTGELMAVKEI-RIQDNDPKTIKEIADEMKVLELLKHPNLV 62

Query: 395 TLY---THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
             Y    H E      + MEYC GG L  L +   G+   E+  R Y  ++L  L YLH 
Sbjct: 63  KYYGVEVHREK---VYIFMEYCSGGTLEELLEH--GRILDEHVIRVYTLQLLEGLAYLHS 117

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI 490
            G+V+RD+KP N+ +  +G I L DF  +++   + T +
Sbjct: 118 HGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTM 156

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 89.7 bits (222), Expect = 2e-19
 Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 5/128 (3%)

Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
            A   +F GT EYLAPE+++   +G AVDWW  G+ ++E++ G+ PF    +      ++
Sbjct: 150 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELIL 209

Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRL-GVKRGATEIKQHPFFEGVNWALI--RC 679
            +++RFP +   S  ++ L+ GLL K+P+ RL G    A EI QH FF G+ W  +  + 
Sbjct: 210 MEEIRFPRT--LSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGIVWQDVYEKK 267

Query: 680 STPPEVPR 687
             PP  P+
Sbjct: 268 LVPPFKPQ 275

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 88.9 bits (220), Expect = 3e-19
 Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 5/123 (4%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +F GT +Y+APEII  + +G +VDWW FG+ L+E+L G+ PF+G        +++   + 
Sbjct: 160 TFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVA 219

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCSTPPE 684
           +P S   S  +  + +GL+ K P  RLG    G  +IK+H FF  ++W  +  +   PP 
Sbjct: 220 YPKS--MSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEVQPPY 277

Query: 685 VPR 687
            P+
Sbjct: 278 KPK 280

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 86.3 bits (214), Expect = 8e-19
 Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 3/150 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F++LK+LG G  GSVY  +  S   ++A+K +D  S++ +++   A  E  IL  ++HP 
Sbjct: 2   FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKERED-AVNEIRILASVNHPN 60

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTL--RQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           + +    F      C+VMEY P GDL     ++++  K   E        ++L  L+ LH
Sbjct: 61  IISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH 120

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +++RDLK  N+L+  +  + + D  +S
Sbjct: 121 EQKILHRDLKSANILLVANDLVKIGDLGIS 150

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 87.4 bits (216), Expect = 1e-18
 Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 5/123 (4%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +F GT +Y+APEII  + +G +VDWW +G+ L+E+L G+ PF G        +++   + 
Sbjct: 160 TFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVS 219

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCSTPPE 684
           +P S +    S  + +GL+ K P  RLG    G  +I++H FF  ++W  +  R   PP 
Sbjct: 220 YPKSLSKEAVS--ICKGLMTKHPSKRLGCGPEGERDIREHAFFRRIDWDKLENREIQPPF 277

Query: 685 VPR 687
            P+
Sbjct: 278 KPK 280

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 85.2 bits (211), Expect = 2e-18
 Identities = 50/145 (34%), Positives = 70/145 (48%), Gaps = 6/145 (4%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQLLDHPFLPTL 396
           LG G  GSVY         +FA+K +  A      +    Q E+EI  L  L HP +   
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQY 67

Query: 397 Y-THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
             T  E D    + +E  PGG L  L ++     F E   R Y  ++LL LEYLH    V
Sbjct: 68  LGTEREEDNL-YIFLELVPGGSLAKLLKKY--GSFPEPVIRLYTRQILLGLEYLHDRNTV 124

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLS 480
           +RD+K  N+LV  +G + L+DF ++
Sbjct: 125 HRDIKGANILVDTNGVVKLADFGMA 149

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 85.4 bits (211), Expect = 3e-18
 Identities = 38/124 (30%), Positives = 70/124 (56%), Gaps = 5/124 (4%)

Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
           VGT  Y+APE++  + +  + D+W  G  ++E++ G++PF+G   +     V  + L   
Sbjct: 162 VGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETE 221

Query: 630 DSPATSYA--SRDLIRGLLVKEPQHRLGVKR-GATEIKQHPFFEGVNWALIRCST--PPE 684
           +  +  ++  ++ + + LL K+P+ RLG +  GA E+K+HPFF  +N+  +      PP 
Sbjct: 222 EVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNMNFKRLEAGMLDPPF 281

Query: 685 VPRP 688
           VP P
Sbjct: 282 VPDP 285

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 88.8 bits (220), Expect = 3e-18
 Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 5/120 (4%)

Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
           +GT +YLAPE++ G+ HG AVDWW  G+ L E L G  PF     +    N++ + + +P
Sbjct: 541 LGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQVFQNILNRDIPWP 600

Query: 630 D-SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRP 688
           +     S  +++ I  LL  +P  R G+K    E+KQHP F GV+W  ++  T P +P+P
Sbjct: 601 EGEEKLSVNAQNAIEILLTMDPTKRAGLK----ELKQHPLFHGVDWENLQNQTMPFIPQP 656

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 85.7 bits (212), Expect = 3e-18
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 15/149 (10%)

Query: 545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY 604
           S+LGL      EL    +  +   + GT  ++APE+++GE +  +VD++  G+ L+E++ 
Sbjct: 139 SDLGLAV----ELKDGQSKTKG--YAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIA 192

Query: 605 GKTPFKGSG----NRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGA 660
            + PF+  G    N+     ++   + +PD    S AS+     LL K+P+ RLG + G 
Sbjct: 193 ARGPFRARGEKVENKELKQRILNDSVTYPDK--FSPASKSFCEALLAKDPEKRLGFRDGN 250

Query: 661 -TEIKQHPFFEGVNWALIRCS--TPPEVP 686
              ++ HP F  +NW  +      PP VP
Sbjct: 251 CDGLRTHPLFRDLNWRQLEAGMLPPPFVP 279

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 85.8 bits (212), Expect = 6e-18
 Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 10/130 (7%)

Query: 565 RSMSFVGTHEYLAPEIIKGEG----HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN 620
           R  + VGT +Y++PE++K +G    +G   DWW+ G+FL+E+L G TPF       T   
Sbjct: 199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSK 258

Query: 621 VVGQQ--LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL-- 676
           ++  +  L FPD    S  +++LI   L  + + RLG + G  EIK+H FF+   WA   
Sbjct: 259 IMNHKNSLTFPDDNDISKEAKNLICAFLT-DREVRLG-RNGVEEIKRHLFFKNDQWAWET 316

Query: 677 IRCSTPPEVP 686
           +R +  P VP
Sbjct: 317 LRDTVAPVVP 326

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 85.4 bits (211), Expect = 7e-18
 Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)

Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+ +  GT EY+APEI+   GHG A DWWT GIF++E+L G  PF  +      
Sbjct: 178 AKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIY 237

Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNW 674
             ++   + FP     +   + L++ LL  +   R G +K+GA  +K+HP+F  ++W
Sbjct: 238 QKILEGIIYFPKFLDNN--CKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNIDW 292

Length = 340

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 84.1 bits (209), Expect = 8e-18
 Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 10/152 (6%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE---ILQLLD 389
           ++++K+LG G  GSVYL+    T    A+K M K    S ++       RE   + +L +
Sbjct: 1   YKVIKQLGDGTFGSVYLARNKETGELVAIKKM-KKKFYSWEECMN---LREVKSLRKLNE 56

Query: 390 HPFLPTLYTHF-ETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
           HP +  L   F E D     V EY  G +L+ L + + GK FSE   R    ++L  L +
Sbjct: 57  HPNIVKLKEVFRENDEL-YFVFEYMEG-NLYQLMKDRKGKPFSESVIRSIIYQILQGLAH 114

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +H  G  +RDLKPEN+LV     + ++DF L+
Sbjct: 115 IHKHGFFHRDLKPENLLVSGPEVVKIADFGLA 146

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 85.1 bits (210), Expect = 1e-17
 Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 10/125 (8%)

Query: 570 VGTHEYLAPEIIKGEG----HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
           VGT +Y++PE++K +G    +G   DWW+ G+FL E+L G TPF       T   ++  +
Sbjct: 204 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHK 263

Query: 626 --LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG--VNWALIRCST 681
             L FP+    S  +++LI   L  + + RLG + G  EIKQHPFF+    NW  IR + 
Sbjct: 264 NSLNFPEDVEISKHAKNLICAFLT-DREVRLG-RNGVEEIKQHPFFKNDQWNWDNIRETA 321

Query: 682 PPEVP 686
            P VP
Sbjct: 322 APVVP 326

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 82.6 bits (204), Expect = 2e-17
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 3/146 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F +L ++G G  G V+     + +  +AMK +D +   +R++   A  E  +L  LD  +
Sbjct: 2   FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSK-MNRREREEAIDEARVLAKLDSSY 60

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAA-RFYAAEVLLALEYLHM 451
           +   Y  F       +VMEY   GDLH L + Q G+   E    RF+  ++LL L +LH 
Sbjct: 61  IIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFF-IQILLGLAHLHS 119

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDF 477
             +++RD+K  N+ +    ++ + D 
Sbjct: 120 KKILHRDIKSLNLFLDAYDNVKIGDL 145

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 83.5 bits (206), Expect = 3e-17
 Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 12/126 (9%)

Query: 570 VGTHEYLAPEIIK----GEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           VGT +Y++PEI++    G G +G   DWW+ G+ ++E+LYG+TPF       T   ++  
Sbjct: 164 VGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNH 223

Query: 625 QLRFPDSPA----TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCS 680
           + RF   P+     S  ++DLI+ L+    + RLG + G  + K+H FFEG++W  IR  
Sbjct: 224 EERF-QFPSHITDVSEEAKDLIQRLICSR-ERRLG-QNGIEDFKKHAFFEGIDWENIRNL 280

Query: 681 TPPEVP 686
             P +P
Sbjct: 281 EAPYIP 286

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 82.2 bits (204), Expect = 3e-17
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 35/164 (21%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE--------- 383
           +  + ++G G  G VY +    T    A+K +            R + E+E         
Sbjct: 1   YEKIAQIGEGTYGQVYKARNKKTGELVALKKI------------RMENEKEGFPITAIRE 48

Query: 384 --ILQLLDHPFLPTLY----THFETDRFSCLVMEYCPGGDLHTLRQ--RQPGKHFSEYAA 435
             +LQ L HP +  L     +  +   +  +V EY      H L      P   F+E   
Sbjct: 49  IKLLQKLRHPNIVRLKEIVTSKGKGSIY--MVFEYMD----HDLTGLLDSPEVKFTESQI 102

Query: 436 RFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
           + Y  ++L  L+YLH  G+++RD+K  N+L+ +DG + L+DF L
Sbjct: 103 KCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGL 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 81.8 bits (203), Expect = 3e-17
 Identities = 47/154 (30%), Positives = 67/154 (43%), Gaps = 11/154 (7%)

Query: 333 FRLLKRLGCGDIGSVYLSEL----SSTRCYFAMKVM-DKASLASRKKLTRAQTEREILQL 387
             L K+LG G  G VY   L      T    A+K + + AS   R++      E  I++ 
Sbjct: 1   LELGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLE---EASIMKK 57

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLAL 446
           L HP +  L           +V EY PGGDL   LR+       +       A ++   +
Sbjct: 58  LSHPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGE--KLTLKDLLQMALQIAKGM 115

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           EYL     V+RDL   N LV ++  + +SDF LS
Sbjct: 116 EYLESKNFVHRDLAARNCLVTENLVVKISDFGLS 149

Length = 258

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             + L++R+G G  G VY +   +T    A+KV+    L         Q E  +L+   H
Sbjct: 3   EDYELIQRIGSGTYGDVYKARDIATGELVAIKVI---KLEPGDDFEIIQQEISMLKECRH 59

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P +   +  +       +VMEYC GG L  + Q   G   SE    +   E L  L YLH
Sbjct: 60  PNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRG-PLSELQIAYVCRETLKGLAYLH 118

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             G ++RD+K  N+L+ +DG + L+DF +S
Sbjct: 119 ETGKIHRDIKGANILLTEDGDVKLADFGVS 148

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 81.8 bits (202), Expect = 9e-17
 Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 15/129 (11%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVGQQL 626
           +F GT +Y+APEI++   +G +VDWW  G+ ++E++ G+ PF+   N   LF +++   +
Sbjct: 155 TFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEAD-NEDDLFESILHDDV 213

Query: 627 RFPDSPATSYASRD---LIRGLLVKEPQHRLG---VKRGATEIKQHPFFEGVNWALI--R 678
            +P      + S++   +++  + K P  RLG    + G   IKQHPFF+ ++W L+  R
Sbjct: 214 LYP-----VWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEIDWVLLEQR 268

Query: 679 CSTPPEVPR 687
              PP  P+
Sbjct: 269 KIKPPFKPK 277

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 81.2 bits (200), Expect = 9e-17
 Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 14/150 (9%)

Query: 545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY 604
           S+LGL +  +PE   E    R    VGT  Y+APE+I  E +  + DWW  G  ++E++ 
Sbjct: 144 SDLGL-AVQIPE--GETVRGR----VGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQ 196

Query: 605 GKTPFKGSGNRATLFNVVGQQLRFPD---SPATSYASRDLIRGLLVKEPQHRLGVK-RGA 660
           G++PF+    R      V ++++      S   S  ++ + R LL K P+ RLG +  GA
Sbjct: 197 GQSPFRKRKERVK-REEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGA 255

Query: 661 TEIKQHPFFEGVNWALIRCST--PPEVPRP 688
             +KQHP F+ +N+  +  +   PP  P P
Sbjct: 256 AGVKQHPIFKNINFKRLEANMLEPPFCPDP 285

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 17/158 (10%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTE-----REI- 384
             + L++ +G G    VY +         A+K +D         L + QT      +E+ 
Sbjct: 1   DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRID---------LEKCQTSVDELRKEVQ 51

Query: 385 -LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGD-LHTLRQRQPGKHFSEYAARFYAAEV 442
            +   +HP +   YT F       LVM Y  GG  L  ++   P     E        EV
Sbjct: 52  AMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEV 111

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           L  LEYLH  G ++RD+K  N+L+ +DG + ++DF +S
Sbjct: 112 LKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVS 149

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 79.9 bits (198), Expect = 1e-16
 Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 8/152 (5%)

Query: 334 RLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE--ILQLLDHP 391
            L K+LG G  G VY   L        ++V  K       +    +  RE  I++ LDHP
Sbjct: 2   TLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHP 61

Query: 392 FLPTLY---THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
            +  L    T  E      +VMEY PGGDL    ++   K  S      +A ++   +EY
Sbjct: 62  NIVKLLGVCTEEEP---LMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEY 118

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           L     ++RDL   N LV ++  + +SDF LS
Sbjct: 119 LESKNFIHRDLAARNCLVGENLVVKISDFGLS 150

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           H+  ++ LG G  G   L   +        K ++   L S K+   A  E  IL LL HP
Sbjct: 1   HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRL-SEKERRDALNEIVILSLLQHP 59

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
            +   Y HF  D    + MEY  GG L+    RQ G+ F E    +Y  +++ A+ Y+H 
Sbjct: 60  NIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHK 119

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            G+++RD+K  N+ +   G I L DF +S
Sbjct: 120 AGILHRDIKTLNIFLTKAGLIKLGDFGIS 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 13/153 (8%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQLLDH 390
           +++L R+G G  G V+ ++   T    A+K   K +L   +     Q  REI  LQ   H
Sbjct: 2   YKILGRIGEGAHGIVFKAKDRETGETVALK---KVALRRLEGGIPNQALREIKALQACQH 58

Query: 391 PFLPTLYTHF-ETDRFSCLVMEYCPGGDLHTL--RQRQPGKHFSEYAARFYAAEVLLALE 447
           P++  L   F     F  LVMEY P  DL  +   + +P     E   + Y   +L  + 
Sbjct: 59  PYVVKLLDVFPHGSGFV-LVMEYMPS-DLSEVLRDEERP---LPEAQVKSYMRMLLKGVA 113

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           Y+H  G+++RDLKP N+L+  DG + ++DF L+
Sbjct: 114 YMHANGIMHRDLKPANLLISADGVLKIADFGLA 146

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 77.7 bits (192), Expect = 9e-16
 Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 5/148 (3%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F LL+ +G G  G VY +    T    A+KV+D     +  ++   Q E + L     P+
Sbjct: 3   FTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEE--AEDEIEDIQQEIQFLSQCRSPY 60

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +   Y  F       ++MEYC GG    L +        E    F   EVLL LEYLH  
Sbjct: 61  ITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGK---LDETYIAFILREVLLGLEYLHEE 117

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           G ++RD+K  N+L+ ++G + L+DF +S
Sbjct: 118 GKIHRDIKAANILLSEEGDVKLADFGVS 145

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 16/161 (9%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKK--LTRAQTEREILQLLD 389
            + +L+ +G G  G+V      S       K +D  ++  ++K  L    +E  IL+ L 
Sbjct: 1   DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLV---SEVNILRELK 57

Query: 390 HPFLPTLYTHFETDRFSC---LVMEYCPGGDLHTL--RQRQPGKHFSEYAARFYAAEVLL 444
           HP +   Y     DR +    +VMEYC GGDL  L  + ++  K+  E        ++LL
Sbjct: 58  HPNIVRYYDR-IIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLL 116

Query: 445 ALEYLHMLG-----VVYRDLKPENVLVRDDGHIMLSDFDLS 480
           AL   H        V++RDLKP N+ +  + ++ L DF L+
Sbjct: 117 ALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLA 157

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 77.2 bits (191), Expect = 1e-15
 Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 22/159 (13%)

Query: 337 KRLGCGDIGSVYLSELS-----STRCYFAMKVM-DKASLASRKKLTRAQTEREILQLLDH 390
           K+LG G  G VY  +L      +T    A+K + + AS   RK   +   E  +++ L H
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEV--AVKTLKEDASEEERKDFLK---EARVMKKLGH 55

Query: 391 PFLPTLYTHFETDRFS-CLVMEYCPGGDLHT-LRQRQPGKHFSEYAARF-------YAAE 441
           P +  L     T+     LV+EY  GGDL   LR+ +P    S   +         +A +
Sbjct: 56  PNVVRLL-GVCTEEEPLYLVLEYMEGGDLLDYLRKSRP-VFPSPEKSTLSLKDLLSFAIQ 113

Query: 442 VLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +   +EYL     V+RDL   N LV +D  + +SDF LS
Sbjct: 114 IAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLS 152

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 77.6 bits (192), Expect = 1e-15
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             ++ L+++G G  G VY +   +T    A+K M       ++       E  I++   H
Sbjct: 19  ELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMR----LRKQNKELIINEILIMKDCKH 74

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P +   Y  +       +VMEY  GG L T    Q     +E    +   EVL  LEYLH
Sbjct: 75  PNIVDYYDSYLVGDELWVVMEYMDGGSL-TDIITQNFVRMNEPQIAYVCREVLQGLEYLH 133

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDF 477
              V++RD+K +N+L+  DG + L+DF
Sbjct: 134 SQNVIHRDIKSDNILLSKDGSVKLADF 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 76.8 bits (190), Expect = 2e-15
 Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 5/150 (3%)

Query: 334 RLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE--ILQLLDHP 391
            L K+LG G  G VY  +L        ++V  K       +    +  RE  I++ LDHP
Sbjct: 2   TLGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHP 61

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
            +  L      +    +VMEY  GGDL + LR+ +P    S      +A ++   +EYL 
Sbjct: 62  NVVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRP--KLSLSDLLSFALQIARGMEYLE 119

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
               ++RDL   N LV ++  + +SDF LS
Sbjct: 120 SKNFIHRDLAARNCLVGENLVVKISDFGLS 149

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 76.2 bits (187), Expect = 3e-15
 Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 7/125 (5%)

Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPF---KGSGNRATLFNVVGQQL 626
           VGT  Y+APE++K E +  + DWW  G  L+E++ G++PF   K    R  +  +V +++
Sbjct: 162 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLV-KEV 220

Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALIRCST--PP 683
           +   S   S  +R L + LL K+P+ RLG +  GA E+K+HP F+ +N+  +      PP
Sbjct: 221 QEEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQINFKRLEAGMLEPP 280

Query: 684 EVPRP 688
             P P
Sbjct: 281 FKPDP 285

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 76.2 bits (187), Expect = 3e-15
 Identities = 42/146 (28%), Positives = 80/146 (54%), Gaps = 2/146 (1%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + ++K++G G  G +YL++  S   +  +K +D   +  ++K   ++ E  +L  + HP 
Sbjct: 2   YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEK-EASKKEVILLAKMKHPN 60

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           + T +  F+ +    +VMEYC GGDL     RQ G  FSE     +  ++ L L+++H  
Sbjct: 61  IVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR 120

Query: 453 GVVYRDLKPENVLVRDDGHIM-LSDF 477
            +++RD+K +N+ +  +G +  L DF
Sbjct: 121 KILHRDIKSQNIFLSKNGMVAKLGDF 146

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 13/157 (8%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHP 391
           F L++ +G G  G VY +    T    A+K+MD   +   ++    + E  IL+   +HP
Sbjct: 8   FELVEVIGEGTYGKVYKARHKKTGQLVAIKIMD--IIEDEEE--EIKEEYNILRKYSNHP 63

Query: 392 FLPTLYTHFETDRFSC------LVMEYCPGGDLHTLRQ--RQPGKHFSEYAARFYAAEVL 443
            + T Y  F             LVME C GG +  L +  R+ GK   E    +   E L
Sbjct: 64  NIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETL 123

Query: 444 LALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             L YLH   V++RD+K +N+L+  +  + L DF +S
Sbjct: 124 RGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVS 160

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 74.6 bits (184), Expect = 9e-15
 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 14/152 (9%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           F +L++LG G  GSVY +    T    A+KV+  +  L    K      E  IL+  D P
Sbjct: 5   FDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIK------EISILKQCDSP 58

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGG---DLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
           ++   Y  +  +    +VMEYC  G   D+  +  +      +E        + L  LEY
Sbjct: 59  YIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKT----LTEEEIAAILYQTLKGLEY 114

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           LH    ++RD+K  N+L+ ++G   L+DF +S
Sbjct: 115 LHSNKKIHRDIKAGNILLNEEGQAKLADFGVS 146

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 6/148 (4%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPT 395
           ++ +G G  G V+L    + +    +K +    +   ++L  AQ E ++L+LL HP +  
Sbjct: 5   IRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLA-AQNECQVLKLLSHPNIIE 63

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
            Y +F  D+   +VMEY PGG L    Q++      E     +  ++LLAL ++H   ++
Sbjct: 64  YYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLIL 123

Query: 456 YRDLKPENVLVRDDGHIM---LSDFDLS 480
           +RDLK +N+L+  D H M   + DF +S
Sbjct: 124 HRDLKTQNILL--DKHKMVVKIGDFGIS 149

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 14/149 (9%)

Query: 545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY 604
           S+LGL +  L +   +    R+    GT+ Y+APEI+K E +   VDW+  G  ++E++ 
Sbjct: 137 SDLGL-AVELKD--GKTITQRA----GTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVA 189

Query: 605 GKTPFKGSGNRAT----LFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGA 660
           G+TPFK    +          +  +++F     T   S+D+ R  L K+P+ RLG +   
Sbjct: 190 GRTPFKDHKEKVAKEELKRRTLEDEVKFEHQNFTE-ESKDICRLFLAKKPEDRLGSREKN 248

Query: 661 TEIKQHPFFEGVNWALIRCS--TPPEVPR 687
            + ++H FF+ +N+  +      PP VP 
Sbjct: 249 DDPRKHEFFKTINFPRLEAGLIPPPFVPD 277

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 4/150 (2%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             + ++  LG G  G VY ++   T  + A K++    + S ++L     E +IL    H
Sbjct: 5   DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQ---IESEEELEDFMVEIDILSECKH 61

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P +  LY  +  +    +++E+C GG L ++   +  +  +E   R+   ++L AL +LH
Sbjct: 62  PNIVGLYEAYFYENKLWILIEFCDGGALDSIML-ELERGLTEPQIRYVCRQMLEALNFLH 120

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              V++RDLK  N+L+  DG + L+DF +S
Sbjct: 121 SHKVIHRDLKAGNILLTLDGDVKLADFGVS 150

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 69/330 (20%), Positives = 115/330 (34%), Gaps = 88/330 (26%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F++ K++G G    VY +         A+K +    +   K       E ++L+ LDHP 
Sbjct: 4   FKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPN 63

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDL-----HTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           +      F  +    +V+E    GDL     H  +Q++      E     Y  ++  ALE
Sbjct: 64  VIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRL---IPERTIWKYFVQLCSALE 120

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGS 507
           ++H   +++RD+KP NV +   G + L D  L                            
Sbjct: 121 HMHSKRIMHRDIKPANVFITATGVVKLGDLGLG--------------------------- 153

Query: 508 FCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM 567
                                 R F      KT    S +G P    PE + E       
Sbjct: 154 ----------------------RFF----SSKTTAAHSLVGTPYYMSPERIHE------- 180

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG-NRATLFNVVGQQL 626
                            G+    D W+ G  L+E+   ++PF G   N  +L   + ++ 
Sbjct: 181 ----------------NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKI-EKC 223

Query: 627 RFPDSPATSYAS--RDLIRGLLVKEPQHRL 654
            +P  PA  Y+   RDL+   +  +P+ R 
Sbjct: 224 DYPPLPADHYSEELRDLVSRCINPDPEKRP 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 72.3 bits (177), Expect = 5e-14
 Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 7/151 (4%)

Query: 335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRK--KLTRAQTEREILQLLDHPF 392
           L +RLG G  G+VYL +         +KV+ +  +      +  +A  E ++L  LDHP 
Sbjct: 4   LQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPA 63

Query: 393 LPTLYTHF-ETDRFSCLVMEYCPGGDLHTLRQ--RQPGKHFSEYAARFYAAEVLLALEYL 449
           +   +  F E D F C++ EYC G DL    +  +  GK  SE     +  ++LL + Y+
Sbjct: 64  IVKFHASFLERDAF-CIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYM 122

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           H   +++RDLK +N+ ++++  + + DF +S
Sbjct: 123 HQRRILHRDLKAKNIFLKNN-LLKIGDFGVS 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 71.9 bits (176), Expect = 7e-14
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 3/155 (1%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + +L+ +G G  G   L +  ++   +AMK +     +S  + +R   E  +L  + HP 
Sbjct: 2   YNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSR--KEAVLLAKMKHPN 59

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +      FE D    +VMEYC GGDL    + Q GK F E     +  ++ L ++++H  
Sbjct: 60  IVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEK 119

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP 487
            V++RD+K +N+ +  +G + L DF  S R   SP
Sbjct: 120 RVLHRDIKSKNIFLTQNGKVKLGDFG-SARLLTSP 153

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 72.1 bits (178), Expect = 7e-14
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 382 REI--LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYA 439
           REI  L+ L HP +  L     T+R   LV EYC   DL     ++PG   S    +   
Sbjct: 47  REISLLKELKHPNIVKLLDVIHTERKLYLVFEYCDM-DLKKYLDKRPGP-LSPNLIKSIM 104

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            ++L  L Y H   +++RDLKP+N+L+  DG + L+DF L+
Sbjct: 105 YQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLA 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 72.4 bits (177), Expect = 8e-14
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + ++  LG G  G VY ++   T    A KV++  S    ++L     E EIL   +HP+
Sbjct: 14  WEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKS---EEELEDYMVEIEILATCNHPY 70

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  L   F  D    +++E+CPGG +  +   +  +  +E   +    ++L AL+YLH +
Sbjct: 71  IVKLLGAFYWDGKLWIMIEFCPGGAVDAI-MLELDRGLTEPQIQVICRQMLEALQYLHSM 129

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFC 509
            +++RDLK  NVL+  DG I L+DF +S +     TL +  S    P    P    C
Sbjct: 130 KIIHRDLKAGNVLLTLDGDIKLADFGVSAKNV--KTLQRRDSFIGTPYWMAPEVVMC 184

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 72.1 bits (177), Expect = 9e-14
 Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 8/150 (5%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMK-VMDKASLASRKKLTRAQTEREILQLLDHPFLP 394
           L RLG G  GSV    L +T   FA+K +    +   +K++ R   E EI +    P++ 
Sbjct: 6   LSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILR---ELEINKSCKSPYIV 62

Query: 395 TLYTHFETDRFSCL--VMEYCPGGDLHTL--RQRQPGKHFSEYAARFYAAEVLLALEYLH 450
             Y  F  +  S +   MEYC GG L ++  + ++ G    E      A  VL  L YLH
Sbjct: 63  KYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLH 122

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +++RD+KP N+L+   G + L DF +S
Sbjct: 123 SRKIIHRDIKPSNILLTRKGQVKLCDFGVS 152

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 72.2 bits (177), Expect = 9e-14
 Identities = 78/342 (22%), Positives = 126/342 (36%), Gaps = 93/342 (27%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           +   +++G G  G+VY +   +T    A+K M+   L  + K      E  +++   HP 
Sbjct: 21  YTRFEKIGQGASGTVYTAIDVATGQEVAIKQMN---LQQQPKKELIINEILVMRENKHPN 77

Query: 393 LPTLYTHFETDRFSCLVMEYCPGG---DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           +      +       +VMEY  GG   D+ T      G    + AA     E L ALE+L
Sbjct: 78  IVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEG----QIAA--VCRECLQALEFL 131

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFC 509
           H   V++RD+K +N+L+  DG + L+DF                              FC
Sbjct: 132 HSNQVIHRDIKSDNILLGMDGSVKLTDF-----------------------------GFC 162

Query: 510 VQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF 569
            Q                   I P+++K+ T                             
Sbjct: 163 AQ-------------------ITPEQSKRST----------------------------M 175

Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNVVGQQLRF 628
           VGT  ++APE++  + +G  VD W+ GI   E++ G+ P+      RA            
Sbjct: 176 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPEL 235

Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
            +    S   RD +   L  + + R      A E+ QHPF +
Sbjct: 236 QNPEKLSAIFRDFLNRCLEMDVEKRG----SAKELLQHPFLK 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 71.3 bits (174), Expect = 1e-13
 Identities = 80/345 (23%), Positives = 128/345 (37%), Gaps = 94/345 (27%)

Query: 333 FRLLKRLGCGDIGSVYL-------SELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL 385
           +R  K LG G  G VYL        EL++ +  F     D  S  + K+++  + E ++L
Sbjct: 4   WRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQF-----DPESPETSKEVSALECEIQLL 58

Query: 386 QLLDHPFLPTLYTHFE--TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVL 443
           + L H  +   Y       ++   + MEY PGG +    Q +     +E   R Y  ++L
Sbjct: 59  KNLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKD--QLKAYGALTESVTRKYTRQIL 116

Query: 444 LALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRG 503
             + YLH   +V+RD+K  N+L    G++ L DF  S R                     
Sbjct: 117 EGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKR--------------------- 155

Query: 504 PGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA 563
                 +Q  C+  + +                       RS  G P    PE+++    
Sbjct: 156 ------LQTICMSGTGI-----------------------RSVTGTPYWMSPEVIS---- 182

Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
                              GEG+G   D W+ G  + E+L  K P+      A +F +  
Sbjct: 183 -------------------GEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIAT 223

Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           Q          S  +RD +  + V E +HR      A E+ +HPF
Sbjct: 224 QPTNPQLPSHISEHARDFLGCIFV-EARHR----PSAEELLRHPF 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 14/167 (8%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           S ++ L+ +G G  G+VY  +   T    A+K+++  +      ++  Q E  +L  L  
Sbjct: 1   SLYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDT--PDDDVSDIQREVALLSQLRQ 58

Query: 391 PFLPTLYTHFET---DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
              P +  ++ +        ++MEY  GG + TL +  P    +E        EVL+AL+
Sbjct: 59  SQPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAGP---IAEKYISVIIREVLVALK 115

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
           Y+H +GV++RD+K  N+LV + G++ L DF       V+  L + SS
Sbjct: 116 YIHKVGVIHRDIKAANILVTNTGNVKLCDF------GVAALLNQNSS 156

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 6/150 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS-LASRKKLTRAQTEREILQLLDHP 391
              L  LG G+ G V       T    A+K +      A +K++ R   E +IL   + P
Sbjct: 3   LEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILR---ELDILHKCNSP 59

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH- 450
           ++   Y  F  +    + MEY  GG L  + +   G+   E      A  VL  L YLH 
Sbjct: 60  YIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQGR-IPERILGKIAVAVLKGLTYLHE 118

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +++RD+KP N+LV   G I L DF +S
Sbjct: 119 KHKIIHRDVKPSNILVNSRGQIKLCDFGVS 148

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 70.5 bits (172), Expect = 2e-13
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 9/173 (5%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F L++R+G G  G VY +   +T    A+KV+    L   +     Q E  +++   H  
Sbjct: 11  FELIQRIGSGTYGDVYKARNVNTGELAAIKVI---KLEPGEDFAVVQQEIIMMKDCKHSN 67

Query: 393 LPTLY-THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
           +   + ++   D+   + ME+C GG L  +         SE    + + E L  L YLH 
Sbjct: 68  IVAYFGSYLRRDKL-WICMEFCGGGSLQDIYHVT--GPLSESQIAYVSRETLQGLYYLHS 124

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGP 504
            G ++RD+K  N+L+ D+GH+ L+DF +S +  ++ T+ K  S    P    P
Sbjct: 125 KGKMHRDIKGANILLTDNGHVKLADFGVSAQ--ITATIAKRKSFIGTPYWMAP 175

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 69.9 bits (171), Expect = 4e-13
 Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 14/188 (7%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMD----KASLASRKKLTRAQTEREI--LQLLDHP- 391
           +G G  GSVYL   +S+    A+K ++     AS   RK+       REI  L+ L H  
Sbjct: 8   IGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN 67

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
            +  L +  + D  + + +EY PGG +  L        F E   R +  ++L  L YLH 
Sbjct: 68  IVQYLGSSLDADHLN-IFLEYVPGGSVAALLNNYGA--FEETLVRNFVRQILKGLNYLHN 124

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RD+K  N+LV + G I +SDF +S +  +    + T +  + PS +  G  F + 
Sbjct: 125 RGIIHRDIKGANILVDNKGGIKISDFGISKK--LEANSLSTKTNGARPSLQ--GSVFWMA 180

Query: 512 PACIEPSS 519
           P  ++ +S
Sbjct: 181 PEVVKQTS 188

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 8/154 (5%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQLLDHPFL 393
           L ++G G  G VY +    T    A+K   K  L    +       REI  L+ L+HP +
Sbjct: 4   LGKIGEGTYGVVYKARDKLTGEIVAIK---KIKLRFESEGIPKTALREIKLLKELNHPNI 60

Query: 394 PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG 453
             L   F       LV E+        ++ RQ  +   E   + Y  ++L  L + H  G
Sbjct: 61  IKLLDVFRHKGDLYLVFEFMDTDLYKLIKDRQ--RGLPESLIKSYLYQLLQGLAFCHSHG 118

Query: 454 VVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP 487
           +++RDLKPEN+L+  +G + L+DF L+ R   SP
Sbjct: 119 ILHRDLKPENLLINTEGVLKLADFGLA-RSFGSP 151

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 69.8 bits (171), Expect = 5e-13
 Identities = 82/375 (21%), Positives = 130/375 (34%), Gaps = 137/375 (36%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE-------ILQLLD 389
            ++G G  G V ++   ST    A+K MD           R Q  RE       I++   
Sbjct: 25  VKIGEGSTGIVCIATDKSTGRQVAVKKMD----------LRKQQRRELLFNEVVIMRDYQ 74

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL-----HTLRQRQPGKHFSEYAARFYAAEVLL 444
           HP +  +Y+ +       +VME+  GG L     HT          +E         VL 
Sbjct: 75  HPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTHT--------RMNEEQIATVCLAVLK 126

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGP 504
           AL +LH  GV++RD+K +++L+  DG + LSDF                           
Sbjct: 127 ALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDF--------------------------- 159

Query: 505 GGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA 564
              FC Q +                        K+  + +S +G P    PE+++     
Sbjct: 160 --GFCAQVS------------------------KEVPRRKSLVGTPYWMAPEVISR---- 189

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
                                +G+ VD W+ GI + E++ G+ P+         FN    
Sbjct: 190 -------------------LPYGTEVDIWSLGIMVIEMVDGEPPY---------FNEPPL 221

Query: 625 QL--RFPDSPA--------TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
           Q   R  D+           S   R  +  +LV++P  R      A E+  HPF      
Sbjct: 222 QAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRA----TAAELLNHPF------ 271

Query: 675 ALIRCSTPPEVPRPM 689
             +  + PP    P+
Sbjct: 272 --LAKAGPPSSIVPL 284

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 69.5 bits (170), Expect = 6e-13
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 16/158 (10%)

Query: 333 FRLLKRLGCGDIGSVYL-------SELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL 385
           +R  K LG G  G VYL        EL+  +  F     D  S  ++K++   + E ++L
Sbjct: 4   WRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPF-----DPDSPETKKEVNALECEIQLL 58

Query: 386 QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLL 444
           + L H  +   Y     D    + MEY PGG +   L+        +E   R Y  ++L 
Sbjct: 59  KNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYGA---LTETVTRKYTRQILE 115

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
            +EYLH   +V+RD+K  N+L    G++ L DF  S R
Sbjct: 116 GVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKR 153

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 68.4 bits (168), Expect = 9e-13
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
             + VGT  ++APE+I G+ +    D W+ GI   EL  GK P+        LF +    
Sbjct: 154 RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIA--T 211

Query: 626 LRFPDSPATSYAS---RDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
              P        S   +D ++  L K P+ R      A ++ +HPF
Sbjct: 212 NGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRP----TAEQLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 38/145 (26%), Positives = 76/145 (52%), Gaps = 1/145 (0%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPT 395
           +K++G G  G   L +       + +K ++ + ++ +++   ++ E  +L  + HP +  
Sbjct: 5   VKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKER-EESRKEVAVLSNMKHPNIVQ 63

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
               FE +    +VM+YC GGDL+     Q G  F E     +  ++ LAL+++H   ++
Sbjct: 64  YQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKIL 123

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLS 480
           +RD+K +N+ +  DG I L DF ++
Sbjct: 124 HRDIKSQNIFLTKDGTIKLGDFGIA 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 11/150 (7%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQ-------TEREILQLLDHP 391
           +G G  G VYL+   +T    A+K ++  +  + +  +R +       +E E L+ LDH 
Sbjct: 9   IGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68

Query: 392 FLPTLYTHFETDRFS-CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
            +   Y  FET      + +EY PGG + +   R  G+ F E   RF+  +VL  L YLH
Sbjct: 69  NIVQ-YLGFETTEEYLSIFLEYVPGGSIGSC-LRTYGR-FEEQLVRFFTEQVLEGLAYLH 125

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             G+++RDLK +N+LV  DG   +SDF +S
Sbjct: 126 SKGILHRDLKADNLLVDADGICKISDFGIS 155

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 67.3 bits (164), Expect = 2e-12
 Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLP 394
            ++ +G G  G V L    +    + +K ++  + ASR++   A+ E ++L  L HP + 
Sbjct: 4   FVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRN-ASRRERKAAEQEAQLLSQLKHPNIV 62

Query: 395 TLYTHFE-TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG 453
                +E  D    +VM +C GGDL+   + Q GK   E     +  ++ +AL+YLH   
Sbjct: 63  AYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKH 122

Query: 454 VVYRDLKPENVLVRDDGHIMLSDFD----LSLRCAVSPTLIKT 492
           +++RDLK +NV +     I + D      L  +C ++ TLI T
Sbjct: 123 ILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGT 165

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 67.0 bits (163), Expect = 4e-12
 Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 8/153 (5%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            + ++  LG G  G VY ++   T    A KV+D  S    ++L     E +IL   DHP
Sbjct: 6   FWEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKS---EEELEDYMVEIDILASCDHP 62

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGG--DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
            +  L   F  +    +++E+C GG  D   L   +P    +E   R    + L AL YL
Sbjct: 63  NIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERP---LTEPQIRVVCKQTLEALNYL 119

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
           H   +++RDLK  N+L   DG I L+DF +S +
Sbjct: 120 HENKIIHRDLKAGNILFTLDGDIKLADFGVSAK 152

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 5/153 (3%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQLLD 389
           H + +K+LG G  G V L            +V  K+   S ++  R+  EREI  L+ LD
Sbjct: 5   HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLD 64

Query: 390 HPFLPTL-YTHFETDRFS-CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           H  +        +    S  L+MEY P G L    QR   +   +    F ++++   ++
Sbjct: 65  HENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLF-SSQICKGMD 123

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           YL     ++RDL   N+LV  +  + +SDF L+
Sbjct: 124 YLGSQRYIHRDLAARNILVESEDLVKISDFGLA 156

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 66.1 bits (162), Expect = 9e-12
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 15/113 (13%)

Query: 380 TEREI-----LQLLDHPFLPTLY-------THFETDRFSCLVMEYCPGGDLHTLRQRQPG 427
           T REI     L+  +HP +  L        T  E      LV E+    DL T   + P 
Sbjct: 45  TLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLT--LVFEHVDQ-DLATYLSKCPK 101

Query: 428 KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                   +    ++L  +++LH   +V+RDLKP+N+LV  DG + ++DF L+
Sbjct: 102 PGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLA 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 2/145 (1%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L+ +G G  G+VY +    T    A+K M  +   S +K      E   LQ L HP 
Sbjct: 17  FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPN 76

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
                  +  +  + LVMEYC G     L   +      E AA       L  L YLH  
Sbjct: 77  TIEYKGCYLREHTAWLVMEYCLGSASDILEVHKKPLQEVEIAA--ICHGALQGLAYLHSH 134

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDF 477
             ++RD+K  N+L+ + G + L+DF
Sbjct: 135 ERIHRDIKAGNILLTEPGTVKLADF 159

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 27/163 (16%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDK----ASLASRKKLTRAQTEREI--L 385
            ++ L  +G G  G V  +  + T    A+K + +    A  A R       T RE+  L
Sbjct: 16  RYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKR-------TYRELRLL 68

Query: 386 QLLDHP--------FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARF 437
           + +DH         F P   +  E  +   LV     G DL+ + + Q     S+   +F
Sbjct: 69  KHMDHENVIGLLDVFTPA--SSLEDFQDVYLVTHLM-GADLNNIVKCQK---LSDDHIQF 122

Query: 438 YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              ++L  L+Y+H  G+++RDLKP N+ V +D  + + DF L+
Sbjct: 123 LVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLA 165

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 64.4 bits (158), Expect = 2e-11
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           + VGT  YL+PE+ + + +    D W+ G  L+EL   K PF+G         ++  Q  
Sbjct: 162 TVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQYP 221

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHR 653
            P     S   R+L+  LL K+P+ R
Sbjct: 222 -PIPSQYSSELRNLVSSLLQKDPEER 246

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 7/114 (6%)

Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-- 615
           V E T  +  +FVGT  Y++PE I+GE +  A D W+ G+ L E   GK PF   G    
Sbjct: 149 VLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSF 208

Query: 616 -ATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
              +  +         +   S   RD I   L K+P+ R      A E+ QHPF
Sbjct: 209 FELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKKR----PSAAELLQHPF 258

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 557 LVAEPTAARSM--SFVGTHEYLAPEIIKG---EGHGSAVDWWTFGIFLHELLYGKTPFKG 611
           L    T       S  GT  Y+APE+I G   +GHG A D W+ G  + E+  GK P+  
Sbjct: 149 LKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSE 208

Query: 612 SGNR-ATLFNV-VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             N    +F+V  G +   PDS   S   +D +   L  +P+ R      A+E+ QHPF
Sbjct: 209 LDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPKKRP----TASELLQHPF 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 14/129 (10%)

Query: 361 MKVMDKAS---LASRKKLTRAQTE-------REI--LQLLDHPFLPTLYTHFETDRFSCL 408
           +K  +KA+   +A +K       E       RE+  L+ L H  +  L   F       L
Sbjct: 18  LKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYL 77

Query: 409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD 468
           V EY     L  L     G      A R Y  ++L A+ Y H   +++RD+KPEN+LV +
Sbjct: 78  VFEYVERTLLELLEASPGG--LPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSE 135

Query: 469 DGHIMLSDF 477
            G + L DF
Sbjct: 136 SGVLKLCDF 144

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 18/140 (12%)

Query: 342 GDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH--PFLPTLYTH 399
           G I  V L   + T+  F +K + K+S  SR++LT          ++ H  P +  L+ +
Sbjct: 4   GVIDKVLLVMDTRTQQTFILKGLRKSSEYSRERLT----------IIPHCVPNMVCLHKY 53

Query: 400 FETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYR 457
             ++    LV+++  GG L  H  +      +  E   + +AAE+++AL+ LH  G+V R
Sbjct: 54  IVSEDSVFLVLQHAEGGKLWSHISKF----LNIPEECVKRWAAEMVVALDALHREGIVCR 109

Query: 458 DLKPENVLVRDDGHIMLSDF 477
           DL P N+L+ D GHI L+ F
Sbjct: 110 DLNPNNILLDDRGHIQLTYF 129

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 12/149 (8%)

Query: 337 KRLGCGDIGSV---YLSELSSTRCYFAMKVM-DKASLASRKKLTRAQTEREILQLLDHPF 392
           K LG G+ GSV        S      A+K +  +   A +K+  R   E  ++  LDHP 
Sbjct: 1   KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLR---EASVMAQLDHPC 57

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
           +  L    + +    LVME  P G L   L++R+          +  A +V + + YL  
Sbjct: 58  IVRLIGVCKGEPL-MLVMELAPLGPLLKYLKKRR---EIPVSDLKELAHQVAMGMAYLES 113

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              V+RDL   NVL+ +     +SDF +S
Sbjct: 114 KHFVHRDLAARNVLLVNRHQAKISDFGMS 142

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 64.7 bits (157), Expect = 3e-11
 Identities = 79/355 (22%), Positives = 128/355 (36%), Gaps = 112/355 (31%)

Query: 338 RLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD--HPFLPT 395
           ++G G  G V ++    +    A+K+MD      RK+  R     E++ + D  H  +  
Sbjct: 28  KIGEGSTGIVCIAREKHSGRQVAVKMMD-----LRKQQRRELLFNEVVIMRDYQHQNVVE 82

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           +Y  +       ++ME+  GG L  +  +      +E         VL AL YLH  GV+
Sbjct: 83  MYKSYLVGEELWVLMEFLQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYLHSQGVI 139

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACI 515
           +RD+K +++L+  DG + LSDF                              FC Q +  
Sbjct: 140 HRDIKSDSILLTLDGRVKLSDF-----------------------------GFCAQIS-- 168

Query: 516 EPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY 575
                                 K   K +S +G P    PE+++                
Sbjct: 169 ----------------------KDVPKRKSLVGTPYWMAPEVISRTP------------- 193

Query: 576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPA-- 633
                     +G+ VD W+ GI + E++ G+ P+          + V    R  DSP   
Sbjct: 194 ----------YGTEVDIWSLGIMVIEMVDGEPPYFSD-------SPVQAMKRLRDSPPPK 236

Query: 634 ------TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTP 682
                  S   RD +  +L +EPQ R      A E+  HPF       L++   P
Sbjct: 237 LKNAHKISPVLRDFLERMLTREPQER----ATAQELLDHPF-------LLQTGLP 280

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 64.5 bits (158), Expect = 4e-11
 Identities = 48/160 (30%), Positives = 66/160 (41%), Gaps = 5/160 (3%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQLLDHPFL 393
            K+LG G    VY +    T    A+K +        K        REI  LQ L HP +
Sbjct: 5   GKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNI 64

Query: 394 PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG 453
             L   F       LV E+    DL  +  +      +    + Y    L  LEYLH   
Sbjct: 65  IGLLDVFGHKSNINLVFEFMET-DLEKV-IKDKSIVLTPADIKSYMLMTLRGLEYLHSNW 122

Query: 454 VVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS 493
           +++RDLKP N+L+  DG + L+DF L+     SP    T 
Sbjct: 123 ILHRDLKPNNLLIASDGVLKLADFGLARSFG-SPNRKMTH 161

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 63.9 bits (155), Expect = 4e-11
 Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 15/187 (8%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L+R+G G  G V+    + T+   A+K++D     +  ++   Q E  +L   D P+
Sbjct: 6   FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEE--AEDEIEDIQQEITVLSQCDSPY 63

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +   Y  +       ++MEY  GG    L +  P   F E+       E+L  L+YLH  
Sbjct: 64  VTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGP---FDEFQIATMLKEILKGLDYLHSE 120

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQP 512
             ++RD+K  NVL+ + G + L+DF ++ +  ++ T IK ++    P        F + P
Sbjct: 121 KKIHRDIKAANVLLSEQGDVKLADFGVAGQ--LTDTQIKRNTFVGTP--------FWMAP 170

Query: 513 ACIEPSS 519
             I+ S+
Sbjct: 171 EVIQQSA 177

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 63/287 (21%), Positives = 96/287 (33%), Gaps = 77/287 (26%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQ---------TERE--IL 385
             LG G  G V  +  + T    A+K +    +++     R           T RE  I+
Sbjct: 15  AHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIM 74

Query: 386 QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLA 445
             + H  +  L   +    F  LVM+     DL  +  R+     +E   +    ++L  
Sbjct: 75  NEIKHENIMGLVDVYVEGDFINLVMDIM-ASDLKKVVDRK--IRLTESQVKCILLQILNG 131

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPG 505
           L  LH    ++RDL P N+ +   G   ++DF L+ R    P                  
Sbjct: 132 LNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPP------------------ 173

Query: 506 GSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR 565
                                         +K +T + R E+                  
Sbjct: 174 -------------------------YSDTLSKDETMQRREEM------------------ 190

Query: 566 SMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKG 611
             S V T  Y APE++ G E +  AVD W+ G    ELL GK  F G
Sbjct: 191 -TSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPG 236

Length = 335

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 63.5 bits (155), Expect = 9e-11
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 1/138 (0%)

Query: 340 GCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTH 399
              D+  V+L++   T    A+K ++  S  S++ L   Q E    + L HP +    T 
Sbjct: 9   CFEDLMIVHLAKHKPTNTLVAVKKINLDS-CSKEDLKLLQQEIITSRQLQHPNILPYVTS 67

Query: 400 FETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDL 459
           F  D    +V      G    L +    +   E A  F   +VL AL+Y+H  G ++R +
Sbjct: 68  FIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSV 127

Query: 460 KPENVLVRDDGHIMLSDF 477
           K  ++L+  DG ++LS  
Sbjct: 128 KASHILLSGDGKVVLSGL 145

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 63.3 bits (155), Expect = 1e-10
 Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 23/161 (14%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMK----VMDKASLASRKKLTRAQTEREI--L 385
            + LLK +G G  G V  +    T    A+K    V D    A R         REI  L
Sbjct: 1   RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKR-------ILREIKLL 53

Query: 386 QLLDHPF---LPTLYTHFETDRFS--CLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYA 439
           + L H     L  +      + F+   +V E     DLH  ++  QP    ++   +++ 
Sbjct: 54  RHLRHENIIGLLDILRPPSPEDFNDVYIVTELMET-DLHKVIKSPQP---LTDDHIQYFL 109

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            ++L  L+YLH   V++RDLKP N+LV  +  + + DF L+
Sbjct: 110 YQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLA 150

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 7/172 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L+R+G G  G VY    + T+   A+K++D     +  ++   Q E  +L   D P+
Sbjct: 6   FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEE--AEDEIEDIQQEITVLSQCDSPY 63

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +   Y  +       ++MEY  GG    L   +PG     Y A     E+L  L+YLH  
Sbjct: 64  ITRYYGSYLKGTKLWIIMEYLGGGS--ALDLLKPGPLEETYIATILR-EILKGLDYLHSE 120

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGP 504
             ++RD+K  NVL+ + G + L+DF ++ +  ++ T IK ++    P    P
Sbjct: 121 RKIHRDIKAANVLLSEQGDVKLADFGVAGQ--LTDTQIKRNTFVGTPFWMAP 170

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 20/180 (11%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L+++G G  G V+    + T+   A+K++D     +  ++   Q E  +L   D P+
Sbjct: 6   FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE--AEDEIEDIQQEITVLSQCDSPY 63

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +   Y  +  D    ++MEY  GG    L +  P     E        E+L  L+YLH  
Sbjct: 64  VTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYLHSE 120

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA---------------VSPTLIKTSSLDS 497
             ++RD+K  NVL+ + G + L+DF ++ +                 ++P +IK S+ DS
Sbjct: 121 KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDS 180

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 382 REI--LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYA 439
           REI  L+ L HP L  L   F   R   LV EYC    L+ L +   G    E+  +   
Sbjct: 49  REIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEKNPRG--VPEHLIKKII 106

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
            + L A+ + H    ++RD+KPEN+L+   G I L DF
Sbjct: 107 WQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDF 144

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 62.1 bits (149), Expect = 3e-10
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 18/138 (13%)

Query: 547 LGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHG---SAVDWWTFGIFLHELL 603
            GL              A   + VGT  Y+APE++ G       S+ D W+ GI L+ELL
Sbjct: 146 FGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELL 205

Query: 604 YGKTPFKGSGNRATL-----------FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQH 652
            G  PF+G  N +                +   L   +    S A+ DL++ LL K+P++
Sbjct: 206 TGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLAKDPKN 265

Query: 653 RLGVKRGATEIKQHPFFE 670
           RL     ++    H    
Sbjct: 266 RL----SSSSDLSHDLLA 279

Length = 384

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 61.6 bits (149), Expect = 3e-10
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPT 395
           L  +G G  G+VY +  S T    A+K M  +   + +K      E + LQ L HP    
Sbjct: 26  LHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIE 85

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
               +  +  + LVMEYC G     L   +      E AA  + A  L  L YLH   ++
Sbjct: 86  YKGCYLKEHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGA--LQGLAYLHSHNMI 143

Query: 456 YRDLKPENVLVRDDGHIMLSDF 477
           +RD+K  N+L+ + G + L+DF
Sbjct: 144 HRDIKAGNILLTEPGQVKLADF 165

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 60.4 bits (146), Expect = 5e-10
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 7/172 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + L++R+G G  G VY +    T    A+K++    L      +  Q E  +++   H  
Sbjct: 11  YELIQRVGSGTYGDVYKARNLHTGELAAVKII---KLEPGDDFSLIQQEIFMVKECKHCN 67

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +   +  + +     + MEYC GG L  +         SE    +   E L  L YLH  
Sbjct: 68  IVAYFGSYLSREKLWICMEYCGGGSLQDIYHVT--GPLSELQIAYVCRETLQGLAYLHSK 125

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGP 504
           G ++RD+K  N+L+ D+G + L+DF ++ +  ++ T+ K  S    P    P
Sbjct: 126 GKMHRDIKGANILLTDNGDVKLADFGVAAK--ITATIAKRKSFIGTPYWMAP 175

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 60.2 bits (146), Expect = 6e-10
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 16/162 (9%)

Query: 333 FRLLKRLGCGDIGSVY-LSELSSTRCYFAMKVMDKASLASRK-KLTRAQTEREIL----- 385
           + +L+ LG G  G VY + + ++ +   A+K ++  + A  K K  R ++  +I+     
Sbjct: 2   YAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTI 61

Query: 386 --QLLDHPFLPTLYTHF-ETDRFSCLVMEY---CPGGDLHTLRQRQPGKHFSEYAARFYA 439
             + L HP +   Y  F E DR   +VM+     P G+ H    ++  + F+E       
Sbjct: 62  IKEQLRHPNIVRYYKTFLENDRLY-IVMDLIEGAPLGE-HFNSLKEKKQRFTEERIWNIF 119

Query: 440 AEVLLALEYLHMLG-VVYRDLKPENVLVRDDGHIMLSDFDLS 480
            +++LAL YLH    +V+RDL P N+++ +D  + ++DF L+
Sbjct: 120 VQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLA 161

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 60.5 bits (146), Expect = 8e-10
 Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 2/145 (1%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L+ +G G  G+VY +    T    A+K M  +   S +K      E + LQ + HP 
Sbjct: 27  FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPN 86

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
                  +  +  + LVMEYC G     L   +      E AA  + A  L  L YLH  
Sbjct: 87  SIEYKGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGA--LQGLAYLHSH 144

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDF 477
            +++RD+K  N+L+ + G + L+DF
Sbjct: 145 NMIHRDIKAGNILLTEPGQVKLADF 169

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 13/106 (12%)

Query: 568 SFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           SF G+  ++APE+I  +G +G A D W+ G  + E+  GK P+      A +F +     
Sbjct: 160 SFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIG---- 215

Query: 627 RFPDSPAT----SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           R  + P      S  ++D I   L ++P  R      A E+ +HPF
Sbjct: 216 RSKELPPIPDHLSDEAKDFILKCLQRDPSLRP----TAAELLEHPF 257

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 10/172 (5%)

Query: 334 RLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHPF 392
             +  LG G+ GSV   +   T    A KV+   A  + RK++ R   E +I+     P+
Sbjct: 8   ETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILR---ELQIMHECRSPY 64

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH-M 451
           + + Y  F  +   C+ ME+   G L  +  ++ G    E   +  A  V+  L YL+ +
Sbjct: 65  IVSFYGAFLNENNICMCMEFMDCGSLDRI-YKKGGPIPVEILGKI-AVAVVEGLTYLYNV 122

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS--LRCAVSPTLIKTSSLDSDPSR 501
             +++RD+KP N+LV   G I L DF +S  L  +++ T + TS+  S P R
Sbjct: 123 HRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMS-PER 173

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 6/156 (3%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVM--DKASLASRKKLTRAQTEREILQLL 388
           +++RL K LG G  G VYL   + T    A+K +  D  S  + K++   + E ++L+ L
Sbjct: 2   TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNL 61

Query: 389 DHPFLPTLYTHFE--TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
            H  +   Y       +R   + ME+ PGG +    Q +     +E   R Y  ++L  +
Sbjct: 62  LHERIVQYYGCLRDPMERTLSIFMEHMPGGSIKD--QLKSYGALTENVTRKYTRQILEGV 119

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
            YLH   +V+RD+K  N+L    G++ L DF  S R
Sbjct: 120 SYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKR 155

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 10/148 (6%)

Query: 334 RLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHPF 392
           +  + LG G+ G+VY +    TR   A+KV+    ++  +K++    +E EIL   D P+
Sbjct: 4   QYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIM---SELEILYKCDSPY 60

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +   Y  F  +    +  E+  GG L   R+        E+     A  V+  L YL  L
Sbjct: 61  IIGFYGAFFVENRISICTEFMDGGSLDVYRK------IPEHVLGRIAVAVVKGLTYLWSL 114

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            +++RD+KP N+LV   G + L DF +S
Sbjct: 115 KILHRDVKPSNMLVNTRGQVKLCDFGVS 142

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVM--DKASLASRKKLTRAQTEREILQLLD 389
           ++RL K LG G  G VYL   + T    A+K +  D  S  + K++   + E ++L+ L 
Sbjct: 3   NWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLR 62

Query: 390 HPFLPTLYTHFE--TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           H  +   Y       ++   + +EY PGG +    Q +     +E   R Y  ++L  + 
Sbjct: 63  HDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKD--QLKAYGALTENVTRRYTRQILQGVS 120

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
           YLH   +V+RD+K  N+L    G++ L DF  S R
Sbjct: 121 YLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKR 155

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 16/168 (9%)

Query: 320 AIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQ 379
           A+R   GI     F L++ +G G  G VY      T    A+KVMD     +  +    +
Sbjct: 10  ALRDPAGI-----FELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMD----VTEDEEEEIK 60

Query: 380 TEREILQLLDHPF-LPTLYTHF------ETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSE 432
            E  +L+   H   + T Y  F        D    LVME+C  G +  L +   G    E
Sbjct: 61  LEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKE 120

Query: 433 YAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
               +   E+L  L +LH   V++RD+K +NVL+ ++  + L DF +S
Sbjct: 121 DWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVS 168

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 28/168 (16%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           S +  L+ LGCG  G V+ +  S      A+K   K  L   + +  A  E +I++ LDH
Sbjct: 5   SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVK---KIVLTDPQSVKHALREIKIIRRLDH 61

Query: 391 PFLPTLY-----------------THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEY 433
             +  +Y                 T   +     +V EY    DL  + ++ P    SE 
Sbjct: 62  DNIVKVYEVLGPSGSDLTEDVGSLTELNS---VYIVQEYMET-DLANVLEQGP---LSEE 114

Query: 434 AARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR-DDGHIMLSDFDLS 480
            AR +  ++L  L+Y+H   V++RDLKP NV +  +D  + + DF L+
Sbjct: 115 HARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLA 162

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 58.3 bits (142), Expect = 3e-09
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 9/103 (8%)

Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV----VGQQL 626
           GT +Y +PE IKG  +  + DWW  G+  +ELL GK PFK   +     ++      QQ 
Sbjct: 168 GTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEE--LDLESLLKRQQK 225

Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           + P     S  + D ++ +L     +RL       EI +HPF 
Sbjct: 226 KLPFIKNVSKNANDFVQSMLKYNINYRLTNYN---EIIKHPFL 265

Length = 267

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 15/147 (10%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH--PFL 393
           +K L  G    VYL         + +K+       SR+K    + E  ILQLL      +
Sbjct: 3   IKLLKGGLTNRVYLLGTKDED--YVLKI-----NPSREKGADREREVAILQLLARKGLPV 55

Query: 394 PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG 453
           P +    E+D +S L+ME+  G  L  + + +      + A      E+L  L  L +L 
Sbjct: 56  PKVLASGESDGWSYLLMEWIEGETLDEVSEEEKEDIAEQLA------ELLAKLHQLPLLV 109

Query: 454 VVYRDLKPENVLVRDDGHIMLSDFDLS 480
           + + DL P N+LV D   + + D++ +
Sbjct: 110 LCHGDLHPGNILVDDGKILGIIDWEYA 136

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 23/161 (14%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD--- 389
           F L++ +G G  G VY      T    A+KVMD               E EI Q ++   
Sbjct: 8   FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD----------VTGDEEEEIKQEINMLK 57

Query: 390 ----HPFLPTLYTHF------ETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYA 439
               H  + T Y  F        D    LVME+C  G +  L +   G    E    +  
Sbjct: 58  KYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYIC 117

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            E+L  L +LH   V++RD+K +NVL+ ++  + L DF +S
Sbjct: 118 REILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVS 158

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 44/152 (28%), Positives = 61/152 (40%), Gaps = 16/152 (10%)

Query: 337 KRLGCGDIGSVYLSELSS---TRCYFAMKVMDKASLASRKKLTRAQT----EREILQLLD 389
           K+LG G  G V   E S+        A+K +         KL+        E  I+  LD
Sbjct: 1   KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCL------KSDKLSDIMDDFLKEAAIMHSLD 54

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
           H  L  LY    T     +V E  P G L   LR+   G HF       YA ++   + Y
Sbjct: 55  HENLIRLYGVVLTHPLM-MVTELAPLGSLLDRLRKDALG-HFLISTLCDYAVQIANGMRY 112

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           L     ++RDL   N+L+  D  + + DF L 
Sbjct: 113 LESKRFIHRDLAARNILLASDDKVKIGDFGLM 144

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 59.3 bits (143), Expect = 3e-09
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 10/158 (6%)

Query: 354 STRCY-FAMKVMDK-ASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME 411
           +TR      KV+ K   L   ++   A++E   L   DH  +   +  F++D    L+ME
Sbjct: 86  ATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIME 145

Query: 412 YCPGGDLHT-----LRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV 466
           Y  GGDL+      L++  P   F EY       +++LAL+ +H   +++RDLK  N+ +
Sbjct: 146 YGSGGDLNKQIKQRLKEHLP---FQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFL 202

Query: 467 RDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGP 504
              G I L DF  S + + S +L   SS    P    P
Sbjct: 203 MPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAP 240

Length = 478

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 21/170 (12%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREI 384
           +S  R L+ LG G  G VY  EL       +    A+K + +   A  K     + E E+
Sbjct: 4   LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKEN--AEPKVQQEFRQEAEL 61

Query: 385 LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQP------------GKHFS 431
           +  L HP +  L      ++ +C++ EY   GDLH  L +  P             K   
Sbjct: 62  MSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSL 121

Query: 432 EYAARFY-AAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           + +   + A ++   +EYL     V+RDL   N LV +   + +SDF LS
Sbjct: 122 DCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLS 171

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 57.7 bits (139), Expect = 4e-09
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +++FR+ K++G G    VY +         A+K +    L   K       E ++L+ L+
Sbjct: 1   LANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLN 60

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL-----HTLRQRQPGKHFSEYAARFYAAEVLL 444
           HP +   Y  F  D    +V+E    GDL     H  +Q+   +   E     Y  ++  
Sbjct: 61  HPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQK---RLIPEKTVWKYFVQLCS 117

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
           ALE++H   V++RD+KP NV +   G + L D  L
Sbjct: 118 ALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGL 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 58.1 bits (140), Expect = 5e-09
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L+ +G G  G+VY +         A+K M  +   S +K      E   LQ L HP 
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
                  +  +  + LVMEYC G     L   +      E AA  + A  L  L YLH  
Sbjct: 77  TIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGA--LQGLAYLHSH 134

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDF 477
            +++RD+K  N+L+ + G + L DF
Sbjct: 135 NMIHRDVKAGNILLSEPGLVKLGDF 159

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 57.1 bits (138), Expect = 6e-09
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 6/146 (4%)

Query: 335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLP 394
            LK LG G  G V+L +        A+K++ + +++    +  A    +++  L HP L 
Sbjct: 8   FLKELGSGQFGVVHLGKWRGKI-DVAIKMIREGAMSEDDFIEEA----KVMMKLSHPNLV 62

Query: 395 TLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGV 454
            LY      R   +V EY   G L    + + GK  +E+      ++V  A+EYL   G 
Sbjct: 63  QLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDM-CSDVCEAMEYLESNGF 121

Query: 455 VYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++RDL   N LV +D  + +SDF L+
Sbjct: 122 IHRDLAARNCLVGEDNVVKVSDFGLA 147

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 38/99 (38%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKG--SG-NRATLFNVVGQQLRFPDS 631
           Y APE+        A DWW+ G  L ELL GKT  +   SG N  T        L  P+ 
Sbjct: 148 YCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGINTHT-------TLNIPE- 199

Query: 632 PATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFF 669
              S  +R L++ LL   P  RLG    G  +IK HPFF
Sbjct: 200 -WVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF 237

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 56.8 bits (138), Expect = 8e-09
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
           D+P    LY    T +   L+M+Y   GDL  L +++     SE   +    +++ AL  
Sbjct: 67  DNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLKKE--GKLSEAEVKKIIRQLVEALND 124

Query: 449 LHMLGVVYRDLKPENVL-VRDDGHIMLSDFDLS 480
           LH   +++ D+K ENVL  R    I L D+ L 
Sbjct: 125 LHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLC 157

Length = 267

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMK--VMDKAS-LASRKKLTRAQTEREILQLLDHPFLPT 395
           LG G  G+VY   L++     A+K   +D ++ LA+ K+  + Q E ++L+ L H  +  
Sbjct: 8   LGKGAYGTVYCG-LTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQ 66

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
                  D    + ME+ PGG + ++  R       E     Y  ++L  + YLH   VV
Sbjct: 67  YLGTCLDDNTISIFMEFVPGGSISSILNRFGP--LPEPVFCKYTKQILDGVAYLHNNCVV 124

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLSLR-CAVSPTLIKTSSLDS 497
           +RD+K  NV++  +G I L DF  + R   V      ++ L S
Sbjct: 125 HRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKS 167

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           S  GT  +++PE+I GEG+G   D W+ G  + E+L  K P+      A +F +  Q   
Sbjct: 166 SVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTN 225

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
                  S  +R+ +R   V+  + R      A E+ +H F 
Sbjct: 226 PQLPSHVSPDARNFLRRTFVENAKKR----PSAEELLRHFFV 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 6/150 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQLLDH 390
           F+ ++++G G  G VY +    T    A+K   K  L +  +   +   REI  L+ L+H
Sbjct: 2   FQKVEKIGEGTYGVVYKARNKLTGEVVALK---KIRLDTETEGVPSTAIREISLLKELNH 58

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P +  L     T+    LV E+    DL       P         + Y  ++L  L + H
Sbjct: 59  PNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCH 117

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              V++RDLKP+N+L+  +G I L+DF L+
Sbjct: 118 SHRVLHRDLKPQNLLINTEGAIKLADFGLA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 7/110 (6%)

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           T   + S  GT  ++APE+I+GE +G A D W+ G  + E+  GK P+   GN       
Sbjct: 156 TGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYK 215

Query: 622 VGQQLRFPDSPAT-SYASRDLIRGLLVKEPQHRLGVKRG-ATEIKQHPFF 669
           +G     P+ P   S  ++D +R  L ++P+     KR  A E+ QHPF 
Sbjct: 216 IGSSGEPPEIPEHLSEEAKDFLRKCLRRDPK-----KRPTADELLQHPFL 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 18/153 (11%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKA--SLASRKKLTRAQTERE------I 384
           +++L ++G G    V  ++   T  Y+A+K M K   SL     L   Q  R       I
Sbjct: 1   YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNI 60

Query: 385 LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 444
           L+L++  F         T R + LV E         ++ R+  +   E   + Y  ++L 
Sbjct: 61  LRLIEVLFDRK------TGRLA-LVFELMDMNLYELIKGRK--RPLPEKRVKSYMYQLLK 111

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
           +L+++H  G+ +RD+KPEN+L++DD  + L+DF
Sbjct: 112 SLDHMHRNGIFHRDIKPENILIKDD-ILKLADF 143

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 17/158 (10%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKV--MDKA----SLASRKKLTRAQTEREI 384
           + F  L R+G G  G VY +  +++    A+K   MD       ++S +++T       +
Sbjct: 7   TEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREIT-------L 59

Query: 385 LQLLDHPFLPTLYTHFETDRFSC--LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEV 442
           L  L HP +  L             LVMEYC   DL +L    P   FSE   +    ++
Sbjct: 60  LLNLRHPNIVELKEVVVGKHLDSIFLVMEYCEQ-DLASLLDNMPTP-FSESQVKCLMLQL 117

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           L  L+YLH   +++RDLK  N+L+ D G + ++DF L+
Sbjct: 118 LRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLA 155

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 21/165 (12%)

Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKK---LTRAQTEREIL 385
            +S +  L ++G G  G V+ +    T+   A+K   K  + + K+   +T A  E +IL
Sbjct: 10  EVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALK---KVLMENEKEGFPIT-ALREIKIL 65

Query: 386 QLLDHP----------FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAA 435
           QLL H              T Y  ++   +  LV E+C   DL  L        F+    
Sbjct: 66  QLLKHENVVNLIEICRTKATPYNRYKGSFY--LVFEFCEH-DLAGLLS-NKNVKFTLSEI 121

Query: 436 RFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +     +L  L Y+H   +++RD+K  N+L+  DG + L+DF L+
Sbjct: 122 KKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLA 166

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 27/169 (15%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS----LASRKKLTRAQTERE--I 384
           S ++ ++ +G G  G V  +  + +    A+K +  A     LA R       T RE  I
Sbjct: 5   SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKR-------TLRELKI 57

Query: 385 LQLLDHPFLPTLYTHFET------DRFSCLVMEYCPGGDLH-TLRQRQPGKHFSEYAARF 437
           L+   H  +  +            D +  +VM+     DLH  +   QP    +E   R+
Sbjct: 58  LRHFKHDNIIAIRDILRPPGADFKDVY--VVMDLM-ESDLHHIIHSDQP---LTEEHIRY 111

Query: 438 YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS 486
           +  ++L  L+Y+H   V++RDLKP N+LV +D  + + DF ++ R   S
Sbjct: 112 FLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMA-RGLSS 159

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 54.6 bits (131), Expect = 5e-08
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 378 AQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARF 437
           A  E  +L+ L H  + TL+    T+R   LV EY        L     G   S +  + 
Sbjct: 50  AIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLDSDLKQYLDN--CGNLMSMHNVKI 107

Query: 438 YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
           +  ++L  L Y H   +++RDLKP+N+L+ + G + L+DF L+ R    PT  KT S
Sbjct: 108 FMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLA-RAKSVPT--KTYS 161

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 49/154 (31%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVM------DKASLASRKKLTRAQTEREILQLLDHPF 392
           LG G  G VY +   ST+   A+K +          L     L      R I+Q L    
Sbjct: 16  LGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLG--- 72

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGK-HFSEYAARFYAAEVLLALEYLHM 451
                +  E   F  + ME  PGG L  L + + G    +E    FY  ++L  L+YLH 
Sbjct: 73  -----SDSENGFFK-IFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHD 126

Query: 452 LGVVYRDLKPENVLVRD-DGHIMLSDFDLSLRCA 484
             +V+RD+K +NVLV    G + +SDF  S R A
Sbjct: 127 NQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLA 160

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 54.6 bits (131), Expect = 6e-08
 Identities = 74/338 (21%), Positives = 123/338 (36%), Gaps = 97/338 (28%)

Query: 338 RLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD--HPFLPT 395
           ++G G  G V ++ + S+    A+K MD      RK+  R     E++ + D  H  +  
Sbjct: 27  KIGEGSTGIVCIATVKSSGKLVAVKKMDL-----RKQQRRELLFNEVVIMRDYQHENVVE 81

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           +Y  +       +VME+  GG L  +         +E         VL AL  LH  GV+
Sbjct: 82  MYNSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLKALSVLHAQGVI 138

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACI 515
           +RD+K +++L+  DG + LSDF                              FC Q +  
Sbjct: 139 HRDIKSDSILLTHDGRVKLSDF-----------------------------GFCAQVS-- 167

Query: 516 EPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY 575
                                 K+  + +S +G P    PEL++                
Sbjct: 168 ----------------------KEVPRRKSLVGTPYWMAPELISRLP------------- 192

Query: 576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATS 635
                     +G  VD W+ GI + E++ G+ P+    N   L  +   +   P      
Sbjct: 193 ----------YGPEVDIWSLGIMVIEMVDGEPPYF---NEPPLKAMKMIRDNLPPKLKNL 239

Query: 636 YASRDLIRG----LLVKEPQHRLGVKRGATEIKQHPFF 669
           +     ++G    LLV++P  R      A E+ +HPF 
Sbjct: 240 HKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 12/160 (7%)

Query: 327 ILGMSHFRLLKRLGCGDIGSVY----LSELSSTRCYFAMKVM-DKASLASRKKLTRAQTE 381
           IL  +    +K LG G  G+VY    + E    +   A+KV+ ++ S  + K++     E
Sbjct: 3   ILKETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILD---E 59

Query: 382 REILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ-RQPGKHFSEYAARFYAA 440
             ++  +DHP +  L     + +   L+ +  P G L  L   R    +        +  
Sbjct: 60  AYVMASVDHPHVVRLLGICLSSQV-QLITQLMPLGCL--LDYVRNHKDNIGSQYLLNWCV 116

Query: 441 EVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++   + YL    +V+RDL   NVLV+   H+ ++DF L+
Sbjct: 117 QIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLA 156

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 54.4 bits (131), Expect = 7e-08
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 7/105 (6%)

Query: 379 QTEREI--LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQP-GKHFSEYAA 435
           +T RE+  L+ L H  + +L   F +       +    G DLH L   +P  K F +Y  
Sbjct: 55  RTYRELKLLKHLRHENIISLSDIFISPLEDIYFVTELLGTDLHRLLTSRPLEKQFIQY-- 112

Query: 436 RFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             +  ++L  L+Y+H  GVV+RDLKP N+L+ ++  + + DF L+
Sbjct: 113 --FLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLA 155

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 14/161 (8%)

Query: 333 FRLLKRLGCGDIGSVYLSELS---STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
            +L K LG G+ GSV   +LS    ++   A+K M K  + +  ++    +E   ++  D
Sbjct: 1   LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTM-KLDIHTYSEIEEFLSEAACMKDFD 59

Query: 390 HPFLPTL----YTHFETDRFS--CLVMEYCPGGDLHT--LRQRQPG--KHFSEYAARFYA 439
           HP +  L    +      +     +++ +   GDLH+  L  R  G  +         + 
Sbjct: 60  HPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFM 119

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            ++ L +EYL     ++RDL   N ++R+D  + ++DF LS
Sbjct: 120 VDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLS 160

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 53.8 bits (130), Expect = 9e-08
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           T ++  +FVGT  ++APE+IK  G+    D W+ GI   EL  G+ P         LF +
Sbjct: 151 TMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLI 210

Query: 622 VGQQLRFPDS---PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
                  P S      S   +D +   L K+P+ R      A E+ +H F
Sbjct: 211 PK---NNPPSLEGNKFSKPFKDFVSLCLNKDPKERP----SAKELLKHKF 253

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 38/132 (28%), Positives = 51/132 (38%), Gaps = 39/132 (29%)

Query: 572 THE-----YLAPEIIKGEGH-GSAVDWWTFG-IFLHELLYGKTPFKGSGNRATL---FNV 621
           THE     Y APEI+ G  H  +AVD W+ G IF  E++ GK  F G      L   F +
Sbjct: 156 THEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFA-EMITGKPLFPGDSEIDQLFKIFQI 214

Query: 622 VGQ---------------QLRFPDSPATSYAS---------RDLIRGLLVKEPQHRLGVK 657
           +G                +  FP  P                DL+  +L   P  R+   
Sbjct: 215 LGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRI--- 271

Query: 658 RGATEIKQHPFF 669
             A E  +HP+F
Sbjct: 272 -SAKEALKHPYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 9/105 (8%)

Query: 568 SFVGTHEYLAPEII-KG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNVVGQ 624
           +F GT +Y+APE+I KG  G+G+  D W+ G  + E+  GK PF   G  +A +F  VG 
Sbjct: 168 TFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFK-VGM 226

Query: 625 QLRFPDSP-ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
               P+ P + S  +++ I      +P  R      A ++ Q PF
Sbjct: 227 FKIHPEIPESLSAEAKNFILRCFEPDPDKR----ASAHDLLQDPF 267

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 15/154 (9%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G+V  ++  S    FA+KV+D   ++   K  RAQ E  +  LL+  F   +  
Sbjct: 40  LGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKN-RAQAE--VCCLLNCDFFSIVKC 96

Query: 399 HF----------ETDRFSCLVMEYCPGGDL-HTLRQR-QPGKHFSEYAARFYAAEVLLAL 446
           H           E      LV++Y   GDL   ++ R +  + F E+ A     +VLLA+
Sbjct: 97  HEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAV 156

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            ++H   +++RD+K  N+L+  +G + L DF  S
Sbjct: 157 HHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFS 190

Length = 496

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 4/150 (2%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             F L ++LG G  G V+   L   R   A+K++    L    K    Q E + L+ L H
Sbjct: 6   EEFTLERKLGSGYFGEVW-EGLWKNRVRVAIKILKSDDLL---KQQDFQKEVQALKRLRH 61

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
             L +L+          ++ E    G L    +   G+     +    A +V   + YL 
Sbjct: 62  KHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLE 121

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
               ++RDL   N+LV +D    ++DF L+
Sbjct: 122 EQNSIHRDLAARNILVGEDLVCKVADFGLA 151

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 2/152 (1%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +++F++ K++G G    VY +     R   A+K +    +   K       E ++L+ L+
Sbjct: 1   LANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLN 60

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ--RQPGKHFSEYAARFYAAEVLLALE 447
           HP +      F  D    +V+E    GDL  + +  ++  +   E     Y  ++  A+E
Sbjct: 61  HPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVE 120

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
           ++H   V++RD+KP NV +   G + L D  L
Sbjct: 121 HMHSRRVMHRDIKPANVFITATGVVKLGDLGL 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 23/173 (13%)

Query: 331 SHFRLLKRLGCGDIGSVYLSE-----LSSTRCYFAMKVMDKASLASRKKL-------TRA 378
                +++LG G  G V+L E       S + +      D   L + K L        R 
Sbjct: 5   QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNARE 64

Query: 379 QTEREILQL--LDHPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAA 435
              +E+  L  L  P +  L      D   C++MEY   GDL   L++           +
Sbjct: 65  DFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNS 124

Query: 436 RFYAAEVLL--------ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +  +   LL         + YL  L  V+RDL   N LV  +  I ++DF +S
Sbjct: 125 KSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMS 177

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           S VGT  ++APE+I+  G  +A D W+ G  + ELL G  P+      A LF +V  Q  
Sbjct: 158 SVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIV--QDD 215

Query: 628 FPDSPAT-SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            P  P   S   +D +     K+P  R      A ++ +HP+ 
Sbjct: 216 HPPLPEGISPELKDFLMQCFQKDPNLRP----TAKQLLKHPWI 254

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 14/170 (8%)

Query: 338 RLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD--HPFLPT 395
           ++G G  G V ++    T    A+K MD      RK+  R     E++ + D  H  +  
Sbjct: 29  KIGEGSTGIVCIATEKHTGKQVAVKKMDL-----RKQQRRELLFNEVVIMRDYHHENVVD 83

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
           +Y  +       +VME+  GG L  +         +E         VL AL YLH  GV+
Sbjct: 84  MYNSYLVGDELWVVMEFLEGGALTDIVTHT---RMNEEQIATVCLSVLRALSYLHNQGVI 140

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLSLRCA-VSPTLIKTSSLDSDPSRRGP 504
           +RD+K +++L+  DG I LSDF     CA VS  + K  SL   P    P
Sbjct: 141 HRDIKSDSILLTSDGRIKLSDFGF---CAQVSKEVPKRKSLVGTPYWMAP 187

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 53.7 bits (130), Expect = 2e-07
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 33/169 (19%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS---LASRK------KLTRAQ- 379
           +  + +L++LG G  G V+             K +D+ +   +A +K        T AQ 
Sbjct: 6   LRKYEILQKLGKGAYGIVW-------------KAIDRRTKEVVALKKIFDAFRNATDAQR 52

Query: 380 TEREIL---QLLDHPFLPTLYTHF--ETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYA 434
           T REI+   +L DHP +  L      E D+   LV EY    DLH + +        +  
Sbjct: 53  TFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEYMET-DLHAVIRA---NILEDVH 108

Query: 435 ARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
            R+   ++L AL+Y+H   V++RDLKP N+L+  D  + L+DF L+ R 
Sbjct: 109 KRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLA-RS 156

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 5/150 (3%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQLLDH 390
           +  ++++G G  G VY      T    AMK   K  L S ++   +   REI  L+ L H
Sbjct: 2   YTKIEKIGEGTYGVVYKGRNKKTGQIVAMK---KIRLESEEEGVPSTAIREISLLKELQH 58

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P +  L      +    L+ E+        L     G++      + Y  ++L  + + H
Sbjct: 59  PNIVCLQDVLMQESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCH 118

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              V++RDLKP+N+L+ + G I L+DF L+
Sbjct: 119 SRRVLHRDLKPQNLLIDNKGVIKLADFGLA 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPF---KGSGNRATLFNVVGQQ 625
            +GT  ++APE+++GE +G + D W+ G  + E+   K P+   K S + A +F  +   
Sbjct: 168 LLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFK-IASA 226

Query: 626 LRFPDSPAT-SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
              P  P   S   RD+    L  +P+ R   +    E+ +HP F
Sbjct: 227 TTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSR----ELLKHPVF 267

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 6/149 (4%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
               LK LG G  G V   +    +   A+K++ + S++  + +  A+    ++  L H 
Sbjct: 5   DLTFLKELGTGQFGVVKYGKWRG-QYDVAIKMIKEGSMSEDEFIEEAK----VMMKLSHE 59

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
            L  LY      R   +V EY   G L     R+ GK F          +V   + YL  
Sbjct: 60  KLVQLYGVCTKQRPIYIVTEYMSNGCLLNY-LREHGKRFQPSQLLEMCKDVCEGMAYLES 118

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              ++RDL   N LV D G + +SDF LS
Sbjct: 119 KQFIHRDLAARNCLVDDQGCVKVSDFGLS 147

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 4/148 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           +  L++LG G   +VY  +        A+KV+ +         T A  E  +L+ L H  
Sbjct: 7   YEKLEKLGEGSYATVYKGKSKVNGKLVALKVI-RLQEEEGTPFT-AIREASLLKGLKHAN 64

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  L+    T     LV EY    DL     + PG    E   + +  ++L  L Y+H  
Sbjct: 65  IVLLHDIIHTKETLTLVFEYV-HTDLCQYMDKHPGGLHPE-NVKLFLFQLLRGLSYIHQR 122

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            +++RDLKP+N+L+ D G + L+DF L+
Sbjct: 123 YILHRDLKPQNLLISDTGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 16/155 (10%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQLLDH 390
           F+ L++LG G   +VY     +T    A+K +   +    ++ T +   REI  ++ L H
Sbjct: 2   FKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDA----EEGTPSTAIREISLMKELKH 57

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGG-----DLHTLRQRQPGKHFSEYAARFYAAEVLLA 445
             +  L+    T+    LV EY         D H +R             + +  ++L  
Sbjct: 58  ENIVRLHDVIHTENKLMLVFEYMDKDLKKYMDTHGVRGALDPN-----TVKSFTYQLLKG 112

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           + + H   V++RDLKP+N+L+   G + L+DF L+
Sbjct: 113 IAFCHENRVLHRDLKPQNLLINKRGELKLADFGLA 147

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 7/113 (6%)

Query: 378 AQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQP--GKHFSEYAA 435
           A  E  +L+ L H  + TL+    TD+   LV EY        L+Q     G   S +  
Sbjct: 51  AIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLD----KDLKQYMDDCGNIMSMHNV 106

Query: 436 RFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT 488
           + +  ++L  L Y H   V++RDLKP+N+L+ + G + L+DF L+ R    PT
Sbjct: 107 KIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLA-RAKSVPT 158

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 45/155 (29%), Positives = 66/155 (42%), Gaps = 10/155 (6%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           +     +L   +G G+ G V L +    +   A+K +   S A++  L  A      +  
Sbjct: 3   INSKELKLGATIGKGEFGDVMLGDYRGQKV--AVKCLKDDSTAAQAFLAEASV----MTT 56

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARF-YAAEVLLA 445
           L HP L  L           +V EY   G L   LR R  G+     A +  +A +V   
Sbjct: 57  LRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSR--GRAVITLAQQLGFALDVCEG 114

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +EYL     V+RDL   NVLV +D    +SDF L+
Sbjct: 115 MEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLA 149

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 20/148 (13%)

Query: 357 CYFAMKVMDKASLASRKKLTRAQT--------------EREILQLLDHPFLPTLYTHFET 402
           CY A  V    +L + K++T  +               E  ++  L+HP +  +      
Sbjct: 16  CYQARDVK-TGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCE 74

Query: 403 DRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKP 461
           D    L +E+  GG + H L +      F E     Y  ++L  L YLH   +++RD+K 
Sbjct: 75  DSHFNLFVEWMAGGSVSHLLSKYGA---FKEAVIINYTEQLLRGLSYLHENQIIHRDVKG 131

Query: 462 ENVLVRDDGHIM-LSDFDLSLRCAVSPT 488
            N+L+   G  + ++DF  + R A   T
Sbjct: 132 ANLLIDSTGQRLRIADFGAAARLAAKGT 159

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 12/156 (7%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHP 391
           + +++ +G G  G VY           A+K++D  S    +     + E  ILQ L +HP
Sbjct: 24  WEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEE----IEAEYNILQSLPNHP 79

Query: 392 FLPTLYTHF-ETDRFS----CLVMEYCPGGDLHTLRQ--RQPGKHFSEYAARFYAAEVLL 444
            +   Y  F + D+       LV+E C GG +  L +     G+   E    +     LL
Sbjct: 80  NVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALL 139

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            L++LH   +++RD+K  N+L+  +G + L DF +S
Sbjct: 140 GLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVS 175

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQLLDHPFL 393
           L+++G G  G+V+ ++   T    A+K   +  L    +   +   REI  L+ L H  +
Sbjct: 5   LEKIGEGTYGTVFKAKNRETHEIVALK---RVRLDDDDEGVPSSALREICLLKELKHKNI 61

Query: 394 PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG 453
             LY    +D+   LV EYC   DL        G        + +  ++L  L + H   
Sbjct: 62  VRLYDVLHSDKKLTLVFEYC-DQDLKKYFDSCNGD-IDPEIVKSFMFQLLKGLAFCHSHN 119

Query: 454 VVYRDLKPENVLVRDDGHIMLSDFDLS 480
           V++RDLKP+N+L+  +G + L+DF L+
Sbjct: 120 VLHRDLKPQNLLINKNGELKLADFGLA 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR 467
           LVM Y     + T  Q+  G   SE   ++   ++L  L+Y+H  G+++RDLKP N+ V 
Sbjct: 97  LVMPY-----MQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVN 151

Query: 468 DDGHIMLSDFDLS 480
           +D  + + DF L+
Sbjct: 152 EDCELKILDFGLA 164

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           F  L  LG G+ G V       +    A K++  +   A R ++ R   E ++L   + P
Sbjct: 3   FEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIR---ELKVLHECNSP 59

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH- 450
           ++   Y  F +D    + ME+  GG L     ++ G+       +   A VL  L YL  
Sbjct: 60  YIVGFYGAFYSDGEISICMEHMDGGSL-DQVLKKAGRIPENILGKISIA-VLRGLTYLRE 117

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +++RD+KP N+LV   G I L DF +S
Sbjct: 118 KHKIMHRDVKPSNILVNSRGEIKLCDFGVS 147

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 12/147 (8%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVM-DKASLASRKKLTRAQTEREILQLLDHPFLP 394
           + R+G G  G+VY      T   +A+KV+        R+++ R   E EIL+ ++HP + 
Sbjct: 79  VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICR---EIEILRDVNHPNVV 135

Query: 395 TLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHF-SEYAARFYAAEVLLALEYLHMLG 453
             +  F+ +    +++E+  GG L        G H   E      A ++L  + YLH   
Sbjct: 136 KCHDMFDHNGEIQVLLEFMDGGSLE-------GTHIADEQFLADVARQILSGIAYLHRRH 188

Query: 454 VVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +V+RD+KP N+L+    ++ ++DF +S
Sbjct: 189 IVHRDIKPSNLLINSAKNVKIADFGVS 215

Length = 353

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 568 SFVGTHEYLAPEIIK-GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           +FVGT  ++APE+++   G+    D W+FGI   EL  G  P+        L   +  Q 
Sbjct: 165 TFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTL--QN 222

Query: 627 RFP------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             P      D    S + R +I   L K+P  R      A E+ +H FF
Sbjct: 223 DPPSLETGADYKKYSKSFRKMISLCLQKDPSKR----PTAEELLKHKFF 267

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 21/160 (13%)

Query: 339 LGCGDIGSVYLSELS-----STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFL 393
           LG G  G V+L+E         +   A+K + +AS ++R+   R   E E+L +L H  +
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQR---EAELLTVLQHQHI 69

Query: 394 PTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHF---SEYAA---------RFYAA 440
              Y      R   +V EY   GDL+  LR   P        E  A            A+
Sbjct: 70  VRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIAS 129

Query: 441 EVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++   + YL  L  V+RDL   N LV     + + DF +S
Sbjct: 130 QIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMS 169

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL-LDHPFLPTLY 397
           +G G  G VY      T    A+K M +       K  R   + +++    D P++   Y
Sbjct: 23  IGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENK--RILMDLDVVLKSHDCPYIVKCY 80

Query: 398 THF--ETDRFSCL-VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL---HM 451
            +F  ++D F C+ +M  C    L  L +R  G    E         ++ AL YL   H 
Sbjct: 81  GYFITDSDVFICMELMSTC----LDKLLKRIQGP-IPEDILGKMTVAIVKALHYLKEKH- 134

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
            GV++RD+KP N+L+   G++ L DF +S R
Sbjct: 135 -GVIHRDVKPSNILLDASGNVKLCDFGISGR 164

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 38/103 (36%)

Query: 566 SMSFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
             + VGT  Y+APE++ G+G+     D W+ G+ L+EL                      
Sbjct: 150 LKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL---------------------P 188

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHP 667
           +L            +DLIR +L K+P+ R   K    EI +H 
Sbjct: 189 EL------------KDLIRKMLQKDPEKRPSAK----EILEHL 215

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 50.7 bits (121), Expect = 8e-07
 Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF- 628
           VGT  YL+PEI +   + +  D W+ G  L+EL   K PF+G+     +  +   Q  F 
Sbjct: 163 VGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKIC--QGYFA 220

Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           P SP  S   R LI  L    P+ R  +    T I + PF 
Sbjct: 221 PISPNFSRDLRSLISQLFKVSPRDRPSI----TSILKRPFL 257

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 4/147 (2%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPT 395
           L  LG G+ GSVY      T    AMK + +  L    K  +   E +IL     P++  
Sbjct: 6   LDELGKGNYGSVYKVLHRPTGVTMAMKEI-RLEL-DESKFNQIIMELDILHKAVSPYIVD 63

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLR-QRQPGKHFSEYAARFYAAEVLLALEYL-HMLG 453
            Y  F  +    + MEY   G L  L       +   E   R     V+  L++L     
Sbjct: 64  FYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHN 123

Query: 454 VVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +++RD+KP NVLV  +G + L DF +S
Sbjct: 124 IIHRDVKPTNVLVNGNGQVKLCDFGVS 150

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 332 HFRLLKRLGCGDIGSVYLSELS----STRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           H + +++LG G+ GSV L        +T    A+K   K   ++ + L   + E EIL+ 
Sbjct: 5   HLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVK---KLQHSTAEHLRDFEREIEILKS 61

Query: 388 LDHPFLPTLY--THFETDRFSC-LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 444
           L H  +   Y    +   R +  LVMEY P G L    Q+   +         YA+++  
Sbjct: 62  LQHDNI-VKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRER-LDHRKLLLYASQICK 119

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            +EYL     V+RDL   N+LV  +  + + DF L+
Sbjct: 120 GMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLT 155

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
           +GT  Y+APE+ KG  +    D W+ G  L+E+     PF+   +   L   V Q+ ++P
Sbjct: 162 IGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEAR-SMQDLRYKV-QRGKYP 219

Query: 630 DSPATSYASRDL---IRGLLVKEPQHRLGVKRGATEIKQHP 667
             P     S+DL   IR +L  +P+ R        +I   P
Sbjct: 220 PIPPIY--SQDLQNFIRSMLQVKPKLRPNC----DKILASP 254

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 11/113 (9%)

Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA-TLFNVVGQQ 625
            +FVGT  Y+APE I+G  +    D W+ G+ L EL  G+ P+    +    +F ++   
Sbjct: 157 KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYI 216

Query: 626 L-----RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN 673
           +     R P    +    +D +   L+K+P+ R   K    E+ +HPF +   
Sbjct: 217 VNEPPPRLPSGKFSPDF-QDFVNLCLIKDPRERPSYK----ELLEHPFIKKYE 264

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPF-------KGSGNRATLFN 620
           +FVGT  Y++PE I+G  +    D W+ GI + EL  GK PF        G  +   + +
Sbjct: 161 TFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILD 220

Query: 621 VVGQ--QLRFPDSPATSYAS--RDLIRGLLVKEPQHR 653
           ++ Q  Q   P  P++ +    RD +   L+K+P  R
Sbjct: 221 LLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTER 257

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--Q 625
           S  GT  +++PE+I GEG+G   D W+    + E+L  K P+      A +F +  Q  +
Sbjct: 168 SVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQPTK 227

Query: 626 LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
              PD    S A RD ++ + V+E +        A  + +HPF
Sbjct: 228 PMLPDG--VSDACRDFLKQIFVEEKRRPT-----AEFLLRHPF 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 378 AQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ--RQPGKHFSEYAA 435
           A  E  +L+ L H  + TL+    T++   LV EY        L+Q     G   + +  
Sbjct: 51  AIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD----KDLKQYLDDCGNSINMHNV 106

Query: 436 RFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
           + +  ++L  L Y H   V++RDLKP+N+L+ + G + L+DF L+ R    PT  KT S
Sbjct: 107 KLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLA-RAKSIPT--KTYS 162

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 17/166 (10%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLT-RAQTEREILQLL-D 389
            + L+K LG G  G V  +  + T     + +    ++ S+K L  RA  E ++L+    
Sbjct: 1   RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRG 60

Query: 390 HPFLPTLYTH--FETDRFSCL-----VMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAE 441
           H  +  LY         F+ L     +ME     DLH  +R  QP    ++   + +  +
Sbjct: 61  HKNITCLYDMDIVFPGNFNELYLYEELMEA----DLHQIIRSGQP---LTDAHFQSFIYQ 113

Query: 442 VLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP 487
           +L  L+Y+H   V++RDLKP N+LV  D  + + DF L+   + +P
Sbjct: 114 ILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSENP 159

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 9/116 (7%)

Query: 559 AEPTAARSM--SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTP-FKGSGNR 615
           A+ T  +S   S VGT  ++APE+IK + +G  VD W+ GI   E+  G+ P  +    R
Sbjct: 164 AQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLR 223

Query: 616 ATLFNVVGQQL-RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
           A LF +  + +    +    S   +D +   LVK+P+ R      A E+ QHPF +
Sbjct: 224 A-LFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRP----SAEELLQHPFLK 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 50.8 bits (121), Expect = 2e-06
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV-GQQL 626
           SF GT  YLAPE+ + + +    D W+ G+ L+ELL    PFKG   R  +  V+ G+  
Sbjct: 230 SFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYD 289

Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHR 653
            FP  P +S   + L+  LL K P  R
Sbjct: 290 PFP-CPVSS-GMKALLDPLLSKNPALR 314

Length = 478

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           ++ TAA S+  VGT  Y++PE I   G+    D W+ G  L+E+   ++PF   G++  L
Sbjct: 158 SKTTAAHSL--VGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPF--YGDKMNL 213

Query: 619 FNVVG--QQLRFPDSPATSYAS--RDLIRGLLVKEPQHR 653
           F++    +Q  +P  P   Y+   R+L+   +  +P  R
Sbjct: 214 FSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQR 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 8/151 (5%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           S    +K LG G  G V+L +  +     A+K +++ +++    +  A+    ++  L H
Sbjct: 4   SELTFMKELGSGQFGVVHLGKWRAQ-IKVAIKAINEGAMSEEDFIEEAK----VMMKLSH 58

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P L  LY      +   +V E+   G L + LRQRQ     S+        +V   +EYL
Sbjct: 59  PKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQ--GKLSKDMLLSMCQDVCEGMEYL 116

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                ++RDL   N LV   G + +SDF ++
Sbjct: 117 ERNSFIHRDLAARNCLVSSTGVVKVSDFGMT 147

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 18/166 (10%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI-----LQLLDHPFL 393
           +G G  G+VY +    +  + A+K      + + +      T RE+     L+  DHP +
Sbjct: 8   IGVGAYGTVYKARDPHSGHFVALK---SVRVQTNEDGLPLSTVREVALLKRLEAFDHPNI 64

Query: 394 PTLY---THFETDRFS--CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
             L        TDR +   LV E+    DL T   + P         +    + L  L++
Sbjct: 65  VRLMDVCATSRTDRETKVTLVFEHV-DQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDF 123

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDL----SLRCAVSPTLI 490
           LH   +V+RDLKPEN+LV   G + L+DF L    S + A++P ++
Sbjct: 124 LHANCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQMALTPVVV 169

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 381 EREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAA 440
           E  +L+ L H  + TL+    T +   LV EY    DL        G   S +  R +  
Sbjct: 53  EASLLKDLKHANIVTLHDIIHTKKTLTLVFEYLDT-DLKQYMDDCGGG-LSMHNVRLFLF 110

Query: 441 EVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
           ++L  L Y H   V++RDLKP+N+L+ + G + L+DF L+ R    P+  KT S
Sbjct: 111 QLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLA-RAKSVPS--KTYS 161

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 11/154 (7%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           +R LK++G G  G+V  +    T    A+K + +    S     RA  E  +L+ + H  
Sbjct: 17  YRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRP-FQSELFAKRAYRELRLLKHMKHEN 75

Query: 393 LPTLYTHFETD----RFS--CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
           +  L   F  D    RF    LVM +  G DL  L + +     SE   +F   ++L  L
Sbjct: 76  VIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMKHE---KLSEDRIQFLVYQMLKGL 131

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +Y+H  G+++RDLKP N+ V +D  + + DF L+
Sbjct: 132 KYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLA 165

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 63/267 (23%), Positives = 98/267 (36%), Gaps = 90/267 (33%)

Query: 408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR 467
           +VMEY  GG L  +          E        E L ALE+LH   V++RD+K +NVL+ 
Sbjct: 93  VVMEYLAGGSLTDVVTETC---MDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLG 149

Query: 468 DDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACF 527
            DG + L+DF                              FC Q                
Sbjct: 150 MDGSVKLTDF-----------------------------GFCAQ---------------- 164

Query: 528 IPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHG 587
              I P+++K+ T      +G P    PE+V                         + +G
Sbjct: 165 ---ITPEQSKRSTM-----VGTPYWMAPEVVTR-----------------------KAYG 193

Query: 588 SAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ---QLRFPDSPATSYASRDLIRG 644
             VD W+ GI   E++ G+ P+        L+ +      +L+ P+  +  +  RD +  
Sbjct: 194 PKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIF--RDFLNR 251

Query: 645 LLVKEPQHRLGVKRG-ATEIKQHPFFE 670
            L  + +     KRG A E+ QHPF +
Sbjct: 252 CLEMDVE-----KRGSAKELLQHPFLK 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV-GQQL 626
           +F GT  Y++PE +K +G+ S  D W+ G  L+E+      F+G    + +  +V G   
Sbjct: 164 TFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTP 223

Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             P++ +    S  +++ +L K+P  R      A EI ++PF
Sbjct: 224 SLPETYSRQLNS--IMQSMLNKDPSLRP----SAAEILRNPF 259

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
            S  GT  +++PE+I GEG+G   D W+ G  + E+L  K P+      A +F +  Q  
Sbjct: 167 KSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPT 226

Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
                P  S   RD ++ + V+        +  A E+ +H F
Sbjct: 227 NPVLPPHVSDHCRDFLKRIFVEAKL-----RPSADELLRHTF 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-QL 626
           S VGT  ++APE+I    +G+ VD W+ GI + E++ G+ P+        +  +      
Sbjct: 177 SLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPP 236

Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP 686
           R  DS   S   R  +  +LV+EP  R      A E+ QHPF        ++ + PP   
Sbjct: 237 RVKDSHKVSSVLRGFLDLMLVREPSQR----ATAQELLQHPF--------LKLAGPPSCI 284

Query: 687 RPM 689
            P+
Sbjct: 285 VPL 287

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 10/146 (6%)

Query: 339 LGCGDIGSVY--LSELSSTRCYFAMKVMDKASLAS-RKKLTRAQTEREILQLLDHPFLPT 395
           LG G+ G V   + ++   +   A+KV+   +  S R ++ R   E EI+  LD+P++  
Sbjct: 3   LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMR---EAEIMHQLDNPYIVR 59

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGV 454
           +    E +    LVME   GG L+  L  ++     S      +  +V + ++YL     
Sbjct: 60  MIGVCEAEAL-MLVMEMASGGPLNKFLSGKKDEITVSNVVELMH--QVSMGMKYLEGKNF 116

Query: 455 VYRDLKPENVLVRDDGHIMLSDFDLS 480
           V+RDL   NVL+ +  +  +SDF LS
Sbjct: 117 VHRDLAARNVLLVNQHYAKISDFGLS 142

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 16/158 (10%)

Query: 333 FRLLKRLGCGDIGSVY--LSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-D 389
           + +++ +G G  G V+  L++ + ++   A+K++D       +     + E  IL+ L D
Sbjct: 20  WEIIETIGKGTYGKVFKVLNKKNGSKA--AVKILDPIHDIDEE----IEAEYNILKALSD 73

Query: 390 HPFLPTLY-THFETDRFS----CLVMEYCPGGDLHTLRQ--RQPGKHFSEYAARFYAAEV 442
           HP +   Y  +++ D  +     LV+E C GG +  L +   + G+   E    +   E 
Sbjct: 74  HPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEA 133

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           L+ L++LH+   ++RD+K  N+L+  +G + L DF +S
Sbjct: 134 LMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVS 171

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 22/171 (12%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAM---KVMDKASLASRKKLTRAQT-------- 380
             RL ++LG G  G V+L E      +      +   +  L + K L    T        
Sbjct: 6   QLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFL 65

Query: 381 -EREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFS------- 431
            E +I+  L +P +  L     +D   C++ EY   GDL+  L QR+    F+       
Sbjct: 66  KEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPS 125

Query: 432 -EYAARFY-AAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              A   Y A ++   ++YL  L  V+RDL   N LV +   I ++DF +S
Sbjct: 126 VSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMS 176

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 16/157 (10%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQLLDH-PF 392
           L+++G G  G VY +   +T    A+K   K  L   ++       REI  LQ+L    +
Sbjct: 6   LEKIGEGTYGKVYKARDKNTGKLVALK---KTRLEMDEEGIPPTALREISLLQMLSESIY 62

Query: 393 LPTLYT--HFETDRFSC---LVMEYCPGGDLHT---LRQRQPGKHFSEYAARFYAAEVLL 444
           +  L    H E         LV EY    DL        R PG+       + +  ++L 
Sbjct: 63  IVRLLDVEHVEEKNGKPSLYLVFEYL-DSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLK 121

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIM-LSDFDLS 480
            + + H  GV++RDLKP+N+LV     ++ ++D  L 
Sbjct: 122 GVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLG 158

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           ++VGT  Y++PE +    +    D W+ G  ++EL     PF    N+  L + + ++ +
Sbjct: 169 TYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTAR-NQLQLASKI-KEGK 226

Query: 628 FPDSPATSYASRDL---IRGLLVKEPQHRLGVKRGATEIKQHPF 668
           F   P     S +L   I+ +L  +P  R   +    E+ Q P 
Sbjct: 227 FRRIPY--RYSSELNEVIKSMLNVDPDKRPSTE----ELLQLPL 264

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 12/149 (8%)

Query: 337 KRLGCGDIGSV---YLSELSSTRCYFAMKVM--DKASLASRKKLTRAQTEREILQLLDHP 391
             LG G+ G+V         S +   A+K++  D    A + +L R   E  ++Q LD+P
Sbjct: 1   GELGSGNFGTVKKGMYKMKKSEKT-VAVKILKNDNNDPALKDELLR---EANVMQQLDNP 56

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
           ++  +    E + +  LVME    G L+   Q+   KH +E        +V + ++YL  
Sbjct: 57  YIVRMIGICEAESW-MLVMELAELGPLNKFLQKN--KHVTEKNITELVHQVSMGMKYLEE 113

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              V+RDL   NVL+    +  +SDF LS
Sbjct: 114 TNFVHRDLAARNVLLVTQHYAKISDFGLS 142

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 425 QPGKHFSEYAARFYAAEVLLALEYLH-MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             G    E      A  ++ ALEYLH  L V++RD+KP NVL+  +G + L DF +S
Sbjct: 95  DKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGIS 151

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 48.6 bits (115), Expect = 5e-06
 Identities = 72/338 (21%), Positives = 123/338 (36%), Gaps = 91/338 (26%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPT 395
            +++G G  G+VY +   +T    A+K M+   L  + K      E  +++   +P +  
Sbjct: 24  FEKIGQGASGTVYTAIDIATGQEVAIKQMN---LQQQPKKELIINEILVMRENKNPNIVN 80

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
               +       +VMEY  GG L  +          E        E L AL++LH   V+
Sbjct: 81  YLDSYLVGDELWVVMEYLAGGSLTDVVTETC---MDEGQIAAVCRECLQALDFLHSNQVI 137

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACI 515
           +RD+K +N+L+  DG + L+DF                              FC Q    
Sbjct: 138 HRDIKSDNILLGMDGSVKLTDF-----------------------------GFCAQ---- 164

Query: 516 EPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY 575
                          I P+++K+ T      +G P    PE+V                 
Sbjct: 165 ---------------ITPEQSKRSTM-----VGTPYWMAPEVVTR--------------- 189

Query: 576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ---QLRFPDSP 632
                   + +G  VD W+ GI   E++ G+ P+        L+ +      +L+ P+  
Sbjct: 190 --------KAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERL 241

Query: 633 ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
           +  +  RD +   L  +   R      A E+ QHPF +
Sbjct: 242 SAVF--RDFLNRCLEMDVDRR----GSAKELLQHPFLK 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 48.1 bits (114), Expect = 6e-06
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 4/142 (2%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G+ G V+   L   +   A+K   K  L    K+ +  +E  IL+  DHP +  L  
Sbjct: 3   LGKGNFGEVFKGTLKD-KTPVAVKTC-KEDLPQELKI-KFLSEARILKQYDHPNIVKLIG 59

Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRD 458
                +   +VME  PGGD  +  +++  +  ++   +F A +    + YL     ++RD
Sbjct: 60  VCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKF-ALDAAAGMAYLESKNCIHRD 118

Query: 459 LKPENVLVRDDGHIMLSDFDLS 480
           L   N LV ++  + +SDF +S
Sbjct: 119 LAARNCLVGENNVLKISDFGMS 140

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 49.5 bits (118), Expect = 6e-06
 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 360 AMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET-DRFSCLVMEYCPGGDL 418
           A+K++   +     +  R + E  +   L HP +  L    E        V EY PG   
Sbjct: 7   AIKLLRTDAPEEEHQRARFRRETALCARLYHPNIVALLDSGEAPPGLLFAVFEYVPG--- 63

Query: 419 HTLRQR--QPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV--RDDG-HIM 473
            TLR+     G   +    R    +VL AL   H  G+V+RDLKP+N++V       H  
Sbjct: 64  RTLREVLAADGALPAGETGRL-MLQVLDALACAHNQGIVHRDLKPQNIMVSQTGVRPHAK 122

Query: 474 LSDFDLS 480
           + DF + 
Sbjct: 123 VLDFGIG 129

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 6/146 (4%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLT-RAQTEREILQLLDHPFLP 394
           L++LG G   +VY           A+KV+   S+ + + +   A  E  +L+ L H  + 
Sbjct: 10  LEKLGEGSYATVYKGISRINGQLVALKVI---SMKTEEGVPFTAIREASLLKGLKHANIV 66

Query: 395 TLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGV 454
            L+    T      V EY    DL     + PG     Y  R +  ++L  L Y+H   +
Sbjct: 67  LLHDIIHTKETLTFVFEYMHT-DLAQYMIQHPGG-LHPYNVRLFMFQLLRGLAYIHGQHI 124

Query: 455 VYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++RDLKP+N+L+   G + L+DF L+
Sbjct: 125 LHRDLKPQNLLISYLGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 48.1 bits (114), Expect = 7e-06
 Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 20/126 (15%)

Query: 374 KLTRAQTE---------REI-----LQLLDHPFLPTLY---THFETDRFS--CLVMEYCP 414
           K  R QT          RE+     L+  +HP +  L+   T   TDR +   LV E+  
Sbjct: 33  KRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHV- 91

Query: 415 GGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIML 474
             DL T   + P         +    ++L  L++LH   VV+RDLKP+N+LV   G I L
Sbjct: 92  DQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKL 151

Query: 475 SDFDLS 480
           +DF L+
Sbjct: 152 ADFGLA 157

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 21/167 (12%)

Query: 326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI- 384
           G   +  + +L +LG G  G VY +    T    A+K   K  + + K        REI 
Sbjct: 3   GCSKLRDYEILGKLGEGTFGEVYKARQIKTGRVVALK---KILMHNEKDGFPITALREIK 59

Query: 385 -LQLLDHP-FLPTL---YTHFETDRFSCLV-------MEYCPGGDLHTLRQRQPGKHFSE 432
            L+ L HP  +P +       +  +            M++   G L       P    +E
Sbjct: 60  ILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLE-----NPSVKLTE 114

Query: 433 YAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
              + Y  ++L  + YLH   +++RD+K  N+L+ + G + ++DF L
Sbjct: 115 SQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGL 161

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 49.0 bits (116), Expect = 8e-06
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 14/154 (9%)

Query: 325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI 384
           DG   ++ + ++K++G G  G V+L +   T+ +F  K +    L  R+K ++   E  +
Sbjct: 7   DGESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREK-SQLVIEVNV 65

Query: 385 LQLLDHPFLPTLYTHF--ETDRFSCLVMEYCPGGDLHTLRQ---RQPGKHFSEYAARFYA 439
           ++ L H  +      F  + ++   ++ME+C  GDL    Q   +  GK   E+A     
Sbjct: 66  MRELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGK-IEEHAIVDIT 124

Query: 440 AEVLLALEYLHMLG-------VVYRDLKPENVLV 466
            ++L AL Y H L        V++RDLKP+N+ +
Sbjct: 125 RQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFL 158

Length = 1021

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 19/164 (11%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKK---LTRAQTEREILQ 386
           +  F ++ ++G G  G VY +    T    A+K   K  L + K+   +T A  E +IL+
Sbjct: 6   VDKFDIIGQIGEGTYGQVYKARDKDTGELVALK---KVRLDNEKEGFPIT-AIREIKILR 61

Query: 387 LLDHPFLPTLY---------THFETDRFSC-LVMEYCPGGDLHTLRQRQPGKHFSEYAAR 436
            L+H  +  L            F+ D+ +  LV EY    DL  L +     HFSE   +
Sbjct: 62  QLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYM-DHDLMGLLESGL-VHFSEDHIK 119

Query: 437 FYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            +  ++L  L Y H    ++RD+K  N+L+ + G I L+DF L+
Sbjct: 120 SFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLA 163

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 43/164 (26%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 335 LLKRLGCGDIGSVYLSELSS-----TRCYFAMKVM-DKASLASRKKLTRAQTEREILQLL 388
           L + LG G  G V+L E         +   A+K + + AS  +RK   R   E E+L   
Sbjct: 9   LKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFER---EAELLTNF 65

Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LR-----------QRQPGKHFSEYAAR 436
            H  +   Y          +V EY   GDL+  LR              P    +     
Sbjct: 66  QHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLL 125

Query: 437 FYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             A ++   + YL     V+RDL   N LV  D  + + DF +S
Sbjct: 126 QIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMS 169

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 44/172 (25%), Positives = 67/172 (38%), Gaps = 23/172 (13%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSEL------SSTRCYFAMKVMDKASLASRKKLTRAQTE 381
           + +S  R ++ LG    G VY   L        T+      + DKA    R++       
Sbjct: 2   INLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMM 61

Query: 382 REILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPG------------K 428
           R  LQ   HP +  L      ++   ++  YC   DLH  L  R P             K
Sbjct: 62  RSRLQ---HPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVK 118

Query: 429 HFSEYAARFY-AAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
              E A   +   ++   +E+L    VV++DL   NVLV D  ++ +SD  L
Sbjct: 119 STLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGL 170

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 39/129 (30%), Positives = 51/129 (39%), Gaps = 33/129 (25%)

Query: 570 VGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVVGQQ 625
           V T  Y APE++ G       VD W  G    ELL G   F G  +   L   F  +G  
Sbjct: 161 VATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTP 220

Query: 626 ----------------LRFPDS---------PATSYASRDLIRGLLVKEPQHRLGVKRGA 660
                           + FP+S         P  S  + DL++GLLV +P  RL     A
Sbjct: 221 NEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRL----SA 276

Query: 661 TEIKQHPFF 669
            E  +HP+F
Sbjct: 277 AEALRHPYF 285

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 34/142 (23%)

Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGS-AVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
           A  T      +V T  Y APEI+    H +  VD W+ G  + ELL GKT F GS +   
Sbjct: 165 ARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQ 224

Query: 618 L---FNVVG-------------------------QQLRFPDS-PATSYASRDLIRGLLVK 648
           L    N+VG                          +  F +     +  + DL+  +LV 
Sbjct: 225 LKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVL 284

Query: 649 EPQHRLGVKRGATEIKQHPFFE 670
           +P  R+     A E   HP+  
Sbjct: 285 DPDKRI----TAAEALAHPYLA 302

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           F  +  LG G+ G V   +   +    A K++  +   A R ++ R   E ++L   + P
Sbjct: 7   FERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 63

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL-H 450
           ++   Y  F +D    + ME+  GG L  + +    K   E      +  VL  L YL  
Sbjct: 64  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKE--AKRIPEEILGKVSIAVLRGLAYLRE 121

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +++RD+KP N+LV   G I L DF +S
Sbjct: 122 KHQIMHRDVKPSNILVNSRGEIKLCDFGVS 151

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 19/106 (17%)

Query: 380 TEREILQLLDHPFLPTLYTHFETDRFSCLVME------YCPGGDLHTLRQRQPGKHFSEY 433
           TE  IL+ ++HP +  L   F  ++F+CL++       YC        ++          
Sbjct: 132 TEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYKTDLYCYLAA----KRNIA------- 180

Query: 434 AARFYAAE--VLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
                A E  VL A++YLH   +++RD+K EN+ +   G + L DF
Sbjct: 181 ICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDF 226

Length = 391

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 31/181 (17%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTR----CYFAMKVMDKASLASRKKLTRAQT------ 380
            H    ++LG G  G V+L E+ + +      F   V     L    K+ R         
Sbjct: 5   GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARN 64

Query: 381 ----EREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL-------HTLRQRQPGKH 429
               E +IL  L  P +  L      +   C++ EY   GDL       H   + + G  
Sbjct: 65  DFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGND 124

Query: 430 FSEYAARF----------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
               A              A ++   ++YL  L  V+RDL   N LV ++  I ++DF +
Sbjct: 125 AVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGM 184

Query: 480 S 480
           S
Sbjct: 185 S 185

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 5/147 (3%)

Query: 334 RLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFL 393
           +LL++LG G  G V+    ++T    A+K +   ++  +  L  AQ    I++ L HP L
Sbjct: 9   QLLRKLGAGQFGEVWEGLWNNT-TPVAVKTLKPGTMDPKDFLAEAQ----IMKKLRHPKL 63

Query: 394 PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG 453
             LY     +    +V E    G L    Q   G+          AA+V   + YL    
Sbjct: 64  IQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQN 123

Query: 454 VVYRDLKPENVLVRDDGHIMLSDFDLS 480
            ++RDL   NVLV ++    ++DF L+
Sbjct: 124 YIHRDLAARNVLVGENNICKVADFGLA 150

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 7/151 (4%)

Query: 331 SHFRLLKRLGCGDIGSVYLSE-LSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
              +L ++LG G  G V++     +T+   A+K +   +++    L  AQ    I++ L 
Sbjct: 6   ESLKLERKLGAGQFGEVWMGTWNGTTKV--AVKTLKPGTMSPEAFLQEAQ----IMKKLR 59

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           H  L  LY     +    +V EY   G L    +   GK          AA++   + YL
Sbjct: 60  HDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYL 119

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                ++RDL   N+LV ++    ++DF L+
Sbjct: 120 ESRNYIHRDLAARNILVGENLVCKIADFGLA 150

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 73/330 (22%), Positives = 121/330 (36%), Gaps = 99/330 (30%)

Query: 353 SSTRCYFAMKVMDKASLASRKKLTRAQTEREIL--QLL-----DHPFLPTLYTHFETDRF 405
           +S   Y AM V     +A R+   + Q ++E++  ++L      +P +      +     
Sbjct: 32  ASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDE 91

Query: 406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVL 465
             +VMEY  GG L  +          E        E L ALE+LH   V++RD+K +N+L
Sbjct: 92  LWVVMEYLAGGSLTDVVTETC---MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNIL 148

Query: 466 VRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPA 525
           +  DG + L+DF                              FC Q              
Sbjct: 149 LGMDGSVKLTDF-----------------------------GFCAQ-------------- 165

Query: 526 CFIPRIFPQKNKKKTRKPRSEL-GLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGE 584
                I P+++K      RS + G P    PE+V                         +
Sbjct: 166 -----ITPEQSK------RSTMVGTPYWMAPEVVTR-----------------------K 191

Query: 585 GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ---QLRFPDSPATSYASRDL 641
            +G  VD W+ GI   E++ G+ P+        L+ +      +L+ P+  +  +  RD 
Sbjct: 192 AYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIF--RDF 249

Query: 642 IRGLLVKEPQHRLGVKRG-ATEIKQHPFFE 670
           +   L  + +     KRG A E+ QH F +
Sbjct: 250 LNRCLDMDVE-----KRGSAKELLQHQFLK 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 24/154 (15%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKV--MDKASLASRKKLTRAQTEREILQLLDHPFLP 394
           +++G G+ G VY   L       A+K           RK L     E EIL+  DHP + 
Sbjct: 1   EKIGKGNFGDVYKGVLK-GNTEVAVKTCRSTLPPDLKRKFLQ----EAEILKQYDHPNIV 55

Query: 395 TLYTHFETDRFSCL-VMEYCPGGDLHTLRQRQPGK-------HFSEYAARFYAAEVLLAL 446
            L       +     VME  PGG L T  +++  +         S  AA          +
Sbjct: 56  KL-IGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAA--------GM 106

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           EYL     ++RDL   N LV ++  + +SDF +S
Sbjct: 107 EYLESKNCIHRDLAARNCLVGENNVLKISDFGMS 140

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 37/145 (25%), Positives = 51/145 (35%), Gaps = 43/145 (29%)

Query: 564 ARSMSFVG---------THEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSG 613
           AR  +            T  Y  PE++ G    G  VD W+ G  L EL  GK  F+GS 
Sbjct: 147 ARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGST 206

Query: 614 NRATL---FNVVG----------QQLRF--PDSPATSYASR--------------DLIRG 644
               L   F + G           +L +     P   Y  R              DL+  
Sbjct: 207 ELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDK 266

Query: 645 LLVKEPQHRLGVKRGATEIKQHPFF 669
           LL  +P+ R+     A +  QH +F
Sbjct: 267 LLTLDPKKRI----SADQALQHEYF 287

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 14/113 (12%)

Query: 566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNV 621
           + +F GT  Y+APE I+G+ +    D W+ G+ L E+   + PF   G        L + 
Sbjct: 160 AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSY 219

Query: 622 VGQQ--LRFPDSPAT----SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           +         D P      S   +D I+  L K+P  R         + +HP+
Sbjct: 220 IVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWD----MLEHPW 268

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 11/107 (10%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF---NV 621
           +SM   GT  ++APE+I   G+G   D W+ G  + E+  GK P       A +F     
Sbjct: 166 KSMH--GTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAH 223

Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
            G   R PDS   S A+ D +   L ++ QH    +  A ++ +H F
Sbjct: 224 RGLMPRLPDS--FSAAAIDFVTSCLTRD-QHE---RPSALQLLRHDF 264

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 382 REI--LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYA 439
           REI  L+ L H  L  L   F   +   LV E+     L  L +   G    E   R Y 
Sbjct: 49  REIRMLKQLRHENLVNLIEVFRRKKRLYLVFEFVDHTVLDDLEKYPNG--LDESRVRKYL 106

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
            ++L  +E+ H   +++RD+KPEN+LV   G + L DF
Sbjct: 107 FQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDF 144

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 6/147 (4%)

Query: 334 RLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFL 393
           +L+K+LG G  G V++   +      A+K + + S++    L  A     +++ L HP L
Sbjct: 9   KLVKKLGAGQFGEVWMGYYNGHT-KVAIKSLKQGSMSPEAFLAEAN----LMKQLQHPRL 63

Query: 394 PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG 453
             LY    T     ++ EY   G L    +   G   +       AA++   + ++    
Sbjct: 64  VRLYA-VVTQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKN 122

Query: 454 VVYRDLKPENVLVRDDGHIMLSDFDLS 480
            ++RDL+  N+LV +     ++DF L+
Sbjct: 123 YIHRDLRAANILVSETLCCKIADFGLA 149

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           + VGT  Y++PE+ +G  +    D W  G  L+ELL  K  F  + N   L   + Q   
Sbjct: 160 TVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDAT-NPLNLVVKIVQGNY 218

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHR 653
            P     S     L+  LL ++P+ R
Sbjct: 219 TPVVSVYSSELISLVHSLLQQDPEKR 244

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 8/99 (8%)

Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           ++ TAA S+  VGT  Y++PE I   G+    D W+ G  L+E+   ++PF   G++  L
Sbjct: 158 SKTTAAHSL--VGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPF--YGDKMNL 213

Query: 619 FNVVG--QQLRFPDSPATSYAS--RDLIRGLLVKEPQHR 653
           +++    +Q  +P  P+  Y+   R L+   +  +P+ R
Sbjct: 214 YSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKR 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 336 LKR-LGCGDIGSVY---LSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           L R +G G  G VY        + +   A+K     +  S ++      E  I++  DHP
Sbjct: 10  LGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQ--EAYIMRQFDHP 67

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
            +  L     T+    +VME  P G+L   L+  +        +   Y+ ++  AL YL 
Sbjct: 68  HIVKL-IGVITENPVWIVMELAPLGELRSYLQVNK--YSLDLASLILYSYQLSTALAYLE 124

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
               V+RD+   NVLV     + L DF LS
Sbjct: 125 SKRFVHRDIAARNVLVSSPDCVKLGDFGLS 154

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 6/150 (4%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           S   L++ +G G  G V+L      R   A+K + + +++    +  AQ    ++  L H
Sbjct: 4   SELTLVQEIGSGQFGLVWLGYWLEKR-KVAIKTIREGAMSEEDFIEEAQ----VMMKLSH 58

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P L  LY         CLV E+   G L    + Q GK FS+        +V   + YL 
Sbjct: 59  PKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGK-FSQETLLGMCLDVCEGMAYLE 117

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              V++RDL   N LV ++  + +SDF ++
Sbjct: 118 SSNVIHRDLAARNCLVGENQVVKVSDFGMT 147

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 31/177 (17%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKL---------TRA 378
           L +S  R ++ LG    G +Y       + +  +  MD A L + K L            
Sbjct: 2   LPLSAVRFMEELGECAFGKIY-------KGHLYLPGMDHAQLVAIKTLKDINNPQQWGEF 54

Query: 379 QTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPG---------- 427
           Q E  ++  L HP +  L      ++  C++ EY   GDLH  L  R P           
Sbjct: 55  QQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDED 114

Query: 428 ---KHFSEYAARFY-AAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              K   ++    + A ++   +EYL     V++DL   N+L+ +  H+ +SD  LS
Sbjct: 115 GTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLS 171

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 562 TAARSMSFVGTHEYLAPEII-KGEGHGSAVDWWTFGIFLHELLYGKTPFKG-SGNRATLF 619
            +++  +FVGT  ++APE+I +G+ + +  D W+ GI ++E+  G  P+      RA + 
Sbjct: 154 NSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMML 213

Query: 620 NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRL 654
               +  R  D+   S   R+ +   L +EP+ RL
Sbjct: 214 IPKSKPPRLEDN-GYSKLLREFVAACLDEEPKERL 247

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 6/149 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQLLDH 390
           ++ ++++G G  G VY +    T    A+K   K  L +  +   +   REI  L+ L+H
Sbjct: 1   YQKVEKIGEGTYGVVYKARDKLTGEIVALK---KIRLETEDEGVPSTAIREISLLKELNH 57

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P +  L     ++    LV E+    DL       P         + Y  ++L  + Y H
Sbjct: 58  PNIVRLLDVVHSENKLYLVFEFL-DLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCH 116

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
              V++RDLKP+N+L+  +G + L+DF L
Sbjct: 117 SHRVLHRDLKPQNLLIDREGALKLADFGL 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 13/113 (11%)

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-- 619
           T A+  + +GT  ++APE+I+  G+ +  D W+ GI   E+  GK P+        +F  
Sbjct: 152 TMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMI 211

Query: 620 -NVVGQQLRFPD--SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            N     L  P+  SP  +    D ++  LVK+P+ R      A ++ QHPF 
Sbjct: 212 PNKPPPTLSDPEKWSPEFN----DFVKKCLVKDPEER----PSAIQLLQHPFI 256

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 6/148 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
            +L+K+LG G  G V++   +      A+K +   +++    L  AQ    I++ L H  
Sbjct: 8   LQLIKKLGNGQFGEVWMGTWNGN-TKVAVKTLKPGTMSPESFLEEAQ----IMKKLRHDK 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           L  LY    ++    +V EY   G L    +   G+          AA+V   + Y+  +
Sbjct: 63  LVQLYA-VVSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM 121

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             ++RDL+  N+LV D     ++DF L+
Sbjct: 122 NYIHRDLRSANILVGDGLVCKIADFGLA 149

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 327 ILGMSHFRLLKRLGCGDIGSVY-------LSELSSTRCYFAMK-VMDKASLASRKKLTRA 378
            L      L++ LG G  G VY       +     TR   A+K V + AS+  R +    
Sbjct: 2   ELPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRV--AIKTVNENASMRERIEFLN- 58

Query: 379 QTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEY---- 433
             E  +++  +   +  L     T + + +VME    GDL + LR R+P    +      
Sbjct: 59  --EASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPP 116

Query: 434 -AARFY--AAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +F   AAE+   + YL     V+RDL   N +V +D  + + DF ++
Sbjct: 117 TLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMT 166

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional

 Score = 46.2 bits (109), Expect = 6e-05
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 441 EVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
           +VL  L  LH +G+V+RD+KPEN+LV  DG + + DF
Sbjct: 317 QVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDF 353

Length = 507

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 6/148 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
            RL  +LG G  G V++   + T    A+K +   ++     L  AQ    I++ L H  
Sbjct: 8   LRLDVKLGQGCFGEVWMGTWNGT-TKVAIKTLKPGTMMPEAFLQEAQ----IMKKLRHDK 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           L  LY     +    +V E+   G L    +   GK+         AA++   + Y+  +
Sbjct: 63  LVPLYAVVSEEPIY-IVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERM 121

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             ++RDL+  N+LV D+    ++DF L+
Sbjct: 122 NYIHRDLRAANILVGDNLVCKIADFGLA 149

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 33/130 (25%)

Query: 569 FVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--- 624
           +V T  Y APE++ G +G+ + VD W+ G    ELL  +  F G      LF +      
Sbjct: 158 YVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGT 217

Query: 625 ----------------QLRFPDS---------PATSYASRDLIRGLLVKEPQHRLGVKRG 659
                           +  FP           P  S  + DL+  +L  +P  R+     
Sbjct: 218 PDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRI----T 273

Query: 660 ATEIKQHPFF 669
           A +   HP+F
Sbjct: 274 AEQALAHPYF 283

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 25/161 (15%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMK----VMDKASLASRKKLTRAQTEREILQLL 388
           +++ + +G G  G V  +  + T    A+K    V +  S A     TR   E ++L+LL
Sbjct: 2   YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDA-----TRILREIKLLRLL 56

Query: 389 DHP--------FLPTLYTHFETDRFSCL-VMEYCPGGDLHTLRQRQPGKHFSEYAARFYA 439
            HP         LP     F+ D +    +ME     DLH + +         +  +F+ 
Sbjct: 57  RHPDIVEIKHIMLPPSRREFK-DIYVVFELME----SDLHQVIKANDDLTPEHH--QFFL 109

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            ++L AL+Y+H   V +RDLKP+N+L   D  + + DF L+
Sbjct: 110 YQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLA 150

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 9e-05
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +F GT  Y+APEI + + +    D ++ G+ L+ELL  K PF G      +   +  +  
Sbjct: 204 TFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYD 263

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHR 653
            P  P+ S   ++++  LL  +P+ R
Sbjct: 264 -PLPPSISPEMQEIVTALLSSDPKRR 288

Length = 496

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPF-KGSGNRATL 618
           ++VGT+ Y+APE I GE +G   D W+ GI   EL  G+ P+ +   N+ +L
Sbjct: 152 TYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSL 203

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 22/167 (13%)

Query: 332 HFRLLKR-LGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREIL 385
           H  +LKR LG G  G V+L+E         +   A+K +  AS  +RK   R   E E+L
Sbjct: 5   HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHR---EAELL 61

Query: 386 QLLDHPFLPTLY-THFETDRFSCLVMEYCPGGDLHT-----------LRQRQPGKHFSEY 433
             L H  +   Y    E D    +V EY   GDL+            + +       ++ 
Sbjct: 62  TNLQHEHIVKFYGVCVEGDPL-IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQS 120

Query: 434 AARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                A ++   + YL     V+RDL   N LV ++  + + DF +S
Sbjct: 121 QMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMS 167

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 44/193 (22%), Positives = 74/193 (38%), Gaps = 41/193 (21%)

Query: 312 DPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS 371
           DP W+           L      L K LG G  G V  +E         +   ++ S  +
Sbjct: 4   DPEWE-----------LPRDRLTLGKPLGEGAFGQVVKAE------AVGLDNPNETSTVA 46

Query: 372 RKKLTRAQTEREILQLL----------DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT- 420
            K L    TE+++  L+           H  +  L      +    +V+EY   G+L   
Sbjct: 47  VKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDF 106

Query: 421 LRQRQP-------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR 467
           LR R+P              +  ++     +A +V   +E+L     ++RDL   NVLV 
Sbjct: 107 LRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVT 166

Query: 468 DDGHIMLSDFDLS 480
           +D  + ++DF L+
Sbjct: 167 EDHVMKIADFGLA 179

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 15/153 (9%)

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDK---ASLASRK-----KLTRAQTEREILQL 387
           L  +G G  GSV  +  +  R   A+K + +   + + +R+     +L +      ++ L
Sbjct: 20  LTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGL 79

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           LD  F P   T  E      LV     G DL+ + + Q     S+   +F   ++L  L+
Sbjct: 80  LD-VFTPA--TSIENFNEVYLVTNLM-GADLNNIVKCQ---KLSDEHVQFLIYQLLRGLK 132

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           Y+H  G+++RDLKP NV V +D  + + DF L+
Sbjct: 133 YIHSAGIIHRDLKPSNVAVNEDCELRILDFGLA 165

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           F  +  LG G+ G V+      +    A K++  +   A R ++ R   E ++L   + P
Sbjct: 7   FEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 63

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL-H 450
           ++   Y  F +D    + ME+  GG L  + ++  G+   +   +   A V+  L YL  
Sbjct: 64  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIA-VIKGLTYLRE 121

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +++RD+KP N+LV   G I L DF +S
Sbjct: 122 KHKIMHRDVKPSNILVNSRGEIKLCDFGVS 151

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 334 RLLKRLGCGDIGSVYLSEL-SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           +L+K+LG G  G V++    +ST+   A+K +   +++ +  L  A     +++ L H  
Sbjct: 9   KLVKKLGAGQFGEVWMGYYNNSTKV--AVKTLKPGTMSVQAFLEEAN----LMKTLQHDK 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           L  LY     +    ++ EY   G L    +   G          ++A++   + Y+   
Sbjct: 63  LVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK 122

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             ++RDL+  NVLV +     ++DF L+
Sbjct: 123 NYIHRDLRAANVLVSESLMCKIADFGLA 150

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR 467
           L+MEY P   L +LR   P    +      +A ++   + YLH    ++RDL   NVL+ 
Sbjct: 85  LIMEYVP---LGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLD 141

Query: 468 DDGHIMLSDFDLS 480
           +D  + + DF L+
Sbjct: 142 NDRLVKIGDFGLA 154

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related kinase adapter protein alpha

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 3/143 (2%)

Query: 335 LLKRLGCG--DIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           LL  +G G  D+ +V L+    T  Y  ++ ++  +  + + +T  Q E  + +L +HP 
Sbjct: 2   LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEA-CTNEMVTFLQGELHVSKLFNHPN 60

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +      F  D    +V  +   G    L         SE A  +    VL AL+Y+H +
Sbjct: 61  IVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHM 120

Query: 453 GVVYRDLKPENVLVRDDGHIMLS 475
           G V+R +K  ++L+  DG + LS
Sbjct: 121 GYVHRSVKASHILISVDGKVYLS 143

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha, stabilized through ATP and MO25, may be needed to activate LKB1. A mutation which results in a truncation of a C-terminal part of the human STRAD-alpha pseudokinase domain and disrupts its association with LKB1, leads to PMSE (polyhydramnios, megalencephaly, symptomatic epilepsy) syndrome. Several splice variants of STRAD-alpha exist which exhibit different effects on the localization and activation of LKB1. Length = 327

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 16/116 (13%)

Query: 562 TAARSMSFVGTHEYLAPEII---KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           T A+  SF+GT  ++APE+    +  G+    D W  GI   EL   + P         L
Sbjct: 154 TIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRAL 213

Query: 619 FNVVGQQLRFPDSPATSYASR------DLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           F +          P      +      D I+  L K+P+ R      AT++ QHPF
Sbjct: 214 FLI---SKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKR----PTATKLLQHPF 262

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA 616
           L+  P  A + ++VGT  Y+ PEI +   + +  D W+ G  L+EL   K PF+ + +  
Sbjct: 149 LLTSP-GAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQ-ANSWK 206

Query: 617 TLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
            L   V Q    P     SY  R LI+ +  + P+ R
Sbjct: 207 NLILKVCQGSYKPLPSHYSYELRSLIKQMFKRNPRSR 243

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 38/132 (28%), Positives = 52/132 (39%), Gaps = 34/132 (25%)

Query: 569 FVGTHEYLAPEIIKGEGHGS-AVDWWTFGIFLHELLYGKTPFKG---------------- 611
           +V T  Y APEI+ G    +  VD W+ G  L E+L GK  F G                
Sbjct: 172 YVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGP 231

Query: 612 ----------SGNRATLFNVVGQQLRFPDS---PATSYASRDLIRGLLVKEPQHRLGVKR 658
                     S   AT+ + +  + R P     P  S  + DL++ LLV  P  RL    
Sbjct: 232 PSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRL---- 287

Query: 659 GATEIKQHPFFE 670
            A E  +HP+  
Sbjct: 288 TAEEALEHPYVA 299

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 568 SFVGTHEYLAPEII-----KGEGHGSAVDWWTFGIFLHELLYGKTPFKGS--GNRATLFN 620
           S VGT  Y++PE I      G   G A D W+ G+ + E   G+ PF     G+ A+L  
Sbjct: 227 SSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMC 286

Query: 621 VVGQQLRFPDSPAT-SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
            +    + P++PAT S   R  I   L +EP  R      A ++ QHPF
Sbjct: 287 AICMS-QPPEAPATASREFRHFISCCLQREPAKR----WSAMQLLQHPF 330

Length = 353

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 34/131 (25%), Positives = 46/131 (35%), Gaps = 37/131 (28%)

Query: 572 THE-----YLAPEIIKGEGHGS-AVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVV 622
           THE     Y APEI+ G    S  VD W+ G    E++  +  F G      L   F  +
Sbjct: 157 THEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTL 216

Query: 623 G----------QQL-----RFPDSPATSYAS---------RDLIRGLLVKEPQHRLGVKR 658
           G            L      FP       +           DL+  +LV +P  R+  K 
Sbjct: 217 GTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKA 276

Query: 659 GATEIKQHPFF 669
                 QHP+F
Sbjct: 277 AL----QHPYF 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 6/148 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
            RL  +LG G  G V++   + T    A+K +   +++    L  AQ    +++ L H  
Sbjct: 8   LRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTMSPEAFLQEAQ----VMKKLRHEK 62

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           L  LY     +    +V EY   G L    + + GK+         AA++   + Y+  +
Sbjct: 63  LVQLYAVVSEEPIY-IVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM 121

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             V+RDL+  N+LV ++    ++DF L+
Sbjct: 122 NYVHRDLRAANILVGENLVCKVADFGLA 149

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 23/167 (13%)

Query: 337 KRLGCGDIGSVYLSELSSTRCY----FAMKVMDKASLASRKKLTRAQT----------ER 382
           ++LG G  G V+L E      +    F++ V     +    K+ R             E 
Sbjct: 11  EKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEI 70

Query: 383 EILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAA------- 435
           +I+  L  P +  L     T    C++ EY   GDL+    R   +  +E A        
Sbjct: 71  KIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYS 130

Query: 436 --RFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              F A ++   ++YL  L  V+RDL   N LV  +  I ++DF +S
Sbjct: 131 TLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMS 177

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 381 EREILQLLDHP-FLPTLYTHFETDRFSCLVM-EYCPGGDLHTLRQRQPGKHFSEYAARFY 438
           E  +L+ L HP  L  L         +CLV+ +Y    DL+T    +  +          
Sbjct: 210 EARLLRRLSHPAVLALLDVR-VVGGLTCLVLPKY--RSDLYTYLGARL-RPLGLAQVTAV 265

Query: 439 AAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
           A ++L A++Y+H  G+++RD+K ENVLV     I L DF
Sbjct: 266 ARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDF 304

Length = 461

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 16/83 (19%)

Query: 408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEV-------LLALEYLHMLGVVYRDLK 460
           +VMEY    DL +L +             F  +EV       L  + +LH   +++RDLK
Sbjct: 83  MVMEYVEH-DLKSLMETMKQ--------PFLQSEVKCLMLQLLSGVAHLHDNWILHRDLK 133

Query: 461 PENVLVRDDGHIMLSDFDLSLRC 483
             N+L+ + G + + DF L+   
Sbjct: 134 TSNLLLNNRGILKICDFGLAREY 156

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
           ++E + A    +V T  Y +PE++ G  +G AVD W+ G  L EL  G+  F G      
Sbjct: 150 LSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQ 209

Query: 618 LFNV 621
           LF +
Sbjct: 210 LFTI 213

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
           A ++  VGT  YL+PE+ + + +    D W  G+ L+E   GK PF  +   A +  ++ 
Sbjct: 158 ANTI--VGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGALILKII- 214

Query: 624 QQLRFPDSPAT-SYASRDLIRGLLVKEPQHR 653
            +  FP      S     LI   L K+ + R
Sbjct: 215 -RGVFPPVSQMYSQQLAQLIDQCLTKDYRQR 244

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 20/113 (17%)

Query: 568 SFVGTHEYLAPEII-----KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           +F+GT  ++APE++     K   +    D W+ GI L EL   + P         L  ++
Sbjct: 162 TFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKIL 221

Query: 623 GQQLRFPDSPATSYASR------DLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
                  + P     S+      D ++  LVK+P  R      A E+ +HPF 
Sbjct: 222 KS-----EPPTLDQPSKWSSSFNDFLKSCLVKDPDDRP----TAAELLKHPFV 265

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 327 ILGMSHFRLLKRLGCGDIGSVY----LSELSSTRCYFAMKVMDKASLASRKKLTRAQTER 382
           IL  + F+ +K LG G  G+VY    + E    +   A+K + +A+  S K       E 
Sbjct: 3   ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT--SPKANKEILDEA 60

Query: 383 EILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEV 442
            ++  +D+P +  L     T     L+ +  P G L    +       S+Y    +  ++
Sbjct: 61  YVMASVDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYVREHKDNIGSQYLLN-WCVQI 118

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              + YL    +V+RDL   NVLV+   H+ ++DF L+
Sbjct: 119 AKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLA 156

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 15/40 (37%), Positives = 29/40 (72%)

Query: 441 EVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++L  +++LH  G+++RDLKP N++V+ D  + + DF L+
Sbjct: 126 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 165

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 23/166 (13%)

Query: 335 LLKR-LGCGDIGSVYLSE---LSST--RCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
           +LKR LG G  G V+L+E   LS T  +   A+K +   +LA+RK   R   E E+L  L
Sbjct: 8   VLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQR---EAELLTNL 64

Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTL--------------RQRQPGKHFSEYA 434
            H  +   Y          +V EY   GDL+                + RQ         
Sbjct: 65  QHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQ 124

Query: 435 ARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
               A+++   + YL     V+RDL   N LV  +  + + DF +S
Sbjct: 125 MLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMS 170

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           T  +  +FVGT  ++APE+IK   + S  D W+ GI   EL  G+ P         LF +
Sbjct: 154 TQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLI 213

Query: 622 VGQQLRFPDSPATSYAS--RDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
                  P +   +Y+   ++ +   L KEP  R   K    E+ +H F
Sbjct: 214 PKNN---PPTLEGNYSKPLKEFVEACLNKEPSFRPTAK----ELLKHKF 255

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 40/159 (25%), Positives = 60/159 (37%), Gaps = 47/159 (29%)

Query: 566 SM--SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPF--KGSGNRATLFNV 621
           SM  SFVGT  Y++PE ++G  +    D W+ G+ L E+  G+ P     +     +F  
Sbjct: 153 SMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGR 212

Query: 622 VGQQL-----------RFPDSPAT-----------------------SYASRDLIRGLLV 647
              +              PDSP                         S   +D +   L 
Sbjct: 213 PVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLK 272

Query: 648 KEPQHRLGVKRGATEIKQHPFF-----EGVNWALIRCST 681
           K P+ R  +K    E+ +HPF      E V++A   CST
Sbjct: 273 KNPKERADLK----ELTKHPFIKRAELEEVDFAGWVCST 307

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 11/156 (7%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M  +  ++++G G  G VY +    T    A+K   K  L    +   +   REI  L+ 
Sbjct: 1   MDQYEKVEKIGEGTYGVVYKARDRVTNETIALK---KIRLEQEDEGVPSTAIREISLLKE 57

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSE--YAARFYAAEVLLA 445
           + H  +  L     +++   LV EY    DL   +       F++     + Y  ++L  
Sbjct: 58  MQHGNIVRLQDVVHSEKRLYLVFEYL---DLDLKKHMDSSPDFAKNPRLIKTYLYQILRG 114

Query: 446 LEYLHMLGVVYRDLKPENVLV-RDDGHIMLSDFDLS 480
           + Y H   V++RDLKP+N+L+ R    + L+DF L+
Sbjct: 115 IAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLA 150

Length = 294

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 25/176 (14%)

Query: 327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMK-----VMDKASLASRKKLTRAQTE 381
           +L +    L + +G G+ G+V   E +  +   A+K     V  +A L     +T+   +
Sbjct: 2   LLNLQKLTLGEIIGEGEFGAVLQGEYTGQKV--AVKNIKCDVTAQAFLEETAVMTKLHHK 59

Query: 382 REILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARF-YA 439
             +++LL       LY          +VME    G+L + LR R  G+          ++
Sbjct: 60  -NLVRLLGVILHNGLY----------IVMELMSKGNLVNFLRTR--GRALVSVIQLLQFS 106

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL 495
            +V   +EYL    +V+RDL   N+LV +DG   +SDF L+    V    +  S L
Sbjct: 107 LDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLA---RVGSMGVDNSKL 159

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 415 GGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIML 474
           G DL+ + + Q     ++   +F   ++L  L+Y+H   +++RDLKP N+ V +D  + +
Sbjct: 105 GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKI 161

Query: 475 SDFDLS 480
            DF L+
Sbjct: 162 LDFGLA 167

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR 467
           L+ME+ P G L     R   K   +   + YA ++   ++YL     V+RDL   NVLV 
Sbjct: 85  LIMEFLPSGSLKEYLPRNKNKINLKQQLK-YAVQICKGMDYLGSRQYVHRDLAARNVLVE 143

Query: 468 DDGHIMLSDFDLS 480
            +  + + DF L+
Sbjct: 144 SEHQVKIGDFGLT 156

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 36/133 (27%)

Query: 569 FVGTHEYLAPEI-IKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +V T  Y APEI +  + +  A+D W+ G  L ELL  K  FKG      L  ++ Q L 
Sbjct: 169 YVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQIL-QVLG 227

Query: 628 FPDS------------------------------PATSYASRDLIRGLLVKEPQHRLGVK 657
            PD                               P  +  + DL+  LL  +P  R+ V+
Sbjct: 228 TPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVE 287

Query: 658 RGATEIKQHPFFE 670
               E  +HP+  
Sbjct: 288 ----EALEHPYLA 296

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           + +++ + VGT  Y++PE+ +G+ +    D W  G  L+EL   K  F+ +   A +  +
Sbjct: 154 SKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKI 213

Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHP 667
           +      P S   S   R LI  +L  +P  R  +    ++I   P
Sbjct: 214 MSGTFA-PISDRYSPDLRQLILSMLNLDPSKRPQL----SQIMAQP 254

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           S  G+  ++APE++K   +    D W+ G  + E+L GK PF        +F  +G+   
Sbjct: 171 SLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFK-IGENAS 229

Query: 628 FPDSPA-TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
            P+ P+  S  + D +      E  H    +  A E+ +HPF
Sbjct: 230 -PEIPSNISSEAIDFLEKTF--EIDHNK--RPTAAELLKHPF 266

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 31/162 (19%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMK-VMDKASLASRKKLTRAQTEREILQLLDHP 391
           ++L   +G G  G VY +    T    A+K V+      +R+ L        I++ L+H 
Sbjct: 68  YKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDPQYKNRELL--------IMKNLNHI 119

Query: 392 FLPTLYTHFETDRFS--------CLVMEYCPGGDLHTLRQRQPGKHFSE-------YAAR 436
            +  L  ++ T+ F          +VME+ P     T+ +    KH++        +  +
Sbjct: 120 NIIFLKDYYYTECFKKNEKNIFLNVVMEFIP----QTVHKYM--KHYARNNHALPLFLVK 173

Query: 437 FYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIM-LSDF 477
            Y+ ++  AL Y+H   + +RDLKP+N+L+  + H + L DF
Sbjct: 174 LYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDF 215

Length = 440

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 42.0 bits (98), Expect = 7e-04
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 8/158 (5%)

Query: 327 ILGMSHFRLLKRLGCGDIGSVY----LSELSSTRCYFAMKVMDKASLASRKKLTRAQTER 382
           IL  +  + +K LG G  G+VY    + E  + +   A+K++++ +    K       E 
Sbjct: 3   ILKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETT--GPKANVEFMDEA 60

Query: 383 EILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEV 442
            I+  +DHP L  L     +     LV +  P G L            S+     +  ++
Sbjct: 61  LIMASMDHPHLVRLLGVCLSPTIQ-LVTQLMPHGCLLDYVHEHKDNIGSQLLLN-WCVQI 118

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              + YL    +V+RDL   NVLV+   H+ ++DF L+
Sbjct: 119 AKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLA 156

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 417 DLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLS 475
           DLH  +R  Q     S+   +++  ++L  L+Y+H   V++RDLKP N+L+  +  + + 
Sbjct: 94  DLHQIIRSSQT---LSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKIC 150

Query: 476 DFDLS 480
           DF L+
Sbjct: 151 DFGLA 155

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 35/143 (24%)

Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGN-- 614
           +    A+    +V T  Y APE++ G+  +G  VD W  G  + ELL G+  F G  +  
Sbjct: 150 LRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDID 209

Query: 615 -----RATLFNVVGQQ------------LRFPDSP-----------ATSYASRDLIRGLL 646
                +  L  +                + FP+               S  + D ++  L
Sbjct: 210 QLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACL 269

Query: 647 VKEPQHRLGVKRGATEIKQHPFF 669
             +P+ RL       E+ QHP+F
Sbjct: 270 RMDPKERL----TCDELLQHPYF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 23/112 (20%)

Query: 571 GTHEYLAPEIIKGEGHGSAV----DWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           G   Y+APE I  E +        D W+ GI + EL  G+ P+    +  T F    QQL
Sbjct: 165 GCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYD---SWKTPF----QQL 217

Query: 627 R------FPDSPATSYAS--RDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
           +       P  PA  ++   +D +   L K  + R        E+ QHPFFE
Sbjct: 218 KQVVEEPSPQLPAEKFSPEFQDFVNKCLKKNYKERPNY----PELLQHPFFE 265

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 31/189 (16%)

Query: 312 DPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSE---LSSTRCYFAMKVMDK-- 366
           DPRW+       RD ++      L K LG G  G V ++E   L   +     KV  K  
Sbjct: 10  DPRWEV-----PRDRLV------LGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKML 58

Query: 367 ASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQR 424
            S A+ K L+   +E E+++++  H  +  L      D    +++EY   G+L   LR R
Sbjct: 59  KSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR 118

Query: 425 QPG--------KHFSEYAARFY-----AAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH 471
           +P             E    F      A +V   +EYL     ++RDL   NVLV +D  
Sbjct: 119 RPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNV 178

Query: 472 IMLSDFDLS 480
           + ++DF L+
Sbjct: 179 MKIADFGLA 187

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase adapter protein beta

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 340 GCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTH 399
           G  ++ SVYL+  + T     +++ D  +  + + L   Q E  +     HP + T +T 
Sbjct: 9   GFCNLTSVYLARHTPTGTLVTVRITDLEN-CTEEHLKALQNEVVLSHFFRHPNIMTSWTV 67

Query: 400 FETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDL 459
           F T  +  ++  +   G  ++L +    +  SE          L  L YLH  G ++R++
Sbjct: 68  FTTGSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNI 127

Query: 460 KPENVLVRDDGHIMLS 475
           K  ++L+  DG + LS
Sbjct: 128 KASHILISGDGLVSLS 143

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. STRAD-beta is also referred to as ALS2CR2 (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 2 protein), since the human gene encoding it is located within the juvenile ALS2 critical region on chromosome 2q33-q34. It is not linked to the development of ALS2. Length = 328

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 33/130 (25%)

Query: 569 FVGTHEYLAPEII-KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV----- 622
           +V T  Y APEI+ +   + S VD W  G  + EL   +  F GS     L+ +      
Sbjct: 158 YVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGT 217

Query: 623 --------GQQL------RFPDSPATSY------ASR---DLIRGLLVKEPQHRLGVKRG 659
                   G +L      RFP    TS       AS    DLI+ +L  +P+ R      
Sbjct: 218 PTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRP----T 273

Query: 660 ATEIKQHPFF 669
           A++  QHP+F
Sbjct: 274 ASQALQHPYF 283

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF- 628
           +GT  YL+PEI +   + +  D W  G  L+E+   K  F+ +GN   + N+V + +R  
Sbjct: 162 IGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFE-AGN---MKNLVLKIIRGS 217

Query: 629 --PDSPATSYASRDLIRGLLVKEPQHRLGV 656
             P S   SY  R+L+  L  + P+ R  V
Sbjct: 218 YPPVSSHYSYDLRNLVSQLFKRNPRDRPSV 247

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 10/109 (9%)

Query: 566 SMSFVGTHEYLAPEII--KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
           +MS  G+  ++APE+I    +G+ + VD W+ G  + E+  G+ P+      A +F +  
Sbjct: 167 NMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGN 226

Query: 624 QQLRFPDSPAT----SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           ++   P  P      S  + D +       P +R      A E+ QHPF
Sbjct: 227 KRSAPPIPPDVSMNLSPVALDFLNACFTINPDNR----PTARELLQHPF 271

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 17/109 (15%)

Query: 568 SFVGTHEYLAPEIIKG--EGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           SFVGT  ++APE+I    EG     VD W+ GI   EL   K P       + L+++   
Sbjct: 170 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQN 229

Query: 625 QLRFPDSPAT-----SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
                DSP       S   R+ +   L K PQ R      + E+ +H F
Sbjct: 230 -----DSPTLSSNDWSDYFRNFVDSCLQKIPQDRP----SSEELLKHRF 269

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           T  +  +FVGT  ++APE+I+   + S  D W+ GI   EL  G+ P         LF +
Sbjct: 154 TQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLI 213

Query: 622 VGQQLRFPDSPATSYASR---DLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
                +      T   S+   + I   L K+P  R   K    E+ +H F
Sbjct: 214 P----KNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAK----ELLKHKF 255

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 35/144 (24%)

Query: 560 EPTAARSMS-FVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
           +      ++ +V T  Y APE++        A+D W+ G    ELL  K  F G      
Sbjct: 156 DEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQ 215

Query: 618 L---FNVVG----QQLRFPDSP-ATSY------------------ASR---DLIRGLLVK 648
           L     V+G    + L+F  S  A +Y                  AS    DL+  +LV 
Sbjct: 216 LNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVF 275

Query: 649 EPQHRLGVKRGATEIKQHPFFEGV 672
           +P+ R+       E   HP+   +
Sbjct: 276 DPKKRITAD----EALAHPYLAQL 295

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 15/112 (13%)

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           T  +  +FVGT  ++APE+IK   +    D W+ GI   EL  G+ P         LF  
Sbjct: 154 TQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLF-- 211

Query: 622 VGQQLRFPDSPAT-----SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
               L   +SP T     S   ++ +   L K+P+ R      A E+ +H F
Sbjct: 212 ----LIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFR----PTAKELLKHKF 255

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 35/139 (25%)

Query: 561 PTAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL- 618
               +  + V T  Y  PE++ GE  + +AVD W  G    E+   +   +G  +   L 
Sbjct: 178 GGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLH 237

Query: 619 --FNVVG-----------------QQLRFPDSPATSYASR---------DLIRGLLVKEP 650
             F + G                     F + P T    R         DL+  LL  +P
Sbjct: 238 LIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRT-LEERFGKLGPEGLDLLSKLLSLDP 296

Query: 651 QHRLGVKRGATEIKQHPFF 669
             RL     A++  +HP+F
Sbjct: 297 YKRL----TASDALEHPYF 311

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 38/152 (25%)

Query: 567 MSFVGTHEYLAPE-IIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG--NRATLF-NVV 622
             +V T  Y APE ++    + +A+D W+ G    ELL  K  F G    ++  L   ++
Sbjct: 166 TEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELL 225

Query: 623 GQQ----LRF-------------PDSPATSYASR---------DLIRGLLVKEPQHRLGV 656
           G      L F             P +P  S+A           DL+  +LV +P  R+ V
Sbjct: 226 GSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITV 285

Query: 657 KRGATEIKQHPFFEGVNWALIRCSTPPEVPRP 688
                E   HP+      +L   S  P    P
Sbjct: 286 ----EEALAHPYLA----SLHDPSDEPVCQTP 309

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 15/159 (9%)

Query: 335 LLKRLGCGDIGSVYLSELSSTRCYF--AMKVMDKASLASRKKLTRAQTEREILQLLDHP- 391
           L K LG G+ GSV   +L+        A+K M K ++ +R ++    +E   ++  DHP 
Sbjct: 3   LGKTLGEGEFGSVMEGQLNQDDSILKVAVKTM-KIAICTRSEMEDFLSEAVCMKEFDHPN 61

Query: 392 ---FLPTLYTHFETDRFSC--LVMEYCPGGDLHT--LRQR---QPGKHFSEYAARFYAAE 441
               +       E++ +    +++ +   GDLH+  L  R    P    ++   +F   +
Sbjct: 62  VMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKF-MTD 120

Query: 442 VLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +   +EYL     ++RDL   N ++ ++ ++ ++DF LS
Sbjct: 121 IASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLS 159

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           +V T  Y APE+I G G+   VD W+ G  + EL+ G   F+G+ +    +N V +QL  
Sbjct: 182 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT-DHIDQWNKVIEQL-- 238

Query: 629 PDSPATSYASR--DLIRGLLVKEPQH 652
             +P+  + +R    +R  +   PQ+
Sbjct: 239 -GTPSAEFMNRLQPTVRNYVENRPQY 263

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 15/40 (37%), Positives = 29/40 (72%)

Query: 441 EVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++L  +++LH  G+++RDLKP N++V+ D  + + DF L+
Sbjct: 131 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 170

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 417 DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSD 476
           DLH +         S    + +  ++L  L+YLH  G+++RD+KP N+LV  +  + + D
Sbjct: 89  DLHKIIVSPQ--PLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICD 146

Query: 477 FDLS 480
           F L+
Sbjct: 147 FGLA 150

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 34/137 (24%)

Query: 564 ARSMSFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGS---GNRATLF 619
           A    +V T  Y APE+I    H    VD W+ G  + E+L GKT FKG         + 
Sbjct: 169 AEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQIL 228

Query: 620 NVVG-------QQL-------------RFPDS------PATSYASRDLIRGLLVKEPQHR 653
            V G       Q+L             ++P        P  S  + DL+  +L  +   R
Sbjct: 229 KVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKR 288

Query: 654 LGVKRGATEIKQHPFFE 670
           L     ATE  +HP+F+
Sbjct: 289 L----TATEALEHPYFD 301

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 34/143 (23%)

Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGS-AVDWWTFGIFLHELLYGKTPFKGSGNRA 616
           +A  T +    +V T  Y APE+I    H +  VD W+ G  + E+L GK  FKG  +  
Sbjct: 164 LARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLD 223

Query: 617 TLFNVVG----------QQLRFPDS-------------------PATSYASRDLIRGLLV 647
            L  ++           Q+L+  D+                   P  +  + +++  +LV
Sbjct: 224 QLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLV 283

Query: 648 KEPQHRLGVKRGATEIKQHPFFE 670
            + + R+     A E   HP+FE
Sbjct: 284 LDAESRI----TAAEALAHPYFE 302

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 46/159 (28%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG-----NRAT------ 617
           +V T  Y APE+I G G+   VD W+ G  + E++ G   F G+      N+        
Sbjct: 177 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTP 236

Query: 618 ---LFNVVGQQLR-----------------FPDS--PATS------YAS--RDLIRGLLV 647
                + +   +R                 FPD   P  S       AS  RDL+  +LV
Sbjct: 237 SDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLV 296

Query: 648 KEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP 686
            +P+ R+ V     +  QHP+   V +       PP  P
Sbjct: 297 IDPEKRISV----DDALQHPYIN-VWYDPSEVEAPPPAP 330

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 558 VAEPTAARSMSF-VGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSG 613
           V EP  ++ M+  V T  Y APEI+ G  H  SAVD W+ G    ELL  +  F+   
Sbjct: 152 VEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQS 209

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 20/160 (12%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA-SRKKLTRAQTERE------ 383
           S  ++ K +G G+ G V         C   +K+  K  +  + K L    TE++      
Sbjct: 4   SCIKIEKVIGAGEFGEV---------CSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLS 54

Query: 384 ---ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAA 440
              I+   DHP +  L       +   +V EY   G L    ++  G  F+         
Sbjct: 55  EASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHDG-QFTVIQLVGMLR 113

Query: 441 EVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            +   ++YL  +G V+RDL   N+LV  +    +SDF LS
Sbjct: 114 GIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLS 153

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 16/46 (34%), Positives = 30/46 (65%)

Query: 441 EVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS 486
           ++L  +++LH  G+++RDLKP N++V+ D  + + DF L+     S
Sbjct: 127 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS 172

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 73/319 (22%), Positives = 111/319 (34%), Gaps = 55/319 (17%)

Query: 190 RASQNTENSLLPPDSEEKECVWDASLPPSGNVSPHSSIDST--GVVTAMSIVNSCASTYR 247
           RA +       P D   K C         G ++  + I         A   V S  +  R
Sbjct: 17  RAEERKRRREHPHDR--KRCAILDDFDEDGRLAHIAEILPNAEECAEAAEKV-SIMAPER 73

Query: 248 SDVITSDGML-SMERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANK 306
           +D   +   L       E        D   SA    S A DS     D         A  
Sbjct: 74  ADPTGAHRALEDAAPAGELLVPRSNADLFASAGDGPSGAEDSDASHLD------FDEAPP 127

Query: 307 PHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSV-------YLSELSSTRCYF 359
              G  P  +A L  +  D  L  +HFR++  L  G  G +          E  + R   
Sbjct: 128 DAAGPVPLAQAKL--KHDDEFL--AHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVN 183

Query: 360 AM---KVMDKASLASR-KKLTRA--QTEREILQL--LDHPFLPTL--------YTHFETD 403
           +    K   +  +A R K  +RA  Q E EIL L  L+H  +  +         T+  T 
Sbjct: 184 STNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENILKIEEILRSEANTYMITQ 243

Query: 404 RFSCLVMEYCPGGDLH-----TLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRD 458
           ++   +  +             L+Q            R    ++L A+EY+H   +++RD
Sbjct: 244 KYDFDLYSFMYDEAFDWKDRPLLKQ-----------TRAIMKQLLCAVEYIHDKKLIHRD 292

Query: 459 LKPENVLVRDDGHIMLSDF 477
           +K EN+ +  DG I+L DF
Sbjct: 293 IKLENIFLNCDGKIVLGDF 311

Length = 501

>gnl|CDD|223554 COG0478, COG0478, RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 17/112 (15%)

Query: 371 SRKKLTR--AQTEREILQLLDHPF---LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQ 425
           S   ++R  A+ E E LQ L +P    +P        +R   +VMEY  G +L+ LR   
Sbjct: 147 SWLYVSRLAAEREFEALQRL-YPEGVKVPKPIAW---NR-HAVVMEYIEGVELYRLRLDV 201

Query: 426 PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
                          ++L  +   +  G+V+ DL   N+LV +DG I++ D+
Sbjct: 202 -----ENPDEILD--KILEEVRKAYRRGIVHGDLSEFNILVTEDGDIVVIDW 246

Length = 304

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 16/46 (34%), Positives = 30/46 (65%)

Query: 441 EVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS 486
           ++L  +++LH  G+++RDLKP N++V+ D  + + DF L+     S
Sbjct: 134 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS 179

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 25/171 (14%)

Query: 335 LLKRLGCGDIGSV---YLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           L K LG G+ G V       L     Y  + V      AS  +L    +E  +L+ ++HP
Sbjct: 4   LGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHP 63

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTL----RQRQPGKHFSEYAARF---------- 437
            +  LY     D    L++EY   G L +     R+  P    S+               
Sbjct: 64  HVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERA 123

Query: 438 --------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                   +A ++   ++YL  + +V+RDL   NVLV +   + +SDF LS
Sbjct: 124 LTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLS 174

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 3/144 (2%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTL 396
           +R+G G+ G V+   L +     A+K   + +L    K    Q  R IL+   HP +  L
Sbjct: 1   ERIGRGNFGEVFSGRLRADNTPVAVKSC-RETLPPDLKAKFLQEAR-ILKQYSHPNIVRL 58

Query: 397 YTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVY 456
                  +   +VME   GGD  T  + + G                  +EYL     ++
Sbjct: 59  IGVCTQKQPIYIVMELVQGGDFLTFLRTE-GPRLKVKELIQMVENAAAGMEYLESKHCIH 117

Query: 457 RDLKPENVLVRDDGHIMLSDFDLS 480
           RDL   N LV +   + +SDF +S
Sbjct: 118 RDLAARNCLVTEKNVLKISDFGMS 141

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 439 AAEVLLALEYL-HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           A   + AL YL   L +++RD+KP N+L+  +G+I L DF +S
Sbjct: 113 AVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGIS 155

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR 467
           +V E     DL+ L + Q   H S    +++  ++L  L+Y+H   V++RDLKP N+L+ 
Sbjct: 85  IVQELMET-DLYKLIKTQ---HLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLN 140

Query: 468 DDGHIMLSDFDLS 480
            +  + + DF L+
Sbjct: 141 TNCDLKICDFGLA 153

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 45/158 (28%), Positives = 66/158 (41%), Gaps = 16/158 (10%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQT---EREI 384
           L M   +LL+ +G G+ G V L +              K ++   K    AQ    E  +
Sbjct: 3   LNMKELKLLQTIGKGEFGDVMLGDYRGN----------KVAVKCIKNDATAQAFLAEASV 52

Query: 385 LQLLDHPFLPTLYTHFETDRFSC-LVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEV 442
           +  L H  L  L      ++    +V EY   G L   LR R       +   +F + +V
Sbjct: 53  MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF-SLDV 111

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             A+EYL     V+RDL   NVLV +D    +SDF L+
Sbjct: 112 CEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLT 149

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 39/161 (24%), Positives = 58/161 (36%), Gaps = 49/161 (30%)

Query: 564 ARSMS-FVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           A+ M+  V T  Y APE++ G   + +A+D W  G  L ELL  K    G      L ++
Sbjct: 162 AKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQL-DL 220

Query: 622 VGQQLRFPDS-----------------------------PATSYASRDLIRGLLVKEPQH 652
           + Q L  P+                              P  S A   L+  LL+ +P+ 
Sbjct: 221 IIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKK 280

Query: 653 RLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAEL 693
           R      A E  +  +F+             E P P E E+
Sbjct: 281 RA----TAEEALESSYFK-------------EKPLPCEPEM 304

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRA 616
           +A  T      +V T  Y APEI+    H    VD W+ G  + ELL G+T F G+ +  
Sbjct: 166 LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH-- 223

Query: 617 TLFNVVGQQLRFPDSPATSYASR 639
              + +   LR   +P      +
Sbjct: 224 --IDQLKLILRLVGTPGAELLKK 244

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 44/182 (24%), Positives = 67/182 (36%), Gaps = 53/182 (29%)

Query: 546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYG 605
           + GL  +     +  P       +V T  Y APE+I G G+   VD W+ G  + E++ G
Sbjct: 169 DFGLARTAGTSFMMTP-------YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKG 221

Query: 606 KTPFKGSGNRATLFNVVGQQL--------------------------------RFPDS-- 631
              F G+ +    +N V +QL                                 FPD   
Sbjct: 222 GVLFPGT-DHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLF 280

Query: 632 PATS-------YASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPE 684
           PA S         +RDL+  +LV +   R+ V     E  QHP+           + PP+
Sbjct: 281 PADSEHNKLKASQARDLLSKMLVIDASKRISVD----EALQHPYINVWYDPSEAEAPPPK 336

Query: 685 VP 686
           +P
Sbjct: 337 IP 338

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 30/169 (17%)

Query: 327 ILGMSHFRLLKRLGCGDIGSV----YLSELSSTRCYFAMKVMDKASLASRKKLTRAQTER 382
           IL  +  R LK LG G  G+V    ++ E  S +   A+K +   S   R+         
Sbjct: 3   ILKETELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRS--GRQTFQEITDHM 60

Query: 383 EILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARF----- 437
             +  LDH ++  L             +  CPG  L  + Q  P     ++  +      
Sbjct: 61  LAMGSLDHAYIVRL-------------LGICPGASLQLVTQLSPLGSLLDHVRQHRDSLD 107

Query: 438 ------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                 +  ++   + YL    +V+R+L   N+L++ D  + ++DF ++
Sbjct: 108 PQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVA 156

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 394 PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG 453
           P +Y   + + F  +VMEY  G  L  L     G    E +        L+    LH  G
Sbjct: 64  PAVY-FVDPENFI-IVMEYIEGEPLKDL-INSNGMEELELS---REIGRLVGK--LHSAG 115

Query: 454 VVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +++ DL   N+++     I L DF L+
Sbjct: 116 IIHGDLTTSNMILSGGK-IYLIDFGLA 141

Length = 211

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL- 603
           S+ GL S  L +  ++PT   S+       + APE I      SA D W++GI + E++ 
Sbjct: 148 SDFGL-SRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 206

Query: 604 YGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
           YG+ P+    N+  + N + Q  R P       A   L+     K+   R
Sbjct: 207 YGERPYWDMSNQDVI-NAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNAR 255

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 34/131 (25%)

Query: 569 FVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGN-------RATLFN 620
           +V T  Y APE++ G+  +G  VD W  G    ELL G+  + G  +       R TL +
Sbjct: 160 YVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGD 219

Query: 621 VV--------------GQQLRFPDS--------PATSYASRDLIRGLLVKEPQHRLGVKR 658
           ++              G  +  P++        P  S  +   ++G L  +P  RL    
Sbjct: 220 LIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERL---- 275

Query: 659 GATEIKQHPFF 669
              E+ +HP+F
Sbjct: 276 SCEELLEHPYF 286

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 577 APEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLFNVVGQQLRFPDSPATS 635
           APE        +  D W+FGI L+E+  YG+ P+ G  N    ++ +    R P      
Sbjct: 172 APEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEV-YDQITAGYRMPCPAKCP 230

Query: 636 YASRDLIRGLLVKEPQHR 653
                ++      EP+ R
Sbjct: 231 QEIYKIMLECWAAEPEDR 248

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 37/132 (28%)

Query: 570 VGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVVG-- 623
           V T  Y APE++ G     +A+D W+ G    ELL  K  F G      L   F ++G  
Sbjct: 167 VVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTP 226

Query: 624 ------------------------QQLR--FPDSPATSYASRDLIRGLLVKEPQHRLGVK 657
                                    QLR  FP + + S    DL+  LL  +P  R+   
Sbjct: 227 TEKIWPGFSELPGAKKKTFTKYPYNQLRKKFP-ALSLSDNGFDLLNRLLTYDPAKRI--- 282

Query: 658 RGATEIKQHPFF 669
             A +  +HP+F
Sbjct: 283 -SAEDALKHPYF 293

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 570 VGTH-----EYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLFNVV- 622
           VG H      ++ PE I      +  D W+FG+ L E+  YGK P+    N   +  +  
Sbjct: 181 VGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQ 240

Query: 623 GQQLRFPD-SPATSYASRDLIRGLLVKEPQHRLGVK 657
           G+ L  P   P   Y   D++ G   +EPQ RL +K
Sbjct: 241 GRVLERPRVCPKEVY---DIMLGCWQREPQQRLNIK 273

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 40/141 (28%), Positives = 56/141 (39%), Gaps = 46/141 (32%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-- 626
           +V T  Y APE+I G G+   VD W+ G  + E++  K  F G  +    +N V +QL  
Sbjct: 178 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR-DYIDQWNKVIEQLGT 236

Query: 627 ------------------------------RFPDS--PATS-------YASRDLIRGLLV 647
                                          FPDS  PA S         +RDL+  +LV
Sbjct: 237 PCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLV 296

Query: 648 KEPQHRLGVKRGATEIKQHPF 668
            +P  R+ V     E  QHP+
Sbjct: 297 IDPAKRISVD----EALQHPY 313

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 26/120 (21%)

Query: 564 ARSMSFVGTHEYLAPEII---KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN 620
           A++    G   Y+APE I     +G+    D W+ GI L+E+  GK P+         +N
Sbjct: 163 AKTRD-AGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPK-------WN 214

Query: 621 VVGQQL---------RFPDSPATSYASR--DLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            V  QL            +S    ++    + I   L+K+   R   K     + +HPF 
Sbjct: 215 SVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKE----LLEHPFI 270

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 11/151 (7%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS----RKKLTRAQTEREILQLLDHPF 392
           K +G G  G V L E++S      + V +    AS     K L  AQ  R    L     
Sbjct: 1   KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYR---SLQHSNL 57

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFS--EYAARFYAAEVLLALEYL 449
           L  L    E   +  LVME+CP GDL   LR  +  +  +      +  A E+ L L +L
Sbjct: 58  LQCLGQCTEVTPY-LLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHL 116

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           H    ++ DL   N L+  D  + + D+ LS
Sbjct: 117 HKNNFIHSDLALRNCLLTADLTVKIGDYGLS 147

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 24/145 (16%)

Query: 357 CYFAMKVM-DKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPG 415
              A+K++ ++AS   +    R   E  ++   DHP +  L       +  CL+ EY   
Sbjct: 36  TMVAVKMLKEEASADMQADFQR---EAALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAY 92

Query: 416 GDLHT-LRQRQPGKHFS----EYAARFY---------------AAEVLLALEYLHMLGVV 455
           GDL+  LR R P    S      +AR                 A +V   + YL     V
Sbjct: 93  GDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFV 152

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLS 480
           +RDL   N LV ++  + ++DF LS
Sbjct: 153 HRDLATRNCLVGENMVVKIADFGLS 177

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 327 ILGMSHFRLLKRLGCGDIGSVY----LSELSSTRCYFAMKVMDKASLASRKKLTRAQTER 382
           IL  +  + +K LG G  G+VY    + +  + +   A+KV+ + +  S K       E 
Sbjct: 3   ILKETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENT--SPKANKEILDEA 60

Query: 383 EILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEV 442
            ++  +  P++  L     T     LV +  P G L    +    +  S+     +  ++
Sbjct: 61  YVMAGVGSPYVCRLLGICLTSTVQ-LVTQLMPYGCLLDYVRENKDRIGSQDLLN-WCVQI 118

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              + YL  + +V+RDL   NVLV+   H+ ++DF L+
Sbjct: 119 AKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLA 156

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 4/143 (2%)

Query: 338 RLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLY 397
           +LG G  G VY           A+K + + ++   + L  A   +EI     HP L  L 
Sbjct: 13  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI----KHPNLVQLL 68

Query: 398 THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYR 457
                +    ++ E+   G+L    +    +  +     + A ++  A+EYL     ++R
Sbjct: 69  GVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 128

Query: 458 DLKPENVLVRDDGHIMLSDFDLS 480
           DL   N LV ++  + ++DF LS
Sbjct: 129 DLAARNCLVGENHLVKVADFGLS 151

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	730
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0695	593	consensus Serine/threonine protein kinase [Signal	100.0
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	100.0
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	100.0
KOG1290	590	consensus Serine/threonine protein kinase [Signal	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
PLN03224	507	probable serine/threonine protein kinase; Provisio	100.0
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	100.0
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG0576	829	consensus Mitogen-activated protein kinase kinase	100.0
KOG1027	903	consensus Serine/threonine protein kinase and endo	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG1167	418	consensus Serine/threonine protein kinase of the C	100.0
KOG1152	772	consensus Signal transduction serine/threonine kin	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.98
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.98
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.97
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.97
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.97
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.96
KOG3653	534	consensus Transforming growth factor beta/activin	99.96
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.96
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.96
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.96
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.94
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.94
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.93
PRK09188	365	serine/threonine protein kinase; Provisional	99.93
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.93
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.92
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.9
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.89
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.89
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.89
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.87
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.87
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.87
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.86
PRK12274	218	serine/threonine protein kinase; Provisional	99.85
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.85
PRK10345	210	hypothetical protein; Provisional	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
smart00090	237	RIO RIO-like kinase.	99.8
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.79
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.78
PRK14879	211	serine/threonine protein kinase; Provisional	99.78
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.76
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.75
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.74
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.74
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.73
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.68
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.67
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.54
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.51
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.48
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.45
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.41
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.4
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.37
KOG1243	690	consensus Protein kinase [General function predict	99.29
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.21
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.19
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.1
KOG3087	229	consensus Serine/threonine protein kinase [General	99.09
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.01
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.96
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.93
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.83
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.71
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.68
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.55
PRK09902	216	hypothetical protein; Provisional	98.53
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.49
COG4248	637	Uncharacterized protein with protein kinase and he	98.48
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.45
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.37
PF01636	239	APH: Phosphotransferase enzyme family This family	98.34
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.21
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.14
PLN02876	822	acyl-CoA dehydrogenase	98.13
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.96
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.93
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.93
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.9
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.89
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.8
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	97.74
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.67
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.6
PRK10593	297	hypothetical protein; Provisional	97.6
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.57
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.56
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.52
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.42
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.34
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.3
PRK05231	319	homoserine kinase; Provisional	97.25
KOG2270	520	consensus Serine/threonine protein kinase involved	97.2
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	97.09
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	96.85
PLN02236	344	choline kinase	96.84
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	96.68
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	96.41
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	96.28
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	96.09
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	96.04
PTZ00384	383	choline kinase; Provisional	95.93
PLN02756	418	S-methyl-5-thioribose kinase	95.9
PRK12396	409	5-methylribose kinase; Reviewed	94.91
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	94.89
PTZ00296	442	choline kinase; Provisional	94.86
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	94.7
PRK06148	1013	hypothetical protein; Provisional	94.13
COG2334	331	Putative homoserine kinase type II (protein kinase	93.65
KOG1093	725	consensus Predicted protein kinase (contains TBC a	92.93
KOG1236	565	consensus Predicted unusual protein kinase [Genera	92.7
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	92.43
PRK11768	325	serine/threonine protein kinase; Provisional	92.34

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3e-87  Score=711.71  Aligned_cols=434  Identities=69%  Similarity=1.133  Sum_probs=372.1

Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHhhhh-hcCCccccCCeEEEeEEccCCcEEEEEEEECC
Q 004790          276 ESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIR-ARDGILGMSHFRLLKRLGCGDIGSVYLSELSS  354 (730)
Q Consensus       276 ~s~~ts~s~aS~SSs~s~~s~~S~~s~s~~~p~~~~~p~~~~~~~~~-~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~  354 (730)
                      ++..++.++.+.+++.++.+++++.+....++|.+.+.+|..+..++ .+.+.+++.+|+++++||+|..|+||++++++
T Consensus        21 ~~~~~~~~~~~~s~~~~~~s~~~~~s~~~~kph~~~d~~w~a~~~~~~~~~~~l~l~~f~llk~LG~GdiG~VyL~~l~~  100 (459)
T KOG0610|consen   21 ESGKSSASSSSRSSDLSDESSLSNPSSSGNKPHKGNDVRWEAISSIRNSKDGSLGLRHFRLLKRLGCGDIGTVYLVELRG  100 (459)
T ss_pred             ccccccCCCccccCCccccccccccCcccCCCCCCCchhhhhhccccccCCCccCHHHHHHHHHcCCCCceeEEEEEecC
Confidence            33333333333455556667777777788999999999999998877 68889999999999999999999999999999


Q ss_pred             CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCccccccccCCCCccHHH
Q 004790          355 TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYA  434 (730)
Q Consensus       355 t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~  434 (730)
                      +++.+|||+|+|..+..++++.+++.|.+||+.++||++++||.+|+++.++|||||||+||+|+.++++|+++.|++..
T Consensus       101 t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~  180 (459)
T KOG0610|consen  101 TNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESA  180 (459)
T ss_pred             CCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCc
Q 004790          435 ARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPAC  514 (730)
Q Consensus       435 a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  514 (730)
                      ++||+++|+.||+|||.+||||||||||||||.++|||+|+||+|+.+|...|+++.......+..          ++.|
T Consensus       181 aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~----------~~~~  250 (459)
T KOG0610|consen  181 ARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGS----------QPSC  250 (459)
T ss_pred             HHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCC----------Cccc
Confidence            999999999999999999999999999999999999999999999999988899887654332211          3344


Q ss_pred             CCCCccccCCCCccCcccccc-cccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceee
Q 004790          515 IEPSSVCIQPACFIPRIFPQK-NKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWW  593 (730)
Q Consensus       515 ~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIW  593 (730)
                      ..     +|++||.|+.+... ++++.     +.... ..+++.+++++.+++++||||.+|+|||+|.|.+|+.++|||
T Consensus       251 ~~-----~~~s~f~~r~~~~~~~~~k~-----~~~~~-~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWW  319 (459)
T KOG0610|consen  251 RS-----RQPSCFSPRCLSSSKKRKKK-----DESAS-RSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWW  319 (459)
T ss_pred             cc-----ccccccccchhccccccccc-----ccccc-ccchhhhcCCCCccccccccccccccceeeecCCCCchhhHH
Confidence            33     47999999966443 22221     11111 567899999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          594 TFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       594 SLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      +|||+|||||+|.+||+|.++++++.+|+.+.+.||..+.++.+++|||++||++||++|++.++||+||++||||++||
T Consensus       320 tfGIflYEmLyG~TPFKG~~~~~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gVn  399 (459)
T KOG0610|consen  320 TFGIFLYEMLYGTTPFKGSNNKETLRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGVN  399 (459)
T ss_pred             HHHHHHHHHHhCCCCcCCCCchhhHHHHhcCCCcCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhcCccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhccCCCCCCCCCCCcCCC-CCCCCCCCCCCCCC--CCcccccccccCCCcccccccC
Q 004790          674 WALIRCSTPPEVPRPMEAELP-GKFGAVDPVGVSSS--SSKKIVGTDMKSGGKYLDFEFF  730 (730)
Q Consensus       674 w~~~r~~~pp~~p~p~~~~~p-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  730 (730)
                      |+++|+.+||.+|.+.+.... ...+..++......  ......-.+.+..+++.+||||
T Consensus       400 WaLir~~~PP~iP~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~F  459 (459)
T KOG0610|consen  400 WALIRCARPPEIPKPVDGGLKPHASHKSDVKGLVSKKLKNMPSKLSDDKVSENYNPFEYF  459 (459)
T ss_pred             hhheeccCCCcCCCccccCcccccccccccccccccccccccccccCCccccCCcCcccC
Confidence            999999999999999877643 11112222211110  0111122467788999999998

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-66  Score=581.58  Aligned_cols=428  Identities=32%  Similarity=0.544  Sum_probs=320.1

Q ss_pred             CCCCCCcccceeEeeccCCCCCCCCCCCCCCCccceeeeccccccccc--ccCCccccCCccccccccccCCcccCCCCc
Q 004790          198 SLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCAST--YRSDVITSDGMLSMERNCESTKGSVRGDSL  275 (730)
Q Consensus       198 ~~~~~~~~~~~c~~~~~~~~~~~~sp~~~i~s~~~~~~~~~~~~~~~~--~~~~s~~s~~~~~~~~~~~S~~~s~~~~s~  275 (730)
                      -..+||.+|..|.++||.+|..++.+.|++..+..+.+......+...  .......+   .  .........+.+.   
T Consensus       253 r~~qqGlkCs~Cg~n~H~~c~~~va~~CG~s~t~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~---  324 (694)
T KOG0694|consen  253 RLRQQGLKCSTCGRNVHNRCVENLAPNCGGSRTFSPEILEEIGTSPRAQSELKPKLPS---V--EKLFDPPQLSPRP---  324 (694)
T ss_pred             hhcccCeeehhhhccccHHHHHhcccCCCCchhhhhhhhhhcccCCCCccccCCCCcc---h--hhcccCccccCCC---
Confidence            467899999999999999999999999999988887776555411110  00000000   0  0000000000000   


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHhhhhhcCCccccCCeEEEeEEccCCcEEEEEEEECCC
Q 004790          276 ESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSST  355 (730)
Q Consensus       276 ~s~~ts~s~aS~SSs~s~~s~~S~~s~s~~~p~~~~~p~~~~~~~~~~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t  355 (730)
                         ..++..+...+    +....+............     .......+.+.+.+++|.++++||+|+||+|++++.+.+
T Consensus       325 ---~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~F~~l~vLGkGsFGkV~lae~k~~  392 (694)
T KOG0694|consen  325 ---GPPSSPASLVS----PIQESTAPEFPQPTFENS-----GPPEFPPRRGPLTLDDFRLLAVLGRGSFGKVLLAELKGT  392 (694)
T ss_pred             ---CCCCCcccccC----CcccccCCCCCCccccCC-----CcccCCCCCCcccccceEEEEEeccCcCceEEEEEEcCC
Confidence               00000000000    000000000000000000     000111122568899999999999999999999999999


Q ss_pred             CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEEeeecCCCCccccccccCCCCccHHH
Q 004790          356 RCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYA  434 (730)
Q Consensus       356 ~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~  434 (730)
                      +++||||+++|..+..++.++.++.|.+|+... +||++++||.+|++..++|+||||+.|||+..+++.   ..|++..
T Consensus       393 ~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~~~~~~---~~F~e~r  469 (694)
T KOG0694|consen  393 NEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFVMEYVAGGDLMHHIHT---DVFSEPR  469 (694)
T ss_pred             CcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEEEEEecCCCcEEEEEec---ccccHHH
Confidence            999999999999999999999999999999988 599999999999999999999999999996655443   5899999


Q ss_pred             HHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCc
Q 004790          435 ARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPAC  514 (730)
Q Consensus       435 a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  514 (730)
                      +++|+++|+.||.|||++||||||||.+|||||.+||+||+||||++..-                              
T Consensus       470 arfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m------------------------------  519 (694)
T KOG0694|consen  470 ARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGM------------------------------  519 (694)
T ss_pred             HHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccC------------------------------
Confidence            99999999999999999999999999999999999999999999984310                              


Q ss_pred             CCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeec
Q 004790          515 IEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWT  594 (730)
Q Consensus       515 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWS  594 (730)
                                                       +             ...++.+|||||.|||||+|.+..|+.++|||+
T Consensus       520 ---------------------------------~-------------~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~  553 (694)
T KOG0694|consen  520 ---------------------------------G-------------QGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWG  553 (694)
T ss_pred             ---------------------------------C-------------CCCccccccCChhhcChhhhccCcccchhhHHH
Confidence                                             0             112556899999999999999999999999999


Q ss_pred             hhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCc-hhcHHHHHcCCCCCCCC
Q 004790          595 FGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVN  673 (730)
Q Consensus       595 LG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~-~~~a~elL~HPfF~~v~  673 (730)
                      |||+|||||.|+.||.|.++.+.+..|+...+.+|.  .++.++.+++++||.+||++|++. +.++++|++||||+.||
T Consensus       554 lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~~yP~--~ls~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~i~  631 (694)
T KOG0694|consen  554 LGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPR--FLSKEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRSID  631 (694)
T ss_pred             HHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCCCCCC--cccHHHHHHHHHHhccCcccccCCCCCCchhhhhCCccccCC
Confidence            999999999999999999999999999999998886  579999999999999999999997 56799999999999999


Q ss_pred             cchh--ccCCCCCCCCCCCcCCCCCCC----CCCCCCCCCCCCcccccccccCCCcccccccC
Q 004790          674 WALI--RCSTPPEVPRPMEAELPGKFG----AVDPVGVSSSSSKKIVGTDMKSGGKYLDFEFF  730 (730)
Q Consensus       674 w~~~--r~~~pp~~p~p~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  730 (730)
                      |..+  |...||++|....++.-..|+    ..+|.- .. ...+......+  .-|.+|.|+
T Consensus       632 w~~L~~r~i~PPf~P~i~~~~D~snFd~eFt~e~p~L-t~-~~~~~l~~~~q--~~F~~Fs~~  690 (694)
T KOG0694|consen  632 WDDLLNRRIKPPFVPTIKGPEDVSNFDEEFTSEKPAL-TP-SDPRPLTEEEQ--EAFRDFSFV  690 (694)
T ss_pred             HHHHhhccCCCCCCcccCChhhhcccchhhhcCCCcc-CC-CCccccchhhH--HHhcCcccc
Confidence            9977  788999999877665443333    233331 12 22333322222  368888874

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=2.4e-66  Score=566.64  Aligned_cols=348  Identities=35%  Similarity=0.616  Sum_probs=284.3

Q ss_pred             hhhhcCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccc
Q 004790          320 AIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTH  399 (730)
Q Consensus       320 ~~~~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~  399 (730)
                      ..+.+...++.++|++++.||+|+||.||+|+.+.||.+||||+++|..+....++.+++.|+.||...++|+||+||..
T Consensus       130 ~lR~~R~r~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYs  209 (550)
T KOG0605|consen  130 YLRLRRTRLSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYS  209 (550)
T ss_pred             HHHhccccCCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEE
Confidence            35566678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccc
Q 004790          400 FETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL  479 (730)
Q Consensus       400 f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGl  479 (730)
                      |++..++||||||++|||+.++|.+.  ..|+|..+++|+++++.||+.||++|+|||||||+|+|||..|||||+||||
T Consensus       210 FQD~~~LYLiMEylPGGD~mTLL~~~--~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGL  287 (550)
T KOG0605|consen  210 FQDKEYLYLIMEYLPGGDMMTLLMRK--DTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGL  287 (550)
T ss_pred             ecCCCeeEEEEEecCCccHHHHHHhc--CcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccc
Confidence            99999999999999999999999886  7899999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCc-cCccc-ccccccccCCCCccCCCCCCCCccc
Q 004790          480 SLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACF-IPRIF-PQKNKKKTRKPRSELGLPSSTLPEL  557 (730)
Q Consensus       480 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  557 (730)
                      +.-+.-......   ...+..         ++..-.+...  ....++ .++.. .++...                 ..
T Consensus       288 s~gl~~~~~~~~---~~~~~~---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------------~~  336 (550)
T KOG0605|consen  288 STGLDKKHRIES---YRLDEQ---------MQINLSEAKP--SDFPKFNTPRSTMSRREQL-----------------QT  336 (550)
T ss_pred             cchhhhhhhhhh---hcchhh---------hhhhhccCCC--ccccccccccchhhHHHHH-----------------HH
Confidence            954321111000   000000         0000000000  000000 00000 000000                 00


Q ss_pred             ccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc--ccCCCCCCCC
Q 004790          558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ--LRFPDSPATS  635 (730)
Q Consensus       558 ~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~--~~~p~~~~~s  635 (730)
                      -.........+++|||.|||||+|.+.+|+..+||||||||+||||.|.+||.+.+..+++.+|++..  +.+|....++
T Consensus       337 w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l~fP~~~~~s  416 (550)
T KOG0605|consen  337 WKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNWRETLKFPEEVDLS  416 (550)
T ss_pred             HHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhccCCCcCccc
Confidence            01112233457899999999999999999999999999999999999999999999999999998644  8899989999


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCCcCCCCCCCCCCC
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDP  702 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~~~~p~~~~~~~~  702 (730)
                      .+++|||.+||+ ||++|++ ..+++||++||||++|+|..++...||++|..-.......|..++.
T Consensus       417 ~eA~DLI~rll~-d~~~RLG-~~G~~EIK~HPfF~~v~W~~l~~~~apfvP~v~~~~DT~yFddF~e  481 (550)
T KOG0605|consen  417 DEAKDLITRLLC-DPENRLG-SKGAEEIKKHPFFKGVDWDHLREMPAPFVPQVNSELDTQYFDDFPE  481 (550)
T ss_pred             HHHHHHHHHHhc-CHHHhcC-cccHHHHhcCCccccCCcchhhcCCCCCCCCCCCcccccccccCcc
Confidence            999999999999 9999999 6889999999999999999999999999999988877777765444

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-65  Score=539.40  Aligned_cols=292  Identities=40%  Similarity=0.725  Sum_probs=264.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|+++++||+|+||+||+++.+.|++.||||+|+|..+...+..++..+|+.||..++||+||.|+..||+...+|
T Consensus        22 ~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLy  101 (357)
T KOG0598|consen   22 VGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLY  101 (357)
T ss_pred             CChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEE
Confidence            45689999999999999999999999999999999999999988888999999999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      ||+||+.||+|+.+|+++  +.|+|..+++|+++|+.||.|||++|||||||||||||||.+|||+|+||||++...   
T Consensus       102 lVld~~~GGeLf~hL~~e--g~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~---  176 (357)
T KOG0598|consen  102 LVLDYLNGGELFYHLQRE--GRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDL---  176 (357)
T ss_pred             EEEeccCCccHHHHHHhc--CCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhcc---
Confidence            999999999999999987  789999999999999999999999999999999999999999999999999985310   


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                               .....+.
T Consensus       177 -------------------------------------------------------------------------~~~~~t~  183 (357)
T KOG0598|consen  177 -------------------------------------------------------------------------KDGDATR  183 (357)
T ss_pred             -------------------------------------------------------------------------cCCCccc
Confidence                                                                                     0111234


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      ++|||+.|||||++.+.+|+.++|||||||++|||++|.+||.+.+...++.+|..+....+. ..++.+++|||++||.
T Consensus       184 tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k~~~~p-~~ls~~ardll~~LL~  262 (357)
T KOG0598|consen  184 TFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGKLPLPP-GYLSEEARDLLKKLLK  262 (357)
T ss_pred             cccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCcCCCCC-ccCCHHHHHHHHHHhc
Confidence            689999999999999999999999999999999999999999999988888888888754443 3479999999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCcCCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEAELPGKFG  698 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~~~p~~~~  698 (730)
                      +||++|++...++.+|.+||||.++||..+  +...||+.|.-........|+
T Consensus       263 rdp~~RLg~~~d~~~ik~HpfF~~inW~~l~~k~l~PpF~P~~~~~~~~~~Fd  315 (357)
T KOG0598|consen  263 RDPRQRLGGPGDAEEIKRHPFFKGINWEKLLAKKLSPPFKPNVTGLEDTSNFD  315 (357)
T ss_pred             cCHHHhcCCCCChHHhhcCcccccCCHHHHHhcCCCCCeecCCCCcccccccc
Confidence            999999987778999999999999999976  677888888877666554443

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=2e-63  Score=510.81  Aligned_cols=276  Identities=41%  Similarity=0.782  Sum_probs=260.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ..+++|++++.||.|+||+|.+++++.++.+||||++++..+...++.++..+|..||+.+.||++++|++.|.+.+++|
T Consensus        41 ~~l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~ly  120 (355)
T KOG0616|consen   41 YSLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLY  120 (355)
T ss_pred             cchhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      |||||++||.|+.++++.  ++|++..++||++||+.||+|||+++|+||||||||||||++|++||+|||+|++..   
T Consensus       121 mvmeyv~GGElFS~Lrk~--~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~---  195 (355)
T KOG0616|consen  121 MVMEYVPGGELFSYLRKS--GRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVS---  195 (355)
T ss_pred             EEEeccCCccHHHHHHhc--CCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEec---
Confidence            999999999999998876  689999999999999999999999999999999999999999999999999996531   


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                  .++.
T Consensus       196 ----------------------------------------------------------------------------~rT~  199 (355)
T KOG0616|consen  196 ----------------------------------------------------------------------------GRTW  199 (355)
T ss_pred             ----------------------------------------------------------------------------CcEE
Confidence                                                                                        2356


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +.||||.|+|||++...+|+.++|||+|||++|||+.|.+||.+.+...++.+|+.+++.||.  ..+.+++|||++||+
T Consensus       200 TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI~~~~v~fP~--~fs~~~kdLl~~LL~  277 (355)
T KOG0616|consen  200 TLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKILEGKVKFPS--YFSSDAKDLLKKLLQ  277 (355)
T ss_pred             EecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHHHHHhCcccCCc--ccCHHHHHHHHHHHh
Confidence            789999999999999999999999999999999999999999999999999999999999995  689999999999999


Q ss_pred             CCCCCcCCc-hhcHHHHHcCCCCCCCCcchh--ccCCCCCCC
Q 004790          648 KEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCSTPPEVP  686 (730)
Q Consensus       648 ~DP~~R~t~-~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p  686 (730)
                      .|-.+|.+- ++|..+|+.||||++++|..+  |...+|.+|
T Consensus       278 vD~t~R~gnlknG~~dIk~H~wF~~v~W~~i~~r~ie~P~~p  319 (355)
T KOG0616|consen  278 VDLTKRFGNLKNGVEDIKNHPWFKGVDWEAILQRKIEPPFEP  319 (355)
T ss_pred             hhhHhhhcCcCCCccccccCcccccccHHHHhhccccCCCCC
Confidence            999999664 568999999999999999977  667788877

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-60  Score=521.27  Aligned_cols=289  Identities=38%  Similarity=0.662  Sum_probs=260.1

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccce
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRF  405 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~  405 (730)
                      .....+|.+++.||.|+|++|++|+.+.+++.|||||+.|..+..++++..+.+|.++|.+| +||.|++||..|+++..
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            45568999999999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|+|+||+++|+|..++++.  +.|++..+|+|++||+.||+|||++|||||||||||||||.|||+||+|||-|+.+..
T Consensus       149 LYFvLe~A~nGdll~~i~K~--Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~  226 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKY--GSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSP  226 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCCh
Confidence            99999999999999999987  7899999999999999999999999999999999999999999999999999976532


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ....                     |..|..+..                                          ...+
T Consensus       227 ~~~~---------------------~~~~~~~~~------------------------------------------a~s~  243 (604)
T KOG0592|consen  227 SQKS---------------------QENPVDPNQ------------------------------------------ASSR  243 (604)
T ss_pred             hhcc---------------------ccCccCccc------------------------------------------ccCc
Confidence            2111                     111111100                                          0111


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ..+||||..|.+||+|.....++.+|||+||||||+|+.|.+||.+.++..++.+|+.-.+.||.  ..+..++|||+++
T Consensus       244 ~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l~y~fp~--~fp~~a~dLv~KL  321 (604)
T KOG0592|consen  244 RSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQALDYEFPE--GFPEDARDLIKKL  321 (604)
T ss_pred             ccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhcccCCC--CCCHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999998888899988888875  6889999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCC
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP  686 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p  686 (730)
                      |+.||.+|+|    +++|++||||++|||..++.++||.+-
T Consensus       322 Lv~dp~~Rlt----~~qIk~HpFF~~Vdw~nlw~~~PP~l~  358 (604)
T KOG0592|consen  322 LVRDPSDRLT----SQQIKAHPFFEGVDWENLWQQTPPKLQ  358 (604)
T ss_pred             HccCcccccc----HHHHhhCcccccCChhhhhhcCCCccc
Confidence            9999999999    699999999999999999999988763

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-56  Score=463.87  Aligned_cols=284  Identities=37%  Similarity=0.722  Sum_probs=249.0

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDR  404 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~  404 (730)
                      +.+++.+|.++++||+|+|++|.+++++.|.+.||||+++|......+.+.-+|+|..+..+. +||++|-|+.+|+++.
T Consensus       245 ~~l~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtes  324 (593)
T KOG0695|consen  245 QGLGLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTES  324 (593)
T ss_pred             cccccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccc
Confidence            347889999999999999999999999999999999999999888888999999999998776 8999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+++|.||++||+|.-+++++  +.++|+.|++|.++|+.||.|||++|||+||||.+||||+..|||||+|+|+.+.-.
T Consensus       325 rlffvieyv~ggdlmfhmqrq--rklpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygmcke~l  402 (593)
T KOG0695|consen  325 RLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGL  402 (593)
T ss_pred             eEEEEEEEecCcceeeehhhh--hcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccchhhcCC
Confidence            999999999999999888887  689999999999999999999999999999999999999999999999999874210


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                                          +                                                        ...
T Consensus       403 --------------------~--------------------------------------------------------~gd  406 (593)
T KOG0695|consen  403 --------------------G--------------------------------------------------------PGD  406 (593)
T ss_pred             --------------------C--------------------------------------------------------CCc
Confidence                                0                                                        011


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCC-------CCCccceee-eecccccCCCCCCCCh
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKG-------SGNRATLFN-VVGQQLRFPDSPATSY  636 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g-------~~~~~~l~~-i~~~~~~~p~~~~~s~  636 (730)
                      .+.+|||||.|+|||+|+|..|++.+|||+|||++|||+.|+.||.-       .+..+.+++ |+..++++|.  .+|-
T Consensus       407 ~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqiripr--slsv  484 (593)
T KOG0695|consen  407 TTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQIRIPR--SLSV  484 (593)
T ss_pred             ccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhcccccc--eeeh
Confidence            23578999999999999999999999999999999999999999963       223455555 4567788875  4566


Q ss_pred             hHHHHHHhhhcCCCCCcCCch--hcHHHHHcCCCCCCCCcchhc--cCCCCCCCCCC
Q 004790          637 ASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIR--CSTPPEVPRPM  689 (730)
Q Consensus       637 ~~~dLI~~lL~~DP~~R~t~~--~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p~  689 (730)
                      .+..+++..|.+||.+|+++.  -+.++++.|+||+.++|..+.  .-.||+.|...
T Consensus       485 kas~vlkgflnkdp~erlgc~~~~g~~dik~h~ffr~idwd~leqk~v~ppf~p~i~  541 (593)
T KOG0695|consen  485 KASHVLKGFLNKDPKERLGCRPQTGFSDIKSHAFFRSIDWDLLEQKQVLPPFQPQIT  541 (593)
T ss_pred             hhHHHHHHhhcCCcHHhcCCCcccchhhhhcchhhhhCCHHHHhhcccCCCCCCccc
Confidence            777899999999999999985  478999999999999999883  44566666543

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.3e-56  Score=489.48  Aligned_cols=370  Identities=32%  Similarity=0.558  Sum_probs=297.1

Q ss_pred             hhhcCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 004790          321 IRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF  400 (730)
Q Consensus       321 ~~~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f  400 (730)
                      ++++.....-+.|..++.||-|+||.|.+++..+|..+||||.++|.....++++.++..|++||...+.++||+||..|
T Consensus       619 iRLkRaKMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySF  698 (1034)
T KOG0608|consen  619 IRLKRAKMDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSF  698 (1034)
T ss_pred             HHHHHhhccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEe
Confidence            34455556678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          401 ETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       401 ~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      ++++++|+||+|++|||+..||.+.  +.|.|..|+||++++..|+++.|..|+|||||||+|||||.+|||||+||||.
T Consensus       699 QDkdnLYFVMdYIPGGDmMSLLIrm--gIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLC  776 (1034)
T KOG0608|consen  699 QDKDNLYFVMDYIPGGDMMSLLIRM--GIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLC  776 (1034)
T ss_pred             ccCCceEEEEeccCCccHHHHHHHh--ccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeecccc
Confidence            9999999999999999999988876  78999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccc-cCCCCccCcccccccccccCCCCccCCCCCCCCccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVC-IQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVA  559 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (730)
                      +-+.+..+.-.-          + .|.+.-|. ++++..-. -...|  .+.+......++                   
T Consensus       777 TGfRWTHdskYY----------q-~gdH~RqD-Smep~~e~~d~~~~--lkvL~~ra~~~h-------------------  823 (1034)
T KOG0608|consen  777 TGFRWTHDSKYY----------Q-EGDHHRQD-SMEPSPEWADISKC--LKVLERRAMRQH-------------------  823 (1034)
T ss_pred             ccceeccccccc----------c-CCCccccc-cCCCchhhcccccc--chHHHHHHHhhh-------------------
Confidence            776654432110          0 12222222 22222110 00011  111211100111                   


Q ss_pred             ccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec--ccccCCCCCCCChh
Q 004790          560 EPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQLRFPDSPATSYA  637 (730)
Q Consensus       560 e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~--~~~~~p~~~~~s~~  637 (730)
                        ......+.|||+.|+|||+|...+|+..+||||.|||||||+.|++||-.....++..+|++  ..+.++....++.+
T Consensus       824 --~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq~kv~nw~~~l~~~~~~~ls~e  901 (1034)
T KOG0608|consen  824 --QRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQYKVINWRNFLHIPYQGNLSKE  901 (1034)
T ss_pred             --hhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCcceeeeeehhhccccccccccCHH
Confidence              11223467999999999999999999999999999999999999999999988888888775  45677777889999


Q ss_pred             HHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccc
Q 004790          638 SRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVSSSSSKKIVGTD  717 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  717 (730)
                      +.+||++|. .++++|++ +.++++++.||||++|||..+|.+..|.+|+...+.....|+.+|+-..++..+......+
T Consensus       902 ~~~li~kLc-~sad~RLG-kng~d~vKaHpfFkgIDfsslRkq~ApYIP~ItHptDTSNFdpvdpeklwnddses~~~~~  979 (1034)
T KOG0608|consen  902 ALDLIQKLC-CSADSRLG-KNGADQVKAHPFFKGIDFSSLRKQRAPYIPRITHPTDTSNFDPVDPEKLWNDDSESPNVRD  979 (1034)
T ss_pred             HHHHHHHHh-cChhhhhc-ccchhhhhcCccccccchHhhhhccCCcCccccCCCccccCCcCCccccccccccCCCccc
Confidence            999999975 47999999 5788999999999999999999999999999999998889999999544433322222222


Q ss_pred             ccC---CCccccccc
Q 004790          718 MKS---GGKYLDFEF  729 (730)
Q Consensus       718 ~~~---~~~~~~~~~  729 (730)
                      ...   .-.|++|-|
T Consensus       980 ~~nkhpehaFyEFTf  994 (1034)
T KOG0608|consen  980 TLNKHPEHAFYEFTF  994 (1034)
T ss_pred             ccccCCccceeEeee
Confidence            222   346778765

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.8e-57  Score=478.55  Aligned_cols=261  Identities=30%  Similarity=0.467  Sum_probs=228.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhh----HHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS----RKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~----~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      .+.|.+.+.||+|+||.|-+|..+.|++.||||++++.....    ......+++|++||+.|+|||||+++++|+....
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds  250 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDS  250 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence            467889999999999999999999999999999999876544    2244557899999999999999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC---CceEEeccccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD---GHIMLSDFDLSLR  482 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~---g~vKL~DFGlA~~  482 (730)
                      .||||||+.||+|.+.+-..  +.+.|...+.|++||+.||.|||++||+||||||+|||+..+   ..+||+|||+|+.
T Consensus       251 ~YmVlE~v~GGeLfd~vv~n--k~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~  328 (475)
T KOG0615|consen  251 SYMVLEYVEGGELFDKVVAN--KYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKV  328 (475)
T ss_pred             eEEEEEEecCccHHHHHHhc--cccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhc
Confidence            99999999999999977765  789999999999999999999999999999999999999766   7899999999954


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ..                                                                             .
T Consensus       329 ~g-----------------------------------------------------------------------------~  331 (475)
T KOG0615|consen  329 SG-----------------------------------------------------------------------------E  331 (475)
T ss_pred             cc-----------------------------------------------------------------------------c
Confidence            21                                                                             1


Q ss_pred             cccccccccCcccCChhhhccCCC---CCcceeechhHHHHHHhhCCCCCCCCCCcc-ceeeeecccccC--CCCCCCCh
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGH---GSAVDWWTFGIFLHELLYGKTPFKGSGNRA-TLFNVVGQQLRF--PDSPATSY  636 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~---~~~sDIWSLG~iLyELltG~~PF~g~~~~~-~l~~i~~~~~~~--p~~~~~s~  636 (730)
                      ...+.++||||.|.|||+|.+.++   ..++|||||||+||-+|+|.+||.+..... ....|..+.+.|  +.|..++.
T Consensus       332 ~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Ise  411 (475)
T KOG0615|consen  332 GSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISE  411 (475)
T ss_pred             ceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhhhhH
Confidence            123457899999999999998764   458899999999999999999998876555 455677777665  45678899


Q ss_pred             hHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          637 ASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       637 ~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      +++|||.+||..||++|++    ++|+|+||||+.+.
T Consensus       412 ea~dlI~~mL~VdP~~R~s----~~eaL~hpW~~~~~  444 (475)
T KOG0615|consen  412 EALDLINWMLVVDPENRPS----ADEALNHPWFKDAP  444 (475)
T ss_pred             HHHHHHHHhhEeCcccCcC----HHHHhcChhhhccc
Confidence            9999999999999999999    79999999999766

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.6e-56  Score=494.43  Aligned_cols=256  Identities=31%  Similarity=0.540  Sum_probs=241.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      .+|...+.||+|+|++||.+++..+|..||+|++.|..+......+++.+|++|.+.|+|||||++|++|++.+++|||+
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            56999999999999999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |+|..++|..++++.  +.++|.+|++|++||+.||.|||+++|||||||..|+||+.+.+|||+|||||.++.      
T Consensus        98 ELC~~~sL~el~Krr--k~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le------  169 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRR--KPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLE------  169 (592)
T ss_pred             EecCCccHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeec------
Confidence            999999999998855  789999999999999999999999999999999999999999999999999996532      


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                            ....+.+++|
T Consensus       170 ----------------------------------------------------------------------~~~Erk~TlC  179 (592)
T KOG0575|consen  170 ----------------------------------------------------------------------YDGERKKTLC  179 (592)
T ss_pred             ----------------------------------------------------------------------Ccccccceec
Confidence                                                                                  1224557899


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      |||.|+|||++...+|+..+||||+||+||.||+|++||...+-.+++.+|....+.+|.  .++.+++|||.+||..||
T Consensus       180 GTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~--~ls~~A~dLI~~lL~~~P  257 (592)
T KOG0575|consen  180 GTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPS--HLSAEAKDLIRKLLRPNP  257 (592)
T ss_pred             CCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCccccc--ccCHHHHHHHHHHhcCCc
Confidence            999999999999999999999999999999999999999998888999999999999987  689999999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF~  670 (730)
                      .+||+    +++||.|+||.
T Consensus       258 ~~Rps----l~~vL~h~Ff~  273 (592)
T KOG0575|consen  258 SERPS----LDEVLDHPFFK  273 (592)
T ss_pred             ccCCC----HHHHhcCHhhh
Confidence            99999    79999999993

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-57  Score=521.32  Aligned_cols=298  Identities=38%  Similarity=0.692  Sum_probs=267.3

Q ss_pred             hcCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          323 ARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       323 ~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      .+.-.+.-++|.++++||+|+||.|.+++++.|++.||||+++|-.+..+..-..+..|++||...+.++|++|+..|++
T Consensus        67 v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD  146 (1317)
T KOG0612|consen   67 VKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQD  146 (1317)
T ss_pred             HHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC
Confidence            33445667899999999999999999999999999999999999877766777889999999999999999999999999


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      ++++|||||||+||||..++.+.  ..++|..|+||+++|+.||.-||+.|+|||||||+|||||..|||||+|||.+.+
T Consensus       147 ~~~LYlVMdY~pGGDlltLlSk~--~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClk  224 (1317)
T KOG0612|consen  147 ERYLYLVMDYMPGGDLLTLLSKF--DRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLK  224 (1317)
T ss_pred             ccceEEEEecccCchHHHHHhhc--CCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHh
Confidence            99999999999999999999987  3799999999999999999999999999999999999999999999999998754


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      +..+                                                                           .
T Consensus       225 m~~d---------------------------------------------------------------------------G  229 (1317)
T KOG0612|consen  225 MDAD---------------------------------------------------------------------------G  229 (1317)
T ss_pred             cCCC---------------------------------------------------------------------------C
Confidence            3210                                                                           1


Q ss_pred             cccccccccCcccCChhhhcc-----CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc--cccCCCCCCCC
Q 004790          563 AARSMSFVGTHEYLAPEIIKG-----EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--QLRFPDSPATS  635 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g-----~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~--~~~~p~~~~~s  635 (730)
                      ..++...||||.|++||+|..     ..||..+|||||||++|||++|.+||+...-.+++-+|++.  .+.||+...+|
T Consensus       230 ~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm~hk~~l~FP~~~~VS  309 (1317)
T KOG0612|consen  230 TVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIMNHKESLSFPDETDVS  309 (1317)
T ss_pred             cEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHhchhhhcCCCcccccC
Confidence            234455699999999999963     35899999999999999999999999999888899888875  78889778899


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCCcCCCCCCCC
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGA  699 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~~~~p~~~~~  699 (730)
                      .+++|||.++|+ +|+.|++ ++|++++..||||.+++|..||...||.+|.-.-+.....|+.
T Consensus       310 eeakdLI~~ll~-~~e~RLg-rngiedik~HpFF~g~~W~~iR~~~pP~vPevssd~DTsnFd~  371 (1317)
T KOG0612|consen  310 EEAKDLIEALLC-DREVRLG-RNGIEDIKNHPFFEGIDWDNIRESVPPVVPEVSSDDDTSNFDV  371 (1317)
T ss_pred             HHHHHHHHHHhc-Chhhhcc-cccHHHHHhCccccCCChhhhhhcCCCCCCcCCCCCccccccc
Confidence            999999999986 6999999 5788999999999999999999999999999877777666643

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-57  Score=478.03  Aligned_cols=285  Identities=35%  Similarity=0.650  Sum_probs=258.6

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccce
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRF  405 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~  405 (730)
                      .+...+|.++.+||+|+||+|.+|+.+++...||||+++|+.+.....++..+.|.++|.+. +-|++++|+.+|++-+.
T Consensus       345 ~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDR  424 (683)
T KOG0696|consen  345 RIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDR  424 (683)
T ss_pred             ceeecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhh
Confidence            56678999999999999999999999999999999999999988888889999999999988 56799999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|+||||+.||||...++..  +.|.|..|.+|+++|+-||-|||++|||+||||.+|||++.+|||||+|||+++.-. 
T Consensus       425 LyFVMEyvnGGDLMyhiQQ~--GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni-  501 (683)
T KOG0696|consen  425 LYFVMEYVNGGDLMYHIQQV--GKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI-  501 (683)
T ss_pred             eeeEEEEecCchhhhHHHHh--cccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeecccccccc-
Confidence            99999999999999988866  789999999999999999999999999999999999999999999999999974210 


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                                                                                               .  ....
T Consensus       502 -------------------------------------------------------------------------~--~~~T  506 (683)
T KOG0696|consen  502 -------------------------------------------------------------------------F--DGVT  506 (683)
T ss_pred             -------------------------------------------------------------------------c--CCcc
Confidence                                                                                     0  1123


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      +.+|||||.|+|||++...+|+..+||||+||+|||||.|++||.|.++.+.+.+|......+|.  .+|.++.+++..+
T Consensus       507 TkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI~ehnvsyPK--slSkEAv~ickg~  584 (683)
T KOG0696|consen  507 TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAIMEHNVSYPK--SLSKEAVAICKGL  584 (683)
T ss_pred             eeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHccCcCcc--cccHHHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999888888889888888886  5799999999999


Q ss_pred             hcCCCCCcCCch-hcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCc
Q 004790          646 LVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEA  691 (730)
Q Consensus       646 L~~DP~~R~t~~-~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~  691 (730)
                      |.+.|.+|++.- .+-++|..||||+.|||..+  +...||+.|.+-..
T Consensus       585 ltK~P~kRLGcg~~ge~di~~H~FFR~iDWek~E~~eiqPPfkPk~k~~  633 (683)
T KOG0696|consen  585 LTKHPGKRLGCGPEGERDIREHPFFRRIDWEKLERREIQPPFKPKIKCG  633 (683)
T ss_pred             hhcCCccccCCCCccccchhhCcchhhccHHHHhhccCCCCCCCccccC
Confidence            999999999983 56789999999999999987  56788888887433

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-56  Score=460.18  Aligned_cols=291  Identities=37%  Similarity=0.658  Sum_probs=262.4

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .+.+++|..+++||+|.||+|.+++.+.++++||||+++|..+..+..+.+..+|-++|+..+||++..|...|++.+.+
T Consensus       164 kvTm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drl  243 (516)
T KOG0690|consen  164 KVTMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRL  243 (516)
T ss_pred             eeccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceE
Confidence            46789999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||++||+|+.++.+.  +.|+|..+++|.++|+.||.|||+++||+||||.+|+|+|.||||||+||||.+.-.  
T Consensus       244 CFVMeyanGGeLf~HLsre--r~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I--  319 (516)
T KOG0690|consen  244 CFVMEYANGGELFFHLSRE--RVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEI--  319 (516)
T ss_pred             EEEEEEccCceEeeehhhh--hcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchhcc--
Confidence            9999999999999988875  789999999999999999999999999999999999999999999999999974210  


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                .....+
T Consensus       320 --------------------------------------------------------------------------~~g~t~  325 (516)
T KOG0690|consen  320 --------------------------------------------------------------------------KYGDTT  325 (516)
T ss_pred             --------------------------------------------------------------------------ccccee
Confidence                                                                                      011234


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      .+|||||.|+|||+|....|+.++|||.+||++|||++|+.||...+....+.-|+.+.++||.  .++++++.|+.++|
T Consensus       326 kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~ed~kFPr--~ls~eAktLLsGLL  403 (516)
T KOG0690|consen  326 KTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILMEDLKFPR--TLSPEAKTLLSGLL  403 (516)
T ss_pred             ccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHhhhccCCc--cCCHHHHHHHHHHh
Confidence            5799999999999999999999999999999999999999999998777777778888999985  58999999999999


Q ss_pred             cCCCCCcCCc-hhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCcCCCCCC
Q 004790          647 VKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEAELPGKF  697 (730)
Q Consensus       647 ~~DP~~R~t~-~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~~~p~~~  697 (730)
                      .+||.+|++- .+.|.||.+|+||.+|||...  +...||+.|.-........|
T Consensus       404 ~kdP~kRLGgGpdDakEi~~h~FF~~v~W~~~~~Kki~PPfKPqVtSetDTryF  457 (516)
T KOG0690|consen  404 KKDPKKRLGGGPDDAKEIMRHRFFASVDWEATYRKKIEPPFKPQVTSETDTRYF  457 (516)
T ss_pred             hcChHhhcCCCchhHHHHHhhhhhccCCHHHHHHhccCCCCCCCcccccchhhh
Confidence            9999999996 467999999999999999865  56778888876544444433

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-53  Score=456.01  Aligned_cols=286  Identities=35%  Similarity=0.614  Sum_probs=255.3

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      ..+.++.|+.-++||+|+||.||-++.+.||+.||+|.+.|..+..++....+..|..||.+++.++||.|-..|++.+.
T Consensus       180 qpvt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~  259 (591)
T KOG0986|consen  180 QPVTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDA  259 (591)
T ss_pred             hhccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCc
Confidence            44678899999999999999999999999999999999999988888888889999999999999999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +||||..|+||||..+|.+.....|+|..++||++||+.||++||..+||||||||+|||+|+.|||+|+|+|||..+..
T Consensus       260 LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~  339 (591)
T KOG0986|consen  260 LCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPE  339 (591)
T ss_pred             eEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecCC
Confidence            99999999999999999888777899999999999999999999999999999999999999999999999999954210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                                                                                                   ...
T Consensus       340 -----------------------------------------------------------------------------g~~  342 (591)
T KOG0986|consen  340 -----------------------------------------------------------------------------GKP  342 (591)
T ss_pred             -----------------------------------------------------------------------------CCc
Confidence                                                                                         001


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccce----eeeecccccCCCCCCCChhHHHH
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL----FNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l----~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      ....+||.+|||||++....|+..+|||||||+||||+.|+.||.........    .+++.....++  ...|.++++|
T Consensus       343 ~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~~ey~--~kFS~eaksl  420 (591)
T KOG0986|consen  343 IRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDPEEYS--DKFSEEAKSL  420 (591)
T ss_pred             cccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcchhhcc--cccCHHHHHH
Confidence            12238999999999999999999999999999999999999999876544332    23445555566  4689999999


Q ss_pred             HHhhhcCCCCCcCCch-hcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCC
Q 004790          642 IRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCSTPPEVPRPME  690 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~-~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~  690 (730)
                      .+.+|++||.+|++++ ++++++++||||+++||..+  ....||++|.|.+
T Consensus       421 c~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~lnw~rleagml~PPfiPdp~a  472 (591)
T KOG0986|consen  421 CEGLLTKDPEKRLGCRGEGAQEVKEHPFFKDLNWRRLEAGMLEPPFIPDPGA  472 (591)
T ss_pred             HHHHHccCHHHhccCCCcCcchhhhCcccccCCHhHHhccCCCCCCCCCccc
Confidence            9999999999999997 78999999999999999977  5778999998764

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-53  Score=446.88  Aligned_cols=259  Identities=31%  Similarity=0.475  Sum_probs=225.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc-ee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR-FS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~-~l  406 (730)
                      +..++.+.++.||+|..|+||+++|+.|++.+|+|++...  .+....+++.+|++||+.++|||||.+|++|..+. .+
T Consensus        76 i~~~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~--~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~i  153 (364)
T KOG0581|consen   76 ISLSDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLN--IDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEI  153 (364)
T ss_pred             cCHHHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeeccc--CCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceE
Confidence            4456788899999999999999999999999999999432  33456677899999999999999999999999988 49


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccccccccC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|+||||+||+|..++...  ++++|.....++.+|+.||.|||. ++||||||||+||||+..|.|||||||.++.+..
T Consensus       154 sI~mEYMDgGSLd~~~k~~--g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvn  231 (364)
T KOG0581|consen  154 SICMEYMDGGSLDDILKRV--GRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVN  231 (364)
T ss_pred             EeehhhcCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHhhh
Confidence            9999999999999988876  689999999999999999999995 9999999999999999999999999999854321


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      +                                                                              -
T Consensus       232 S------------------------------------------------------------------------------~  233 (364)
T KOG0581|consen  232 S------------------------------------------------------------------------------I  233 (364)
T ss_pred             h------------------------------------------------------------------------------h
Confidence            0                                                                              1


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCC-----CCccceeeeeccc-ccCCCCCCCChhHH
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGS-----GNRATLFNVVGQQ-LRFPDSPATSYASR  639 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~-----~~~~~l~~i~~~~-~~~p~~~~~s~~~~  639 (730)
                      ..+|+||..|||||.+.+..|+.++||||||++|+||++|+.||...     +..+.+..|+.+. .++|.. .+|.+++
T Consensus       234 a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~~-~fS~ef~  312 (364)
T KOG0581|consen  234 ANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRLPEG-EFSPEFR  312 (364)
T ss_pred             cccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCcc-cCCHHHH
Confidence            24689999999999999999999999999999999999999999875     2224444566543 344443 6899999


Q ss_pred             HHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          640 DLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      +||..||.+||.+|++    +.|+++|||++...
T Consensus       313 ~FV~~CL~Kdp~~R~s----~~qLl~Hpfi~~~~  342 (364)
T KOG0581|consen  313 SFVSCCLRKDPSERPS----AKQLLQHPFIKKFE  342 (364)
T ss_pred             HHHHHHhcCCcccCCC----HHHHhcCHHHhhcc
Confidence            9999999999999999    89999999998643

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=1.5e-50  Score=444.60  Aligned_cols=339  Identities=33%  Similarity=0.560  Sum_probs=249.7

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|+++++||+|+||+||+|++..+++.||||++.+...........+.+|+++|+.++||||+++++.|+++..+||||
T Consensus         1 ~~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~   80 (382)
T cd05625           1 SMFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVM   80 (382)
T ss_pred             CCcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEE
Confidence            36999999999999999999999999999999998876656667788999999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |||+||+|..++.+.  +.+++..++.|+.||+.||+|||++|||||||||+|||++.+|++||+|||++..+.......
T Consensus        81 E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~  158 (382)
T cd05625          81 DYIPGGDMMSLLIRM--GIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSK  158 (382)
T ss_pred             eCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCcccccccccc
Confidence            999999999988765  578999999999999999999999999999999999999999999999999985432111100


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCccccccccccc-CCCCccCCCCCCCCccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKT-RKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                      ...           .+.... ...               ..+........ ........ +...  ............+.
T Consensus       159 ~~~-----------~~~~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~  208 (382)
T cd05625         159 YYQ-----------SGDHVR-QDS---------------MDFSNEWGDPANCRCGDRLK-PLER--RAARQHQRCLAHSL  208 (382)
T ss_pred             ccc-----------cccccc-ccc---------------cccccccccccccccccccc-chhh--hhcccccccccccc
Confidence            000           000000 000               00000000000 00000000 0000  00000011123457


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec--ccccCCCCCCCChhHHHHHHhhhc
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~--~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +||+.|+|||++.+..|+.++|||||||+||||++|+.||.+.+......++..  ..+.+|....++.++.+||.+|+ 
T Consensus       209 ~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-  287 (382)
T cd05625         209 VGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQMKVINWQTSLHIPPQAKLSPEASDLIIKLC-  287 (382)
T ss_pred             ccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCCHHHHHHHHHccCCCcCCCCcccCCHHHHHHHHHHc-
Confidence            899999999999999999999999999999999999999998766555555543  33455555678999999999986 


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCCCCcch-hccCCCCCCCCCCCcCCCCCCCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEGVNWAL-IRCSTPPEVPRPMEAELPGKFGAVDPV  703 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~v~w~~-~r~~~pp~~p~p~~~~~p~~~~~~~~~  703 (730)
                      .||.+|++ ...++++++||||++++|.. ++...+|..|....+.....|...++.
T Consensus       288 ~~p~~R~~-~~~~~ei~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (382)
T cd05625         288 RGPEDRLG-KNGADEIKAHPFFKTIDFSSDLRQQSAPYIPKITHPTDTSNFDPVDPD  343 (382)
T ss_pred             cCHhHcCC-CCCHHHHhcCCCcCCcChHHHHhcCCCCccCcCCCcchhhhcCCCCcc
Confidence            59999998 34579999999999999985 455566666665554444445554443

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-51  Score=438.19  Aligned_cols=258  Identities=29%  Similarity=0.516  Sum_probs=224.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      ..+|.+.++||.|+||+||+|+++.++..||||.|.+..+ ..+.++.+..|+.||+.++|||||+|++++++++++|||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l-~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lV   87 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKL-NKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLV   87 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhcc-CHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEE
Confidence            4689999999999999999999999999999999998865 456778899999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC------CceEEecccccccc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD------GHIMLSDFDLSLRC  483 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~------g~vKL~DFGlA~~~  483 (730)
                      ||||+||||..++++.  +.++|..++.++.||+.||++||+++||||||||+||||...      -.+||+|||+|+.+
T Consensus        88 MEyC~gGDLs~yi~~~--~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L  165 (429)
T KOG0595|consen   88 MEYCNGGDLSDYIRRR--GRLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFL  165 (429)
T ss_pred             EEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhC
Confidence            9999999999999886  689999999999999999999999999999999999999764      46899999999754


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ...                                                                             
T Consensus       166 ~~~-----------------------------------------------------------------------------  168 (429)
T KOG0595|consen  166 QPG-----------------------------------------------------------------------------  168 (429)
T ss_pred             Cch-----------------------------------------------------------------------------
Confidence            210                                                                             


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCC-CCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS-PATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~-~~~s~~~~dLI  642 (730)
                      ....+.||+|.|||||++....|+.|+|+||+|+|||+|++|++||...+..+.+..+-.+....|.. ...+...++|+
T Consensus       169 ~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~~~~~~~~~~~~s~~~~~Ll  248 (429)
T KOG0595|consen  169 SMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKELLLYIKKGNEIVPVLPAELSNPLRELL  248 (429)
T ss_pred             hHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhccccccCchhhhccCchhhhh
Confidence            01125799999999999999999999999999999999999999999887766665544433333322 34566778999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ..+|..+|.+|.++    .+.+.|+|...
T Consensus       249 ~~ll~~~~~~~~~~----~~~~~~~~l~~  273 (429)
T KOG0595|consen  249 ISLLQRNPKDRISF----EDFFDHPFLAA  273 (429)
T ss_pred             hHHHhcCccccCch----HHhhhhhhccc
Confidence            99999999999994    77888888764

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=2.8e-50  Score=439.82  Aligned_cols=308  Identities=33%  Similarity=0.580  Sum_probs=238.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||+||+|+++.+++.||||++++...........+++|+.+++.++||||+++++.|+++..+||||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            47999999999999999999999999999999998876666666778899999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |||+||+|..++.+.  +.+++..++.|+.||+.||+|||++||+||||||+||||+.+|++||+|||+++.+.......
T Consensus        81 E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~  158 (363)
T cd05628          81 EFLPGGDMMTLLMKK--DTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTE  158 (363)
T ss_pred             cCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCccccccccccc
Confidence            999999999988765  579999999999999999999999999999999999999999999999999986542110000


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                      ..        ..   ...                  ..+.-+........+.  .          +...........+.+
T Consensus       159 ~~--------~~---~~~------------------~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~  197 (363)
T cd05628         159 FY--------RN---LNH------------------SLPSDFTFQNMNSKRK--A----------ETWKRNRRQLAFSTV  197 (363)
T ss_pred             cc--------cc---ccc------------------cccccccccccccccc--c----------chhhhcccccccccc
Confidence            00        00   000                  0000000000000000  0          000000111224578


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec--ccccCCCCCCCChhHHHHHHhhhcC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~--~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      ||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+.++..  ..+.+|....++.++++||.+|+. 
T Consensus       198 Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~-  276 (363)
T cd05628         198 GTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNWKETLIFPPEVPISEKAKDLILRFCC-  276 (363)
T ss_pred             CCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCcCcccCCCcCCCCHHHHHHHHHHcC-
Confidence            99999999999999999999999999999999999999998776666666654  345566666678999999999886 


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCCCCcchhccCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPP  683 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp  683 (730)
                      +|.+|++ +..++||++||||++++|..++...++
T Consensus       277 ~~~~r~~-r~~~~ei~~hp~f~~~~~~~~~~~~~~  310 (363)
T cd05628         277 EWEHRIG-APGVEEIKTNPFFEGVDWEHIRERPAA  310 (363)
T ss_pred             ChhhcCC-CCCHHHHhCCCCCCCCCHHHHHhCCCC
Confidence            6676643 123799999999999999998755433

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=5.7e-50  Score=440.38  Aligned_cols=324  Identities=34%  Similarity=0.561  Sum_probs=239.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +.|++++.||+|+||+||+|+++.+++.||||++.+...........+.+|+++|+.++||||++++++|+++..+|+||
T Consensus         1 ~~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~   80 (381)
T cd05626           1 SMFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (381)
T ss_pred             CCceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEE
Confidence            36999999999999999999999999999999998876666667788999999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |||+||+|..++.+.  ..+++..++.|++||+.||+|||++||+||||||+||||+.+|++||+|||++..+.......
T Consensus        81 E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~  158 (381)
T cd05626          81 DYIPGGDMMSLLIRM--EVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSK  158 (381)
T ss_pred             ecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCcccccccccc
Confidence            999999999988765  568999999999999999999999999999999999999999999999999985432111000


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCcccc-CCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCI-QPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                      .   ..        .+....+. -..+...+. ...|......         .   ....      ............++
T Consensus       159 ~---~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~---~~~~------~~~~~~~~~~~~~~  208 (381)
T cd05626         159 Y---YQ--------KGSHIRQD-SMEPSDLWDDVSNCRCGDRL---------K---TLEQ------RATKQHQRCLAHSL  208 (381)
T ss_pred             c---cc--------cccccccc-ccCccccccccccccccccc---------c---hhhc------cccccccccccccc
Confidence            0   00        00000000 000000000 0000000000         0   0000      00000111123467


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec--ccccCCCCCCCChhHHHHHHhhhc
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~--~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+......+++.  ....+|....++.++++||.+||.
T Consensus       209 ~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~  288 (381)
T cd05626         209 VGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVINWENTLHIPPQVKLSPEAVDLITKLCC  288 (381)
T ss_pred             cCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCHHHHHHHHHccccccCCCCCCCCCHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999988765555444442  334556556689999999999775


Q ss_pred             C--CCCCcCCchhcHHHHHcCCCCCCCCcchh-ccCCCCCCCCCCC
Q 004790          648 K--EPQHRLGVKRGATEIKQHPFFEGVNWALI-RCSTPPEVPRPME  690 (730)
Q Consensus       648 ~--DP~~R~t~~~~a~elL~HPfF~~v~w~~~-r~~~pp~~p~p~~  690 (730)
                      .  ++..|++    ++++++||||++++|... +...+|.+|....
T Consensus       289 ~~~~~~~R~~----~~~~l~hp~f~~~~~~~~~~~~~~~~~p~~~~  330 (381)
T cd05626         289 SAEERLGRNG----ADDIKAHPFFSEVDFSSDIRTQPAPYVPKISH  330 (381)
T ss_pred             CcccccCCCC----HHHHhcCcccCCCChhHHhhcCCCCccCcCCC
Confidence            5  4445998    799999999999999764 4445555555433

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=2.6e-50  Score=434.35  Aligned_cols=268  Identities=36%  Similarity=0.731  Sum_probs=235.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +.+++|++++.||+|+||.||+|+++.+++.||+|++.+...........+.+|+.+|+.++||||++++++|.+++.+|
T Consensus        15 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   94 (329)
T PTZ00263         15 WKLSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVY   94 (329)
T ss_pred             CCchheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEE
Confidence            44688999999999999999999999999999999998876555566678899999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||++||+|..++...  +.+++..++.++.||+.||+|||++||+||||||+||||+.+|++||+|||++.....  
T Consensus        95 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~--  170 (329)
T PTZ00263         95 FLLEFVVGGELFTHLRKA--GRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPD--  170 (329)
T ss_pred             EEEcCCCCChHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEcCC--
Confidence            999999999999887764  5789999999999999999999999999999999999999999999999999843100  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                   ...
T Consensus       171 -----------------------------------------------------------------------------~~~  173 (329)
T PTZ00263        171 -----------------------------------------------------------------------------RTF  173 (329)
T ss_pred             -----------------------------------------------------------------------------Ccc
Confidence                                                                                         011


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +.+||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+..+..+.+.+|.  .++..+++||++||.
T Consensus       174 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~~L~  251 (329)
T PTZ00263        174 TLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRLKFPN--WFDGRARDLVKGLLQ  251 (329)
T ss_pred             eecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCcCCCC--CCCHHHHHHHHHHhh
Confidence            347999999999999999999999999999999999999999887666666666666655554  478899999999999


Q ss_pred             CCCCCcCCc-hhcHHHHHcCCCCCCCCcchhc
Q 004790          648 KEPQHRLGV-KRGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       648 ~DP~~R~t~-~~~a~elL~HPfF~~v~w~~~r  678 (730)
                      .||.+|++. +..++++++||||++++|..+.
T Consensus       252 ~dP~~R~~~~~~~~~~ll~hp~f~~~~~~~~~  283 (329)
T PTZ00263        252 TDHTKRLGTLKGGVADVKNHPYFHGANWDKLY  283 (329)
T ss_pred             cCHHHcCCCCCCCHHHHhcCCccCCCCHHHHH
Confidence            999999973 3457999999999999999763

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-50  Score=438.40  Aligned_cols=319  Identities=36%  Similarity=0.641  Sum_probs=244.7

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||+||+|++..+++.||||++.+...........+++|+++|+.++||||++++++|+++..+||||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            47999999999999999999999999999999998876555566777899999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |||+||+|.+++...  ..+++..++.|+.||+.||+|||++||+||||||+|||++.+|.+||+|||++..+.......
T Consensus        81 E~~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~  158 (364)
T cd05599          81 EYLPGGDMMTLLMKK--DTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTE  158 (364)
T ss_pred             CCCCCcHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceecccccccc
Confidence            999999999988764  579999999999999999999999999999999999999999999999999986532111000


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                      .......    .            . +...    ..+....+...  ..               .............+.+
T Consensus       159 ~~~~~~~----~------------~-~~~~----~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~  200 (364)
T cd05599         159 FYRILSH----A------------L-PSNF----LDFISKPMSSK--RK---------------AETWKRNRRALAYSTV  200 (364)
T ss_pred             ccccccc----c------------c-cccc----ccccccccccc--cc---------------ccchhhcccccccccc
Confidence            0000000    0            0 0000    00000000000  00               0000000111223568


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc--cccCCCCCCCChhHHHHHHhhhcC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--QLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~--~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      ||+.|+|||++.+..++.++|||||||++|||++|..||.+.+....+.++...  .+.+|....++.++++||++||. 
T Consensus       201 gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~ll~-  279 (364)
T cd05599         201 GTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKIINWKETLQFPDEVPLSPEAKDLIKRLCC-  279 (364)
T ss_pred             cCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-
Confidence            999999999999999999999999999999999999999887665555554432  34455555678999999999996 


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCCc
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEA  691 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~~  691 (730)
                      +|.+|++. ..++++++||||++++|..++...+|.+|.....
T Consensus       280 ~p~~R~~~-~~~~~ll~h~~~~~~~~~~~~~~~~~~~~~~~~~  321 (364)
T cd05599         280 EAERRLGN-NGVNEIKSHPFFKGVDWEHIRERPAPIIPELKSI  321 (364)
T ss_pred             CHhhcCCC-CCHHHHhcCCCcCCCCHHHHhhcCCCCCCCCCCc
Confidence            99999984 4579999999999999998877777776654443

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=8.6e-52  Score=425.67  Aligned_cols=259  Identities=30%  Similarity=0.502  Sum_probs=220.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      |+.|+.+.++|+|+||+||+++++.||+.||||.+.. ...+....+-+.||+++|++|+|||+|.|+++|...+.++||
T Consensus         1 MekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~E-sedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLV   79 (396)
T KOG0593|consen    1 MEKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVE-SEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLV   79 (396)
T ss_pred             CcHHhhhhccccCcceEEEEeccCCcccEEEEEeecc-CCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEE
Confidence            5789999999999999999999999999999999843 333444556689999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      +|||+..-|+. +++.+ ..++++.++.|++|++.|+.|+|++++||||||||||||..+|.+||||||+|+.+..    
T Consensus        80 FE~~dhTvL~e-Le~~p-~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~----  153 (396)
T KOG0593|consen   80 FEYCDHTVLHE-LERYP-NGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSA----  153 (396)
T ss_pred             eeecchHHHHH-HHhcc-CCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhcC----
Confidence            99997666655 45554 3588999999999999999999999999999999999999999999999999965321    


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                    +|+                                                          -.+.+
T Consensus       154 --------------pgd----------------------------------------------------------~YTDY  161 (396)
T KOG0593|consen  154 --------------PGD----------------------------------------------------------NYTDY  161 (396)
T ss_pred             --------------Ccc----------------------------------------------------------hhhhh
Confidence                          111                                                          12347


Q ss_pred             ccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-------------------ccccCC
Q 004790          570 VGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-------------------QQLRFP  629 (730)
Q Consensus       570 vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-------------------~~~~~p  629 (730)
                      |.|.||+|||.+.| .+||..+||||+||++.||++|.+.|.|..+.++++.|..                   ..+++|
T Consensus       162 VATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP  241 (396)
T KOG0593|consen  162 VATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLP  241 (396)
T ss_pred             hhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecC
Confidence            89999999999998 6799999999999999999999999999998888876542                   112233


Q ss_pred             CC----------CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          630 DS----------PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       630 ~~----------~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ..          +.++..+.||+++||..||++|++    .++++.|+||++
T Consensus       242 ~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~s----c~qll~H~yFd~  289 (396)
T KOG0593|consen  242 EPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLS----CEQLLHHPYFDG  289 (396)
T ss_pred             CCCCccchhhhcccchHHHHHHHHHHhcCCcccccc----HHHHhcChHHHH
Confidence            32          455677889999999999999999    699999999965

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5e-50  Score=439.61  Aligned_cols=327  Identities=34%  Similarity=0.577  Sum_probs=243.6

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||+||++++..+++.||||++.+........+..+++|+++|+.++||||++++++|+++.++||||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            47999999999999999999999999999999998776555566778899999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++||+|..++...  +.+++..++.|+.||+.||+|||++||+||||||+|||++.+|++||+|||+++.+.......
T Consensus        81 E~~~gg~L~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~  158 (377)
T cd05629          81 EFLPGGDLMTMLIKY--DTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSA  158 (377)
T ss_pred             eCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeecccccccccccccc
Confidence            999999999988754  578999999999999999999999999999999999999999999999999996432111000


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                      ..        .....+.     .+..+.       ....... ..........+....        ...........+.+
T Consensus       159 ~~--------~~~~~~~-----~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~  209 (377)
T cd05629         159 YY--------QKLLQGK-----SNKNRI-------DNRNSVA-VDSINLTMSSKDQIA--------TWKKNRRLMAYSTV  209 (377)
T ss_pred             cc--------ccccccc-----cccccc-------ccccccc-cccccccccchhhhh--------hhhhcccccccccC
Confidence            00        0000000     000000       0000000 000000000000000        00000001123468


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec--ccccCCCCCCCChhHHHHHHhhhcC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~--~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      ||+.|+|||++.+..++.++|||||||+||||++|+.||.+......+..+..  ..+.+|....++.++++||.+||. 
T Consensus       210 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~-  288 (377)
T cd05629         210 GTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHETYRKIINWRETLYFPDDIHLSVEAEDLIRRLIT-  288 (377)
T ss_pred             CCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCCHHHHHHHHHccCCccCCCCCCCCCHHHHHHHHHHhc-
Confidence            99999999999999999999999999999999999999988765555544443  344556655678999999999997 


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPME  690 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~  690 (730)
                      +|.+|++- ..+.++++||||++++|..++...+|.+|....
T Consensus       289 ~~~~r~~r-~~~~~~l~hp~~~~~~~~~~~~~~~~~~~~~~~  329 (377)
T cd05629         289 NAENRLGR-GGAHEIKSHPFFRGVDWDTIRQIRAPFIPQLKS  329 (377)
T ss_pred             CHhhcCCC-CCHHHHhcCCCcCCCCHHHHccCCCCcccCCCC
Confidence            88887631 238999999999999999998888888876544

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-50  Score=445.80  Aligned_cols=261  Identities=34%  Similarity=0.571  Sum_probs=231.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhh--HHHHHHHHHHHHHHHhcC-CCCCccccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS--RKKLTRAQTEREILQLLD-HPFLPTLYTHFETDR  404 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~--~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~  404 (730)
                      ...+.|.+.+.||+|+||+|++|++..++..||+|++++.....  ....+.+.+|+.+++.+. ||||+++++++.+..
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            44578999999999999999999999999999999888753221  134456779999999998 999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC-CceEEecccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD-GHIMLSDFDLSLRC  483 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~-g~vKL~DFGlA~~~  483 (730)
                      .+|+|||||.||+|++++...  +++.|..+++|++||+.||+|||++||+||||||||||++.+ +++||+|||++..+
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~~--g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~  171 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVNK--GRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAIS  171 (370)
T ss_pred             eEEEEEEecCCccHHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEecccccccc
Confidence            999999999999999988874  789999999999999999999999999999999999999999 99999999998432


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      .                                                                            ...
T Consensus       172 ~----------------------------------------------------------------------------~~~  175 (370)
T KOG0583|consen  172 P----------------------------------------------------------------------------GED  175 (370)
T ss_pred             C----------------------------------------------------------------------------CCC
Confidence            0                                                                            001


Q ss_pred             ccccccccCcccCChhhhccCC-C-CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEG-H-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~-~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      ....++|||+.|+|||++.+.. | +.++||||+||+||.|++|+.||...+...++..|..+++.+|.+.. +.++++|
T Consensus       176 ~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~~~-S~~~~~L  254 (370)
T KOG0583|consen  176 GLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGEFKIPSYLL-SPEARSL  254 (370)
T ss_pred             CcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCCccCCCCcC-CHHHHHH
Confidence            1224679999999999999988 8 68999999999999999999999998878888888889999997644 9999999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |.+||..||.+|++    +.+|+.||||+.
T Consensus       255 i~~mL~~~P~~R~t----~~~i~~h~w~~~  280 (370)
T KOG0583|consen  255 IEKMLVPDPSTRIT----LLEILEHPWFQK  280 (370)
T ss_pred             HHHHcCCCcccCCC----HHHHhhChhhcc
Confidence            99999999999999    699999999996

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.9e-51  Score=455.44  Aligned_cols=261  Identities=32%  Similarity=0.537  Sum_probs=235.9

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +-|++++.||.|+.|.|-+|++..||+.+|||++.+...........+.+|+-||+++.|||+++||++|++..++|||+
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvl   91 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVL   91 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEE
Confidence            56999999999999999999999999999999999886555566677899999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++||.|++++-+.  +.|+|..++.|++||+.||.|+|..+|+||||||||+||+..+.|||+|||+|..        
T Consensus        92 Eyv~gGELFdylv~k--G~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsL--------  161 (786)
T KOG0588|consen   92 EYVPGGELFDYLVRK--GPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASL--------  161 (786)
T ss_pred             EecCCchhHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeec--------
Confidence            999999999988776  7899999999999999999999999999999999999999999999999999832        


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                               +..+.|++                                            +.|
T Consensus       162 -------------------------e~~gklLe--------------------------------------------TSC  172 (786)
T KOG0588|consen  162 -------------------------EVPGKLLE--------------------------------------------TSC  172 (786)
T ss_pred             -------------------------ccCCcccc--------------------------------------------ccC
Confidence                                     11112221                                            358


Q ss_pred             cCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          571 GTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      |.|.|.|||++.|..| |.++||||+|||||.||+|+.||.+.+-+..+.++..+.+.+|  ..++.+++|||++||..|
T Consensus       173 GSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~f~MP--s~Is~eaQdLLr~ml~VD  250 (786)
T KOG0588|consen  173 GSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGVFEMP--SNISSEAQDLLRRMLDVD  250 (786)
T ss_pred             CCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCcccCC--CcCCHHHHHHHHHHhccC
Confidence            9999999999999998 8999999999999999999999998877888888889999888  468999999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          650 PQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                      |.+|+|    .+||++|||+.+..-..
T Consensus       251 p~~RiT----~~eI~kHP~l~g~~~~~  273 (786)
T KOG0588|consen  251 PSTRIT----TEEILKHPFLSGYTSLP  273 (786)
T ss_pred             cccccc----HHHHhhCchhhcCCCCC
Confidence            999999    69999999999865443

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-49  Score=430.37  Aligned_cols=346  Identities=35%  Similarity=0.626  Sum_probs=259.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||+||+|++..+++.||||++++...........+.+|+++|+.++||||++++++|+++.++|+||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            47999999999999999999999999999999998876655566677899999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++|++|..++.+.  ..+++..++.++.||+.||+|||++||+||||||+||||+.++++||+|||++..........
T Consensus        81 e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~  158 (350)
T cd05573          81 EYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDRE  158 (350)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCccc
Confidence            999999999988765  579999999999999999999999999999999999999999999999999986542211000


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                      ..         .  ......         .+      .+........                     ...........+
T Consensus       159 ~~---------~--~~~~~~---------~~------~~~~~~~~~~---------------------~~~~~~~~~~~~  191 (350)
T cd05573         159 YY---------L--NDSHNL---------LF------RDNVLVRRRD---------------------HKQRRVRANSTV  191 (350)
T ss_pred             cc---------c--cccccc---------cc------cccccccccc---------------------cccccccccccc
Confidence            00         0  000000         00      0000000000                     000111223468


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec--ccccCCCCCCCChhHHHHHHhhhcC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~--~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      ||+.|+|||++.+..++.++|||||||+||||++|+.||.+.+....+.++..  ....+|....++.++++||.+||. 
T Consensus       192 gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~li~~ll~-  270 (350)
T cd05573         192 GTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPPDPPVSPEAIDLICRLLC-  270 (350)
T ss_pred             cCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHHHHHHHHhccCCcccCCCCCCCCHHHHHHHHHHcc-
Confidence            99999999999999999999999999999999999999998776655555555  555666666679999999999997 


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCCcCCCCCCCCCCCCC-CCCCCCcccccccccCCCccccc
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVG-VSSSSSKKIVGTDMKSGGKYLDF  727 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  727 (730)
                      ||.+|++.   ++++++||||++++|.......+|.+|..........+...+... .+..............+-.|.+|
T Consensus       271 dp~~R~~s---~~~ll~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (350)
T cd05573         271 DPEDRLGS---FEEIKSHPFFKGIDWENLRETKPPFVPELSSPLDTSNFDDFEDDKDLSDYLSQNSKKLNKGKQLAFVGF  347 (350)
T ss_pred             ChhhcCCC---HHHHhcCCCcCCCCHHHHhhCCCCcCCCCCCchhhhhcCCCCcccccccccccccccccccccCccCCC
Confidence            99999994   589999999999999988877777766544333333333322221 11111122222333444567777


Q ss_pred             cc
Q 004790          728 EF  729 (730)
Q Consensus       728 ~~  729 (730)
                      +|
T Consensus       348 ~~  349 (350)
T cd05573         348 TY  349 (350)
T ss_pred             cc
Confidence            66

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=2e-49  Score=432.25  Aligned_cols=306  Identities=34%  Similarity=0.590  Sum_probs=238.1

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||+||+++++.+++.||||++++...........+++|+.+|..++||||+++++.|++++.+||||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            46999999999999999999999999999999998776656666778899999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |||+||+|..++.+.  ..+++..++.|++||+.||+|||++||+||||||+||||+.+|++||+|||++..+.......
T Consensus        81 E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~  158 (360)
T cd05627          81 EFLPGGDMMTLLMKK--DTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTE  158 (360)
T ss_pred             eCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCcccccccccc
Confidence            999999999988754  579999999999999999999999999999999999999999999999999986432110000


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                      ...   .               .+..      .+..+.......+..                 .+...........+.+
T Consensus       159 ~~~---~---------------~~~~------~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~  197 (360)
T cd05627         159 FYR---N---------------LTHN------PPSDFSFQNMNSKRK-----------------AETWKKNRRQLAYSTV  197 (360)
T ss_pred             ccc---c---------------cccC------Ccccccccccccccc-----------------cccccccccccccccC
Confidence            000   0               0000      000000000000000                 0000011112234578


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec--ccccCCCCCCCChhHHHHHHhhhcC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~--~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      ||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+.++..  ..+.+|....++.++++||.+|+ .
T Consensus       198 gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~  276 (360)
T cd05627         198 GTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYRKVMNWKETLVFPPEVPISEKAKDLILRFC-T  276 (360)
T ss_pred             CCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCCHHHHHHHHHcCCCceecCCCCCCCHHHHHHHHHhc-c
Confidence            99999999999999999999999999999999999999998776655555543  33455655567899999999987 4


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCCCCcchhccCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEGVNWALIRCST  681 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~  681 (730)
                      ||.+|++. ..++++++||||++++|..++...
T Consensus       277 ~p~~R~~~-~~~~ei~~hp~f~~~~~~~~~~~~  308 (360)
T cd05627         277 DSENRIGS-NGVEEIKSHPFFEGVDWGHIRERP  308 (360)
T ss_pred             ChhhcCCC-CCHHHHhcCCCCCCCCHHHHhcCC
Confidence            99999973 347999999999999999886543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9e-50  Score=421.88  Aligned_cols=265  Identities=37%  Similarity=0.711  Sum_probs=231.7

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||.||+|++..+++.||+|++.+......+....+.+|+++|+.++||||+++++++.++..+|+||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            46999999999999999999999999999999998765554455677889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++||+|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++....      
T Consensus        81 e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~------  152 (291)
T cd05612          81 EYVPGGELFSYLRNS--GRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLR------  152 (291)
T ss_pred             eCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhcc------
Confidence            999999999988764  578999999999999999999999999999999999999999999999999984310      


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                               ......+
T Consensus       153 -------------------------------------------------------------------------~~~~~~~  159 (291)
T cd05612         153 -------------------------------------------------------------------------DRTWTLC  159 (291)
T ss_pred             -------------------------------------------------------------------------CCccccc
Confidence                                                                                     0011347


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      ||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|.  ..+..+++||++||..||
T Consensus       160 gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~li~~~l~~dp  237 (291)
T cd05612         160 GTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGKLEFPR--HLDLYAKDLIKKLLVVDR  237 (291)
T ss_pred             CChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcCCCc--cCCHHHHHHHHHHcCCCH
Confidence            999999999999999999999999999999999999999987666656666666665554  458899999999999999


Q ss_pred             CCcCCc-hhcHHHHHcCCCCCCCCcchhc
Q 004790          651 QHRLGV-KRGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       651 ~~R~t~-~~~a~elL~HPfF~~v~w~~~r  678 (730)
                      .+|++. +..++++++||||+.++|..+.
T Consensus       238 ~~R~~~~~~~~~~~l~h~~~~~~~~~~~~  266 (291)
T cd05612         238 TRRLGNMKNGADDVKNHRWFKSVDWDDVP  266 (291)
T ss_pred             HHccCCccCCHHHHhcCccccCCCHHHHh
Confidence            999962 3458999999999999998653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.6e-49  Score=426.22  Aligned_cols=275  Identities=38%  Similarity=0.596  Sum_probs=235.9

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||.||+|++..+++.||||++.+...........+.+|+++|+.++||||++++++|+++..+||||
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            47999999999999999999999999999999998876555556677889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++||+|..++...  ..+++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....     
T Consensus        81 e~~~g~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~-----  153 (333)
T cd05600          81 EYVPGGDFRTLLNNL--GVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT-----  153 (333)
T ss_pred             eCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCccccc-----
Confidence            999999999988754  5789999999999999999999999999999999999999999999999999843100     


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                                .....+
T Consensus       154 --------------------------------------------------------------------------~~~~~~  159 (333)
T cd05600         154 --------------------------------------------------------------------------YANSVV  159 (333)
T ss_pred             --------------------------------------------------------------------------ccCCcc
Confidence                                                                                      012357


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc--cccCCCC----CCCChhHHHHHHh
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--QLRFPDS----PATSYASRDLIRG  644 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~--~~~~p~~----~~~s~~~~dLI~~  644 (730)
                      ||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+..+.+..+...  .+..|..    ..++.++.+||.+
T Consensus       160 gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~  239 (333)
T cd05600         160 GSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITK  239 (333)
T ss_pred             cCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccccccCCCCCccccccCHHHHHHHHH
Confidence            999999999999999999999999999999999999999876654443333221  1122221    2458899999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPME  690 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~  690 (730)
                      ||..+|++|++    ++++++||||.+++|..++...||.+|....
T Consensus       240 ~l~~~~~rr~s----~~~ll~h~~~~~~~~~~~~~~~~~~~~~~~~  281 (333)
T cd05600         240 LINDPSRRFGS----LEDIKNHPFFKEVDWNELRELKPPFVPELES  281 (333)
T ss_pred             HhhChhhhcCC----HHHHHhCcccCCCCHHHHhhCCCCCCCCCCC
Confidence            99999999999    7999999999999999988777777776543

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=1.3e-49  Score=435.84  Aligned_cols=334  Identities=34%  Similarity=0.575  Sum_probs=246.1

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||.||+|++..+++.||||++.+...........+.+|+++|+.++||||+++++.|++++.+||||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            47999999999999999999999999999999998776555566677899999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |||+||+|.+++.+.  +.+++..++.|+.||+.||+|||++||+||||||+|||++.++++||+|||+|..+.......
T Consensus        81 E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~  158 (376)
T cd05598          81 DYIPGGDMMSLLIRL--GIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSK  158 (376)
T ss_pred             eCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCcccccccccc
Confidence            999999999988765  578999999999999999999999999999999999999999999999999985432211100


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCcccc-CCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCI-QPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                      ...   .       +. ...+.. ..+..... ...|.... .      .               .............++
T Consensus       159 ~~~---~-------~~-~~~~~~-~~~~~~~~~~~~~~~~~-~------~---------------~~~~~~~~~~~~~~~  204 (376)
T cd05598         159 YYQ---K-------GD-HHRQDS-MEPSEEWSEIDRCRLKP-L------E---------------RRRKRQHQRCLAHSL  204 (376)
T ss_pred             ccc---c-------cc-cccccc-ccccccccccccccccc-h------h---------------hhhhhhccccccccc
Confidence            000   0       00 000000 00000000 00000000 0      0               000000111223467


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec--ccccCCCCCCCChhHHHHHHhhhc
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~--~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +||+.|+|||++.+..++.++|||||||+||||++|+.||.+......+.++..  ..+.++....++.++.+||.+|+ 
T Consensus       205 ~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~-  283 (376)
T cd05598         205 VGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKVINWETTLHIPSQAKLSREASDLILRLC-  283 (376)
T ss_pred             CCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHHHHHHHHhccCccccCCCCCCCCHHHHHHHHHHh-
Confidence            999999999999999999999999999999999999999998766555444433  23344555568899999999976 


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCCCCcchh-ccCCCCCCCCCCCcCCCCCCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEGVNWALI-RCSTPPEVPRPMEAELPGKFGAVDP  702 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~v~w~~~-r~~~pp~~p~p~~~~~p~~~~~~~~  702 (730)
                      .+|.+|++. ..+.++++||||++++|..+ +...+|.+|..........+...++
T Consensus       284 ~~p~~R~~~-~t~~ell~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (376)
T cd05598         284 CGAEDRLGK-NGADEIKAHPFFKGIDFASLIRRQKAPYIPKITHPTDTSNFDPVDP  338 (376)
T ss_pred             cCHhhcCCC-CCHHHHhCCCCcCCCCHHHHhhcCCCCCCCcCCCcchhhhcCCCCc
Confidence            599999931 12799999999999999877 5555666666544443334443333

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=1.6e-49  Score=418.41  Aligned_cols=280  Identities=35%  Similarity=0.560  Sum_probs=231.9

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      .|++++.||+|+||.||+|.+..+++.||+|++.+...........+.+|+++|+.++|+||++++++|.+++.+|+|||
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence            38899999999999999999999999999999987665544445567889999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+++|+|..++.......+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....      
T Consensus        81 ~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~------  154 (285)
T cd05631          81 IMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPE------  154 (285)
T ss_pred             ecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCC------
Confidence            99999998776654445689999999999999999999999999999999999999999999999999843200      


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                             .......+|
T Consensus       155 -----------------------------------------------------------------------~~~~~~~~g  163 (285)
T cd05631         155 -----------------------------------------------------------------------GETVRGRVG  163 (285)
T ss_pred             -----------------------------------------------------------------------CCeecCCCC
Confidence                                                                                   000112478


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec--ccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~--~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      |+.|+|||++.+..++.++|||||||++|||++|+.||.+.........+..  ...........+.++.+||++||..|
T Consensus       164 ~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~  243 (285)
T cd05631         164 TVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKN  243 (285)
T ss_pred             CCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhcccccCCccCCHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999987654322211111  11112223457889999999999999


Q ss_pred             CCCcCCch-hcHHHHHcCCCCCCCCcchhc--cCCCCCCCCC
Q 004790          650 PQHRLGVK-RGATEIKQHPFFEGVNWALIR--CSTPPEVPRP  688 (730)
Q Consensus       650 P~~R~t~~-~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p  688 (730)
                      |.+|+++. ..++++++||||++++|..+.  ...||..|.+
T Consensus       244 P~~R~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~  285 (285)
T cd05631         244 PKERLGCRGNGAAGVKQHPIFKNINFKRLEANMLEPPFCPDP  285 (285)
T ss_pred             HHHhcCCCCCCHHHHhcCHhhcCCCHHHHHhCcCCcCCCCCC
Confidence            99999864 358999999999999999885  4466776653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=2.3e-49  Score=425.60  Aligned_cols=271  Identities=40%  Similarity=0.703  Sum_probs=229.7

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGG  416 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GG  416 (730)
                      +.||+|+||.||+|+++.+++.||||++++...........+.+|+.+|+.++||||++++++|+.+..+||||||++||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            46999999999999999999999999998876655566677889999999999999999999999999999999999999


Q ss_pred             CccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCC
Q 004790          417 DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLD  496 (730)
Q Consensus       417 sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~  496 (730)
                      +|..++...  +.+++..++.++.||+.||+|||++||+||||||+||||+.+|.+||+|||+++....           
T Consensus        81 ~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~-----------  147 (323)
T cd05571          81 ELFFHLSRE--RVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGIS-----------  147 (323)
T ss_pred             cHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCccccc-----------
Confidence            998887654  5789999999999999999999999999999999999999999999999999842100           


Q ss_pred             CCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccC
Q 004790          497 SDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYL  576 (730)
Q Consensus       497 ~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~  576 (730)
                                                                                       .......++||+.|+
T Consensus       148 -----------------------------------------------------------------~~~~~~~~~gt~~y~  162 (323)
T cd05571         148 -----------------------------------------------------------------DGATMKTFCGTPEYL  162 (323)
T ss_pred             -----------------------------------------------------------------CCCcccceecCcccc
Confidence                                                                             000112357999999


Q ss_pred             ChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          577 APEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       577 APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      |||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|  ..++.++++||.+||.+||++|++.
T Consensus       163 aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~li~~~L~~dP~~R~~~  240 (323)
T cd05571         163 APEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFP--RTLSPEAKSLLAGLLKKDPKQRLGG  240 (323)
T ss_pred             ChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHccCCHHHcCCC
Confidence            99999999999999999999999999999999987665555555555555555  3578999999999999999999943


Q ss_pred             h-hcHHHHHcCCCCCCCCcchhc--cCCCCCCCC
Q 004790          657 K-RGATEIKQHPFFEGVNWALIR--CSTPPEVPR  687 (730)
Q Consensus       657 ~-~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~  687 (730)
                      . ..+.++++||||.+++|..+.  ...||..|.
T Consensus       241 ~~~~~~~ll~h~~f~~~~~~~~~~~~~~~~~~~~  274 (323)
T cd05571         241 GPEDAKEIMEHRFFASINWQDVVQKKLEPPFKPQ  274 (323)
T ss_pred             CCCCHHHHHcCCCcCCCCHHHHHhCCCCCCcCCC
Confidence            2 138999999999999998763  334444443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=2.1e-49  Score=430.54  Aligned_cols=279  Identities=34%  Similarity=0.686  Sum_probs=239.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCC-eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTR-CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~-~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      +..++|++++.||+|+||.||+|+++.++ ..||+|++.+...........+.+|+.+|+.++||||++++++|.++..+
T Consensus        27 ~~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~  106 (340)
T PTZ00426         27 MKYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYL  106 (340)
T ss_pred             CChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEE
Confidence            56688999999999999999999976654 68999999877665556667889999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||++||+|..++.+.  +.+++..++.|+.||+.||.|||++||+||||||+|||++.+|++||+|||++..... 
T Consensus       107 ~lv~Ey~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~-  183 (340)
T PTZ00426        107 YLVLEFVIGGEFFTFLRRN--KRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDT-  183 (340)
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeecCC-
Confidence            9999999999999988765  5799999999999999999999999999999999999999999999999999843100 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                    ..
T Consensus       184 ------------------------------------------------------------------------------~~  185 (340)
T PTZ00426        184 ------------------------------------------------------------------------------RT  185 (340)
T ss_pred             ------------------------------------------------------------------------------Cc
Confidence                                                                                          01


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      .+.+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+..+..+...+|.  .++..+++||++||
T Consensus       186 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~~l  263 (340)
T PTZ00426        186 YTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEGIIYFPK--FLDNNCKHLMKKLL  263 (340)
T ss_pred             ceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHc
Confidence            1357999999999999999999999999999999999999999987665556666666655553  57889999999999


Q ss_pred             cCCCCCcCCc-hhcHHHHHcCCCCCCCCcchhc--cCCCCCCCCCC
Q 004790          647 VKEPQHRLGV-KRGATEIKQHPFFEGVNWALIR--CSTPPEVPRPM  689 (730)
Q Consensus       647 ~~DP~~R~t~-~~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p~  689 (730)
                      ..||.+|++. +..++++++||||++++|..+.  ...+|..|...
T Consensus       264 ~~dp~~R~~~~~~~~~~~~~hp~f~~~~~~~~~~~~~~~~~~p~~~  309 (340)
T PTZ00426        264 SHDLTKRYGNLKKGAQNVKEHPWFGNIDWVSLLHKNVEVPYKPKYK  309 (340)
T ss_pred             ccCHHHcCCCCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCC
Confidence            9999999742 3448999999999999998764  44556666543

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=6.6e-51  Score=444.63  Aligned_cols=256  Identities=30%  Similarity=0.532  Sum_probs=230.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      |++|.+.+.||+|+||+||+|+.+.+.++||||++.|..-. .+.+..+++|++|++.|+|||||.++++|++..++|+|
T Consensus         1 me~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~-~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vV   79 (808)
T KOG0597|consen    1 MEQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRN-EKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVV   79 (808)
T ss_pred             CcchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCc-hHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEE
Confidence            57899999999999999999999999999999999887643 46678899999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      +|||.| +|+.++...  +.++|+.++.++++++.||.|||+++|+|||+||.|||++..|++||||||+|+.+...   
T Consensus        80 te~a~g-~L~~il~~d--~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~---  153 (808)
T KOG0597|consen   80 TEYAVG-DLFTILEQD--GKLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTN---  153 (808)
T ss_pred             ehhhhh-hHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcccC---
Confidence            999966 999998865  78999999999999999999999999999999999999999999999999999653210   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               ..--+++
T Consensus       154 -------------------------------------------------------------------------t~vltsi  160 (808)
T KOG0597|consen  154 -------------------------------------------------------------------------TSVLTSI  160 (808)
T ss_pred             -------------------------------------------------------------------------ceeeeec
Confidence                                                                                     0112356


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      -|||.|||||++.+..|+..+|+||||||+|||++|++||....-......|+.....+|.  ..+..+++||+++|.+|
T Consensus       161 kGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si~~Lv~~I~~d~v~~p~--~~S~~f~nfl~gLL~kd  238 (808)
T KOG0597|consen  161 KGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSITQLVKSILKDPVKPPS--TASSSFVNFLQGLLIKD  238 (808)
T ss_pred             cCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCCCCcc--cccHHHHHHHHHHhhcC
Confidence            8999999999999999999999999999999999999999987666666667777777775  67899999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |.+|++    ..+++.|||+++
T Consensus       239 P~~Rlt----W~~Ll~HpF~k~  256 (808)
T KOG0597|consen  239 PAQRLT----WTDLLGHPFWKG  256 (808)
T ss_pred             hhhccc----HHHHhcChHHhh
Confidence            999999    589999999986

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-51  Score=443.51  Aligned_cols=296  Identities=35%  Similarity=0.649  Sum_probs=263.1

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      ..+.+++++++..||.|+||.|-+++.+.....+|+|+++|..+...++.+++..|..||..++.|+||+||-.|.++.+
T Consensus       415 a~v~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~ky  494 (732)
T KOG0614|consen  415 AQVKLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKY  494 (732)
T ss_pred             cccchhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchh
Confidence            34677899999999999999999999988777799999999999998999999999999999999999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|++||-|-||+|+.++...  +.|.+..++||++.+++|++|||++|||||||||||+|++.+|.+||.|||+|+.+. 
T Consensus       495 vYmLmEaClGGElWTiLrdR--g~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~-  571 (732)
T KOG0614|consen  495 VYMLMEACLGGELWTILRDR--GSFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIG-  571 (732)
T ss_pred             hhhhHHhhcCchhhhhhhhc--CCcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhc-
Confidence            99999999999999988765  789999999999999999999999999999999999999999999999999996532 


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                                                                                                  ...+
T Consensus       572 ----------------------------------------------------------------------------~g~K  575 (732)
T KOG0614|consen  572 ----------------------------------------------------------------------------SGRK  575 (732)
T ss_pred             ----------------------------------------------------------------------------cCCc
Confidence                                                                                        1235


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      +++|||||+|.|||+++..+|+.++|.||||+++||||+|.+||.+.+.+.++..|+.+.-.+..+..++..+.+||+++
T Consensus       576 TwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid~i~~Pr~I~k~a~~Lik~L  655 (732)
T KOG0614|consen  576 TWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKGIDKIEFPRRITKTATDLIKKL  655 (732)
T ss_pred             eeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhhhhhcccccchhHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999888876544444467889999999999


Q ss_pred             hcCCCCCcCCc-hhcHHHHHcCCCCCCCCcchhc--cCCCCCCCCCCCcCCCCCCCCC
Q 004790          646 LVKEPQHRLGV-KRGATEIKQHPFFEGVNWALIR--CSTPPEVPRPMEAELPGKFGAV  700 (730)
Q Consensus       646 L~~DP~~R~t~-~~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p~~~~~p~~~~~~  700 (730)
                      ...+|.+|++. ..+..+|.+|.||.++||..++  ...||.+|....+.....|+..
T Consensus       656 Cr~~P~ERLG~~~~gI~DIkkH~Wf~gfdweglr~~~L~pPi~~~va~ptD~s~Fd~~  713 (732)
T KOG0614|consen  656 CRDNPTERLGYQKGGINDIKKHRWFEGFDWEGLRSRTLPPPIIPSVANPTDVSNFDNF  713 (732)
T ss_pred             HhcCcHhhhccccCChHHHHhhhhhhcCChhhhhhccCCCCccccCCCcccchhccCC
Confidence            99999999996 5789999999999999999875  4556666655444444444443

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7e-51  Score=439.31  Aligned_cols=260  Identities=30%  Similarity=0.483  Sum_probs=224.0

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccc-e
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDR-F  405 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~-~  405 (730)
                      ..+++|.++++||.|+||.||+|+.+.++..||||.|++....-++.  .-.||+.-|++|+ |||||+|++++.+.. .
T Consensus         7 ~~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~--~nLREvksL~kln~hpniikL~Evi~d~~~~   84 (538)
T KOG0661|consen    7 IFMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEEC--MNLREVKSLRKLNPHPNIIKLKEVIRDNDRI   84 (538)
T ss_pred             hHHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHH--HHHHHHHHHHhcCCCCcchhhHHHhhccCce
Confidence            45789999999999999999999999999999999997765443222  2368999999998 999999999998877 9


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|+||||| ..+|+++++.+ ++.|+|..++.|++||+.||+|+|.+|++||||||||||+.....|||+|||||+....
T Consensus        85 L~fVfE~M-d~NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~S  162 (538)
T KOG0661|consen   85 LYFVFEFM-DCNLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRS  162 (538)
T ss_pred             EeeeHHhh-hhhHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEeccccccccccc
Confidence            99999999 77899988776 78999999999999999999999999999999999999999888999999999965321


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      .+                                                                             .
T Consensus       163 kp-----------------------------------------------------------------------------P  165 (538)
T KOG0661|consen  163 KP-----------------------------------------------------------------------------P  165 (538)
T ss_pred             CC-----------------------------------------------------------------------------C
Confidence            10                                                                             1


Q ss_pred             ccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-------------------cc
Q 004790          566 SMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-------------------QQ  625 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-------------------~~  625 (730)
                      .+.+|-|.||+|||+|+..+ |+.++|||++|||++|+++-++.|.|.++.+++++|..                   -.
T Consensus       166 YTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mn  245 (538)
T KOG0661|consen  166 YTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMN  245 (538)
T ss_pred             cchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhc
Confidence            13468999999999998766 79999999999999999999999999999999987652                   11


Q ss_pred             ccCCCC---------CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          626 LRFPDS---------PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       626 ~~~p~~---------~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      +.+|..         +..+.++.+||.+||.+||++|||    |.++|+||||+.-
T Consensus       246 f~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpT----A~~al~~pffq~~  297 (538)
T KOG0661|consen  246 FRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPT----ASQALQHPFFQVG  297 (538)
T ss_pred             cCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCcc----HHHHhcCcccccc
Confidence            233332         346788999999999999999999    8999999999863

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=5.1e-49  Score=422.97  Aligned_cols=279  Identities=38%  Similarity=0.658  Sum_probs=237.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++.+.||+|+||+||+++++.+++.||||++++...........+.+|+.+++.++||||++++++|+++..+||||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            46999999999999999999999999999999998876655566677889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++||+|..++.+.. ..+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||++......    
T Consensus        81 e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~----  155 (330)
T cd05601          81 EYQPGGDLLSLLNRYE-DQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTAN----  155 (330)
T ss_pred             CCCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCC----
Confidence            9999999999887652 46999999999999999999999999999999999999999999999999998432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                             ........+
T Consensus       156 -----------------------------------------------------------------------~~~~~~~~~  164 (330)
T cd05601         156 -----------------------------------------------------------------------KMVNSKLPV  164 (330)
T ss_pred             -----------------------------------------------------------------------Cceeeeccc
Confidence                                                                                   000111247


Q ss_pred             cCcccCChhhhc------cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc--cccCCCCCCCChhHHHHH
Q 004790          571 GTHEYLAPEIIK------GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--QLRFPDSPATSYASRDLI  642 (730)
Q Consensus       571 GT~~Y~APEvl~------g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~--~~~~p~~~~~s~~~~dLI  642 (730)
                      ||+.|+|||++.      +..++.++|||||||++|||++|+.||.+......+.++...  ...+|....++.++++||
T Consensus       165 gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li  244 (330)
T cd05601         165 GTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLI  244 (330)
T ss_pred             CCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHH
Confidence            899999999997      456789999999999999999999999877655555544432  345566667899999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCC
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPME  690 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~  690 (730)
                      ++||. ||.+|++    ++++++||||+.++|..++...||..|....
T Consensus       245 ~~ll~-~p~~R~t----~~~l~~h~~~~~~~~~~~~~~~~~~~~~~~~  287 (330)
T cd05601         245 QSLLC-GQKERLG----YEGLCCHPFFSKIDWNNIRNSLPPFVPTLKS  287 (330)
T ss_pred             HHHcc-ChhhCCC----HHHHhCCCCcCCCCHHHHhhCCCCccCcCCC
Confidence            99998 9999999    6899999999999999998777766665433

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=8.4e-49  Score=430.66  Aligned_cols=284  Identities=35%  Similarity=0.653  Sum_probs=235.4

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      ...+..++|++++.||+|+||.||+++++.+++.||+|++.+...........+.+|+.+++.++||||++++++|.++.
T Consensus        37 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~  116 (370)
T cd05621          37 KLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDK  116 (370)
T ss_pred             hcCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC
Confidence            34456789999999999999999999999999999999998765555555567889999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|+|||||+||+|..++...   .+++.+++.++.||+.||+|||++||+||||||+|||++.+|++||+|||++....
T Consensus       117 ~~~lv~Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~  193 (370)
T cd05621         117 YLYMVMEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMD  193 (370)
T ss_pred             EEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccceecc
Confidence            999999999999999988653   58999999999999999999999999999999999999999999999999985321


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                           ...
T Consensus       194 ~~---------------------------------------------------------------------------~~~  198 (370)
T cd05621         194 ET---------------------------------------------------------------------------GMV  198 (370)
T ss_pred             cC---------------------------------------------------------------------------Cce
Confidence            00                                                                           000


Q ss_pred             cccccccCcccCChhhhccCC----CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc--cccCCCCCCCChhH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEG----HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--QLRFPDSPATSYAS  638 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~----~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~--~~~~p~~~~~s~~~  638 (730)
                      ...+.+||+.|+|||++.+..    ++.++|||||||+||||++|+.||.+.+....+.+++..  .+.+|....++..+
T Consensus       199 ~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~  278 (370)
T cd05621         199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHA  278 (370)
T ss_pred             ecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcccCCCCcccCCHHH
Confidence            112457999999999998754    788999999999999999999999987665555555543  35566666779999


Q ss_pred             HHHHHhhhcCCCCC--cCCchhcHHHHHcCCCCCCCCc--chhccCCCCCCCCCCC
Q 004790          639 RDLIRGLLVKEPQH--RLGVKRGATEIKQHPFFEGVNW--ALIRCSTPPEVPRPME  690 (730)
Q Consensus       639 ~dLI~~lL~~DP~~--R~t~~~~a~elL~HPfF~~v~w--~~~r~~~pp~~p~p~~  690 (730)
                      ++||.+||..++.+  |++    +.++++||||+..+|  ..++...+|..|....
T Consensus       279 ~~li~~~L~~~~~r~~R~~----~~e~l~hp~~~~~~~~~~~~~~~~~~~~p~~~~  330 (370)
T cd05621         279 KNLICAFLTDREVRLGRNG----VEEIKQHPFFKNDQWNWDNIRETAAPVVPELSS  330 (370)
T ss_pred             HHHHHHHccCchhccCCCC----HHHHhcCcccCCCCcChHhcCCCCCCcCCCCCC
Confidence            99999999855443  677    799999999998555  4555556666665433

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=1.3e-48  Score=428.86  Aligned_cols=282  Identities=35%  Similarity=0.649  Sum_probs=237.7

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      ...+..++|++++.||+|+||.||++++..+++.||+|++.+...........+.+|+.+++.++||||++++++|+++.
T Consensus        37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~  116 (370)
T cd05596          37 KLRMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDK  116 (370)
T ss_pred             cCCCCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCC
Confidence            34466789999999999999999999999999999999998765555555566788999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|+|||||+||+|..++...   .+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||++....
T Consensus       117 ~~~lv~Ey~~gg~L~~~l~~~---~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~  193 (370)
T cd05596         117 YLYMVMEYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMD  193 (370)
T ss_pred             EEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeecc
Confidence            999999999999999987653   58999999999999999999999999999999999999999999999999984321


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                           ...
T Consensus       194 ~~---------------------------------------------------------------------------~~~  198 (370)
T cd05596         194 AN---------------------------------------------------------------------------GMV  198 (370)
T ss_pred             CC---------------------------------------------------------------------------Ccc
Confidence            00                                                                           000


Q ss_pred             cccccccCcccCChhhhccCC----CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc--cccCCCCCCCChhH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEG----HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--QLRFPDSPATSYAS  638 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~----~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~--~~~~p~~~~~s~~~  638 (730)
                      .....+||+.|+|||++.+..    ++.++|||||||+||||++|+.||.+.+....+.++...  .+.+|....++.++
T Consensus       199 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  278 (370)
T cd05596         199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQA  278 (370)
T ss_pred             cCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHH
Confidence            112357999999999997643    788999999999999999999999987665555565543  35566666789999


Q ss_pred             HHHHHhhhcCCCCC--cCCchhcHHHHHcCCCCCCCCcch--hccCCCCCCCCC
Q 004790          639 RDLIRGLLVKEPQH--RLGVKRGATEIKQHPFFEGVNWAL--IRCSTPPEVPRP  688 (730)
Q Consensus       639 ~dLI~~lL~~DP~~--R~t~~~~a~elL~HPfF~~v~w~~--~r~~~pp~~p~p  688 (730)
                      ++||++||..+|.+  |++    ++++++||||++.+|..  ++...+|.+|..
T Consensus       279 ~~li~~~L~~~p~r~~R~s----~~ell~h~~~~~~~~~~~~~~~~~~~~~p~~  328 (370)
T cd05596         279 KDLICAFLTDREVRLGRNG----VDEIKSHPFFKNDQWTFDNIRETVAPVVPEL  328 (370)
T ss_pred             HHHHHHHccChhhccCCCC----HHHHhcCcccCCCChhhHHhcCCCcCccCcC
Confidence            99999999999987  998    79999999999988864  455556666654

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=1.6e-48  Score=418.78  Aligned_cols=275  Identities=37%  Similarity=0.702  Sum_probs=231.6

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHH---hcCCCCCccccccccccceeeEE
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ---LLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~---~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      |++++.||+|+||.||+|++..+++.||||++++.........+.+.+|++++.   .++||||++++++|++...+|+|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            789999999999999999999999999999998776555555667777877664   56899999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||++|++|..++..   ..+++..++.|+.||+.||.|||++||+||||||+|||++.+|.+||+|||++.....    
T Consensus        81 ~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~----  153 (324)
T cd05589          81 MEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMG----  153 (324)
T ss_pred             EcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCCC----
Confidence            999999999877654   4699999999999999999999999999999999999999999999999998742100    


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              .......+
T Consensus       154 ------------------------------------------------------------------------~~~~~~~~  161 (324)
T cd05589         154 ------------------------------------------------------------------------FGDRTSTF  161 (324)
T ss_pred             ------------------------------------------------------------------------CCCccccc
Confidence                                                                                    00011245


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      +||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|.  .++..+.+||++||.+|
T Consensus       162 ~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~~L~~d  239 (324)
T cd05589         162 CGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDEVRYPR--FLSREAISIMRRLLRRN  239 (324)
T ss_pred             ccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHHhhcC
Confidence            8999999999999999999999999999999999999999987666666566665555553  57899999999999999


Q ss_pred             CCCcCCch-hcHHHHHcCCCCCCCCcchh--ccCCCCCCCCC
Q 004790          650 PQHRLGVK-RGATEIKQHPFFEGVNWALI--RCSTPPEVPRP  688 (730)
Q Consensus       650 P~~R~t~~-~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p  688 (730)
                      |.+|++.. ..+.++++||||++++|..+  +...+|..|..
T Consensus       240 P~~R~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~~~~~~~  281 (324)
T cd05589         240 PERRLGSGEKDAEDVKKQPFFRDINWDDLLARKIKPPFVPTI  281 (324)
T ss_pred             HhHcCCCCCCCHHHHhhCCCcCCCCHHHHHhCCCCcCccCCC
Confidence            99999753 35899999999999999865  33445555543

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=1.7e-48  Score=418.55  Aligned_cols=267  Identities=35%  Similarity=0.672  Sum_probs=229.4

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCC-CCccccccccccceeeEEe
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP-FLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HP-nIV~L~~~f~~~~~l~LVm  410 (730)
                      +|++++.||+|+||.||+|++..+++.||||++.+...........+..|+++++.++|+ +|++++++|.+.+.+|+||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            589999999999999999999999999999999887655555667788999999999765 6888999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++||+|..++...  ..+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||++.....     
T Consensus        81 E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~-----  153 (324)
T cd05587          81 EYVNGGDLMYHIQQV--GKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIF-----  153 (324)
T ss_pred             cCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCC-----
Confidence            999999998887654  5689999999999999999999999999999999999999999999999999732100     


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                             ........+
T Consensus       154 -----------------------------------------------------------------------~~~~~~~~~  162 (324)
T cd05587         154 -----------------------------------------------------------------------GGKTTRTFC  162 (324)
T ss_pred             -----------------------------------------------------------------------CCCceeeec
Confidence                                                                                   000112357


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      ||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|  ..++.++.+||++||.+||
T Consensus       163 gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~li~~~l~~~P  240 (324)
T cd05587         163 GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYP--KSLSKEAVSICKGLLTKHP  240 (324)
T ss_pred             CCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHhhcCH
Confidence            99999999999999999999999999999999999999998776666666665555555  3578999999999999999


Q ss_pred             CCcCCch-hcHHHHHcCCCCCCCCcchhc
Q 004790          651 QHRLGVK-RGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       651 ~~R~t~~-~~a~elL~HPfF~~v~w~~~r  678 (730)
                      .+|++.. ...+++++||||+.++|..+.
T Consensus       241 ~~R~~~~~~~~~~~~~hp~~~~~~~~~~~  269 (324)
T cd05587         241 AKRLGCGPTGERDIREHAFFRRIDWEKLE  269 (324)
T ss_pred             HHcCCCCCCCHHHHhcCCCcCCCCHHHHH
Confidence            9999863 346899999999999998763

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.5e-50  Score=404.28  Aligned_cols=260  Identities=33%  Similarity=0.566  Sum_probs=241.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ..+++|++.+.||+|.||.||+|+.+.++-.||+|++-|..+........+.+|++|-..|+||||+++|++|.++...|
T Consensus        19 ~~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riy   98 (281)
T KOG0580|consen   19 WTLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIY   98 (281)
T ss_pred             cchhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeE
Confidence            55689999999999999999999999999999999999998877677778999999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      |++||..+|+|+..++.++.+.|++..+..|++|++.||.|+|.++||||||||+|+|++.+|.+||+|||.+..-    
T Consensus        99 LilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~----  174 (281)
T KOG0580|consen   99 LILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHA----  174 (281)
T ss_pred             EEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeec----
Confidence            9999999999999999777889999999999999999999999999999999999999999999999999998320    


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                ...+.+
T Consensus       175 --------------------------------------------------------------------------p~~kR~  180 (281)
T KOG0580|consen  175 --------------------------------------------------------------------------PSNKRK  180 (281)
T ss_pred             --------------------------------------------------------------------------CCCCce
Confidence                                                                                      012345


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +.|||..|++||.+.+..|+..+|+|++|++.||++.|.+||......+++.+|..-.+.+|  ..++.+++|||.+||.
T Consensus       181 tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~~~~~p--~~is~~a~dlI~~ll~  258 (281)
T KOG0580|consen  181 TLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKVDLKFP--STISGGAADLISRLLV  258 (281)
T ss_pred             eeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHccccCC--cccChhHHHHHHHHhc
Confidence            78999999999999999999999999999999999999999999988888888888888888  5789999999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ++|.+|+.    ..|++.|||...
T Consensus       259 ~~p~~r~~----l~~v~~hpwI~a  278 (281)
T KOG0580|consen  259 KNPIERLA----LTEVMDHPWIVA  278 (281)
T ss_pred             cCcccccc----HHHHhhhHHHHh
Confidence            99999999    799999999864

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=2.4e-48  Score=417.25  Aligned_cols=276  Identities=35%  Similarity=0.666  Sum_probs=234.9

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEEe
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +|++++.||+|+||+||+|++..+++.||||++.+..............|..++..+ +|++|++++++|++.+.+|+||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            589999999999999999999999999999999887655555566677888888877 6899999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++||+|..++...  ..+++..++.++.||+.||+|||++||+||||||+|||++.++++||+|||+++....     
T Consensus        81 E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~-----  153 (323)
T cd05616          81 EYVNGGDLMYQIQQV--GRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMW-----  153 (323)
T ss_pred             cCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecCC-----
Confidence            999999998877654  5689999999999999999999999999999999999999999999999999842100     


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                             ........+
T Consensus       154 -----------------------------------------------------------------------~~~~~~~~~  162 (323)
T cd05616         154 -----------------------------------------------------------------------DGVTTKTFC  162 (323)
T ss_pred             -----------------------------------------------------------------------CCCccccCC
Confidence                                                                                   000112357


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      ||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|.  ..+.++++||.+||.+||
T Consensus       163 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~~l~~~p  240 (323)
T cd05616         163 GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPK--SMSKEAVAICKGLMTKHP  240 (323)
T ss_pred             CChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC--cCCHHHHHHHHHHcccCH
Confidence            999999999999999999999999999999999999999987766666666666665554  578999999999999999


Q ss_pred             CCcCCch-hcHHHHHcCCCCCCCCcchhc--cCCCCCCCC
Q 004790          651 QHRLGVK-RGATEIKQHPFFEGVNWALIR--CSTPPEVPR  687 (730)
Q Consensus       651 ~~R~t~~-~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~  687 (730)
                      .+|++.. ....++++||||+.++|..+.  ...+|..|.
T Consensus       241 ~~R~~~~~~~~~~i~~h~~~~~~~~~~~~~~~~~~~~~~~  280 (323)
T cd05616         241 GKRLGCGPEGERDIKEHAFFRYIDWEKLERKEVQPPYKPK  280 (323)
T ss_pred             HhcCCCCCCCHHHHhcCCCcCCCCHHHHHhCCCCCCcCCc
Confidence            9999963 357899999999999999874  334444444

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.6e-48  Score=415.03  Aligned_cols=258  Identities=40%  Similarity=0.716  Sum_probs=224.7

Q ss_pred             EccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCc
Q 004790          339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL  418 (730)
Q Consensus       339 LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL  418 (730)
                      ||+|+||.||+|++..+++.||+|++++...........+.+|+.+|+.++||||++++++|.++..+|+||||++||+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            79999999999999999999999999877655556677888999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCC
Q 004790          419 HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSD  498 (730)
Q Consensus       419 ~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~  498 (730)
                      ..++.+.  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....             
T Consensus        81 ~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~-------------  145 (312)
T cd05585          81 FHHLQRE--GRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMK-------------  145 (312)
T ss_pred             HHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCcc-------------
Confidence            9888764  5799999999999999999999999999999999999999999999999999842100             


Q ss_pred             CCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCCh
Q 004790          499 PSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAP  578 (730)
Q Consensus       499 ~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~AP  578 (730)
                                                                                     ........+||+.|+||
T Consensus       146 ---------------------------------------------------------------~~~~~~~~~gt~~y~aP  162 (312)
T cd05585         146 ---------------------------------------------------------------DDDKTNTFCGTPEYLAP  162 (312)
T ss_pred             ---------------------------------------------------------------CCCccccccCCcccCCH
Confidence                                                                           00011235799999999


Q ss_pred             hhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchh
Q 004790          579 EIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKR  658 (730)
Q Consensus       579 Evl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~  658 (730)
                      |++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|.  .++.++++||.+||..||.+|+++ .
T Consensus       163 E~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~L~~dp~~R~~~-~  239 (312)
T cd05585         163 ELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFPD--GFDRDAKDLLIGLLSRDPTRRLGY-N  239 (312)
T ss_pred             HHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCCCCC--cCCHHHHHHHHHHcCCCHHHcCCC-C
Confidence            9999999999999999999999999999999887665555556666555553  578999999999999999999975 2


Q ss_pred             cHHHHHcCCCCCCCCcchh
Q 004790          659 GATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       659 ~a~elL~HPfF~~v~w~~~  677 (730)
                      .+.++++||||..++|..+
T Consensus       240 ~~~e~l~hp~~~~~~~~~~  258 (312)
T cd05585         240 GAQEIKNHPFFSQLSWKKL  258 (312)
T ss_pred             CHHHHHcCCCcCCCCHHHH
Confidence            4799999999999999765

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=3.5e-48  Score=417.92  Aligned_cols=272  Identities=39%  Similarity=0.707  Sum_probs=229.3

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGG  416 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GG  416 (730)
                      +.||+|+||.||++++..+++.||+|++.+...........+.+|+++|+.++||||++++++|+++..+||||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            46999999999999999999999999998876555566678889999999999999999999999999999999999999


Q ss_pred             CccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCC
Q 004790          417 DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLD  496 (730)
Q Consensus       417 sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~  496 (730)
                      +|..++...  ..+++..++.++.||+.||+|||++||+||||||+||||+.+|.+||+|||+++....           
T Consensus        81 ~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~-----------  147 (328)
T cd05593          81 ELFFHLSRE--RVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGIT-----------  147 (328)
T ss_pred             CHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCC-----------
Confidence            998877654  5789999999999999999999999999999999999999999999999999742100           


Q ss_pred             CCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccC
Q 004790          497 SDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYL  576 (730)
Q Consensus       497 ~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~  576 (730)
                                                                                       .......++||+.|+
T Consensus       148 -----------------------------------------------------------------~~~~~~~~~gt~~y~  162 (328)
T cd05593         148 -----------------------------------------------------------------DAATMKTFCGTPEYL  162 (328)
T ss_pred             -----------------------------------------------------------------cccccccccCCcCcc
Confidence                                                                             000112357999999


Q ss_pred             ChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          577 APEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       577 APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      |||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|  ..++.++++||++||.+||++|++.
T Consensus       163 aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~li~~~L~~dP~~R~~~  240 (328)
T cd05593         163 APEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDIKFP--RTLSADAKSLLSGLLIKDPNKRLGG  240 (328)
T ss_pred             ChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHHHHHHhccCCccCC--CCCCHHHHHHHHHHcCCCHHHcCCC
Confidence            99999999999999999999999999999999987765555555555555555  3578999999999999999999842


Q ss_pred             h-hcHHHHHcCCCCCCCCcchhc--cCCCCCCCCC
Q 004790          657 K-RGATEIKQHPFFEGVNWALIR--CSTPPEVPRP  688 (730)
Q Consensus       657 ~-~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p  688 (730)
                      . ..+.++++||||.+++|..+.  ...+|..|..
T Consensus       241 ~~~~~~~il~h~~~~~~~~~~~~~~~~~~~~~~~~  275 (328)
T cd05593         241 GPDDAKEIMRHSFFTGVNWQDVYDKKLVPPFKPQV  275 (328)
T ss_pred             CCCCHHHHhcCCCcCCCCHHHHHhCCCCCCcCCcC
Confidence            1 238999999999999998663  3344444443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-49  Score=426.76  Aligned_cols=269  Identities=32%  Similarity=0.559  Sum_probs=230.3

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH-----------HHHHHHHHHHHHHHhcCCCCCc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR-----------KKLTRAQTEREILQLLDHPFLP  394 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~-----------~~~~~~~~E~~IL~~L~HPnIV  394 (730)
                      +...+++|++++.||+|.||.|-+|++..++++||||++.|......           ..++++++|+.||++|+|||||
T Consensus        92 ~~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV  171 (576)
T KOG0585|consen   92 DRKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVV  171 (576)
T ss_pred             cceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCee
Confidence            34567999999999999999999999999999999999987655432           1245789999999999999999


Q ss_pred             cccccccc--cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCce
Q 004790          395 TLYTHFET--DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHI  472 (730)
Q Consensus       395 ~L~~~f~~--~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~v  472 (730)
                      +|+++..+  .+.+|||+|||..|.+...-...  ..+++.+||.|+++++.||+|||.+|||||||||.|+||+.+|++
T Consensus       172 ~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~--~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g~V  249 (576)
T KOG0585|consen  172 KLIEVLDDPESDKLYLVLEYCSKGEVKWCPPDK--PELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDGTV  249 (576)
T ss_pred             EEEEeecCcccCceEEEEEeccCCccccCCCCc--ccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcCCCcE
Confidence            99999976  46899999999999887643322  239999999999999999999999999999999999999999999


Q ss_pred             EEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCC
Q 004790          473 MLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSS  552 (730)
Q Consensus       473 KL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (730)
                      ||+|||.+.......                           .+.                                   
T Consensus       250 KIsDFGVs~~~~~~~---------------------------~~~-----------------------------------  267 (576)
T KOG0585|consen  250 KISDFGVSNEFPQGS---------------------------DEG-----------------------------------  267 (576)
T ss_pred             EeeccceeeecccCC---------------------------ccc-----------------------------------
Confidence            999999984321110                           000                                   


Q ss_pred             CCcccccccccccccccccCcccCChhhhccCC----CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccC
Q 004790          553 TLPELVAEPTAARSMSFVGTHEYLAPEIIKGEG----HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF  628 (730)
Q Consensus       553 ~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~----~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~  628 (730)
                               ....-...+|||.|+|||.+.+..    .+.+.|||||||+||.|++|+.||.+....+.+.+|++..+.|
T Consensus       268 ---------~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l~~KIvn~pL~f  338 (576)
T KOG0585|consen  268 ---------SDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELELFDKIVNDPLEF  338 (576)
T ss_pred             ---------cHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHHHHHHHHhcCcccC
Confidence                     000111258999999999998743    3789999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       629 p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |..+.+..+++|||.+||.+||++|++    +.+|+.|||...
T Consensus       339 P~~pe~~e~~kDli~~lL~KdP~~Ri~----l~~ik~Hpwvt~  377 (576)
T KOG0585|consen  339 PENPEINEDLKDLIKRLLEKDPEQRIT----LPDIKLHPWVTR  377 (576)
T ss_pred             CCcccccHHHHHHHHHHhhcChhheee----hhhheecceecc
Confidence            999999999999999999999999999    589999999864

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=3.2e-48  Score=415.99  Aligned_cols=272  Identities=38%  Similarity=0.694  Sum_probs=230.4

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+||.||+|+++.+++.||||++.+...........+..|.++++.+ +||||++++++|+++..+||||||++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            4699999999999999999999999999887655556667778899999866 899999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||++.....          
T Consensus        81 ~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~----------  148 (321)
T cd05591          81 GDLMFQIQRS--RKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGIL----------  148 (321)
T ss_pred             CcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceeccc----------
Confidence            9998877654  5689999999999999999999999999999999999999999999999998842100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        ........+||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~gt~~y  162 (321)
T cd05591         149 ------------------------------------------------------------------NGVTTTTFCGTPDY  162 (321)
T ss_pred             ------------------------------------------------------------------CCccccccccCccc
Confidence                                                                              00001235799999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      +|||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|.  .++.++.+||.+||.+||.+|++
T Consensus       163 ~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~ll~~~L~~dp~~R~~  240 (321)
T cd05591         163 IAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPV--WLSKEAVSILKAFMTKNPNKRLG  240 (321)
T ss_pred             cCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHhccCHHHcCC
Confidence            9999999999999999999999999999999999988776666666666655553  46889999999999999999996


Q ss_pred             chh---cHHHHHcCCCCCCCCcchhc--cCCCCCCCCC
Q 004790          656 VKR---GATEIKQHPFFEGVNWALIR--CSTPPEVPRP  688 (730)
Q Consensus       656 ~~~---~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p  688 (730)
                      +..   .+.++++||||..++|..+.  ...+|..|..
T Consensus       241 ~~~~~~~~~~~~~hp~~~~~~~~~~~~~~~~~~~~~~~  278 (321)
T cd05591         241 CVASQGGEDAIKQHPFFKEIDWVLLEQRKIKPPFKPKI  278 (321)
T ss_pred             CCCCCCCHHHHhcCCccCCCCHHHHHhCCCCCCCCCCC
Confidence            543   48999999999999999773  3344444443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=5.8e-48  Score=423.96  Aligned_cols=285  Identities=36%  Similarity=0.671  Sum_probs=235.7

Q ss_pred             cCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          324 RDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       324 ~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      +...+..++|++++.||+|+||.||+++++.+++.||+|++.+...........+.+|+.+++.++||||++++++|.++
T Consensus        36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~  115 (371)
T cd05622          36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  115 (371)
T ss_pred             hhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            34556779999999999999999999999999999999999876555555566788999999999999999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ..+|+|||||+||+|..++...   .+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||++...
T Consensus       116 ~~~~lv~Ey~~gg~L~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~  192 (371)
T cd05622         116 RYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKM  192 (371)
T ss_pred             CEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEc
Confidence            9999999999999999987653   5899999999999999999999999999999999999999999999999998532


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ...                                                                           ..
T Consensus       193 ~~~---------------------------------------------------------------------------~~  197 (371)
T cd05622         193 NKE---------------------------------------------------------------------------GM  197 (371)
T ss_pred             CcC---------------------------------------------------------------------------Cc
Confidence            100                                                                           00


Q ss_pred             ccccccccCcccCChhhhccCC----CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc--cccCCCCCCCChh
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEG----HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--QLRFPDSPATSYA  637 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~----~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~--~~~~p~~~~~s~~  637 (730)
                      ......+||+.|+|||++.+..    ++.++|||||||+||||++|+.||.+.+....+.++...  ...+|....++..
T Consensus       198 ~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  277 (371)
T cd05622         198 VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKE  277 (371)
T ss_pred             ccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHH
Confidence            0112357999999999998653    788999999999999999999999987665555555543  3556666678999


Q ss_pred             HHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc--chhccCCCCCCCCC
Q 004790          638 SRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW--ALIRCSTPPEVPRP  688 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w--~~~r~~~pp~~p~p  688 (730)
                      +++||.+||. +|..|++. ..++++++|+||++.+|  ..++...+|.+|..
T Consensus       278 ~~~li~~~L~-~~~~r~~r-~~~~ei~~h~~~~~~~~~~~~~~~~~~~~~~~~  328 (371)
T cd05622         278 AKNLICAFLT-DREVRLGR-NGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDL  328 (371)
T ss_pred             HHHHHHHHcC-ChhhhcCC-CCHHHHhcCcccCCCChhHHhcCCCCCCCCCCC
Confidence            9999999998 55554431 23799999999998655  45566666666653

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=5e-48  Score=415.49  Aligned_cols=276  Identities=35%  Similarity=0.677  Sum_probs=233.7

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeEEe
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +|++++.||+|+||+||+|+++.+++.||||++.+...........+..|+.+++.+. |++|++++++|+++..+|+||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            4889999999999999999999999999999998876555555667888999998885 578889999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++||+|..++...  ..+++.+++.|+.||+.||.|||++||+||||||+|||++.++++||+|||+++....     
T Consensus        81 Ey~~~g~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~-----  153 (323)
T cd05615          81 EYVNGGDLMYHIQQV--GKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMV-----  153 (323)
T ss_pred             cCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccCC-----
Confidence            999999999887654  5699999999999999999999999999999999999999999999999999742100     


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                             ........+
T Consensus       154 -----------------------------------------------------------------------~~~~~~~~~  162 (323)
T cd05615         154 -----------------------------------------------------------------------DGVTTRTFC  162 (323)
T ss_pred             -----------------------------------------------------------------------CCccccCcc
Confidence                                                                                   000112357


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      ||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+..+......+|.  ..+.++++||.+||.+||
T Consensus       163 gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~~l~~~p  240 (323)
T cd05615         163 GTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPK--SLSKEAVSICKGLMTKHP  240 (323)
T ss_pred             CCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCc--cCCHHHHHHHHHHcccCH
Confidence            999999999999999999999999999999999999999987666666666665555553  578899999999999999


Q ss_pred             CCcCCch-hcHHHHHcCCCCCCCCcchhcc--CCCCCCCC
Q 004790          651 QHRLGVK-RGATEIKQHPFFEGVNWALIRC--STPPEVPR  687 (730)
Q Consensus       651 ~~R~t~~-~~a~elL~HPfF~~v~w~~~r~--~~pp~~p~  687 (730)
                      .+|++.. ...+++++||||+.++|..+..  ..+|..|.
T Consensus       241 ~~R~~~~~~~~~~i~~h~~f~~~~~~~~~~~~~~~~~~~~  280 (323)
T cd05615         241 SKRLGCGPEGERDIREHAFFRRIDWDKLENREIQPPFKPK  280 (323)
T ss_pred             hhCCCCCCCCHHHHhcCcccCCCCHHHHhcCCCCcCccCc
Confidence            9999863 4578999999999999988743  34555443

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=8.5e-48  Score=414.76  Aligned_cols=263  Identities=38%  Similarity=0.731  Sum_probs=221.6

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+||.||+|+++.+++.||+|++++...........+++|+.+++.+ +||||++++++|+++..+|||||||+|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            4699999999999999999999999999887665556667788999999988 799999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|..++.+.  +.+++..++.|+.||+.||.|||++||+||||||+|||++.++.+||+|||+++....          
T Consensus        81 g~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~----------  148 (329)
T cd05588          81 GDLMFHMQRQ--RKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIR----------  148 (329)
T ss_pred             CCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCcccccccc----------
Confidence            9998877654  5799999999999999999999999999999999999999999999999998742100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        .......++||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~gt~~y  162 (329)
T cd05588         149 ------------------------------------------------------------------PGDTTSTFCGTPNY  162 (329)
T ss_pred             ------------------------------------------------------------------CCCccccccCCccc
Confidence                                                                              00011235899999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc--------ce-eeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA--------TL-FNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~--------~l-~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      +|||++.+..++.++|||||||++|||++|+.||.......        .+ ..+......+|  ..++.++.+||++||
T Consensus       163 ~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~li~~~L  240 (329)
T cd05588         163 IAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIP--RSLSVKASSVLKGFL  240 (329)
T ss_pred             cCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999996432111        11 12333444444  357889999999999


Q ss_pred             cCCCCCcCCch--hcHHHHHcCCCCCCCCcchhcc
Q 004790          647 VKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRC  679 (730)
Q Consensus       647 ~~DP~~R~t~~--~~a~elL~HPfF~~v~w~~~r~  679 (730)
                      .+||.+|+++.  .+++++++||||..++|..+..
T Consensus       241 ~~dP~~R~~~~~~~~~~~i~~hp~~~~~~~~~~~~  275 (329)
T cd05588         241 NKDPKERLGCHPQTGFRDIKSHPFFRNIDWDLLEQ  275 (329)
T ss_pred             ccCHHHcCCCCCCCCHHHHhcCCCCCCCCHHHHHh
Confidence            99999999854  3479999999999999987743

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=4.5e-48  Score=415.34  Aligned_cols=272  Identities=36%  Similarity=0.681  Sum_probs=230.2

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+||+||+|+++.+++.||||++.+...........+.+|..++..+ +||||++++++|.+...+|+||||++|
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            4699999999999999999999999999877655555666778899998876 799999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|..++...  ..+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....          
T Consensus        81 g~L~~~i~~~--~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~----------  148 (320)
T cd05590          81 GDLMFHIQKS--RRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIF----------  148 (320)
T ss_pred             chHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCc----------
Confidence            9999877654  5799999999999999999999999999999999999999999999999999742100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        ........+||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~gt~~y  162 (320)
T cd05590         149 ------------------------------------------------------------------NGKTTSTFCGTPDY  162 (320)
T ss_pred             ------------------------------------------------------------------CCCcccccccCccc
Confidence                                                                              00011235799999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      +|||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|.  .++.++++||++||.+||.+|++
T Consensus       163 ~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~li~~~L~~dP~~R~~  240 (320)
T cd05590         163 IAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPT--WLSQDAVDILKAFMTKNPTMRLG  240 (320)
T ss_pred             cCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHcccCHHHCCC
Confidence            9999999999999999999999999999999999987766666666655555543  47899999999999999999999


Q ss_pred             ch--hcHHHHHcCCCCCCCCcchh--ccCCCCCCCCC
Q 004790          656 VK--RGATEIKQHPFFEGVNWALI--RCSTPPEVPRP  688 (730)
Q Consensus       656 ~~--~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p  688 (730)
                      +.  .+.+++++||||..++|..+  +...||..|+.
T Consensus       241 ~~~~~~~~~~~~h~~f~~~~~~~~~~~~~~~~~~~~~  277 (320)
T cd05590         241 SLTLGGEEAILRHPFFKELDWEKLNRRQIEPPFRPRI  277 (320)
T ss_pred             CCCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCcCCCC
Confidence            52  23489999999999999876  34455555554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=7.2e-48  Score=413.59  Aligned_cols=273  Identities=39%  Similarity=0.689  Sum_probs=228.5

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHH-HHHhcCCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE-ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~-IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+||+||+|+++.+++.||||++.+...........+.+|.. +++.++||||++++++|+++..+|+||||++|
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            46999999999999999999999999998765544444555666665 46789999999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|..++++.  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++.....          
T Consensus        81 g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~----------  148 (323)
T cd05575          81 GELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIE----------  148 (323)
T ss_pred             CCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCccccc----------
Confidence            9998887764  5789999999999999999999999999999999999999999999999999742100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        ........+||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~gt~~y  162 (323)
T cd05575         149 ------------------------------------------------------------------HSKTTSTFCGTPEY  162 (323)
T ss_pred             ------------------------------------------------------------------CCCccccccCChhh
Confidence                                                                              00011235799999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      +|||++.+..++.++|||||||++|||++|+.||.+.+....+.++......++  +..+..+.+||++||.+||.+|++
T Consensus       163 ~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~li~~~l~~~p~~R~~  240 (323)
T cd05575         163 LAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKPLRLK--PNISVSARHLLEGLLQKDRTKRLG  240 (323)
T ss_pred             cChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHhhcCHHhCCC
Confidence            999999999999999999999999999999999998766555555655555444  356899999999999999999999


Q ss_pred             chhcHHHHHcCCCCCCCCcchhc--cCCCCCCCCCC
Q 004790          656 VKRGATEIKQHPFFEGVNWALIR--CSTPPEVPRPM  689 (730)
Q Consensus       656 ~~~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p~  689 (730)
                      .++...++++||||..++|..+.  ...+|..|...
T Consensus       241 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (323)
T cd05575         241 AKDDFLEIKNHVFFSSINWDDLVNKKITPPFNPNVS  276 (323)
T ss_pred             CCCCHHHHHcCCCcCCCCHHHHhhccCCCCcCCCCC
Confidence            87778999999999999998763  33455555433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-47  Score=412.12  Aligned_cols=280  Identities=37%  Similarity=0.654  Sum_probs=230.4

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||+||++++..+++.||+|++.+...........+.+|+.+++.++|+||++++++|+++.++|+||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            47999999999999999999999999999999998766555556677889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++||+|..++.+. ...+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||++......    
T Consensus        81 e~~~g~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~----  155 (331)
T cd05597          81 DYYVGGDLLTLLSKF-EDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLAD----  155 (331)
T ss_pred             ecCCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCC----
Confidence            999999999988653 356899999999999999999999999999999999999999999999999998432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                             ........+
T Consensus       156 -----------------------------------------------------------------------~~~~~~~~~  164 (331)
T cd05597         156 -----------------------------------------------------------------------GTVQSNVAV  164 (331)
T ss_pred             -----------------------------------------------------------------------CCcccccee
Confidence                                                                                   000011247


Q ss_pred             cCcccCChhhhcc-----CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc--ccCCC-CCCCChhHHHHH
Q 004790          571 GTHEYLAPEIIKG-----EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ--LRFPD-SPATSYASRDLI  642 (730)
Q Consensus       571 GT~~Y~APEvl~g-----~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~--~~~p~-~~~~s~~~~dLI  642 (730)
                      ||+.|+|||++.+     ..++.++|||||||++|||++|+.||.+....+.+..+....  +.++. ...++.++++||
T Consensus       165 gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~li  244 (331)
T cd05597         165 GTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEEAKDLI  244 (331)
T ss_pred             ccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHHHHHHHcCCCcccCCCccCCCCHHHHHHH
Confidence            9999999999974     347889999999999999999999998765554444444322  23332 234789999999


Q ss_pred             HhhhcCCCCC--cCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCC
Q 004790          643 RGLLVKEPQH--RLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPME  690 (730)
Q Consensus       643 ~~lL~~DP~~--R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~  690 (730)
                      ++||..++++  |++    +.++++||||.+++|..+....+|.+|....
T Consensus       245 ~~ll~~~~~r~~r~~----~~~~l~hp~~~~~~~~~~~~~~~~~~~~~~~  290 (331)
T cd05597         245 RRLICSPETRLGRNG----LQDFKDHPFFEGIDWDNIRNSTAPYVPEVSS  290 (331)
T ss_pred             HHHccCcccccCCCC----HHHHhcCCCCCCCCHHHHhhCCCCccCcCCC
Confidence            9999764333  556    7999999999999999988777776665433

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=2e-47  Score=412.03  Aligned_cols=280  Identities=35%  Similarity=0.631  Sum_probs=232.4

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||+||+++++.+++.||+|++.+...........+.+|+.++..++|+||++++++|+++..+||||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            47999999999999999999999999999999998765555555566888999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++||+|..++.+. ...+++..++.|+.||+.||+|||++||+||||||+|||++.++++||+|||++......    
T Consensus        81 ey~~~g~L~~~l~~~-~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~----  155 (332)
T cd05623          81 DYYVGGDLLTLLSKF-EDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMED----  155 (332)
T ss_pred             eccCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheecccC----
Confidence            999999999988753 246899999999999999999999999999999999999999999999999998432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                             ........+
T Consensus       156 -----------------------------------------------------------------------~~~~~~~~~  164 (332)
T cd05623         156 -----------------------------------------------------------------------GTVQSSVAV  164 (332)
T ss_pred             -----------------------------------------------------------------------Ccceecccc
Confidence                                                                                   000111347


Q ss_pred             cCcccCChhhhcc-----CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccccc--CCCC-CCCChhHHHHH
Q 004790          571 GTHEYLAPEIIKG-----EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR--FPDS-PATSYASRDLI  642 (730)
Q Consensus       571 GT~~Y~APEvl~g-----~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~--~p~~-~~~s~~~~dLI  642 (730)
                      ||+.|+|||++.+     ..++.++|||||||+||||++|+.||.+.+....+.++.....+  +|.. ..++.++++||
T Consensus       165 gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li  244 (332)
T cd05623         165 GTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLI  244 (332)
T ss_pred             cCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCccccCCCccccCCHHHHHHH
Confidence            9999999999973     45789999999999999999999999987666666555544332  3322 35789999999


Q ss_pred             HhhhcCCCCC--cCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCC
Q 004790          643 RGLLVKEPQH--RLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPME  690 (730)
Q Consensus       643 ~~lL~~DP~~--R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~  690 (730)
                      ++||..++++  |++    ++++++||||.+++|..++...+|.+|....
T Consensus       245 ~~ll~~~~~r~~r~~----~~~~~~h~~f~~~~~~~~~~~~~~~~~~~~~  290 (332)
T cd05623         245 RRLICSREHRLGQNG----IEDFKQHPFFTGIDWDNIRNCEAPYIPEVSS  290 (332)
T ss_pred             HHHccChhhhcCCCC----HHHHhCCCCcCCCCHHHHhhCCCCccCCCCC
Confidence            9999865544  455    7999999999999999998777777765443

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=1.1e-47  Score=411.54  Aligned_cols=259  Identities=39%  Similarity=0.766  Sum_probs=220.2

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHh-cCCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL-LDHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~-L~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+||.||+|++..+++.||||++++..............|..++.. ++||||++++++|+.+..+|+||||++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            469999999999999999999999999987655444555566778888775 4899999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|..++...  ..+++..++.|+.||+.||.|||++||+||||||+|||++.++.+||+|||++......         
T Consensus        81 g~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~---------  149 (316)
T cd05592          81 GDLMFHIQSS--GRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNG---------  149 (316)
T ss_pred             CcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCC---------
Confidence            9998887654  56999999999999999999999999999999999999999999999999998431000         


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                         .......+||+.|
T Consensus       150 -------------------------------------------------------------------~~~~~~~~gt~~y  162 (316)
T cd05592         150 -------------------------------------------------------------------EGKASTFCGTPDY  162 (316)
T ss_pred             -------------------------------------------------------------------CCccccccCCccc
Confidence                                                                               0011235799999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      +|||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|  ..++.++++||.+||..||.+|++
T Consensus       163 ~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~ll~~~l~~~P~~R~~  240 (316)
T cd05592         163 IAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDRPHFP--RWISKEAKDCLSKLFERDPTKRLG  240 (316)
T ss_pred             cCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHccCCHHHcCC
Confidence            999999999999999999999999999999999998766555555544444444  357889999999999999999999


Q ss_pred             chhcHHHHHcCCCCCCCCcchhc
Q 004790          656 VKRGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       656 ~~~~a~elL~HPfF~~v~w~~~r  678 (730)
                      +   +.++++||||..++|..+.
T Consensus       241 ~---~~~l~~h~~~~~~~~~~~~  260 (316)
T cd05592         241 V---DGDIRQHPFFRGIDWERLE  260 (316)
T ss_pred             C---hHHHHcCcccCCCCHHHHH
Confidence            6   5789999999999998774

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.1e-49  Score=425.93  Aligned_cols=262  Identities=30%  Similarity=0.415  Sum_probs=221.0

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc--ce
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD--RF  405 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~--~~  405 (730)
                      ...+.|+.+++||+|.||.||+|++..||+.||||.++.+... .....-+.||+.||++|+||||++|.+...+.  ..
T Consensus       114 r~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~-~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~s  192 (560)
T KOG0600|consen  114 RRADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEK-EGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGS  192 (560)
T ss_pred             cchHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCC-CcchHHHHHHHHHHHhcCCCcccceeeEEEecCCce
Confidence            3457899999999999999999999999999999999876533 34556678999999999999999999988765  78


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|||+||| .-||.-++.. ++-.|++.+++.|++||+.||+|||.+||+|||||..|||||.+|.+||+|||||+.+..
T Consensus       193 iYlVFeYM-dhDL~GLl~~-p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~  270 (560)
T KOG0600|consen  193 IYLVFEYM-DHDLSGLLSS-PGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTP  270 (560)
T ss_pred             EEEEEecc-cchhhhhhcC-CCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceeeccC
Confidence            99999999 6688887665 456899999999999999999999999999999999999999999999999999965321


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ..                                                                           ...
T Consensus       271 ~~---------------------------------------------------------------------------~~~  275 (560)
T KOG0600|consen  271 SG---------------------------------------------------------------------------SAP  275 (560)
T ss_pred             CC---------------------------------------------------------------------------Ccc
Confidence            10                                                                           011


Q ss_pred             ccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc----------cccCCC----
Q 004790          566 SMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ----------QLRFPD----  630 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~----------~~~~p~----  630 (730)
                      .++.|-|.||+|||+|+|.. |+.++|+||+||||.||++|++.|.|.++.+++..|..-          ...+|.    
T Consensus       276 ~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~  355 (560)
T KOG0600|consen  276 YTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIF  355 (560)
T ss_pred             cccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCccccc
Confidence            23458899999999999975 999999999999999999999999999887777665420          011121    


Q ss_pred             -------------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          631 -------------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       631 -------------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                                   ...++..+.+|+..||..||.+|.|    |.++|+|+||..
T Consensus       356 kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~t----A~~aL~seyF~t  405 (560)
T KOG0600|consen  356 KPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGT----ASSALQSEYFTT  405 (560)
T ss_pred             CCCCcccchHHHHhccCCHHHHHHHHHHhccCcccccc----HHHHhcCccccc
Confidence                         1345677889999999999999999    899999999953

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=1.3e-47  Score=412.23  Aligned_cols=272  Identities=39%  Similarity=0.693  Sum_probs=229.4

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGG  416 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GG  416 (730)
                      +.||+|+||.||+++++.+++.||+|++++...........+.+|+++|+.++||||++++++|..+..+||||||++||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            46999999999999999999999999998876555566677889999999999999999999999999999999999999


Q ss_pred             CccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCC
Q 004790          417 DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLD  496 (730)
Q Consensus       417 sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~  496 (730)
                      +|..++.+.  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....           
T Consensus        81 ~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~-----------  147 (323)
T cd05595          81 ELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS-----------  147 (323)
T ss_pred             cHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccC-----------
Confidence            998877654  5789999999999999999999999999999999999999999999999998742100           


Q ss_pred             CCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccC
Q 004790          497 SDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYL  576 (730)
Q Consensus       497 ~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~  576 (730)
                                                                                       .......++||+.|+
T Consensus       148 -----------------------------------------------------------------~~~~~~~~~gt~~y~  162 (323)
T cd05595         148 -----------------------------------------------------------------DGATMKTFCGTPEYL  162 (323)
T ss_pred             -----------------------------------------------------------------CCCccccccCCcCcC
Confidence                                                                             000012357999999


Q ss_pred             ChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          577 APEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       577 APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      |||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|.  .++.++++||.+||.+||.+|++.
T Consensus       163 aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~li~~~L~~dP~~R~~~  240 (323)
T cd05595         163 APEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPR--TLSPEAKSLLAGLLKKDPKQRLGG  240 (323)
T ss_pred             CcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHccCCHHHhCCC
Confidence            999999999999999999999999999999999877665555555555555553  578999999999999999999943


Q ss_pred             h-hcHHHHHcCCCCCCCCcchhc--cCCCCCCCCC
Q 004790          657 K-RGATEIKQHPFFEGVNWALIR--CSTPPEVPRP  688 (730)
Q Consensus       657 ~-~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p  688 (730)
                      . ..+.++++||||.+++|..+.  ...||..|..
T Consensus       241 ~~~~~~~~l~h~~~~~~~~~~~~~~~~~~~~~~~~  275 (323)
T cd05595         241 GPSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQV  275 (323)
T ss_pred             CCCCHHHHHcCCCcCCCCHHHHHhCCCCCCcCCCC
Confidence            1 238999999999999998764  3334444443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.5e-47  Score=406.14  Aligned_cols=311  Identities=59%  Similarity=1.027  Sum_probs=254.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      .+|++++.||+|+||.||+|.+..+++.||||.+.+...........+.+|+++|+.++||||+++++.+.++...|+||
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            36999999999999999999999999999999998776555456678899999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+.|++|.+++.+..+..+++..++.++.||+.||+|||+.||+||||||+||||+.++.++|+|||++..........
T Consensus        81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~  160 (316)
T cd05574          81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPV  160 (316)
T ss_pred             EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhccccccccc
Confidence            99999999998887666789999999999999999999999999999999999999999999999999985432111000


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                      ...          ...                            .    +..     ........+...+........++
T Consensus       161 ~~~----------~~~----------------------------~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~  193 (316)
T cd05574         161 SKA----------LRK----------------------------G----SRR-----SSVNSIPSETFSEEPSFRSNSFV  193 (316)
T ss_pred             ccc----------ccc----------------------------c----ccc-----ccccccchhhhcccccCCCCCCc
Confidence            000          000                            0    000     00000000111122222334578


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      ||..|+|||++.+..++.++|||||||++|+|++|+.||.+.+....+.++......++.....+.++++||.+||..||
T Consensus       194 g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  273 (316)
T cd05574         194 GTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDETFSNILKKEVTFPGSPPVSSSARDLIRKLLVKDP  273 (316)
T ss_pred             CccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHhcCCccCCCccccCHHHHHHHHHHccCCH
Confidence            99999999999999999999999999999999999999998877777766666666666655578999999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRP  688 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p  688 (730)
                      ++|++.+.+++++++||||++++|..++-..||.+|.+
T Consensus       274 ~~R~s~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  311 (316)
T cd05574         274 SKRLGSKRGAAEIKQHPFFRGVNWALIRHTTPPIIPRP  311 (316)
T ss_pred             hHCCCchhhHHHHHcCchhhcCChhhcccCCCCCCCCc
Confidence            99999888899999999999999999998888887765

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=2.2e-47  Score=410.19  Aligned_cols=262  Identities=39%  Similarity=0.688  Sum_probs=222.1

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHH-HHHhcCCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE-ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~-IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+||+||+|++..+++.||+|++.+...........+..|.. +++.++||||++++++|++++.+|+||||++|
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            46999999999999999999999999998765443333344455544 56789999999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....          
T Consensus        81 ~~L~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~----------  148 (325)
T cd05602          81 GELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE----------  148 (325)
T ss_pred             CcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCccccc----------
Confidence            9999887754  5688999999999999999999999999999999999999999999999999842100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        .......++||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~gt~~y  162 (325)
T cd05602         149 ------------------------------------------------------------------HNGTTSTFCGTPEY  162 (325)
T ss_pred             ------------------------------------------------------------------CCCCcccccCCccc
Confidence                                                                              00011235799999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      +|||++.+..++.++|||||||++|||++|+.||.+.+....+.++......++  +.++..+++||.+||++||.+|++
T Consensus       163 ~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~li~~~l~~~p~~R~~  240 (325)
T cd05602         163 LAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLK--PNITNSARHLLEGLLQKDRTKRLG  240 (325)
T ss_pred             cCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHHHHHHHHhCCcCCC--CCCCHHHHHHHHHHcccCHHHCCC
Confidence            999999999999999999999999999999999998766665555555444433  467899999999999999999999


Q ss_pred             chhcHHHHHcCCCCCCCCcchhc
Q 004790          656 VKRGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       656 ~~~~a~elL~HPfF~~v~w~~~r  678 (730)
                      ..+...++++|+||..++|..+.
T Consensus       241 ~~~~~~~i~~~~~~~~~~~~~~~  263 (325)
T cd05602         241 AKDDFMEIKNHIFFSPINWDDLI  263 (325)
T ss_pred             CCCCHHHHhcCcccCCCCHHHHH
Confidence            88888899999999999998763

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=2.7e-47  Score=411.15  Aligned_cols=271  Identities=38%  Similarity=0.718  Sum_probs=222.8

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+||+||+|+++.+++.||+|++++...........+++|+.++..+ +||||++++++|.++..+|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            4699999999999999999999999999887655556667788999998776 899999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|..++...  +.+++..++.|+.||+.||+|||++||+||||||+|||++.++++||+|||+++....          
T Consensus        81 ~~L~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~----------  148 (329)
T cd05618          81 GDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR----------  148 (329)
T ss_pred             CCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccC----------
Confidence            9998877654  5799999999999999999999999999999999999999999999999999742100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        .......++||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~gt~~y  162 (329)
T cd05618         149 ------------------------------------------------------------------PGDTTSTFCGTPNY  162 (329)
T ss_pred             ------------------------------------------------------------------CCCccccccCCccc
Confidence                                                                              00011235799999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc--------ce-eeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA--------TL-FNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~--------~l-~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      +|||++.+..++.++|||||||++|||++|+.||.......        .+ ..+......+|  ...+..+++||++||
T Consensus       163 ~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p--~~~~~~~~~ll~~~L  240 (329)
T cd05618         163 IAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIP--RSLSVKAASVLKSFL  240 (329)
T ss_pred             cCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCCC--CCCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999996322111        11 12333444444  357889999999999


Q ss_pred             cCCCCCcCCch--hcHHHHHcCCCCCCCCcchhcc--CCCCCCCC
Q 004790          647 VKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRC--STPPEVPR  687 (730)
Q Consensus       647 ~~DP~~R~t~~--~~a~elL~HPfF~~v~w~~~r~--~~pp~~p~  687 (730)
                      .+||.+|+++.  .+++++++||||+.++|..+..  ..||..|.
T Consensus       241 ~~dP~~R~~~~~~~~~~~i~~hp~f~~~~~~~~~~~~~~~~~~~~  285 (329)
T cd05618         241 NKDPKERLGCHPQTGFADIQGHPFFRNVDWDLMEQKQVVPPFKPN  285 (329)
T ss_pred             cCCHHHcCCCCCCCCHHHHhcCCCCCCCCHHHHHcCCCCcCccCC
Confidence            99999999953  3468999999999999987642  33444443

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=9.1e-48  Score=413.17  Aligned_cols=272  Identities=40%  Similarity=0.706  Sum_probs=228.2

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGG  416 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GG  416 (730)
                      +.||+|+||+||++++..+++.||+|++.+...........+.+|+++++.++||||++++++|.++..+||||||++||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            46999999999999999999999999998876555556677888999999999999999999999999999999999999


Q ss_pred             CccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          417 DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       417 sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      +|..++.+.  +.+++..++.++.||+.||.|||+ +||+||||||+|||++.+|.+||+|||+++....          
T Consensus        81 ~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~----------  148 (325)
T cd05594          81 ELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK----------  148 (325)
T ss_pred             cHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCC----------
Confidence            998877654  578999999999999999999997 8999999999999999999999999999742100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        ........+||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~gt~~y  162 (325)
T cd05594         149 ------------------------------------------------------------------DGATMKTFCGTPEY  162 (325)
T ss_pred             ------------------------------------------------------------------CCcccccccCCccc
Confidence                                                                              00001235799999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      +|||++.+..++.++|||||||+||||++|+.||.+.+....+..+......+|.  .++.++++||.+||.+||++|++
T Consensus       163 ~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~~L~~dP~~R~~  240 (325)
T cd05594         163 LAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPR--TLSPEAKSLLSGLLKKDPKQRLG  240 (325)
T ss_pred             CCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHhhcCHHHhCC
Confidence            9999999999999999999999999999999999887655555555555555553  57899999999999999999984


Q ss_pred             ch-hcHHHHHcCCCCCCCCcchhc--cCCCCCCCCC
Q 004790          656 VK-RGATEIKQHPFFEGVNWALIR--CSTPPEVPRP  688 (730)
Q Consensus       656 ~~-~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p  688 (730)
                      .. ..+.++++||||.++.|....  ...+|..+..
T Consensus       241 ~~~~~~~~il~h~~~~~~~~~~~~~~~~~~~~~~~~  276 (325)
T cd05594         241 GGPDDAKEIMQHKFFAGIVWQDVYEKKLVPPFKPQV  276 (325)
T ss_pred             CCCCCHHHHhcCCCcCCCCHHHHHhCCCCCCcCCcC
Confidence            21 238999999999999998663  3345554443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=3.1e-47  Score=410.77  Aligned_cols=283  Identities=35%  Similarity=0.641  Sum_probs=233.4

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||+||+++++.+++.||+|++.+...........+.+|+.++..++|+||++++++|++++.+||||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            47999999999999999999999999999999998765555555667888999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++||+|..++.+. ...+++..++.|+.||+.||+|||++||+||||||+|||++.+|.+||+|||++......    
T Consensus        81 Ey~~gg~L~~~l~~~-~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~----  155 (331)
T cd05624          81 DYYVGGDLLTLLSKF-EDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQD----  155 (331)
T ss_pred             eCCCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccCC----
Confidence            999999999988753 246899999999999999999999999999999999999999999999999998532100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                             ........+
T Consensus       156 -----------------------------------------------------------------------~~~~~~~~~  164 (331)
T cd05624         156 -----------------------------------------------------------------------GTVQSSVAV  164 (331)
T ss_pred             -----------------------------------------------------------------------Cceeecccc
Confidence                                                                                   000111247


Q ss_pred             cCcccCChhhhcc-----CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc--ccCCCC-CCCChhHHHHH
Q 004790          571 GTHEYLAPEIIKG-----EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ--LRFPDS-PATSYASRDLI  642 (730)
Q Consensus       571 GT~~Y~APEvl~g-----~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~--~~~p~~-~~~s~~~~dLI  642 (730)
                      ||+.|+|||++.+     ..++.++|||||||+||||++|+.||.+.+....+..+....  +.+|.. ..++.++++||
T Consensus       165 gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~li  244 (331)
T cd05624         165 GTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLI  244 (331)
T ss_pred             CCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHHHHHHHHcCCCcccCCCccccCCHHHHHHH
Confidence            9999999999986     457889999999999999999999998876555555554433  223322 34688999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCCc
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEA  691 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~~  691 (730)
                      .+||..++ +|+. ...++++++||||++++|..++...+|.+|....+
T Consensus       245 ~~ll~~~~-~~~~-~~~~~~~~~h~~f~~~~~~~~~~~~~~~~p~~~~~  291 (331)
T cd05624         245 QRLICSRE-RRLG-QNGIEDFKKHAFFEGIDWENIRNLEAPYIPDVSSP  291 (331)
T ss_pred             HHHccCch-hhcC-CCCHHHHhcCCCcCCCCHHHHhhCCCCccCCCCCc
Confidence            99999755 4433 12479999999999999999988877777765443

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=3.3e-47  Score=407.75  Aligned_cols=262  Identities=40%  Similarity=0.695  Sum_probs=222.5

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHH-HHHhcCCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE-ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~-IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+||.||+|++..+++.||+|++.+...........+..|+. +++.++||||++++++|.+.+.+|+||||++|
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999999999999999998766544444455666654 67889999999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|...+.+.  ..+++..++.|+.||+.||.|||++||+||||||+||||+.+|++||+|||++.....          
T Consensus        81 ~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~----------  148 (321)
T cd05603          81 GELFFHLQRE--RCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVE----------  148 (321)
T ss_pred             CCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCC----------
Confidence            9998877654  5789999999999999999999999999999999999999999999999998732100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        .......++||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~gt~~y  162 (321)
T cd05603         149 ------------------------------------------------------------------PEETTSTFCGTPEY  162 (321)
T ss_pred             ------------------------------------------------------------------CCCccccccCCccc
Confidence                                                                              00011235799999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      +|||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|  ...+.++.+||.+||++||.+|++
T Consensus       163 ~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~li~~~l~~~p~~R~~  240 (321)
T cd05603         163 LAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHKPLQLP--GGKTVAACDLLVGLLHKDQRRRLG  240 (321)
T ss_pred             CCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHHHHHHHhcCCCCCC--CCCCHHHHHHHHHHccCCHhhcCC
Confidence            999999999999999999999999999999999988765555555655555544  356889999999999999999999


Q ss_pred             chhcHHHHHcCCCCCCCCcchhc
Q 004790          656 VKRGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       656 ~~~~a~elL~HPfF~~v~w~~~r  678 (730)
                      ....+.++++|+||..++|..+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~  263 (321)
T cd05603         241 AKADFLEIKNHVFFSPINWDDLY  263 (321)
T ss_pred             CCCCHHHHhCCCCcCCCCHHHHh
Confidence            77678899999999999998763

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-49  Score=406.80  Aligned_cols=251  Identities=25%  Similarity=0.380  Sum_probs=213.7

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccc-cccccce-e
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT-HFETDRF-S  406 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~-~f~~~~~-l  406 (730)
                      .+.+|+++++||.|+||+||++++..+|+.+|.|.|.-. ..+.+..+.+..|+.+|++|+|||||++|+ .|..+.. +
T Consensus        17 ~l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~-~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evl   95 (375)
T KOG0591|consen   17 TLADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFG-MMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVL   95 (375)
T ss_pred             cHHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchh-hccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhh
Confidence            346799999999999999999999999999999999744 344566677889999999999999999999 5555555 9


Q ss_pred             eEEeeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHh--cc--eeecccCCccEEecCCCceEEeccccc
Q 004790          407 CLVMEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHM--LG--VVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~--~g--IVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      +||||||.+|||..++++.  ..+.++|..++.|+.|++.||.+||.  ..  |+||||||.||+|+.+|.+||+||||+
T Consensus        96 nivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~  175 (375)
T KOG0591|consen   96 NIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLG  175 (375)
T ss_pred             HHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhH
Confidence            9999999999999988753  34689999999999999999999998  44  999999999999999999999999999


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +.+..                                                                           
T Consensus       176 r~l~s---------------------------------------------------------------------------  180 (375)
T KOG0591|consen  176 RFLSS---------------------------------------------------------------------------  180 (375)
T ss_pred             hHhcc---------------------------------------------------------------------------
Confidence            65321                                                                           


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHH
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRD  640 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~d  640 (730)
                       ......++||||.||+||++.+.+|+.++|||||||++|||+.-++||.|.+-...-.+|-++.+..-....+|.+++.
T Consensus       181 -~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~~~p~~~YS~~l~~  259 (375)
T KOG0591|consen  181 -KTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYPPLPDEHYSTDLRE  259 (375)
T ss_pred             -hhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCCCCcHHHhhhHHHH
Confidence             1122357899999999999999999999999999999999999999999984444444555554431122467899999


Q ss_pred             HHHhhhcCCCCCcCCc
Q 004790          641 LIRGLLVKEPQHRLGV  656 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~  656 (730)
                      ||..|+..||+.||+.
T Consensus       260 li~~ci~vd~~~RP~t  275 (375)
T KOG0591|consen  260 LINMCIAVDPEQRPDT  275 (375)
T ss_pred             HHHHHccCCcccCCCc
Confidence            9999999999999984

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=4.1e-47  Score=409.11  Aligned_cols=271  Identities=37%  Similarity=0.711  Sum_probs=224.9

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+||+||+|++..+++.||+|++.+...........+.+|+.++..+ +||||+.++++|++...+|+||||++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            4699999999999999999999999999987666666677889999999888 799999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|..++...  +.+++..++.|+.||+.||+|||++||+||||||+|||++.++++||+|||+++....          
T Consensus        81 ~~L~~~~~~~--~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~----------  148 (327)
T cd05617          81 GDLMFHMQRQ--RKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLG----------  148 (327)
T ss_pred             CcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceeccC----------
Confidence            9998877654  5799999999999999999999999999999999999999999999999998842100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        .......++||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~gt~~y  162 (327)
T cd05617         149 ------------------------------------------------------------------PGDTTSTFCGTPNY  162 (327)
T ss_pred             ------------------------------------------------------------------CCCceecccCCccc
Confidence                                                                              00011235899999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc------cceee-eecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR------ATLFN-VVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~------~~l~~-i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      +|||++.+..++.++|||||||+||||++|+.||......      ..+.. +......+|  ..++..+++||++||.+
T Consensus       163 ~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~li~~~L~~  240 (327)
T cd05617         163 IAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIP--RFLSVKASHVLKGFLNK  240 (327)
T ss_pred             CCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999653221      11222 223333344  45788999999999999


Q ss_pred             CCCCcCCch--hcHHHHHcCCCCCCCCcchhccC--CCCCCCC
Q 004790          649 EPQHRLGVK--RGATEIKQHPFFEGVNWALIRCS--TPPEVPR  687 (730)
Q Consensus       649 DP~~R~t~~--~~a~elL~HPfF~~v~w~~~r~~--~pp~~p~  687 (730)
                      ||.+|+++.  .+..++++||||+.++|..+...  .+|..|.
T Consensus       241 dP~~R~~~~~~~~~~~i~~h~~f~~~~~~~~~~~~~~~~~~~~  283 (327)
T cd05617         241 DPKERLGCQPQTGFSDIKSHTFFRSIDWDLLEKKQVTPPFKPQ  283 (327)
T ss_pred             CHHHcCCCCCCCCHHHHHcCCCCCCCCHHHHHhCCCCCCccCC
Confidence            999999863  35789999999999999987533  3444444

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=5.4e-48  Score=392.25  Aligned_cols=258  Identities=29%  Similarity=0.442  Sum_probs=217.4

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      .+|..+++||+|.||.||+|++..||+.||||.++.....+ ..-..+.||+++|+.++|+||+.|+++|-....+.||+
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kd-Gi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVf   80 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKD-GINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVF   80 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeecccccc-CccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEE
Confidence            46889999999999999999999999999999997664332 22345789999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||| ..||..+++.. ...|+..+++.|+.+++.||+|||++.|+||||||.|+||+.+|.+||+|||||+.+..     
T Consensus        81 Efm-~tdLe~vIkd~-~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~-----  153 (318)
T KOG0659|consen   81 EFM-PTDLEVVIKDK-NIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGS-----  153 (318)
T ss_pred             Eec-cccHHHHhccc-ccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCC-----
Confidence            999 67888876643 57899999999999999999999999999999999999999999999999999964321     


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                  .+.                           ....-|
T Consensus       154 --------------------------------------------p~~---------------------------~~~~~V  162 (318)
T KOG0659|consen  154 --------------------------------------------PNR---------------------------IQTHQV  162 (318)
T ss_pred             --------------------------------------------CCc---------------------------ccccce
Confidence                                                        000                           001127


Q ss_pred             cCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec---ccc-----------------cCC
Q 004790          571 GTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG---QQL-----------------RFP  629 (730)
Q Consensus       571 GT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~---~~~-----------------~~p  629 (730)
                      -|.||+|||++.|.. |+..+||||+|||+.||+.|.+.|.|.++.+++..|..   ...                 .+|
T Consensus       163 ~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P  242 (318)
T KOG0659|consen  163 VTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFP  242 (318)
T ss_pred             eeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCC
Confidence            899999999999875 89999999999999999999999999988777755432   100                 011


Q ss_pred             C------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          630 D------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       630 ~------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      .      .+..+.++-||+.+||.+||.+|++    +.|+|+|+||..
T Consensus       243 ~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rit----a~qaL~~~yf~~  286 (318)
T KOG0659|consen  243 KPPLNNLFPAASSDALDLLSKMLTYNPKKRIT----ASQALKHPYFKS  286 (318)
T ss_pred             CCccccccccccHHHHHHHHhhhccCchhccc----HHHHhcchhhhc
Confidence            1      1345678899999999999999999    799999999985

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=2e-47  Score=409.61  Aligned_cols=269  Identities=37%  Similarity=0.710  Sum_probs=223.3

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+||.||+|+++.+++.||+|++++..............|..++..+ +||||++++++|++++++|+||||+.|
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            4699999999999999999999999999876544334556677788888754 999999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|..++...  ..+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....          
T Consensus        81 g~L~~~i~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~----------  148 (316)
T cd05620          81 GDLMFHIQDK--GRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVF----------  148 (316)
T ss_pred             CcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeeccc----------
Confidence            9998877654  5789999999999999999999999999999999999999999999999998742100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        .......++||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~gt~~y  162 (316)
T cd05620         149 ------------------------------------------------------------------GDNRASTFCGTPDY  162 (316)
T ss_pred             ------------------------------------------------------------------CCCceeccCCCcCc
Confidence                                                                              00011235799999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      +|||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|.  .++.++++||++||..||.+|++
T Consensus       163 ~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~dP~~R~~  240 (316)
T cd05620         163 IAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPR--WITKESKDILEKLFERDPTRRLG  240 (316)
T ss_pred             cCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHHccCCHHHcCC
Confidence            9999999999999999999999999999999999877655444444444444443  47889999999999999999999


Q ss_pred             chhcHHHHHcCCCCCCCCcchhc--cCCCCCCCCC
Q 004790          656 VKRGATEIKQHPFFEGVNWALIR--CSTPPEVPRP  688 (730)
Q Consensus       656 ~~~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p  688 (730)
                      +   .+++++||||+.++|..+.  ...+|..|..
T Consensus       241 ~---~~~~~~h~~f~~~~~~~~~~~~~~~~~~~~~  272 (316)
T cd05620         241 V---VGNIRGHPFFKTINWTALEKRELDPPFKPKV  272 (316)
T ss_pred             C---hHHHHcCCCcCCCCHHHHHhCCCCCCcCCCC
Confidence            5   4789999999999998763  3334444443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=3e-47  Score=409.11  Aligned_cols=263  Identities=38%  Similarity=0.673  Sum_probs=223.7

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHH-HHHhcCCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE-ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~-IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+||+||+|+++.+++.||||++.+...........+.+|.. +++.++||||++++++|+.++.+|+||||++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            46999999999999999999999999998765544444455666665 46779999999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|..++.+.  ..+++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+++....          
T Consensus        81 ~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~----------  148 (325)
T cd05604          81 GELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIA----------  148 (325)
T ss_pred             CCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCC----------
Confidence            9998877654  5799999999999999999999999999999999999999999999999999742100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        .......++||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~gt~~y  162 (325)
T cd05604         149 ------------------------------------------------------------------QSDTTTTFCGTPEY  162 (325)
T ss_pred             ------------------------------------------------------------------CCCCcccccCChhh
Confidence                                                                              00011235799999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      +|||++.+..++.++|||||||++|||++|+.||.+.+....+.++......++  +..+..+.++|++||.+||.+|++
T Consensus       163 ~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~ll~~~p~~R~~  240 (325)
T cd05604         163 LAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKPLVLR--PGASLTAWSILEELLEKDRQRRLG  240 (325)
T ss_pred             CCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHHHHHHHHHcCCccCC--CCCCHHHHHHHHHHhccCHHhcCC
Confidence            999999999999999999999999999999999998766555555555544433  357889999999999999999999


Q ss_pred             chhcHHHHHcCCCCCCCCcchhcc
Q 004790          656 VKRGATEIKQHPFFEGVNWALIRC  679 (730)
Q Consensus       656 ~~~~a~elL~HPfF~~v~w~~~r~  679 (730)
                      .+....+++.||||+.++|..+..
T Consensus       241 ~~~~~~~i~~h~~f~~~~~~~~~~  264 (325)
T cd05604         241 AKEDFLEIQEHPFFESLSWTDLEQ  264 (325)
T ss_pred             CCCCHHHHhcCCCcCCCCHHHHHh
Confidence            888889999999999999987743

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=9.8e-49  Score=413.85  Aligned_cols=254  Identities=31%  Similarity=0.521  Sum_probs=233.8

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      .+|++.+.||+|.||+|-+|.....|+.||||.|+|..+.+++.+-++++|++||..|+||||+++|++|+..+.+.|||
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivM  132 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVM  132 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||..+|+|++++.+.  +.|+|..++.+++||+.|+.|+|.++|||||||.+|||+|+++++||+||||+-.++      
T Consensus       133 EYaS~GeLYDYiSer--~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly~------  204 (668)
T KOG0611|consen  133 EYASGGELYDYISER--GSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLYA------  204 (668)
T ss_pred             EecCCccHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhhc------
Confidence            999999999999876  689999999999999999999999999999999999999999999999999983221      


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                             ....-.+||
T Consensus       205 -----------------------------------------------------------------------~~kfLqTFC  213 (668)
T KOG0611|consen  205 -----------------------------------------------------------------------DKKFLQTFC  213 (668)
T ss_pred             -----------------------------------------------------------------------cccHHHHhc
Confidence                                                                                   001234789


Q ss_pred             cCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          571 GTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      |+|.|.+||++.|.+| ++.+|.|||||+||.|++|.+||.|.+....+.+|-.+.++-|.   .+.++.-||+.||..|
T Consensus       214 GSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~GaYrEP~---~PSdA~gLIRwmLmVN  290 (668)
T KOG0611|consen  214 GSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISRGAYREPE---TPSDASGLIRWMLMVN  290 (668)
T ss_pred             CCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHHHHHHhhcccccCCC---CCchHHHHHHHHHhcC
Confidence            9999999999999998 89999999999999999999999999888888888888887764   4678899999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF~  670 (730)
                      |++|.|    ..+|-.|-|..
T Consensus       291 P~RRAT----ieDiAsHWWvN  307 (668)
T KOG0611|consen  291 PERRAT----IEDIASHWWVN  307 (668)
T ss_pred             cccchh----HHHHhhhheee
Confidence            999999    58999999863

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6e-48  Score=411.76  Aligned_cols=261  Identities=30%  Similarity=0.482  Sum_probs=217.2

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc--eeeE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR--FSCL  408 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~--~l~L  408 (730)
                      .+|...+.||+|+||+||++.+..++..+|||.+.....   ...+.+.+|+.||..|+|||||+.++......  .+++
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~---~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i   93 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDS---PTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNI   93 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccc---hhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEe
Confidence            457888999999999999999999999999999876521   12667899999999999999999999755444  6999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-CCceEEecccccccccCCC
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-DGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-~g~vKL~DFGlA~~~~~~~  487 (730)
                      +|||++||+|.+++.+..+ .|+|..++.|++||+.||+|||++|||||||||+|||++. +|.+||+|||+++......
T Consensus        94 ~mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~  172 (313)
T KOG0198|consen   94 FMEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKG  172 (313)
T ss_pred             eeeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCcccccccccc
Confidence            9999999999999998755 7999999999999999999999999999999999999999 7999999999985432100


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                      .                                                                         ......
T Consensus       173 ~-------------------------------------------------------------------------~~~~~~  179 (313)
T KOG0198|consen  173 T-------------------------------------------------------------------------KSDSEL  179 (313)
T ss_pred             c-------------------------------------------------------------------------cccccc
Confidence            0                                                                         011223


Q ss_pred             ccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCC-CCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          568 SFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKG-SGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g-~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ++.||+.|||||++.. ...+.++|||||||++.||+||+.||.. ......++.+.......+.+..++.++++||++|
T Consensus       180 ~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C  259 (313)
T KOG0198|consen  180 SVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIGREDSLPEIPDSLSDEAKDFLRKC  259 (313)
T ss_pred             cccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHhccCCCCCCCcccCHHHHHHHHHH
Confidence            5789999999999996 2334599999999999999999999987 3444445555544422233346899999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      |.+||.+|||    |+++|+|||.+..
T Consensus       260 ~~~~p~~Rpt----a~eLL~hpf~~~~  282 (313)
T KOG0198|consen  260 FKRDPEKRPT----AEELLEHPFLKQN  282 (313)
T ss_pred             hhcCcccCcC----HHHHhhChhhhcc
Confidence            9999999999    8999999999863

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.1e-47  Score=398.72  Aligned_cols=276  Identities=37%  Similarity=0.594  Sum_probs=227.2

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      .|++.+.||+|+||+||++.+..+++.||+|++.+...........+.+|+.+|+.++||||++++++|.++..+|+|||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            48999999999999999999999999999999987655444445567789999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |++||+|..++.......+++..++.++.||+.||.|||++||+||||||+|||++.+++++|+|||++.....      
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~------  154 (285)
T cd05605          81 LMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPE------  154 (285)
T ss_pred             ccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCC------
Confidence            99999998877654445799999999999999999999999999999999999999999999999999843100      


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                             .......+|
T Consensus       155 -----------------------------------------------------------------------~~~~~~~~~  163 (285)
T cd05605         155 -----------------------------------------------------------------------GETIRGRVG  163 (285)
T ss_pred             -----------------------------------------------------------------------CCccccccC
Confidence                                                                                   000112478


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeee----ecccccCCCCCCCChhHHHHHHhhhc
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV----VGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i----~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      |+.|+|||++.+..++.++|||||||++|||++|+.||.+.........+    ......+  ...++..+++||.+||.
T Consensus       164 ~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~l~  241 (285)
T cd05605         164 TVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEY--SEKFSEAARSICRQLLT  241 (285)
T ss_pred             CCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhhccccc--CcccCHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999999876543322111    1122222  23578899999999999


Q ss_pred             CCCCCcCCch-hcHHHHHcCCCCCCCCcchhccC--CCCCCC
Q 004790          648 KEPQHRLGVK-RGATEIKQHPFFEGVNWALIRCS--TPPEVP  686 (730)
Q Consensus       648 ~DP~~R~t~~-~~a~elL~HPfF~~v~w~~~r~~--~pp~~p  686 (730)
                      .||.+|+++. ..++++++||||...+|..+...  .||..|
T Consensus       242 ~~P~~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  283 (285)
T cd05605         242 KDPGFRLGCRGEGAEEVKAHPFFRTANFKRLEAGMLEPPFCP  283 (285)
T ss_pred             CCHHHhcCCCCCCHHHHhcCcCccCCCHHHHhhCCCCCCCCC
Confidence            9999999542 23899999999999999987543  344444

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=2e-49  Score=398.13  Aligned_cols=260  Identities=29%  Similarity=0.497  Sum_probs=231.4

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..+.|++-+.||+|.|+.||++.+..||+.||+|+++...+..+ ..+.+.+|+.|-+.|+||||++|++.+..+.+.|
T Consensus         8 ~f~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~-~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~y   86 (355)
T KOG0033|consen    8 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSAR-DFQKLEREARICRKLQHPNIVRLHDSIQEESFHY   86 (355)
T ss_pred             ccchhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccc-cHHHHHHHHHHHHhcCCCcEeehhhhhcccceeE
Confidence            344678999999999999999999999999999999987776654 6678999999999999999999999999999999


Q ss_pred             EEeeecCCCCccc-cccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---CCceEEecccccccc
Q 004790          408 LVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---DGHIMLSDFDLSLRC  483 (730)
Q Consensus       408 LVmEy~~GGsL~~-ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~g~vKL~DFGlA~~~  483 (730)
                      ||+|+|.|++|.. +.++   -.++|..+-.|++||+.||.|+|.+||||||+||+|+|+..   ..-+||+|||+|...
T Consensus        87 lvFe~m~G~dl~~eIV~R---~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l  163 (355)
T KOG0033|consen   87 LVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEV  163 (355)
T ss_pred             EEEecccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEe
Confidence            9999999999964 5555   47899999999999999999999999999999999999954   346999999999653


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      .                    +|.                                                        
T Consensus       164 ~--------------------~g~--------------------------------------------------------  167 (355)
T KOG0033|consen  164 N--------------------DGE--------------------------------------------------------  167 (355)
T ss_pred             C--------------------Ccc--------------------------------------------------------
Confidence            1                    000                                                        


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC--CCCCCChhHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP--DSPATSYASRDL  641 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p--~~~~~s~~~~dL  641 (730)
                       -...++|||.|||||+++..+|+..+|||+.|||||-||.|++||.+.+....+..|+.+.+.++  .++.+++++++|
T Consensus       168 -~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~L  246 (355)
T KOG0033|consen  168 -AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSL  246 (355)
T ss_pred             -ccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHH
Confidence             01136899999999999999999999999999999999999999999888888888998888775  578899999999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      |++||..||.+|+|    +.|+|+|||+.+-
T Consensus       247 vrrML~~dP~kRIt----a~EAL~HpWi~~r  273 (355)
T KOG0033|consen  247 IRRMLTVNPKKRIT----ADEALKHPWICNR  273 (355)
T ss_pred             HHHHhccChhhhcc----HHHHhCCchhcch
Confidence            99999999999999    8999999999873

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-47  Score=419.59  Aligned_cols=259  Identities=37%  Similarity=0.573  Sum_probs=234.2

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~L  408 (730)
                      ...|++.+.||.|.||.||+++++.||+.||+|++.|...........+.+|+.||+.+. |||||+|++.|++...+|+
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l  113 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL  113 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence            467999999999999999999999999999999999988766666678899999999998 9999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC----CCceEEeccccccccc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD----DGHIMLSDFDLSLRCA  484 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~----~g~vKL~DFGlA~~~~  484 (730)
                      |||+|.||+|++.+...   .++|..+..++.||+.|+.|||+.|||||||||||+|+..    ++.+|++|||+|....
T Consensus       114 vmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~  190 (382)
T KOG0032|consen  114 VMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIK  190 (382)
T ss_pred             EEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEcc
Confidence            99999999999977765   3999999999999999999999999999999999999964    3589999999995421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      .                                                                             ..
T Consensus       191 ~-----------------------------------------------------------------------------~~  193 (382)
T KOG0032|consen  191 P-----------------------------------------------------------------------------GE  193 (382)
T ss_pred             C-----------------------------------------------------------------------------Cc
Confidence            0                                                                             11


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC--CCCCCChhHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP--DSPATSYASRDLI  642 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p--~~~~~s~~~~dLI  642 (730)
                      +....|||+.|+|||++.+.+|+..+||||+||++|.|++|.+||.+........+|..+.+.|+  .+..++..++|||
T Consensus       194 ~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i  273 (382)
T KOG0032|consen  194 RLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFI  273 (382)
T ss_pred             eEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHH
Confidence            23457999999999999999999999999999999999999999999998888888888877664  5678899999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ++||..||.+|++    +.++|+|||+++.
T Consensus       274 ~~ll~~dp~~R~t----a~~~L~HpWi~~~  299 (382)
T KOG0032|consen  274 RKLLEFDPRKRLT----AAQALQHPWIKSI  299 (382)
T ss_pred             HHhcccCcccCCC----HHHHhcCccccCC
Confidence            9999999999999    7999999999864

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-47  Score=408.20  Aligned_cols=269  Identities=29%  Similarity=0.429  Sum_probs=232.3

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .+..++|++..+||.|..++||+|++..++.+||||+++.+....  .+..+++|+..+++++||||++++..|..+..+
T Consensus        22 p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~--~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~L   99 (516)
T KOG0582|consen   22 PLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNN--DLDALRKEVQTMSLIDHPNIVTYHCSFVVDSEL   99 (516)
T ss_pred             CCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhh--hHHHHHHHHHHhhhcCCCCcceEEEEEEeccee
Confidence            355689999999999999999999999999999999999876554  378899999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||.||.+|++.+++...-...|+|..+..++++++.||.|||++|.||||||+.||||+.+|.|||+|||.+..+.. 
T Consensus       100 WvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~-  178 (516)
T KOG0582|consen  100 WVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFD-  178 (516)
T ss_pred             EEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeeecc-
Confidence            9999999999999998877666799999999999999999999999999999999999999999999999998743211 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                        +|.                                                     ....+.
T Consensus       179 ------------------~G~-----------------------------------------------------R~~~rf  187 (516)
T KOG0582|consen  179 ------------------SGD-----------------------------------------------------RQVTRF  187 (516)
T ss_pred             ------------------cCc-----------------------------------------------------eeeEee
Confidence                              000                                                     011222


Q ss_pred             cccccCcccCChhhhcc--CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--------CCCCCh
Q 004790          567 MSFVGTHEYLAPEIIKG--EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--------SPATSY  636 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g--~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--------~~~~s~  636 (730)
                      .+++||+.|||||++..  .+|+.++||||||++..||.+|..||.......++..-+++....+.        ....+.
T Consensus       188 ~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~k  267 (516)
T KOG0582|consen  188 NTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSK  267 (516)
T ss_pred             ccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcccccCChHHhhhhcH
Confidence            57899999999999754  46899999999999999999999999988877777666655554332        234566


Q ss_pred             hHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          637 ASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       637 ~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      .++.+|..||++||.+||+    |+++|+|+||+...
T Consensus       268 sf~e~i~~CL~kDP~kRpt----AskLlkh~FFk~~k  300 (516)
T KOG0582|consen  268 SFREMIALCLVKDPSKRPT----ASKLLKHAFFKKAK  300 (516)
T ss_pred             HHHHHHHHHhhcCcccCCC----HHHHhccHHHhhcc
Confidence            7899999999999999999    89999999999753

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=1.4e-46  Score=403.41  Aligned_cols=268  Identities=38%  Similarity=0.738  Sum_probs=222.3

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHh-cCCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL-LDHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~-L~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+||+||+|++..+++.||||++++..............|..++.. ++||||++++++|.++..+|+||||++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            469999999999999999999999999987654433445566778888876 4999999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|..++...  ..+++.+++.|+.||+.||.|||++||+||||||+|||++.++.+||+|||++.....          
T Consensus        81 g~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~----------  148 (316)
T cd05619          81 GDLMFHIQSC--HKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENML----------  148 (316)
T ss_pred             CcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCC----------
Confidence            9999887654  5689999999999999999999999999999999999999999999999999842100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        ........+||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~gt~~y  162 (316)
T cd05619         149 ------------------------------------------------------------------GDAKTCTFCGTPDY  162 (316)
T ss_pred             ------------------------------------------------------------------CCCceeeecCCccc
Confidence                                                                              00011235799999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      +|||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|  ..++.++++||.+||.+||++|++
T Consensus       163 ~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~li~~~l~~~P~~R~~  240 (316)
T cd05619         163 IAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMDNPCYP--RWLTREAKDILVKLFVREPERRLG  240 (316)
T ss_pred             cCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCC--ccCCHHHHHHHHHHhccCHhhcCC
Confidence            999999999999999999999999999999999988765554444433333344  347889999999999999999999


Q ss_pred             chhcHHHHHcCCCCCCCCcchhc--cCCCCCCCC
Q 004790          656 VKRGATEIKQHPFFEGVNWALIR--CSTPPEVPR  687 (730)
Q Consensus       656 ~~~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~  687 (730)
                      +   .+++++||||+.++|..+.  ...+|..|.
T Consensus       241 ~---~~~l~~h~~~~~~~~~~~~~~~~~~~~~~~  271 (316)
T cd05619         241 V---KGDIRQHPFFREIDWSALEEREIEPPFKPK  271 (316)
T ss_pred             C---hHHHHcCcccCCCCHHHHHhCCCCCCcCCC
Confidence            5   3589999999999998764  334444443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.4e-47  Score=406.57  Aligned_cols=261  Identities=41%  Similarity=0.718  Sum_probs=222.2

Q ss_pred             EccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc---CCCCCccccccccccceeeEEeeecCC
Q 004790          339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL---DHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       339 LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L---~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      ||+|+||+||+|+++.+++.||||++.+..............|..++..+   +||||++++++|+++..+|+||||++|
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            79999999999999999999999999876655555555667788887765   799999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|..++.+.  ..+++..++.++.||+.||+|||++||+||||||+|||++.++++||+|||++.....          
T Consensus        81 g~L~~~l~~~--~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~----------  148 (330)
T cd05586          81 GELFWHLQKE--GRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLT----------  148 (330)
T ss_pred             ChHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCC----------
Confidence            9998877654  5799999999999999999999999999999999999999999999999999842100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        ........+||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~gt~~y  162 (330)
T cd05586         149 ------------------------------------------------------------------DNKTTNTFCGTTEY  162 (330)
T ss_pred             ------------------------------------------------------------------CCCCccCccCCccc
Confidence                                                                              00011235799999


Q ss_pred             CChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcC
Q 004790          576 LAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRL  654 (730)
Q Consensus       576 ~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~  654 (730)
                      +|||++.+. .++.++|||||||++|||++|+.||.+.+....+.++..+...++.. .++.++++||++||.+||++|+
T Consensus       163 ~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~li~~~L~~~P~~R~  241 (330)
T cd05586         163 LAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKVRFPKN-VLSDEGRQFVKGLLNRNPQHRL  241 (330)
T ss_pred             cCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHHHHHHHHHcCCCCCCCc-cCCHHHHHHHHHHcCCCHHHCC
Confidence            999999865 48999999999999999999999998876655555555555566543 4688999999999999999999


Q ss_pred             CchhcHHHHHcCCCCCCCCcchhc
Q 004790          655 GVKRGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       655 t~~~~a~elL~HPfF~~v~w~~~r  678 (730)
                      +....+.++++||||..++|..+.
T Consensus       242 ~~~~~~~~ll~h~~~~~~~~~~~~  265 (330)
T cd05586         242 GAHRDAVELKEHPFFADIDWDLLS  265 (330)
T ss_pred             CCCCCHHHHhcCccccCCCHHHHH
Confidence            877779999999999999998774

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-47  Score=421.88  Aligned_cols=256  Identities=26%  Similarity=0.468  Sum_probs=227.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      ...|....+||+|+.|.||.|+...+++.||||.|++.....+   +-+.+|+.+|+.++|+|||.+++.|--++.+|+|
T Consensus       272 ~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~k---eLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVV  348 (550)
T KOG0578|consen  272 RSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKK---ELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVV  348 (550)
T ss_pred             hhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCch---hhhHHHHHHHHhccchHHHHHHHHhcccceeEEE
Confidence            4678899999999999999999999999999999987754433   4478999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||||+||+|.+++...   .++|.++..++++++.||+|||.+||+|||||.+|||+..+|.+||+|||++.++..    
T Consensus       349 MEym~ggsLTDvVt~~---~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~----  421 (550)
T KOG0578|consen  349 MEYMEGGSLTDVVTKT---RMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISE----  421 (550)
T ss_pred             EeecCCCchhhhhhcc---cccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeecccc----
Confidence            9999999999988765   699999999999999999999999999999999999999999999999999743210    


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              ......+.
T Consensus       422 ------------------------------------------------------------------------~~~KR~Tm  429 (550)
T KOG0578|consen  422 ------------------------------------------------------------------------EQSKRSTM  429 (550)
T ss_pred             ------------------------------------------------------------------------ccCccccc
Confidence                                                                                    00022357


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeee-cccccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV-GQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~-~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      +|||.|||||++....||.++||||||++++||+-|++||...+....++.|. ++...+.....+|.+++|||.+||+.
T Consensus       430 VGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~  509 (550)
T KOG0578|consen  430 VGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVV  509 (550)
T ss_pred             cCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999766655555543 56667777788999999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |+++|++    |.|||+||||+.
T Consensus       510 dv~~Ras----A~eLL~HpFl~~  528 (550)
T KOG0578|consen  510 DVEQRAS----AKELLEHPFLKM  528 (550)
T ss_pred             chhcCCC----HHHHhcChhhhh
Confidence            9999999    899999999964

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=1.9e-46  Score=403.30  Aligned_cols=268  Identities=44%  Similarity=0.796  Sum_probs=219.7

Q ss_pred             CeEEEeEEccCCcEEEEEEEEC---CCCeEEEEEEeehhhhhh-HHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELS---STRCYFAMKVMDKASLAS-RKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~---~t~~~vAvKvi~k~~~~~-~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      +|++++.||+|+||+||+++..   .+++.||+|++.+..... ....+.+.+|+.+|+.+ +||||++++++|+.+..+
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            5899999999999999999874   478899999998754332 33456788899999999 599999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||++||+|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++.....
T Consensus        81 ~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~  158 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQR--DNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSE  158 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCcccccc
Confidence            9999999999999887654  56899999999999999999999999999999999999999999999999998432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       159 ---------------------------------------------------------------------------~~~~~  163 (332)
T cd05614         159 ---------------------------------------------------------------------------EKERT  163 (332)
T ss_pred             ---------------------------------------------------------------------------CCCcc
Confidence                                                                                       00011


Q ss_pred             cccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCcccee----eeecccccCCCCCCCChhHHHH
Q 004790          567 MSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF----NVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~----~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      ..++||+.|+|||++.+.. ++.++|||||||++|||++|+.||..........    .+.....  +....++..+++|
T Consensus       164 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l  241 (332)
T cd05614         164 YSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDP--PFPSFIGPEAQDL  241 (332)
T ss_pred             ccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcCCC--CCCCCCCHHHHHH
Confidence            2458999999999998764 7899999999999999999999997644322221    1222222  2234678999999


Q ss_pred             HHhhhcCCCCCcCCch-hcHHHHHcCCCCCCCCcchhc
Q 004790          642 IRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~-~~a~elL~HPfF~~v~w~~~r  678 (730)
                      |.+||..||++|++.. ..++++++||||++++|..+.
T Consensus       242 i~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~~~~~~  279 (332)
T cd05614         242 LHKLLRKDPKKRLGAGPQGASEIKEHPFFKGLDWEALA  279 (332)
T ss_pred             HHHHcCCCHHHcCCCCCCCHHHHHcCCCcCCCCHHHHH
Confidence            9999999999999642 248999999999999998764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.3e-46  Score=395.32  Aligned_cols=262  Identities=32%  Similarity=0.600  Sum_probs=219.1

Q ss_pred             EccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCc
Q 004790          339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL  418 (730)
Q Consensus       339 LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL  418 (730)
                      ||+|+||+||+++++.+++.||+|++.+...........+..|+++|+.++||||++++++|..+..+|+||||++||+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            79999999999999999999999999877665555566788999999999999999999999999999999999999999


Q ss_pred             cccccc--cCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCC
Q 004790          419 HTLRQR--QPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLD  496 (730)
Q Consensus       419 ~~ll~~--~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~  496 (730)
                      ..++..  .....+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++..+...          
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~----------  150 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDG----------  150 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCC----------
Confidence            876533  22356899999999999999999999999999999999999999999999999998432100          


Q ss_pred             CCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccC
Q 004790          497 SDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYL  576 (730)
Q Consensus       497 ~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~  576 (730)
                                                                                        ......+.||+.|+
T Consensus       151 ------------------------------------------------------------------~~~~~~~~g~~~y~  164 (280)
T cd05608         151 ------------------------------------------------------------------QSKTKGYAGTPGFM  164 (280)
T ss_pred             ------------------------------------------------------------------CccccccCCCcCcc
Confidence                                                                              00011347899999


Q ss_pred             ChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccc----eeeeecccccCCCCCCCChhHHHHHHhhhcCCCCC
Q 004790          577 APEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQH  652 (730)
Q Consensus       577 APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~----l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~  652 (730)
                      |||++.+..++.++|+|||||++|||++|+.||........    ...+......++  ..++.++++||.+||..||++
T Consensus       165 aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~P~~  242 (280)
T cd05608         165 APELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILNDSVTYP--DKFSPASKSFCEALLAKDPEK  242 (280)
T ss_pred             CHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhcccCCCCc--ccCCHHHHHHHHHHhcCCHHH
Confidence            99999999999999999999999999999999986543221    122222222222  357889999999999999999


Q ss_pred             cCCchh-cHHHHHcCCCCCCCCcchhc
Q 004790          653 RLGVKR-GATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       653 R~t~~~-~a~elL~HPfF~~v~w~~~r  678 (730)
                      |+++++ .++++++||||++++|..+.
T Consensus       243 R~~~~~~~~~~~l~h~~~~~~~~~~~~  269 (280)
T cd05608         243 RLGFRDGNCDGLRTHPLFRDLNWRQLE  269 (280)
T ss_pred             hcCCCCCCHHHHhcChhhhcCCHhHHh
Confidence            997654 58999999999999999763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.6e-46  Score=401.84  Aligned_cols=262  Identities=40%  Similarity=0.731  Sum_probs=221.4

Q ss_pred             EeEEccCCcEEEEEEEEC---CCCeEEEEEEeehhhhh-hHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          336 LKRLGCGDIGSVYLSELS---STRCYFAMKVMDKASLA-SRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~---~t~~~vAvKvi~k~~~~-~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      ++.||+|+||.||+++..   .+++.||+|++.+.... .......+.+|+++|+.++||||++++++|.+++.+|+|||
T Consensus         1 ~~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e   80 (323)
T cd05584           1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILE   80 (323)
T ss_pred             CceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEe
Confidence            368999999999999874   46889999999876543 22344567889999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |++|++|..++.+.  +.+.+..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....      
T Consensus        81 ~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~------  152 (323)
T cd05584          81 YLSGGELFMHLERE--GIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIH------  152 (323)
T ss_pred             CCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeeccc------
Confidence            99999999887664  5688999999999999999999999999999999999999999999999999842100      


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                            ........+|
T Consensus       153 ----------------------------------------------------------------------~~~~~~~~~g  162 (323)
T cd05584         153 ----------------------------------------------------------------------EGTVTHTFCG  162 (323)
T ss_pred             ----------------------------------------------------------------------CCCcccccCC
Confidence                                                                                  0001123579


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQ  651 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~  651 (730)
                      |+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|  ..++.++++||++||.+||+
T Consensus       163 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~p~  240 (323)
T cd05584         163 TIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKLNLP--PYLTPEARDLLKKLLKRNPS  240 (323)
T ss_pred             CccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHcccCHh
Confidence            9999999999999999999999999999999999999998776666666655555444  45788999999999999999


Q ss_pred             CcCCch-hcHHHHHcCCCCCCCCcchh
Q 004790          652 HRLGVK-RGATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       652 ~R~t~~-~~a~elL~HPfF~~v~w~~~  677 (730)
                      +|++.. ..++++++||||...+|..+
T Consensus       241 ~R~~~~~~~~~~l~~h~~~~~~~~~~~  267 (323)
T cd05584         241 SRLGAGPGDAAEVQSHPFFRHVNWDDL  267 (323)
T ss_pred             HcCCCCCCCHHHHhcCCCcCCCCHHHH
Confidence            999421 23899999999999999866

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=2.5e-46  Score=401.19  Aligned_cols=261  Identities=39%  Similarity=0.740  Sum_probs=223.6

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+||+||+|+++.+++.||||++++...........+.+|+++++.+ +||||++++++|++...+|+||||++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            4699999999999999999999999999887665556667788899999888 799999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|..++.+.  ..+++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....          
T Consensus        81 ~~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~----------  148 (318)
T cd05570          81 GDLMFHIQRS--GRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGIL----------  148 (318)
T ss_pred             CCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCc----------
Confidence            9998877654  5799999999999999999999999999999999999999999999999998742100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                        ........+||+.|
T Consensus       149 ------------------------------------------------------------------~~~~~~~~~g~~~y  162 (318)
T cd05570         149 ------------------------------------------------------------------GGVTTSTFCGTPDY  162 (318)
T ss_pred             ------------------------------------------------------------------CCCcccceecCccc
Confidence                                                                              00011235799999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      +|||++.+..++.++|+|||||++|+|++|+.||.+.+....+..+......+|  ..++.++++||++||.+||.+|++
T Consensus       163 ~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~li~~~l~~dP~~R~s  240 (318)
T cd05570         163 IAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILEDEVRYP--RWLSKEAKSILKSFLTKNPEKRLG  240 (318)
T ss_pred             cCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCC--CcCCHHHHHHHHHHccCCHHHcCC
Confidence            999999999999999999999999999999999987765555555555555554  357899999999999999999999


Q ss_pred             c-hhcHHHHHcCCCCCCCCcchh
Q 004790          656 V-KRGATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       656 ~-~~~a~elL~HPfF~~v~w~~~  677 (730)
                      + ...+.++++||||+.++|...
T Consensus       241 ~~~~~~~~ll~~~~~~~~~~~~~  263 (318)
T cd05570         241 CLPTGEQDIKGHPFFREIDWDKL  263 (318)
T ss_pred             CCCCCHHHHhcCCCcCCCCHHHH
Confidence            4 223489999999999999865

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.3e-47  Score=399.14  Aligned_cols=261  Identities=26%  Similarity=0.350  Sum_probs=218.7

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc--cccee
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE--TDRFS  406 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~--~~~~l  406 (730)
                      ..+.|+.+.+|++|+||.||+|+++.|+..||+|.++... .....--...||+.||..++|||||.+.++..  +-+.+
T Consensus        74 sv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmek-ek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~i  152 (419)
T KOG0663|consen   74 SVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEK-EKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKI  152 (419)
T ss_pred             cHHHHHHHhhcccCcceeEEEeccCCcceeEEeeeccccc-ccCCCcchhHHHHHHHHhcCCCCeeeeEEEEecccccee
Confidence            4578999999999999999999999999999999987543 11122234578999999999999999998775  34569


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      ||||||| .-||..++...+ ..|.+.+++.++.|++.||+|||.+.|+||||||+|+|+++.|.+||+|||||+.+...
T Consensus       153 y~VMe~~-EhDLksl~d~m~-q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp  230 (419)
T KOG0663|consen  153 YIVMEYV-EHDLKSLMETMK-QPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSP  230 (419)
T ss_pred             eeeHHHH-HhhHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhhhcCC
Confidence            9999999 679999988764 58999999999999999999999999999999999999999999999999999754210


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                  ....
T Consensus       231 ----------------------------------------------------------------------------~k~~  234 (419)
T KOG0663|consen  231 ----------------------------------------------------------------------------LKPY  234 (419)
T ss_pred             ----------------------------------------------------------------------------cccC
Confidence                                                                                        0112


Q ss_pred             cccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-------------------ccc
Q 004790          567 MSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-------------------QQL  626 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-------------------~~~  626 (730)
                      +..|-|.||+|||+|.|.. |+.++||||+|||+.||+++++.|.|..+.+++.+|+.                   +..
T Consensus       235 T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~  314 (419)
T KOG0663|consen  235 TPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKM  314 (419)
T ss_pred             cceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhcc
Confidence            3458899999999999876 89999999999999999999999999988877766542                   011


Q ss_pred             cCCCC-----------CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          627 RFPDS-----------PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       627 ~~p~~-----------~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      .|+..           ..++....||+.++|.+||.+|+|    |.|.|+|.||.+.
T Consensus       315 ~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~t----A~~~L~h~~F~e~  367 (419)
T KOG0663|consen  315 TFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRIT----AEDGLKHEYFRET  367 (419)
T ss_pred             ccCCCCchhhhhhccccccchhHHHHHHHHhccCcccccc----HHHhhcccccccC
Confidence            22211           125678889999999999999999    8999999999963

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=3.1e-46  Score=391.80  Aligned_cols=264  Identities=31%  Similarity=0.527  Sum_probs=219.1

Q ss_pred             EccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCc
Q 004790          339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL  418 (730)
Q Consensus       339 LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL  418 (730)
                      ||+|+||.||+++++.+++.||+|++.+...........+..|+++|+.++||||++++++|+++..+|+||||++|++|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            79999999999999999999999999876554433444566799999999999999999999999999999999999999


Q ss_pred             cccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCC
Q 004790          419 HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSD  498 (730)
Q Consensus       419 ~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~  498 (730)
                      ..++.......+++..+..++.||+.||+|||++||+||||||+|||++.++.++|+|||++......            
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~------------  148 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDG------------  148 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCC------------
Confidence            88776554456889999999999999999999999999999999999999999999999998432100            


Q ss_pred             CCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCCh
Q 004790          499 PSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAP  578 (730)
Q Consensus       499 ~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~AP  578 (730)
                                                                                       .......||+.|+||
T Consensus       149 -----------------------------------------------------------------~~~~~~~~~~~y~aP  163 (277)
T cd05607         149 -----------------------------------------------------------------KTITQRAGTNGYMAP  163 (277)
T ss_pred             -----------------------------------------------------------------ceeeccCCCCCccCH
Confidence                                                                             000123689999999


Q ss_pred             hhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc----cceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcC
Q 004790          579 EIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR----ATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRL  654 (730)
Q Consensus       579 Evl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~----~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~  654 (730)
                      |++.+..++.++|+|||||++|||++|+.||.+....    .....+......++. ..++.++++||++||.+||++|+
T Consensus       164 E~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~L~~~P~~R~  242 (277)
T cd05607         164 EILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKFEH-QNFTEESKDICRLFLAKKPEDRL  242 (277)
T ss_pred             HHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhcccccccc-ccCCHHHHHHHHHHhccCHhhCC
Confidence            9999999999999999999999999999999764332    111222222322222 35788999999999999999999


Q ss_pred             CchhcHHHHHcCCCCCCCCcchhccC
Q 004790          655 GVKRGATEIKQHPFFEGVNWALIRCS  680 (730)
Q Consensus       655 t~~~~a~elL~HPfF~~v~w~~~r~~  680 (730)
                      ++++..++++.||||+.++|..+...
T Consensus       243 ~~~~~~~~~~~h~~f~~~~~~~~~~~  268 (277)
T cd05607         243 GSREKNDDPRKHEFFKTINFPRLEAG  268 (277)
T ss_pred             CCccchhhhhcChhhcCCCHHHHhcC
Confidence            98777789999999999999887643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=3.5e-46  Score=399.30  Aligned_cols=262  Identities=40%  Similarity=0.762  Sum_probs=222.1

Q ss_pred             EeEEccCCcEEEEEEEE---CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeee
Q 004790          336 LKRLGCGDIGSVYLSEL---SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEY  412 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~---~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy  412 (730)
                      ++.||+|+||.||++++   ..+++.||+|++.+..... .....+.+|+++|+.++||||++++++|+++..+|+||||
T Consensus         1 l~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   79 (318)
T cd05582           1 LKVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKV-RDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDF   79 (318)
T ss_pred             CceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhh-hhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcC
Confidence            36799999999999986   4578899999998765432 3344577899999999999999999999999999999999


Q ss_pred             cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccccc
Q 004790          413 CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT  492 (730)
Q Consensus       413 ~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~  492 (730)
                      ++||+|..++.+.  ..+++..++.|+.||+.||.|||++||+||||||+|||++.++.+||+|||++.....       
T Consensus        80 ~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~-------  150 (318)
T cd05582          80 LRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESID-------  150 (318)
T ss_pred             CCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCC-------
Confidence            9999999887654  5689999999999999999999999999999999999999999999999999843100       


Q ss_pred             CCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccC
Q 004790          493 SSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT  572 (730)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT  572 (730)
                                                                                           .......++||
T Consensus       151 ---------------------------------------------------------------------~~~~~~~~~g~  161 (318)
T cd05582         151 ---------------------------------------------------------------------HEKKAYSFCGT  161 (318)
T ss_pred             ---------------------------------------------------------------------CCCceecccCC
Confidence                                                                                 00011235799


Q ss_pred             cccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCC
Q 004790          573 HEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQH  652 (730)
Q Consensus       573 ~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~  652 (730)
                      +.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+..+......+|  ..++.++++||++||..||++
T Consensus       162 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~i~~~~~~~p--~~~~~~~~~li~~~l~~~P~~  239 (318)
T cd05582         162 VEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKAKLGMP--QFLSPEAQSLLRALFKRNPAN  239 (318)
T ss_pred             hhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHhhcCHhH
Confidence            999999999999999999999999999999999999988766555555555555544  357899999999999999999


Q ss_pred             cCCchh-cHHHHHcCCCCCCCCcchhc
Q 004790          653 RLGVKR-GATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       653 R~t~~~-~a~elL~HPfF~~v~w~~~r  678 (730)
                      |++..+ .+++++.||||..++|..+.
T Consensus       240 R~~a~~~~~~~~~~~~~~~~~~~~~~~  266 (318)
T cd05582         240 RLGAGPDGVEEIKRHPFFSTIDWNKLY  266 (318)
T ss_pred             cCCCCCCCHHHHhCCCCcCCCCHHHHH
Confidence            999643 47899999999999998764

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.7e-48  Score=394.67  Aligned_cols=261  Identities=31%  Similarity=0.472  Sum_probs=230.4

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhh-----hhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS-----LASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETD  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~-----~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~  403 (730)
                      ...|.--+.||.|..++|-++.++.+++.+|+|+|....     ....+..+...+|+.||+++ .||+|++|.++|+++
T Consensus        16 y~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~   95 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESD   95 (411)
T ss_pred             HhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCc
Confidence            466888899999999999999999999999999996422     22345566778899999987 899999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      .++++|+|.|+.|.|++++...  -.++|..++.+++|++.|++|||.++||||||||+|||++++.+|||+|||+|+++
T Consensus        96 sF~FlVFdl~prGELFDyLts~--VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~~l  173 (411)
T KOG0599|consen   96 AFVFLVFDLMPRGELFDYLTSK--VTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFACQL  173 (411)
T ss_pred             chhhhhhhhcccchHHHHhhhh--eeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccceeecc
Confidence            9999999999999999998865  67999999999999999999999999999999999999999999999999999653


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                             .
T Consensus       174 ~~-----------------------------------------------------------------------------G  176 (411)
T KOG0599|consen  174 EP-----------------------------------------------------------------------------G  176 (411)
T ss_pred             CC-----------------------------------------------------------------------------c
Confidence            21                                                                             0


Q ss_pred             ccccccccCcccCChhhhcc------CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccC--CCCCCCC
Q 004790          564 ARSMSFVGTHEYLAPEIIKG------EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF--PDSPATS  635 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g------~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~--p~~~~~s  635 (730)
                      .+-...||||+|+|||.|+.      .+|+..+|+|++|||+|.||.|.+||.......++..|+.+++.|  |.|.+++
T Consensus       177 ekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF~speWadis  256 (411)
T KOG0599|consen  177 EKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQFRSPEWADIS  256 (411)
T ss_pred             hhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcccccCCcchhhcc
Confidence            12234699999999999974      368899999999999999999999999888888888888887766  5678899


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      ...+|||.+||+.||.+|+|    ++|+|+||||..+-
T Consensus       257 ~~~KdLIsrlLqVdp~~Rit----ake~LaHpff~q~~  290 (411)
T KOG0599|consen  257 ATVKDLISRLLQVDPTKRIT----AKEALAHPFFIQIA  290 (411)
T ss_pred             ccHHHHHHHHHeeCchhccc----HHHHhcChHHHHHH
Confidence            99999999999999999999    79999999997543

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=7.3e-46  Score=390.88  Aligned_cols=279  Identities=35%  Similarity=0.585  Sum_probs=228.8

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      .|++.+.||+|+||.||++.+..+++.||+|.+.+...........+.+|+.+|+.++|+||+.+++.+.++..+|+|||
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEE
Confidence            37889999999999999999999999999999987655444445567789999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |++|++|..++.......+++..+..++.||+.||.|||++||+||||||+|||++.++.++|+|||++.....      
T Consensus        81 ~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~------  154 (285)
T cd05630          81 LMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE------  154 (285)
T ss_pred             ecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCC------
Confidence            99999999887655445699999999999999999999999999999999999999999999999998742100      


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                             .......+|
T Consensus       155 -----------------------------------------------------------------------~~~~~~~~g  163 (285)
T cd05630         155 -----------------------------------------------------------------------GQTIKGRVG  163 (285)
T ss_pred             -----------------------------------------------------------------------CccccCCCC
Confidence                                                                                   000012368


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc---ceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA---TLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~---~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      |+.|+|||++.+..++.++|+|||||++|+|++|+.||.+.....   ....+.. .........++.++++||++||+.
T Consensus       164 ~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~  242 (285)
T cd05630         164 TVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVK-EVQEEYSEKFSPDARSLCKMLLCK  242 (285)
T ss_pred             CccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhh-hhhhhcCccCCHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999998754321   1111111 111112245788999999999999


Q ss_pred             CCCCcCCch-hcHHHHHcCCCCCCCCcchhc--cCCCCCCCCC
Q 004790          649 EPQHRLGVK-RGATEIKQHPFFEGVNWALIR--CSTPPEVPRP  688 (730)
Q Consensus       649 DP~~R~t~~-~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p  688 (730)
                      ||.+|++++ ..++++++||||+.++|..+.  ...||..|.|
T Consensus       243 ~p~~R~s~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~  285 (285)
T cd05630         243 DPKERLGCQGGGAREVKEHPLFKQINFKRLEAGMLEPPFKPDP  285 (285)
T ss_pred             CHHHccCCCCCchHHHHcChhhhccCHHHHhcCCCCCCCCCCC
Confidence            999999953 247899999999999999774  3556666654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=4.3e-46  Score=390.45  Aligned_cols=257  Identities=27%  Similarity=0.405  Sum_probs=210.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||+||+|+++.+++.||+|++...... ......+.+|+++++.++||||++++++|..+..+|+||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEEN-EEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVF   79 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEeccccc-ccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEE
Confidence            4699999999999999999999999999999999765322 234456788999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++++.|..+...  ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......    
T Consensus        80 e~~~~~~l~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~----  153 (287)
T cd07848          80 EYVEKNMLELLEEM--PNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEG----  153 (287)
T ss_pred             ecCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCccccccc----
Confidence            99998877655433  246899999999999999999999999999999999999999999999999998432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                             ........+
T Consensus       154 -----------------------------------------------------------------------~~~~~~~~~  162 (287)
T cd07848         154 -----------------------------------------------------------------------SNANYTEYV  162 (287)
T ss_pred             -----------------------------------------------------------------------ccccccccc
Confidence                                                                                   000011347


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-------------------ccccCCC-
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-------------------QQLRFPD-  630 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-------------------~~~~~p~-  630 (730)
                      ||+.|+|||++.+..++.++|||||||++|||++|++||.+.+..+.+..+..                   ....++. 
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (287)
T cd07848         163 ATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAV  242 (287)
T ss_pred             cccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcc
Confidence            89999999999999999999999999999999999999987654333222111                   0011111 


Q ss_pred             ----------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          631 ----------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       631 ----------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                                ...++.+++|||++||.+||++|++    ++++++||||
T Consensus       243 ~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s----~~~~l~hp~f  287 (287)
T cd07848         243 NHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYL----TEQCLNHPAF  287 (287)
T ss_pred             cCcccHHHhhhcccCHHHHHHHHHHccCCcccCCC----HHHHhcCCCC
Confidence                      1235778999999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-46  Score=396.92  Aligned_cols=261  Identities=26%  Similarity=0.401  Sum_probs=218.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc-----cc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET-----DR  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~-----~~  404 (730)
                      ...|..++.||+|+||.|+.|.++.+|+.||||.+... +...-..++..||+.+|+.++|+||+.+++.+..     -+
T Consensus        21 ~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~-F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~   99 (359)
T KOG0660|consen   21 PRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNP-FENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFN   99 (359)
T ss_pred             cceecccccccCcceeeEEEEEEcCCCCEeehhhhhhh-hhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccc
Confidence            35566689999999999999999999999999998643 4555677889999999999999999999999875     35


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|+|+|+| +-||+.+++.+  ..+++..++++++||+.||.|+|+.+|+||||||.|+|++.+..+||+|||||+...
T Consensus       100 DvYiV~elM-etDL~~iik~~--~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~  176 (359)
T KOG0660|consen  100 DVYLVFELM-ETDLHQIIKSQ--QDLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLD  176 (359)
T ss_pred             eeEEehhHH-hhHHHHHHHcC--ccccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceeecc
Confidence            689999999 89999998876  459999999999999999999999999999999999999999999999999996421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                          ....
T Consensus       177 ~~--------------------------------------------------------------------------~~~~  182 (359)
T KOG0660|consen  177 KF--------------------------------------------------------------------------FEDG  182 (359)
T ss_pred             cc--------------------------------------------------------------------------Cccc
Confidence            10                                                                          0111


Q ss_pred             cccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec--------------------
Q 004790          565 RSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--------------------  623 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~--------------------  623 (730)
                      ..+.++-|.||+|||++.. ..|+.++||||+|||+.||++|++.|.|.+...++..|+.                    
T Consensus       183 ~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~  262 (359)
T KOG0660|consen  183 FMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARP  262 (359)
T ss_pred             chhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHH
Confidence            2345789999999999864 5699999999999999999999999999876555543321                    


Q ss_pred             ---ccccCCC------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          624 ---QQLRFPD------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       624 ---~~~~~p~------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                         .-...|.      .+..+..+.||+.+||+.||.+|+|    ++|+|+||||...
T Consensus       263 yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRit----a~eAL~hPYl~~~  316 (359)
T KOG0660|consen  263 YIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRIT----AEEALAHPYLAPY  316 (359)
T ss_pred             HHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCC----HHHHhcChhhhhh
Confidence               0011111      1466889999999999999999999    7999999999964

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=2.2e-45  Score=386.94  Aligned_cols=280  Identities=35%  Similarity=0.566  Sum_probs=231.1

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      .|+..+.||+|+||+||++++..+++.||+|++.+...........+.+|+++|+.++|+||+.+++.|.+++.+|+|||
T Consensus         1 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05632           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEE
Confidence            37889999999999999999999999999999987655544445567889999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+++++|..++.......+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++......     
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~-----  155 (285)
T cd05632          81 IMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEG-----  155 (285)
T ss_pred             eccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCCC-----
Confidence            999999988776544457999999999999999999999999999999999999999999999999988431000     


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                              .......|
T Consensus       156 ------------------------------------------------------------------------~~~~~~~g  163 (285)
T cd05632         156 ------------------------------------------------------------------------ESIRGRVG  163 (285)
T ss_pred             ------------------------------------------------------------------------CcccCCCC
Confidence                                                                                    00012468


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc--ccCCCCCCCChhHHHHHHhhhcCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ--LRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~--~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      |+.|+|||++.+..++.++|+|||||++|||++|..||.+.........+....  .........+.++.+||.+||..|
T Consensus       164 ~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  243 (285)
T cd05632         164 TVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKD  243 (285)
T ss_pred             CcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhccccccCccCCHHHHHHHHHHccCC
Confidence            999999999999999999999999999999999999998765432222221111  111222457888999999999999


Q ss_pred             CCCcCCch-hcHHHHHcCCCCCCCCcchh--ccCCCCCCCCC
Q 004790          650 PQHRLGVK-RGATEIKQHPFFEGVNWALI--RCSTPPEVPRP  688 (730)
Q Consensus       650 P~~R~t~~-~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p  688 (730)
                      |++|++++ .++.++++|+||+.++|..+  +..+||.+|.|
T Consensus       244 P~~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (285)
T cd05632         244 PKQRLGCQEEGAGEVKRHPFFRNMNFKRLEAGMLDPPFVPDP  285 (285)
T ss_pred             HhHcCCCcccChHHHHcChhhhcCCHHHHhcCcCCCCCCCCC
Confidence            99999975 44899999999999999875  45667777654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=9.1e-46  Score=392.73  Aligned_cols=262  Identities=25%  Similarity=0.374  Sum_probs=208.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|+++.+++.||||++.+....  .....+.+|+.+++.++||||+++++++.++..+|+|
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv   81 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEE--GTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLV   81 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEecccccc--ccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEE
Confidence            36899999999999999999999999999999999754321  2223567899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+ +++|..++... ...+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||++......   
T Consensus        82 ~e~~-~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~---  156 (303)
T cd07869          82 FEYV-HTDLCQYMDKH-PGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVP---  156 (303)
T ss_pred             EECC-CcCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccCC---
Confidence            9999 46777666543 246889999999999999999999999999999999999999999999999998421000   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       157 -------------------------------------------------------------------------~~~~~~~  163 (303)
T cd07869         157 -------------------------------------------------------------------------SHTYSNE  163 (303)
T ss_pred             -------------------------------------------------------------------------CccCCCC
Confidence                                                                                     0001124


Q ss_pred             ccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCcc-ceeeee---cc------------------cc
Q 004790          570 VGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA-TLFNVV---GQ------------------QL  626 (730)
Q Consensus       570 vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~-~l~~i~---~~------------------~~  626 (730)
                      +||+.|+|||++.+. .++.++|||||||++|||++|+.||.+..+.. .+..+.   ..                  .+
T Consensus       164 ~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (303)
T cd07869         164 VVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERF  243 (303)
T ss_pred             cccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccccccc
Confidence            689999999999765 47899999999999999999999998754321 111110   00                  00


Q ss_pred             c--CC-------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          627 R--FP-------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       627 ~--~p-------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      .  .+       .....+.+++|||++||++||.+|+|    +.++++||||+.+.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s----~~~~l~h~~f~~~~~~  297 (303)
T cd07869         244 TLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLS----AQAALSHEYFSDLPPR  297 (303)
T ss_pred             cccCCccHHHHhhccCCChHHHHHHHHHhccCchhccC----HHHHhcCcccccCChh
Confidence            0  00       00123567899999999999999999    7999999999987753

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=7.3e-46  Score=391.07  Aligned_cols=257  Identities=27%  Similarity=0.417  Sum_probs=208.7

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      .+++|+++++||.|+||.||+|+++.++..||+|+++.....  .....+.+|+.+|+.++||||+++++++.+++.+|+
T Consensus         3 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   80 (288)
T cd07871           3 KLETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEE--GAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTL   80 (288)
T ss_pred             ccccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccC--CcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEE
Confidence            357899999999999999999999999999999998754321  223456789999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||++ ++|..++... +..+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....  
T Consensus        81 v~e~~~-~~l~~~l~~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~--  156 (288)
T cd07871          81 VFEYLD-SDLKQYLDNC-GNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVP--  156 (288)
T ss_pred             EEeCCC-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeeccCC--
Confidence            999996 5888876643 345789999999999999999999999999999999999999999999999998431000  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                ......
T Consensus       157 --------------------------------------------------------------------------~~~~~~  162 (288)
T cd07871         157 --------------------------------------------------------------------------TKTYSN  162 (288)
T ss_pred             --------------------------------------------------------------------------CccccC
Confidence                                                                                      000012


Q ss_pred             cccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-------------------cccC
Q 004790          569 FVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-------------------QLRF  628 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-------------------~~~~  628 (730)
                      .+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.+..+.+..+...                   ...+
T Consensus       163 ~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (288)
T cd07871         163 EVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLF  242 (288)
T ss_pred             ceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhcccc
Confidence            368999999999976 45899999999999999999999999876543333221100                   0011


Q ss_pred             C---------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          629 P---------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       629 p---------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      |         ..+..+.+++|||++||++||.+|+|    ++|+++||||
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t----~~~~l~hp~f  288 (288)
T cd07871         243 PQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRIS----AEAALRHSYF  288 (288)
T ss_pred             CccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCC----HHHHhcCCCC
Confidence            1         11356788999999999999999999    7999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-46  Score=402.03  Aligned_cols=257  Identities=28%  Similarity=0.455  Sum_probs=230.4

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ..|+.++.||+|+||.||+|.+..+++.||+|+++....  ...++.+++|+.+|..++++||.++|+.|..+..++++|
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~--~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiM   90 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEA--EDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIM   90 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhc--chhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHH
Confidence            458888999999999999999999999999999987643  355678999999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |||.||++.++++..  ..+.|..+..++++++.||.|||.++.+|||||+.|||+..+|.+||+|||++..+.      
T Consensus        91 ey~~gGsv~~lL~~~--~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~------  162 (467)
T KOG0201|consen   91 EYCGGGSVLDLLKSG--NILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLT------  162 (467)
T ss_pred             HHhcCcchhhhhccC--CCCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeee------
Confidence            999999999998864  556899999999999999999999999999999999999999999999999984321      


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                            .+..+..+|+
T Consensus       163 ----------------------------------------------------------------------~~~~rr~tfv  172 (467)
T KOG0201|consen  163 ----------------------------------------------------------------------NTVKRRKTFV  172 (467)
T ss_pred             ----------------------------------------------------------------------chhhcccccc
Confidence                                                                                  0112335789


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      |||.|||||++++.+|+.++||||||++.|||++|.+||.....+..++.|-...++.-+. .++..+++||..||.+||
T Consensus       173 GTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlflIpk~~PP~L~~-~~S~~~kEFV~~CL~k~P  251 (467)
T KOG0201|consen  173 GTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVLFLIPKSAPPRLDG-DFSPPFKEFVEACLDKNP  251 (467)
T ss_pred             ccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceEEEeccCCCCCcccc-ccCHHHHHHHHHHhhcCc
Confidence            9999999999999999999999999999999999999999999988888887666544443 778899999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      +.||+    |.+||+|+|++..
T Consensus       252 ~~Rps----A~~LLKh~FIk~a  269 (467)
T KOG0201|consen  252 EFRPS----AKELLKHKFIKRA  269 (467)
T ss_pred             ccCcC----HHHHhhhHHHHhc
Confidence            99999    8999999999873

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-46  Score=404.08  Aligned_cols=260  Identities=31%  Similarity=0.489  Sum_probs=233.8

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +-|.+.+.||+|-|+.|-+|++.-||..||||+++|..+..- .-.++..|++.|++++|||||+||++..+...+|||+
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~-st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiL   96 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTL-STGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLIL   96 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchh-hhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEE
Confidence            458899999999999999999999999999999999877553 3356788999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec-CCCceEEecccccccccCCCcc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR-DDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~-~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |+=.||||++++.++. ..+.|..++.|++||+.|+.|+|+..|||||||||||.+- +-|-|||+|||++-.+.+    
T Consensus        97 ELGD~GDl~DyImKHe-~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~P----  171 (864)
T KOG4717|consen   97 ELGDGGDLFDYIMKHE-EGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQP----  171 (864)
T ss_pred             EecCCchHHHHHHhhh-ccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCCC----
Confidence            9999999999988764 5699999999999999999999999999999999998774 569999999999832210    


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               ...-.++
T Consensus       172 -------------------------------------------------------------------------G~kL~Ts  178 (864)
T KOG4717|consen  172 -------------------------------------------------------------------------GKKLTTS  178 (864)
T ss_pred             -------------------------------------------------------------------------cchhhcc
Confidence                                                                                     1122467


Q ss_pred             ccCcccCChhhhccCCCC-CcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHG-SAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~-~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      ||+..|-|||+|+|..|+ +++||||||||||.|++|++||.-.++.+++-.|+...+..|.  .++.+++|||+.||+.
T Consensus       179 CGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDCKYtvPs--hvS~eCrdLI~sMLvR  256 (864)
T KOG4717|consen  179 CGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDCKYTVPS--HVSKECRDLIQSMLVR  256 (864)
T ss_pred             cchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcccccCch--hhhHHHHHHHHHHHhc
Confidence            999999999999999995 6899999999999999999999999999999999999998885  6899999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      ||.+|.+    +++|..|+|++.+|-.
T Consensus       257 dPkkRAs----lEeI~s~~Wlq~~D~~  279 (864)
T KOG4717|consen  257 DPKKRAS----LEEIVSTSWLQAGDRG  279 (864)
T ss_pred             Cchhhcc----HHHHhccccccCCCCC
Confidence            9999999    7999999999998854

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=3e-45  Score=392.83  Aligned_cols=262  Identities=26%  Similarity=0.389  Sum_probs=208.1

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc-----cee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD-----RFS  406 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~-----~~l  406 (730)
                      +|++.+.||+|+||.||+|++..++..||||++..... .......+.+|+++|+.++||||+++++++...     ..+
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   79 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFE-HVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDI   79 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhc-cchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceE
Confidence            59999999999999999999999999999999865322 223345678999999999999999999987532     358


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||| +++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++.....
T Consensus        80 ~lv~e~~-~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~  156 (338)
T cd07859          80 YVVFELM-ESDLHQVIKAN--DDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFND  156 (338)
T ss_pred             EEEEecC-CCCHHHHHHhc--ccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCccccccccc
Confidence            9999999 57898877654  46899999999999999999999999999999999999999999999999998432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ..                                                                         .....
T Consensus       157 ~~-------------------------------------------------------------------------~~~~~  163 (338)
T cd07859         157 TP-------------------------------------------------------------------------TAIFW  163 (338)
T ss_pred             cC-------------------------------------------------------------------------ccccc
Confidence            00                                                                         00011


Q ss_pred             cccccCcccCChhhhcc--CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeee----------------------
Q 004790          567 MSFVGTHEYLAPEIIKG--EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV----------------------  622 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g--~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~----------------------  622 (730)
                      ...+||+.|+|||++.+  ..++.++|||||||++|||++|+.||.+.+....+..+.                      
T Consensus       164 ~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  243 (338)
T cd07859         164 TDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRY  243 (338)
T ss_pred             cCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHH
Confidence            23579999999999976  578999999999999999999999998754322111000                      


Q ss_pred             ----cccccCC---CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          623 ----GQQLRFP---DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       623 ----~~~~~~p---~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                          ......+   ..+..+.++.+||.+||..||++||+    ++++++||||+++..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt----~~e~l~hp~f~~~~~  298 (338)
T cd07859         244 LSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPT----AEEALADPYFKGLAK  298 (338)
T ss_pred             HHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCC----HHHHhcCchhhhcCc
Confidence                0000000   11345778899999999999999999    799999999998664

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=1.3e-44  Score=408.94  Aligned_cols=255  Identities=25%  Similarity=0.371  Sum_probs=200.8

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC------CCCcccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH------PFLPTLYTHFE  401 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H------PnIV~L~~~f~  401 (730)
                      +..++|+++++||+|+||+||+|++..+++.||||++++..    ........|+++++.+.|      ++|++++++|.
T Consensus       126 ~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~  201 (467)
T PTZ00284        126 VSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP----KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQ  201 (467)
T ss_pred             cCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch----hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEE
Confidence            34578999999999999999999999999999999996532    222335567777776644      45888999887


Q ss_pred             cc-ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCC---------
Q 004790          402 TD-RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDG---------  470 (730)
Q Consensus       402 ~~-~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g---------  470 (730)
                      .+ .++|||||++ |++|.+++.+.  +.+++..++.|+.||+.||+|||+ .|||||||||+||||+.++         
T Consensus       202 ~~~~~~~iv~~~~-g~~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~  278 (467)
T PTZ00284        202 NETGHMCIVMPKY-GPCLLDWIMKH--GPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNR  278 (467)
T ss_pred             cCCceEEEEEecc-CCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCccccccccc
Confidence            54 5799999998 88888877654  579999999999999999999997 5999999999999998765         


Q ss_pred             -------ceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCC
Q 004790          471 -------HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKP  543 (730)
Q Consensus       471 -------~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (730)
                             .+||+|||++....                                                           
T Consensus       279 ~~~~~~~~vkl~DfG~~~~~~-----------------------------------------------------------  299 (467)
T PTZ00284        279 ALPPDPCRVRICDLGGCCDER-----------------------------------------------------------  299 (467)
T ss_pred             ccCCCCceEEECCCCccccCc-----------------------------------------------------------
Confidence                   49999999762100                                                           


Q ss_pred             CccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec
Q 004790          544 RSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG  623 (730)
Q Consensus       544 ~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~  623 (730)
                                          .....++||+.|+|||++.+..|+.++|||||||+||||++|+.||.+.++.+.+..+..
T Consensus       300 --------------------~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~  359 (467)
T PTZ00284        300 --------------------HSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEK  359 (467)
T ss_pred             --------------------cccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Confidence                                001245899999999999999999999999999999999999999987665433221110


Q ss_pred             ccccCC----------------------------------------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHH
Q 004790          624 QQLRFP----------------------------------------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEI  663 (730)
Q Consensus       624 ~~~~~p----------------------------------------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~el  663 (730)
                      ....+|                                        .....+..+.|||++||++||.+|++    ++|+
T Consensus       360 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t----a~e~  435 (467)
T PTZ00284        360 TLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLN----ARQM  435 (467)
T ss_pred             HcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCC----HHHH
Confidence            000000                                        00012456789999999999999999    8999


Q ss_pred             HcCCCCCCC
Q 004790          664 KQHPFFEGV  672 (730)
Q Consensus       664 L~HPfF~~v  672 (730)
                      |+||||...
T Consensus       436 L~Hp~~~~~  444 (467)
T PTZ00284        436 TTHPYVLKY  444 (467)
T ss_pred             hcCcccccc
Confidence            999999863

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=2.9e-44  Score=378.43  Aligned_cols=265  Identities=43%  Similarity=0.784  Sum_probs=229.8

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||.||++.+..+++.||+|++.+...........+.+|+++|+.++||||+++++++..+..+|+||
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            46999999999999999999999999999999998776655566778899999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+++++|.+++.+.  ..+++..++.++.||+.||.|||++||+||||||.|||++.+|.+||+|||++.....     
T Consensus        81 e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~-----  153 (290)
T cd05580          81 EYVPGGELFSHLRKS--GRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKG-----  153 (290)
T ss_pred             ecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCC-----
Confidence            999999999988765  5789999999999999999999999999999999999999999999999998743100     


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                                .....+
T Consensus       154 --------------------------------------------------------------------------~~~~~~  159 (290)
T cd05580         154 --------------------------------------------------------------------------RTYTLC  159 (290)
T ss_pred             --------------------------------------------------------------------------CCCCCC
Confidence                                                                                      011236


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      |++.|+|||.+.+..++.++|+||||+++|+|++|+.||..........++......+|  ...+..++++|++||..||
T Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~li~~~l~~~p  237 (290)
T cd05580         160 GTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGKVRFP--SFFSPDAKDLIRNLLQVDL  237 (290)
T ss_pred             CCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCccCC--ccCCHHHHHHHHHHccCCH
Confidence            89999999999988899999999999999999999999987665444445555554444  3468899999999999999


Q ss_pred             CCcCCc-hhcHHHHHcCCCCCCCCcchhc
Q 004790          651 QHRLGV-KRGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       651 ~~R~t~-~~~a~elL~HPfF~~v~w~~~r  678 (730)
                      .+|++. ...++|+++||||+.++|..+.
T Consensus       238 ~~R~~~~~~~~~~l~~~~~~~~~~~~~~~  266 (290)
T cd05580         238 TKRLGNLKNGVNDIKNHPWFAGIDWIALL  266 (290)
T ss_pred             HHccCcccCCHHHHHcCcccccCCHHHHh
Confidence            999942 3448999999999999998764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=1.3e-44  Score=390.01  Aligned_cols=259  Identities=24%  Similarity=0.371  Sum_probs=214.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|++++.||+|+||.||++++..++..||+|++....  .......+.+|+++|+.++||||+++++++..++.+|
T Consensus         2 l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   79 (331)
T cd06649           2 LKDDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEIS   79 (331)
T ss_pred             CCcccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeeccc--CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEE
Confidence            34578999999999999999999999999999999997542  2234567889999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhc-ceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML-GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~-gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      +||||++|++|.+++...  ..+++..+..++.||+.||.|||+. +|+||||||+|||++.++++||+|||++..... 
T Consensus        80 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-  156 (331)
T cd06649          80 ICMEHMDGGSLDQVLKEA--KRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID-  156 (331)
T ss_pred             EEeecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCcccccccc-
Confidence            999999999999988764  4689999999999999999999986 699999999999999999999999998743100 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       157 -----------------------------------------------------------------------------~~~  159 (331)
T cd06649         157 -----------------------------------------------------------------------------SMA  159 (331)
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         001


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeee------------------------
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV------------------------  622 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~------------------------  622 (730)
                      ...+||+.|+|||++.+..++.++|||||||++|||++|+.||...+..+. ..++                        
T Consensus       160 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (331)
T cd06649         160 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKEL-EAIFGRPVVDGEEGEPHSISPRPRPPGR  238 (331)
T ss_pred             ccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHhcccccccccCCccccCcccccccc
Confidence            134789999999999999999999999999999999999999975432111 0000                        


Q ss_pred             -----------------------cccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          623 -----------------------GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       623 -----------------------~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                                             ............+.++++||.+||.+||++||+    +.+|++||||+...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt----~~ell~h~~~~~~~  308 (331)
T cd06649         239 PVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERAD----LKMLMNHTFIKRSE  308 (331)
T ss_pred             cccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCC----HHHHhcChHHhhcc
Confidence                                   000000011246789999999999999999999    79999999998643

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=1e-45  Score=390.43  Aligned_cols=262  Identities=26%  Similarity=0.428  Sum_probs=217.5

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCC-Cccccccccccc----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF-LPTLYTHFETDR----  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPn-IV~L~~~f~~~~----  404 (730)
                      +..|..+++||+|+||+||+|+.+.+|+.||+|+++..... +..-..+.+|+.+|+.|+|+| |++|++++.+.+    
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~-EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~   88 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEE-EGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRG   88 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccc-cCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccc
Confidence            56688889999999999999999999999999999765432 122345689999999999999 999999998877    


Q ss_pred             --eeeEEeeecCCCCccccccccCC--CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          405 --FSCLVMEYCPGGDLHTLRQRQPG--KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       405 --~l~LVmEy~~GGsL~~ll~~~~~--~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                        .+|||+||+ .-||..++...+.  ..++...++.+++||+.||+|||++||+||||||+||||+.+|.+||+|||+|
T Consensus        89 ~~~l~lvfe~~-d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlA  167 (323)
T KOG0594|consen   89 IGKLYLVFEFL-DRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLA  167 (323)
T ss_pred             cceEEEEEEee-cccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchH
Confidence              899999999 7899888877643  35777899999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +.....                                                                .         
T Consensus       168 ra~~ip----------------------------------------------------------------~---------  174 (323)
T KOG0594|consen  168 RAFSIP----------------------------------------------------------------M---------  174 (323)
T ss_pred             HHhcCC----------------------------------------------------------------c---------
Confidence            532100                                                                0         


Q ss_pred             cccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec---c------------
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG---Q------------  624 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~---~------------  624 (730)
                         ....+-++|.+|+|||+|.|. .|+..+||||+|||++||++++..|.|..+.+++..|..   .            
T Consensus       175 ---~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~  251 (323)
T KOG0594|consen  175 ---RTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSL  251 (323)
T ss_pred             ---ccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCcccc
Confidence               001234899999999999998 589999999999999999999999999888777765542   0            


Q ss_pred             ---cccCCCC----------CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          625 ---QLRFPDS----------PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       625 ---~~~~p~~----------~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                         ...|+.+          +..+.+..||+.+||+++|.+|++    |..++.||||..+.
T Consensus       252 ~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~S----a~~al~h~yf~~~~  309 (323)
T KOG0594|consen  252 PDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRIS----AKGALTHPYFSELP  309 (323)
T ss_pred             ccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcC----HHHHhcChhhcccc
Confidence               1122222          222347889999999999999999    89999999999763

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-45  Score=399.30  Aligned_cols=261  Identities=30%  Similarity=0.495  Sum_probs=219.3

Q ss_pred             eEEE--eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          333 FRLL--KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       333 y~il--~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      |++.  ++||+|.||+||-|+++.+|+.||||+|+|..+..+ +...+++|+.||+.+.||.||.|...|++...+++||
T Consensus       564 YQif~devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~k-qesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVM  642 (888)
T KOG4236|consen  564 YQIFADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTK-QESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVM  642 (888)
T ss_pred             HHhhhHhhccCCcceeeecceecccCceeeeeeeecccCCCc-hHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEe
Confidence            4444  689999999999999999999999999999877653 4477899999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC---CceEEecccccccccCCC
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD---GHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~---g~vKL~DFGlA~~~~~~~  487 (730)
                      |-+ .||+..++-....++|++...+|++.||+.||.|||-++|||.||||||||+...   -.+||||||+|+.+.   
T Consensus       643 EKl-~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIg---  718 (888)
T KOG4236|consen  643 EKL-HGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIG---  718 (888)
T ss_pred             hhh-cchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecc---
Confidence            999 5566665555566889999999999999999999999999999999999999754   379999999996431   


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                    .+                            ....
T Consensus       719 ----------------------------------------------Ek----------------------------sFRr  724 (888)
T KOG4236|consen  719 ----------------------------------------------EK----------------------------SFRR  724 (888)
T ss_pred             ----------------------------------------------hh----------------------------hhhh
Confidence                                                          11                            1123


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC--CCCCCChhHHHHHHhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP--DSPATSYASRDLIRGL  645 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p--~~~~~s~~~~dLI~~l  645 (730)
                      +.+|||.|+|||+|+.++|...-||||+|||+|--|.|..||....+  .-.+|.+..+-+|  .|..++.++.|||..+
T Consensus       725 sVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEd--IndQIQNAaFMyPp~PW~eis~~AidlIn~L  802 (888)
T KOG4236|consen  725 SVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDED--INDQIQNAAFMYPPNPWSEISPEAIDLINNL  802 (888)
T ss_pred             hhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccc--hhHHhhccccccCCCchhhcCHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999964322  2223333333333  4567899999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCCCCC-Ccchhc
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFFEGV-NWALIR  678 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF~~v-~w~~~r  678 (730)
                      |+..-.+|.+    .+..|.|||+++. -|-.+|
T Consensus       803 LqVkm~kRys----vdk~lsh~Wlq~yq~w~DLR  832 (888)
T KOG4236|consen  803 LQVKMRKRYS----VDKSLSHPWLQDYQTWLDLR  832 (888)
T ss_pred             HHHHHHHhcc----hHhhccchhhhcchHHHHHH
Confidence            9999999999    5899999999975 355444

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=1.6e-44  Score=379.03  Aligned_cols=256  Identities=26%  Similarity=0.378  Sum_probs=204.8

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECC-CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc---CCCCCcccccccc-----
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSS-TRCYFAMKVMDKASLASRKKLTRAQTEREILQLL---DHPFLPTLYTHFE-----  401 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~-t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L---~HPnIV~L~~~f~-----  401 (730)
                      .+|++++.||+|+||+||+|++.. +++.||+|+++...... .....+.+|+.+++.+   +||||+++++++.     
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~   79 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   79 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCC-CchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCC
Confidence            369999999999999999999854 56889999987543222 2223455677777665   7999999999874     


Q ss_pred             ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      ....+|+||||+. ++|..++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.
T Consensus        80 ~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~  158 (290)
T cd07862          80 RETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR  158 (290)
T ss_pred             CCCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceE
Confidence            3567899999995 689888876655678999999999999999999999999999999999999999999999999984


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      .....                                                                           
T Consensus       159 ~~~~~---------------------------------------------------------------------------  163 (290)
T cd07862         159 IYSFQ---------------------------------------------------------------------------  163 (290)
T ss_pred             eccCC---------------------------------------------------------------------------
Confidence            32100                                                                           


Q ss_pred             ccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-----cCC-------
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-----RFP-------  629 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-----~~p-------  629 (730)
                        .......||+.|+|||++.+..++.++|||||||++|||++|++||.+....+.+..++....     .++       
T Consensus       164 --~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  241 (290)
T cd07862         164 --MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPR  241 (290)
T ss_pred             --cccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccc
Confidence              011234789999999999999999999999999999999999999998765544433321100     000       


Q ss_pred             -------------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          630 -------------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       630 -------------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                                   ..+..+..+++||.+||..||++||+    +.++++||||
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s----~~~~l~hp~f  290 (290)
T cd07862         242 QAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRIS----AYSALSHPYF  290 (290)
T ss_pred             hhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCC----HHHHhcCCCC
Confidence                         01346778899999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.8e-45  Score=402.93  Aligned_cols=260  Identities=30%  Similarity=0.475  Sum_probs=234.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce-eeE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF-SCL  408 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~-l~L  408 (730)
                      +++|..++.+|+|+||.+++++++..++.|++|.+.......+.. ..+..|+.++.++.|||||.+++.|..++. +||
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r-~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~I   81 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPER-RSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCI   81 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhh-HHHHHHHHHHHhccCCCeeeeccchhcCCceEEE
Confidence            578999999999999999999999999999999998776655444 368889999999999999999999998887 999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||+||+||+|.+++.++++..|+|..+..|+.||+.||.|||+++|+|||||+.||+++.++.|||.|||+|+.+...  
T Consensus        82 vm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~--  159 (426)
T KOG0589|consen   82 VMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPE--  159 (426)
T ss_pred             EEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcCCc--
Confidence            999999999999999998899999999999999999999999999999999999999999999999999999754210  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                .....+
T Consensus       160 --------------------------------------------------------------------------~~~a~t  165 (426)
T KOG0589|consen  160 --------------------------------------------------------------------------DSLAST  165 (426)
T ss_pred             --------------------------------------------------------------------------hhhhhe
Confidence                                                                                      012346


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .+|||.||.||++.+.+|+.++|||||||++|||++-+++|.+.+......+|.... -.|.+...+.+++.||..||.+
T Consensus       166 vvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~~~-~~Plp~~ys~el~~lv~~~l~~  244 (426)
T KOG0589|consen  166 VVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINRGL-YSPLPSMYSSELRSLVKSMLRK  244 (426)
T ss_pred             ecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHHHHHHHhhcc-CCCCCccccHHHHHHHHHHhhc
Confidence            799999999999999999999999999999999999999999987777776776655 4566678899999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      +|..||+    +.+||.+|....
T Consensus       245 ~P~~RPs----a~~LL~~P~l~~  263 (426)
T KOG0589|consen  245 NPEHRPS----ALELLRRPHLLR  263 (426)
T ss_pred             CCccCCC----HHHHhhChhhhh
Confidence            9999999    799999988773

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=9.4e-45  Score=406.20  Aligned_cols=254  Identities=30%  Similarity=0.469  Sum_probs=215.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-C-----CCCccccccccccc
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-H-----PFLPTLYTHFETDR  404 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-H-----PnIV~L~~~f~~~~  404 (730)
                      .+|.+++.||+|+||+|-+|.+..|++.||||+++...    ....+.+.|+.||..|+ |     -|||+++++|...+
T Consensus       186 ~rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k----~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~  261 (586)
T KOG0667|consen  186 YRYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKK----RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRN  261 (586)
T ss_pred             EEEEEEEEecccccceeEEEEecCCCcEEEEEeeccCh----HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccc
Confidence            38999999999999999999999999999999997643    45567788999999996 4     39999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC--CceEEeccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD--GHIMLSDFDLSLR  482 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~--g~vKL~DFGlA~~  482 (730)
                      ++|||+|.+ +-+|+++++...-..|+...++.++.||+.||.+||++||||.|||||||||.+.  ..|||+|||.|..
T Consensus       262 HlciVfELL-~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~  340 (586)
T KOG0667|consen  262 HLCIVFELL-STNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCF  340 (586)
T ss_pred             ceeeeehhh-hhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecccccc
Confidence            999999999 8899999998877889999999999999999999999999999999999999753  4799999998832


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                                                       +.-                                            
T Consensus       341 ---------------------------------~~q--------------------------------------------  343 (586)
T KOG0667|consen  341 ---------------------------------ESQ--------------------------------------------  343 (586)
T ss_pred             ---------------------------------cCC--------------------------------------------
Confidence                                             111                                            


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-------------------
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-------------------  623 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-------------------  623 (730)
                        +..+++.+..|+|||+|.|.+|+.+.||||||||++||++|.+.|.|.++.+++..|+.                   
T Consensus       344 --~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kf  421 (586)
T KOG0667|consen  344 --RVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKF  421 (586)
T ss_pred             --cceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHHHhcccccee
Confidence              11256889999999999999999999999999999999999999999877666644431                   


Q ss_pred             ---------------------------------ccccCC-CCC--------CCChhHHHHHHhhhcCCCCCcCCchhcHH
Q 004790          624 ---------------------------------QQLRFP-DSP--------ATSYASRDLIRGLLVKEPQHRLGVKRGAT  661 (730)
Q Consensus       624 ---------------------------------~~~~~p-~~~--------~~s~~~~dLI~~lL~~DP~~R~t~~~~a~  661 (730)
                                                       .....| ...        .-...+.|||.+||.+||.+|+|    +.
T Consensus       422 f~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~t----p~  497 (586)
T KOG0667|consen  422 FTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERIT----PA  497 (586)
T ss_pred             hhccCCceeeeeeecccccccchhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCC----HH
Confidence                                             000111 100        11235679999999999999999    89


Q ss_pred             HHHcCCCCCCC
Q 004790          662 EIKQHPFFEGV  672 (730)
Q Consensus       662 elL~HPfF~~v  672 (730)
                      ++|+||||.+.
T Consensus       498 qal~Hpfl~~~  508 (586)
T KOG0667|consen  498 QALNHPFLTGT  508 (586)
T ss_pred             HHhcCcccccc
Confidence            99999999963

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-44  Score=393.74  Aligned_cols=253  Identities=27%  Similarity=0.434  Sum_probs=215.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc-ee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR-FS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~-~l  406 (730)
                      +...++.+.+.||.|+||+||++.++++. .||+|++......... ...+.+|+.+|..|+|||||++++++.... .+
T Consensus        38 i~~~~l~~~~~iG~G~~g~V~~~~~~g~~-~vavK~~~~~~~~~~~-~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~  115 (362)
T KOG0192|consen   38 IDPDELPIEEVLGSGSFGTVYKGKWRGTD-VVAVKIISDPDFDDES-RKAFRREASLLSRLRHPNIVQFYGACTSPPGSL  115 (362)
T ss_pred             cChHHhhhhhhcccCCceeEEEEEeCCce-eEEEEEecchhcChHH-HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCce
Confidence            44566677778999999999999998765 3999999876554444 778999999999999999999999999887 79


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc-eeecccCCccEEecCCC-ceEEeccccccccc
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG-VVYRDLKPENVLVRDDG-HIMLSDFDLSLRCA  484 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g-IVHRDLKPeNILl~~~g-~vKL~DFGlA~~~~  484 (730)
                      +|||||+++|+|..++++.....++...+..++.||+.||+|||+++ ||||||||+|||++.++ ++||+|||+++...
T Consensus       116 ~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~  195 (362)
T KOG0192|consen  116 CIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKV  195 (362)
T ss_pred             EEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceeec
Confidence            99999999999999998754578999999999999999999999999 99999999999999998 99999999995421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ...                                                                            .
T Consensus       196 ~~~----------------------------------------------------------------------------~  199 (362)
T KOG0192|consen  196 ISK----------------------------------------------------------------------------T  199 (362)
T ss_pred             ccc----------------------------------------------------------------------------c
Confidence            100                                                                            0


Q ss_pred             cccccccCcccCChhhhc--cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIK--GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~--g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      ..+...||+.|||||++.  ...|+.++||||||++||||+||+.||.+.........++.+..+.+....++..+..||
T Consensus       200 ~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~  279 (362)
T KOG0192|consen  200 SMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLM  279 (362)
T ss_pred             cccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHH
Confidence            112357999999999999  568999999999999999999999999998875555556555555554455899999999


Q ss_pred             HhhhcCCCCCcCCchh
Q 004790          643 RGLLVKEPQHRLGVKR  658 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~  658 (730)
                      .+||..||.+||++.+
T Consensus       280 ~~CW~~dp~~RP~f~e  295 (362)
T KOG0192|consen  280 ERCWLVDPSRRPSFLE  295 (362)
T ss_pred             HHhCCCCCCcCCCHHH
Confidence            9999999999999743

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.6e-44  Score=398.31  Aligned_cols=254  Identities=23%  Similarity=0.335  Sum_probs=205.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +...+|++++.||+|+||.||+|++..+++.||||....         ..+.+|+++|+.|+||||++++++|..+...|
T Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~---------~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~  159 (391)
T PHA03212         89 IEKAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR---------GGTATEAHILRAINHPSIIQLKGTFTYNKFTC  159 (391)
T ss_pred             cccCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh---------hhhHHHHHHHHhCCCCCCCCEeEEEEECCeeE
Confidence            455789999999999999999999999999999997532         23568999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +|||++ +++|..++...  ..+++..++.++.||+.||.|||++|||||||||+|||++.+|.+||+|||+|...... 
T Consensus       160 lv~e~~-~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~-  235 (391)
T PHA03212        160 LILPRY-KTDLYCYLAAK--RNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDI-  235 (391)
T ss_pred             EEEecC-CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcccccccc-
Confidence            999999 57887776554  46889999999999999999999999999999999999999999999999998421000 


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                ......
T Consensus       236 --------------------------------------------------------------------------~~~~~~  241 (391)
T PHA03212        236 --------------------------------------------------------------------------NANKYY  241 (391)
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      000112


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc-------ceeeeec-----------------
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA-------TLFNVVG-----------------  623 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~-------~l~~i~~-----------------  623 (730)
                      .++||+.|+|||++.+..++.++|||||||+||||++|+.||.......       .+..++.                 
T Consensus       242 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  321 (391)
T PHA03212        242 GWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANL  321 (391)
T ss_pred             cccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHH
Confidence            3589999999999999999999999999999999999998876432110       1100100                 


Q ss_pred             ---------ccccCC----C---CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          624 ---------QQLRFP----D---SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       624 ---------~~~~~p----~---~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                               .....+    .   ....+.++++||.+||.+||.+||+    |+|+|+||||+.+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpt----a~elL~hp~f~~~  382 (391)
T PHA03212        322 DEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPS----AEALLDFAAFQDI  382 (391)
T ss_pred             HHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCC----HHHHhcChhhccC
Confidence                     000000    0   0124567899999999999999999    8999999999863

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.1e-45  Score=385.18  Aligned_cols=254  Identities=28%  Similarity=0.494  Sum_probs=209.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc--c---ce
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET--D---RF  405 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~--~---~~  405 (730)
                      -.|+-.+++|+|+||.||.|....++..||||.+-.+.-       .-.+|++||+.++|||||+|..+|..  +   -+
T Consensus        24 i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r-------~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~   96 (364)
T KOG0658|consen   24 ISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR-------YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVY   96 (364)
T ss_pred             EEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC-------cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhH
Confidence            358889999999999999999999999999998754321       23479999999999999999998852  2   25


Q ss_pred             eeEEeeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC-CceEEeccccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD-GHIMLSDFDLSLR  482 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~-g~vKL~DFGlA~~  482 (730)
                      +.|||||| ..+|+.+++..  .+..++...++.|++||++||.|||+.||+||||||+|||+|.+ |.+||||||.|+.
T Consensus        97 lnlVleym-P~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~  175 (364)
T KOG0658|consen   97 LNLVLEYM-PETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKV  175 (364)
T ss_pred             HHHHHHhc-hHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCccee
Confidence            67999999 56787776631  23578888999999999999999999999999999999999976 9999999999965


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      +..                                                                             
T Consensus       176 L~~-----------------------------------------------------------------------------  178 (364)
T KOG0658|consen  176 LVK-----------------------------------------------------------------------------  178 (364)
T ss_pred             ecc-----------------------------------------------------------------------------
Confidence            321                                                                             


Q ss_pred             cccccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-----------------c
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-----------------Q  624 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-----------------~  624 (730)
                      ...+.++..|..|+|||.|.|.. |+.++||||.||++.||+-|++.|.|.+..+++..|++                 .
T Consensus       179 ~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~  258 (364)
T KOG0658|consen  179 GEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYT  258 (364)
T ss_pred             CCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccc
Confidence            11224678899999999999865 89999999999999999999999999877776655431                 0


Q ss_pred             cccCC----------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          625 QLRFP----------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       625 ~~~~p----------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      ...+|          .....+.++.||+.++|.++|.+|.+    +.|+++||||+.+.
T Consensus       259 ~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~----~~~~l~h~fFdelr  313 (364)
T KOG0658|consen  259 EFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLS----ALEALAHPFFDELR  313 (364)
T ss_pred             cccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCC----HHHHhcchhhHHhh
Confidence            11111          12456789999999999999999999    89999999999753

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=1.9e-44  Score=405.24  Aligned_cols=257  Identities=26%  Similarity=0.442  Sum_probs=205.4

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc------
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET------  402 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~------  402 (730)
                      ...+|++++.||+|+||+||+|.+..+++.||||++.+..       ....+|+.+|+.++||||++++++|..      
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~-------~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~  136 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP-------QYKNRELLIMKNLNHINIIFLKDYYYTECFKKN  136 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc-------chHHHHHHHHHhcCCCCCcceeeeEeecccccC
Confidence            4568999999999999999999999999999999886532       123479999999999999999887643      


Q ss_pred             --cceeeEEeeecCCCCccccccc--cCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC-ceEEecc
Q 004790          403 --DRFSCLVMEYCPGGDLHTLRQR--QPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG-HIMLSDF  477 (730)
Q Consensus       403 --~~~l~LVmEy~~GGsL~~ll~~--~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g-~vKL~DF  477 (730)
                        ..++|+||||+++ +|..++..  .....+++..++.|+.||+.||.|||++|||||||||+||||+.++ .+||+||
T Consensus       137 ~~~~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DF  215 (440)
T PTZ00036        137 EKNIFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDF  215 (440)
T ss_pred             CCceEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeecc
Confidence              2357899999964 66655442  2335789999999999999999999999999999999999998665 6999999


Q ss_pred             cccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccc
Q 004790          478 DLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPEL  557 (730)
Q Consensus       478 GlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (730)
                      |+|+.+..                                                                        
T Consensus       216 Gla~~~~~------------------------------------------------------------------------  223 (440)
T PTZ00036        216 GSAKNLLA------------------------------------------------------------------------  223 (440)
T ss_pred             ccchhccC------------------------------------------------------------------------
Confidence            99853210                                                                        


Q ss_pred             ccccccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc------------
Q 004790          558 VAEPTAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ------------  624 (730)
Q Consensus       558 ~~e~~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~------------  624 (730)
                           .....+++||+.|+|||++.+. .|+.++|||||||+||||++|++||.+....+.+.+++..            
T Consensus       224 -----~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~  298 (440)
T PTZ00036        224 -----GQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEM  298 (440)
T ss_pred             -----CCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHh
Confidence                 0011235789999999999875 6899999999999999999999999987655444333210            


Q ss_pred             -----cccCCC----------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          625 -----QLRFPD----------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       625 -----~~~~p~----------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                           .+.+|.          ....+.++++||.+||.+||.+|++    +.|+++||||+.+.+
T Consensus       299 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~t----a~e~l~hp~f~~~~~  359 (440)
T PTZ00036        299 NPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLN----PIEALADPFFDDLRD  359 (440)
T ss_pred             chhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcC----HHHHhCChhHHhhhc
Confidence                 111111          1235789999999999999999999    799999999997654

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=1.7e-43  Score=375.63  Aligned_cols=294  Identities=38%  Similarity=0.659  Sum_probs=236.8

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||.||++.+..+++.||+|.+.+...........+.+|+++++.++||||+++++.|.++..+|+||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            36999999999999999999999999999999998765555555677889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++|++|..++...  +.+++..++.++.|++.||.|||++||+||||||+|||++.+|.+||+|||+++........ 
T Consensus        81 e~~~g~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~-  157 (305)
T cd05609          81 EYVEGGDCATLLKNI--GALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTT-  157 (305)
T ss_pred             ecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCcCccc-
Confidence            999999999988664  56899999999999999999999999999999999999999999999999988431100000 


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                      .                                       .+.....                     ............
T Consensus       158 ~---------------------------------------~~~~~~~---------------------~~~~~~~~~~~~  177 (305)
T cd05609         158 N---------------------------------------LYEGHIE---------------------KDTREFLDKQVC  177 (305)
T ss_pred             c---------------------------------------ccccccc---------------------cchhhccccCCc
Confidence            0                                       0000000                     000000111246


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCC-CCCChhHHHHHHhhhcCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS-PATSYASRDLIRGLLVKE  649 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~-~~~s~~~~dLI~~lL~~D  649 (730)
                      |+..|+|||.+.+..++.++|+|||||++|||++|..||.+....+.+..+.......|.. ...+.++++||.+||..|
T Consensus       178 ~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  257 (305)
T cd05609         178 GTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQN  257 (305)
T ss_pred             cCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHhccC
Confidence            8899999999999899999999999999999999999998776555555544444444432 256888999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRP  688 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p  688 (730)
                      |++||++ ..+.++++||||...+|+.......+.+|.+
T Consensus       258 P~~R~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  295 (305)
T cd05609         258 PLERLGT-GGAFEVKQHRFFLGLDWNGLLRQKAEFIPQL  295 (305)
T ss_pred             hhhccCc-cCHHHHHhCccccCCCHHHHhhcCCCCCCCC
Confidence            9999995 3478999999999999998766655556665

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=1e-43  Score=387.63  Aligned_cols=255  Identities=25%  Similarity=0.422  Sum_probs=205.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc------
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD------  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~------  403 (730)
                      .++|++++.||+|+||.||++.+..+++.||||++.+... .......+.+|+.+++.++||||++++++|...      
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCcccc-CchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            5789999999999999999999999999999999975432 234445678899999999999999999987643      


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ..+|+||||++ ++|..++..    .+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus       102 ~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~  176 (364)
T cd07875         102 QDVYIVMELMD-ANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  176 (364)
T ss_pred             CeEEEEEeCCC-CCHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCcccc
Confidence            45799999995 466665543    4788899999999999999999999999999999999999999999999998431


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                             .
T Consensus       177 ~~-----------------------------------------------------------------------------~  179 (364)
T cd07875         177 GT-----------------------------------------------------------------------------S  179 (364)
T ss_pred             CC-----------------------------------------------------------------------------C
Confidence            00                                                                             0


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-------------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-------------------  624 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-------------------  624 (730)
                      ......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+.+++..                   
T Consensus       180 ~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (364)
T cd07875         180 FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTY  259 (364)
T ss_pred             CcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHH
Confidence            0011347899999999999999999999999999999999999999876543333222110                   


Q ss_pred             ---c--------------ccCCC----CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          625 ---Q--------------LRFPD----SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       625 ---~--------------~~~p~----~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                         .              ..++.    ....+..+++||.+||..||.+|||    +.++|+||||..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t----~~e~L~hp~~~~  323 (364)
T cd07875         260 VENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRIS----VDEALQHPYINV  323 (364)
T ss_pred             HhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCC----HHHHhcCccccc
Confidence               0              00010    1123567899999999999999999    799999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=6e-44  Score=373.92  Aligned_cols=255  Identities=27%  Similarity=0.413  Sum_probs=202.9

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc---CCCCCccccccccc-----c
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL---DHPFLPTLYTHFET-----D  403 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L---~HPnIV~L~~~f~~-----~  403 (730)
                      +|++++.||+|+||+||+|+++.+++.||+|.++...... .....+.+|+++++.+   +||||++++++|..     .
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~   79 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNED-GLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRE   79 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCC-CCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCC
Confidence            5899999999999999999999999999999987543221 1122345677776655   79999999998864     3


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ..+|+||||+. ++|..++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...
T Consensus        80 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~  158 (288)
T cd07863          80 TKVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIY  158 (288)
T ss_pred             ceEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCccccc
Confidence            56899999996 58888777655556899999999999999999999999999999999999999999999999988431


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ...                                                                             
T Consensus       159 ~~~-----------------------------------------------------------------------------  161 (288)
T cd07863         159 SCQ-----------------------------------------------------------------------------  161 (288)
T ss_pred             cCc-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-----------cccCC---
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-----------QLRFP---  629 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-----------~~~~p---  629 (730)
                      .......||+.|+|||++.+..++.++|||||||++|||++|++||.+......+.++...           ....+   
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (288)
T cd07863         162 MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGA  241 (288)
T ss_pred             ccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccc
Confidence            0001246899999999999999999999999999999999999999876544333222110           00000   


Q ss_pred             -----------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          630 -----------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       630 -----------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                                 ..+.++.++++||.+||++||++||+    +.+++.||||
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~~~l~hp~f  288 (288)
T cd07863         242 FSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRIS----AFRALQHPFF  288 (288)
T ss_pred             cCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCC----HHHHhcCCCC
Confidence                       01346778899999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=9.5e-44  Score=387.13  Aligned_cols=255  Identities=26%  Similarity=0.436  Sum_probs=204.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc-----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR-----  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~-----  404 (730)
                      .++|++++.||+|+||.||++++..+++.||+|++.+... .......+.+|+.+++.++||||++++++|....     
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQ-NQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEeccccc-chhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            5789999999999999999999999999999999975432 2344566789999999999999999999986543     


Q ss_pred             -eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          405 -FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       405 -~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                       .+|+||||+.+ +|...+..    .+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++..
T Consensus        99 ~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~  173 (359)
T cd07876          99 QDVYLVMELMDA-NLCQVIHM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  173 (359)
T ss_pred             ceeEEEEeCCCc-CHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCcccc
Confidence             57999999955 56555432    4888999999999999999999999999999999999999999999999998421


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                             .
T Consensus       174 ~~-----------------------------------------------------------------------------~  176 (359)
T cd07876         174 CT-----------------------------------------------------------------------------N  176 (359)
T ss_pred             cc-----------------------------------------------------------------------------C
Confidence            00                                                                             0


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeee---------------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV---------------------  622 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~---------------------  622 (730)
                      .......||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+....+..+.                     
T Consensus       177 ~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (359)
T cd07876         177 FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNY  256 (359)
T ss_pred             ccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            00112478999999999999999999999999999999999999998765432221110                     


Q ss_pred             -ccccc--------------CCC----CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          623 -GQQLR--------------FPD----SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       623 -~~~~~--------------~p~----~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                       .....              ++.    ....+.++++||.+||..||++||+    +.|+|+||||..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t----~~e~l~hp~~~~  320 (359)
T cd07876         257 VENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRIS----VDEALRHPYITV  320 (359)
T ss_pred             HhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCC----HHHHhcCchhhh
Confidence             00000              010    1123578899999999999999999    799999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=6.1e-44  Score=388.13  Aligned_cols=256  Identities=27%  Similarity=0.378  Sum_probs=205.8

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ..++|+++++||+|+||.||+|++..+++.||||++....  .......+.+|+++|+.++|+||++++++|..++.+|+
T Consensus        72 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  149 (353)
T PLN00034         72 SLSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH--EDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQV  149 (353)
T ss_pred             CHHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCC--cHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEE
Confidence            3467889999999999999999999999999999986542  22345678899999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||+++|+|...      ..+.+..+..++.||+.||+|||++||+||||||+||||+.++.+||+|||++......  
T Consensus       150 v~e~~~~~~L~~~------~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~--  221 (353)
T PLN00034        150 LLEFMDGGSLEGT------HIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQT--  221 (353)
T ss_pred             EEecCCCCccccc------ccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceecccc--
Confidence            9999999998653      23567788889999999999999999999999999999999999999999998432100  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                ......
T Consensus       222 --------------------------------------------------------------------------~~~~~~  227 (353)
T PLN00034        222 --------------------------------------------------------------------------MDPCNS  227 (353)
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      000113


Q ss_pred             cccCcccCChhhhcc-----CCCCCcceeechhHHHHHHhhCCCCCCCCCCccce--eeeecccccCCCCCCCChhHHHH
Q 004790          569 FVGTHEYLAPEIIKG-----EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL--FNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g-----~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l--~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      .+||..|+|||++..     ..++.++|||||||++|||++|+.||......+..  ...+............+.++++|
T Consensus       228 ~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  307 (353)
T PLN00034        228 SVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQPPEAPATASREFRHF  307 (353)
T ss_pred             cccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccCCCCCCCccCHHHHHH
Confidence            479999999999853     22456899999999999999999999743222111  11111111122234678899999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      |.+||..||++||+    +.|+++||||.+-
T Consensus       308 i~~~l~~~P~~Rpt----~~ell~hp~~~~~  334 (353)
T PLN00034        308 ISCCLQREPAKRWS----AMQLLQHPFILRA  334 (353)
T ss_pred             HHHHccCChhhCcC----HHHHhcCcccccC
Confidence            99999999999999    7999999999873

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=8.2e-44  Score=384.67  Aligned_cols=259  Identities=24%  Similarity=0.385  Sum_probs=212.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|+++++||.|+||.||++++..++..+|+|++....  .......+.+|+++|+.++||||++++++|.+++.+|
T Consensus         2 l~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   79 (333)
T cd06650           2 LKDDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEIS   79 (333)
T ss_pred             cchhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeeccc--CHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEE
Confidence            44578999999999999999999999999999999987542  2234456889999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhc-ceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML-GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~-gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      +||||++|++|.+++.+.  +.+++..++.++.||+.||.|||+. +|+||||||+|||++.+|.+||+|||++..... 
T Consensus        80 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~-  156 (333)
T cd06650          80 ICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID-  156 (333)
T ss_pred             EEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhh-
Confidence            999999999999988764  5689999999999999999999974 799999999999999999999999999843200 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       157 -----------------------------------------------------------------------------~~~  159 (333)
T cd06650         157 -----------------------------------------------------------------------------SMA  159 (333)
T ss_pred             -----------------------------------------------------------------------------hcc
Confidence                                                                                         000


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceee--------------------------
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN--------------------------  620 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~--------------------------  620 (730)
                      ..++||+.|+|||++.+..++.++|+|||||++|||++|+.||...........                          
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (333)
T cd06650         160 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLS  239 (333)
T ss_pred             ccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhh
Confidence            124789999999999999999999999999999999999999975432211000                          


Q ss_pred             ------------------eecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          621 ------------------VVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       621 ------------------i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                                        +.............+.++++||.+||++||++||+    +.|+++||||+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt----~~ell~h~~~~~~  305 (333)
T cd06650         240 SYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERAD----LKQLMVHAFIKRS  305 (333)
T ss_pred             hhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcC----HHHHhhCHHHhcC
Confidence                              00000000001135678999999999999999999    7999999999863

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=1.3e-43  Score=370.65  Aligned_cols=261  Identities=35%  Similarity=0.576  Sum_probs=218.7

Q ss_pred             EccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCc
Q 004790          339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL  418 (730)
Q Consensus       339 LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL  418 (730)
                      ||+|+||+||+|.+..+++.||+|++.+...........+.+|+++|+.++||||+++++.|+..+.+|+||||++|++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            69999999999999999999999999876554444555677899999999999999999999999999999999999999


Q ss_pred             cccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCC
Q 004790          419 HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSD  498 (730)
Q Consensus       419 ~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~  498 (730)
                      .+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....             
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~-------------  147 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKG-------------  147 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhcc-------------
Confidence            9888765445799999999999999999999999999999999999999999999999998743210             


Q ss_pred             CCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCCh
Q 004790          499 PSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAP  578 (730)
Q Consensus       499 ~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~AP  578 (730)
                                                                                      ........|+..|+||
T Consensus       148 ----------------------------------------------------------------~~~~~~~~~~~~y~~P  163 (277)
T cd05577         148 ----------------------------------------------------------------GKKIKGRAGTPGYMAP  163 (277)
T ss_pred             ----------------------------------------------------------------CCccccccCCCCcCCH
Confidence                                                                            0000123578899999


Q ss_pred             hhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcccee----eeecccccCCCCCCCChhHHHHHHhhhcCCCCCcC
Q 004790          579 EIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF----NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRL  654 (730)
Q Consensus       579 Evl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~----~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~  654 (730)
                      |++.+..++.++|+|||||++|+|++|+.||..........    .+.....  ......+..+++||.+||..||.+|+
T Consensus       164 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~R~  241 (277)
T cd05577         164 EVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAV--EYPDKFSPEAKDLCEALLQKDPEKRL  241 (277)
T ss_pred             HHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhccccccc--cCCccCCHHHHHHHHHHccCChhHcc
Confidence            99998889999999999999999999999998754321111    1121222  22345688999999999999999999


Q ss_pred             Cchh-cHHHHHcCCCCCCCCcchhc
Q 004790          655 GVKR-GATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       655 t~~~-~a~elL~HPfF~~v~w~~~r  678 (730)
                      ++++ .+.++++||||..++|..+.
T Consensus       242 ~~~~~~~~~ll~h~~~~~~~~~~~~  266 (277)
T cd05577         242 GCRGGSADEVREHPLFKDLNWRRLE  266 (277)
T ss_pred             CCCcccHHHHHhChhhhcCChhhhh
Confidence            8876 79999999999999998774

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=1.5e-43  Score=387.60  Aligned_cols=261  Identities=23%  Similarity=0.325  Sum_probs=211.0

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc-----ee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR-----FS  406 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~-----~l  406 (730)
                      +|++++.||+|+||.||++++..+++.||||++.+.. .......++.+|+++|+.++||||+++++++....     .+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   79 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVF-QNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEI   79 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccc-cchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceE
Confidence            4889999999999999999999999999999986532 22234567889999999999999999999998776     78


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+. ++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.....
T Consensus        80 ~lv~e~~~-~~l~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~  156 (372)
T cd07853          80 YVVTELMQ-SDLHKIIVSP--QPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPD  156 (372)
T ss_pred             EEEeeccc-cCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeecccC
Confidence            99999995 6787766543  57999999999999999999999999999999999999999999999999998432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       157 ---------------------------------------------------------------------------~~~~~  161 (372)
T cd07853         157 ---------------------------------------------------------------------------ESKHM  161 (372)
T ss_pred             ---------------------------------------------------------------------------ccccC
Confidence                                                                                       00001


Q ss_pred             cccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec----------------------
Q 004790          567 MSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG----------------------  623 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~----------------------  623 (730)
                      ...++|+.|+|||++.+.. ++.++|||||||++|||++|+.||.+.+....+..+..                      
T Consensus       162 ~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~  241 (372)
T cd07853         162 TQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHIL  241 (372)
T ss_pred             CCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHH
Confidence            1236899999999998854 78999999999999999999999987655433322211                      


Q ss_pred             -ccccC-------CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          624 -QQLRF-------PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       624 -~~~~~-------p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                       .....       ......+.++.+||.+||..||++||+    +.++++||||++..+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t----~~e~l~hp~~~~~~~~  297 (372)
T cd07853         242 RGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRIS----AADALAHPYLDEGRLR  297 (372)
T ss_pred             hCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcC----HHHHhcCHhhCCCcch
Confidence             01111       112345788999999999999999999    7999999999986543

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4.3e-43  Score=387.70  Aligned_cols=261  Identities=22%  Similarity=0.341  Sum_probs=210.5

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEEC--CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELS--STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~--~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      ...+|++++.||+|+||.||++...  .+++.||+|.+.+..        ...+|+++|+.++||||++++++|..+..+
T Consensus        90 ~~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~--------~~~~E~~il~~l~h~~iv~~~~~~~~~~~~  161 (392)
T PHA03207         90 VRMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGK--------TPGREIDILKTISHRAIINLIHAYRWKSTV  161 (392)
T ss_pred             ccCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccccc--------cHHHHHHHHHhcCCCCccceeeeEeeCCEE
Confidence            3468999999999999999999764  356789999886532        245799999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+ +++|..++...  ..+++..++.|+.||+.||.|||++|||||||||+|||++.++.+||+|||++......
T Consensus       162 ~lv~e~~-~~~l~~~l~~~--~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~  238 (392)
T PHA03207        162 CMVMPKY-KCDLFTYVDRS--GPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAH  238 (392)
T ss_pred             EEEehhc-CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccccCcc
Confidence            9999999 56888777443  57999999999999999999999999999999999999999999999999998532100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      .                                                                          .....
T Consensus       239 ~--------------------------------------------------------------------------~~~~~  244 (392)
T PHA03207        239 P--------------------------------------------------------------------------DTPQC  244 (392)
T ss_pred             c--------------------------------------------------------------------------ccccc
Confidence            0                                                                          00011


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc---ceeeeec--------------------
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA---TLFNVVG--------------------  623 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~---~l~~i~~--------------------  623 (730)
                      ..++||+.|+|||++.+..|+.++|||||||+||||++|+.||.+.....   .+..++.                    
T Consensus       245 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  324 (392)
T PHA03207        245 YGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKH  324 (392)
T ss_pred             cccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHH
Confidence            23579999999999999999999999999999999999999998754321   1111110                    


Q ss_pred             ---------ccccCCC---CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchhc
Q 004790          624 ---------QQLRFPD---SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       624 ---------~~~~~p~---~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~r  678 (730)
                               ..+..+.   ....+.++++||++||..||++||+    +.++|+||||....|..++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rps----a~e~l~~p~f~~~~~~~~~  387 (392)
T PHA03207        325 FKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPS----AQDILSLPLFTKEPINLLN  387 (392)
T ss_pred             HHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCC----HHHHhhCchhhccchhhhc
Confidence                     0001110   0234678899999999999999999    7999999999998888765

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=1.2e-43  Score=377.47  Aligned_cols=260  Identities=27%  Similarity=0.410  Sum_probs=209.5

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      .+++|.+++.||+|+||.||+|+++.+++.||+|+++.....  .....+.+|+++++.++||||+++++++..++.+|+
T Consensus         4 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   81 (309)
T cd07872           4 KMETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEE--GAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTL   81 (309)
T ss_pred             CCCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccC--CcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEE
Confidence            357899999999999999999999999999999998754322  222346789999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||++ ++|..++... +..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......  
T Consensus        82 v~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~--  157 (309)
T cd07872          82 VFEYLD-KDLKQYMDDC-GNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVP--  157 (309)
T ss_pred             EEeCCC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccceecCCC--
Confidence            999996 4777766543 345889999999999999999999999999999999999999999999999998431000  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                ......
T Consensus       158 --------------------------------------------------------------------------~~~~~~  163 (309)
T cd07872         158 --------------------------------------------------------------------------TKTYSN  163 (309)
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      000012


Q ss_pred             cccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-------------------ccccC
Q 004790          569 FVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-------------------QQLRF  628 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-------------------~~~~~  628 (730)
                      .++|+.|+|||++.+. .++.++|||||||++|||++|+.||.+.+..+.+..+..                   ....+
T Consensus       164 ~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
T cd07872         164 EVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNF  243 (309)
T ss_pred             ccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhc
Confidence            3678999999999764 578999999999999999999999987654333222110                   00111


Q ss_pred             C---------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          629 P---------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       629 p---------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      +         ..+.++.++++||++||..||.+|+|    +.|+++||||+.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t----~~e~l~h~~~~~~  292 (309)
T cd07872         244 PKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRIS----AEEAMKHAYFRSL  292 (309)
T ss_pred             CccCCCchhhhccCCCHHHHHHHHHhccCChhhCCC----HHHHhcChhhhhc
Confidence            1         11346789999999999999999999    7999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2e-43  Score=381.57  Aligned_cols=255  Identities=27%  Similarity=0.420  Sum_probs=207.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc------
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD------  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~------  403 (730)
                      .++|++++.||.|+||+||+|.+..+++.||+|++.+... .......+.+|+++|+.++||||++++++|...      
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07878          14 PERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQ-SLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENF   92 (343)
T ss_pred             hhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhh-hhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccccc
Confidence            4689999999999999999999999999999999976432 223445677899999999999999999988643      


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ..+|++||++ |++|..++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus        93 ~~~~~~~~~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~  168 (343)
T cd07878          93 NEVYLVTNLM-GADLNNIVKC---QKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQA  168 (343)
T ss_pred             CcEEEEeecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCccceec
Confidence            4579999998 8899887654   36999999999999999999999999999999999999999999999999998431


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                              
T Consensus       169 ~~------------------------------------------------------------------------------  170 (343)
T cd07878         169 DD------------------------------------------------------------------------------  170 (343)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc------------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ------------------  624 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~------------------  624 (730)
                       ....++||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+..+.+..+...                  
T Consensus       171 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (343)
T cd07878         171 -EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHAR  249 (343)
T ss_pred             -CcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHH
Confidence             0113478999999999987 46899999999999999999999999875433322221100                  


Q ss_pred             -----cccCCC------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          625 -----QLRFPD------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       625 -----~~~~p~------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                           ....+.      ....+..+.+||.+||..||.+||+    +.++++||||...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s----~~ell~hp~~~~~  304 (343)
T cd07878         250 KYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRIS----ASEALAHPYFSQY  304 (343)
T ss_pred             HHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCC----HHHHhcCcchhcc
Confidence                 000010      1234567889999999999999999    7999999999864

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=2.6e-43  Score=379.57  Aligned_cols=254  Identities=20%  Similarity=0.305  Sum_probs=201.1

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEEC-----CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELS-----STRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHF  400 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~-----~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f  400 (730)
                      .+..++|++.+.||+|+||.||+|.+.     .++..||||++....  .......+.+|+.+|+.+ +||||+++++++
T Consensus         3 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~   80 (338)
T cd05102           3 EFPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGA--TASEHKALMSELKILIHIGNHLNVVNLLGAC   80 (338)
T ss_pred             ccchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheecccccc--chHHHHHHHHHHHHHHHhccCcceeeEEeEe
Confidence            355678999999999999999999853     345689999986532  223345688999999999 899999999987


Q ss_pred             cc-cceeeEEeeecCCCCccccccccC-----------------------------------------------------
Q 004790          401 ET-DRFSCLVMEYCPGGDLHTLRQRQP-----------------------------------------------------  426 (730)
Q Consensus       401 ~~-~~~l~LVmEy~~GGsL~~ll~~~~-----------------------------------------------------  426 (730)
                      .. +..+|+||||++||+|.+++....                                                     
T Consensus        81 ~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
T cd05102          81 TKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPP  160 (338)
T ss_pred             cCCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccc
Confidence            65 456899999999999988776431                                                     


Q ss_pred             -------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCC
Q 004790          427 -------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP  499 (730)
Q Consensus       427 -------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~  499 (730)
                             ...+++..+..|+.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......           
T Consensus       161 ~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~-----------  229 (338)
T cd05102         161 QETDDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPD-----------  229 (338)
T ss_pred             hhccccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcc-----------
Confidence                   12477888899999999999999999999999999999999999999999999853210000           


Q ss_pred             CCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChh
Q 004790          500 SRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPE  579 (730)
Q Consensus       500 ~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APE  579 (730)
                                                                                     .....+..+|+.|+|||
T Consensus       230 ---------------------------------------------------------------~~~~~~~~~~~~y~aPE  246 (338)
T cd05102         230 ---------------------------------------------------------------YVRKGSARLPLKWMAPE  246 (338)
T ss_pred             ---------------------------------------------------------------hhcccCCCCCccccCcH
Confidence                                                                           00011235678899999


Q ss_pred             hhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          580 IIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       580 vl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      ++.+..++.++|||||||+||||++ |..||.+......+...+............+.++++||.+||..||.+||++
T Consensus       247 ~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~  324 (338)
T cd05102         247 SIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTF  324 (338)
T ss_pred             HhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCH
Confidence            9999999999999999999999996 9999988654443333333222233334678899999999999999999995

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.5e-43  Score=360.89  Aligned_cols=260  Identities=28%  Similarity=0.432  Sum_probs=217.6

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh--hHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA--SRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~--~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ++|++.+.||+|++|.||++.+..+++.||||++......  .......+.+|+++++.++||||++++++++++..+|+
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4699999999999999999999999999999998754322  22345678899999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||++|++|.+++...  ..+++..++.++.||+.||.|||+.||+||||||+|||++.++.++|+|||++........
T Consensus        82 v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~  159 (263)
T cd06625          82 FMEYMPGGSVKDQLKAY--GALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICS  159 (263)
T ss_pred             EEEECCCCcHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecccccc
Confidence            99999999999887764  4689999999999999999999999999999999999999999999999999853210000


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                               .......
T Consensus       160 -------------------------------------------------------------------------~~~~~~~  166 (263)
T cd06625         160 -------------------------------------------------------------------------SGTGMKS  166 (263)
T ss_pred             -------------------------------------------------------------------------ccccccC
Confidence                                                                                     0000013


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      ..|+..|+|||++.+..++.++|||||||++|||++|+.||..........++.............+..+.+||++||.+
T Consensus       167 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  246 (263)
T cd06625         167 VTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVE  246 (263)
T ss_pred             CCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHHHHHHhccCCCCCCCccCCHHHHHHHHHHhhc
Confidence            46889999999999999999999999999999999999999876555444444433333333346788999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF  669 (730)
                      +|++||+    +.++++||||
T Consensus       247 ~p~~Rpt----~~~ll~~~~~  263 (263)
T cd06625         247 NAKKRPS----AEELLRHFFV  263 (263)
T ss_pred             CcccCCC----HHHHhhCCCC
Confidence            9999999    7999999998

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=2.8e-43  Score=382.52  Aligned_cols=256  Identities=26%  Similarity=0.422  Sum_probs=204.9

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc-----
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD-----  403 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~-----  403 (730)
                      ..++|++++.||+|+||.||++.+..+++.||||++.+... .......+.+|+.+++.++||||++++++|...     
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCccc-ChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence            35789999999999999999999999999999999975432 234456678899999999999999999988643     


Q ss_pred             -ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          404 -RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       404 -~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                       ..+|+||||+++ +|...+..    .+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.
T Consensus        94 ~~~~~lv~e~~~~-~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~  168 (355)
T cd07874          94 FQDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  168 (355)
T ss_pred             cceeEEEhhhhcc-cHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCccccc
Confidence             357999999955 56555543    488899999999999999999999999999999999999999999999999843


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ...                                                                             
T Consensus       169 ~~~-----------------------------------------------------------------------------  171 (355)
T cd07874         169 AGT-----------------------------------------------------------------------------  171 (355)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-------------------
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-------------------  623 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-------------------  623 (730)
                      .......+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+....+..++.                   
T Consensus       172 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (355)
T cd07874         172 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRN  251 (355)
T ss_pred             ccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHH
Confidence            0001134789999999999999999999999999999999999999987643222211110                   


Q ss_pred             ---cc-----cc---------CC----CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          624 ---QQ-----LR---------FP----DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       624 ---~~-----~~---------~p----~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                         ..     ..         ++    .....+.++++||.+||..||++||+    +.|+++||||..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps----~~ell~hp~~~~  316 (355)
T cd07874         252 YVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRIS----VDEALQHPYINV  316 (355)
T ss_pred             HHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCC----HHHHhcCcchhc
Confidence               00     00         00    01123567899999999999999999    799999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=1.8e-42  Score=407.88  Aligned_cols=152  Identities=38%  Similarity=0.638  Sum_probs=140.9

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +++|+++++||+|+||.||+|++..+++.||||++++...........+.+|+.+++.++||||+++++++....++|||
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            47899999999999999999999999999999999876665566667889999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      |||+.|++|..++...  +.+++..++.|+.||+.||+|||.+|||||||||+||||+.++++||+|||+++..
T Consensus        83 mEy~~g~~L~~li~~~--~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~  154 (669)
T cd05610          83 MEYLIGGDVKSLLHIY--GYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVT  154 (669)
T ss_pred             EeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCccc
Confidence            9999999999988764  56899999999999999999999999999999999999999999999999999743

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=8.1e-43  Score=366.61  Aligned_cols=260  Identities=35%  Similarity=0.630  Sum_probs=206.3

Q ss_pred             EEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHh---cCCCCCccccccccccceeeEEeeecC
Q 004790          338 RLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL---LDHPFLPTLYTHFETDRFSCLVMEYCP  414 (730)
Q Consensus       338 ~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~---L~HPnIV~L~~~f~~~~~l~LVmEy~~  414 (730)
                      .||+|+||.||++.+..+++.||+|++.+.............+|..+++.   .+||||+.++++|..++..|+||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            38999999999999999999999999976544332222334445544444   479999999999999999999999999


Q ss_pred             CCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCC
Q 004790          415 GGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS  494 (730)
Q Consensus       415 GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~  494 (730)
                      |++|..++..+  +.+++..++.++.||+.||+|||++||+||||||+|||++.++.++|+|||++.....         
T Consensus        81 ~~~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~---------  149 (279)
T cd05633          81 GGDLHYHLSQH--GVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK---------  149 (279)
T ss_pred             CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceeccc---------
Confidence            99998877654  5699999999999999999999999999999999999999999999999998732100         


Q ss_pred             CCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcc
Q 004790          495 LDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHE  574 (730)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~  574 (730)
                                                                                           .......||+.
T Consensus       150 ---------------------------------------------------------------------~~~~~~~~~~~  160 (279)
T cd05633         150 ---------------------------------------------------------------------KKPHASVGTHG  160 (279)
T ss_pred             ---------------------------------------------------------------------cCccCcCCCcC
Confidence                                                                                 00011368999


Q ss_pred             cCChhhhc-cCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc--ceeeeecccccCCCCCCCChhHHHHHHhhhcCCCC
Q 004790          575 YLAPEIIK-GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA--TLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQ  651 (730)
Q Consensus       575 Y~APEvl~-g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~--~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~  651 (730)
                      |+|||.+. +..++.++|+|||||++|||++|..||.......  .+... ...........++.++++||.+||..||.
T Consensus       161 y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~  239 (279)
T cd05633         161 YMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRM-TLTVNVELPDSFSPELKSLLEGLLQRDVS  239 (279)
T ss_pred             ccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHH-hhcCCcCCccccCHHHHHHHHHHhcCCHH
Confidence            99999987 4568999999999999999999999997643221  11111 11111122345788999999999999999


Q ss_pred             CcCCc-hhcHHHHHcCCCCCCCCcchhc
Q 004790          652 HRLGV-KRGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       652 ~R~t~-~~~a~elL~HPfF~~v~w~~~r  678 (730)
                      +|++. ...++++++||||++++|..+.
T Consensus       240 ~R~~~~~~~~~~~~~h~~~~~~~~~~~~  267 (279)
T cd05633         240 KRLGCLGRGAQEVKEHVFFKGIDWQQVY  267 (279)
T ss_pred             HhcCCCCCCHHHHHhCccccCCCHhHHh
Confidence            99953 2348999999999999998764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-42  Score=384.53  Aligned_cols=259  Identities=22%  Similarity=0.348  Sum_probs=215.1

Q ss_pred             cCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          324 RDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       324 ~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      .++.+..+++.++.+||+|.||+||+|+|.++   ||||+++...... ++++.++.|+..|+.-+|.||+-+.+++...
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whGd---VAVK~Lnv~~pt~-~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p  460 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWHGD---VAVKLLNVDDPTP-EQLQAFKNEVAVLKKTRHENILLFMGACMNP  460 (678)
T ss_pred             cccccCHHHhhccceeccccccceeecccccc---eEEEEEecCCCCH-HHHHHHHHHHHHHhhcchhhheeeehhhcCC
Confidence            56778889999999999999999999999875   9999998776655 5889999999999999999999999999988


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      .. .||+.+|+|-+|+.+++... ..|.....+.|++||+.|+.|||.++|||||||..||+|.++++|||+||||+.--
T Consensus       461 ~~-AIiTqwCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk  538 (678)
T KOG0193|consen  461 PL-AIITQWCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVK  538 (678)
T ss_pred             ce-eeeehhccCchhhhhccchh-hhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccceeee
Confidence            87 89999999999999988764 67999999999999999999999999999999999999999999999999998320


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                          +             +..++...                                                      
T Consensus       539 ----~-------------~w~g~~q~------------------------------------------------------  547 (678)
T KOG0193|consen  539 ----T-------------RWSGEQQL------------------------------------------------------  547 (678)
T ss_pred             ----e-------------eecccccc------------------------------------------------------
Confidence                0             00011110                                                      


Q ss_pred             ccccccccCcccCChhhhccC---CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCC----CCCCh
Q 004790          564 ARSMSFVGTHEYLAPEIIKGE---GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS----PATSY  636 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~---~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~----~~~s~  636 (730)
                         ....|...|||||+++..   +|++.+|||||||++|||++|..||.. ++.+++.-.++..+-.|+.    ..++.
T Consensus       548 ---~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi-~~~dqIifmVGrG~l~pd~s~~~s~~pk  623 (678)
T KOG0193|consen  548 ---EQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSI-QNRDQIIFMVGRGYLMPDLSKIRSNCPK  623 (678)
T ss_pred             ---CCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCC-CChhheEEEecccccCccchhhhccCHH
Confidence               112578899999999754   589999999999999999999999994 4555554445544433432    45677


Q ss_pred             hHHHHHHhhhcCCCCCcCCchhcHHHH
Q 004790          637 ASRDLIRGLLVKEPQHRLGVKRGATEI  663 (730)
Q Consensus       637 ~~~dLI~~lL~~DP~~R~t~~~~a~el  663 (730)
                      ++++|+..||.+++++||.+.+...-|
T Consensus       624 ~mk~Ll~~C~~~~~~eRP~F~~il~~l  650 (678)
T KOG0193|consen  624 AMKRLLSDCWKFDREERPLFPQLLSKL  650 (678)
T ss_pred             HHHHHHHHHHhcCcccCccHHHHHHHH
Confidence            999999999999999999975444433

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=5.2e-43  Score=397.40  Aligned_cols=260  Identities=27%  Similarity=0.398  Sum_probs=217.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCC-CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSST-RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t-~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      ..|.+.+.||+|+||.||+|....+ +..||+|.+....   ......+++|+.+|+.++||||++++++|+.++.+|||
T Consensus        67 ~~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~---~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv  143 (478)
T PTZ00267         67 HMYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLND---ERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLI  143 (478)
T ss_pred             eeEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCC---HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEE
Confidence            4599999999999999999998877 7889999775432   23445678899999999999999999999999999999


Q ss_pred             eeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          410 MEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      |||++||+|..++...  ....+++..+..++.||+.||.|||++||+||||||+||||+.++.+||+|||+++......
T Consensus       144 ~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~  223 (478)
T PTZ00267        144 MEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSV  223 (478)
T ss_pred             EECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCcc
Confidence            9999999998866432  23468999999999999999999999999999999999999999999999999985421000


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                ......
T Consensus       224 --------------------------------------------------------------------------~~~~~~  229 (478)
T PTZ00267        224 --------------------------------------------------------------------------SLDVAS  229 (478)
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      000112


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +++||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+..+..+... +....++.++++||.+||.
T Consensus       230 ~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~li~~~L~  308 (478)
T PTZ00267        230 SFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYD-PFPCPVSSGMKALLDPLLS  308 (478)
T ss_pred             ccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCC-CCCccCCHHHHHHHHHHhc
Confidence            468999999999999999999999999999999999999999887665555555444332 2234578899999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      +||++||+    +++++.|+|++.+
T Consensus       309 ~dP~~Rps----~~~~l~~~~~~~~  329 (478)
T PTZ00267        309 KNPALRPT----TQQLLHTEFLKYV  329 (478)
T ss_pred             cChhhCcC----HHHHHhCHHHHHH
Confidence            99999999    7899999999754

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=1e-42  Score=359.74  Aligned_cols=258  Identities=38%  Similarity=0.719  Sum_probs=217.5

Q ss_pred             EccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCc
Q 004790          339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL  418 (730)
Q Consensus       339 LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL  418 (730)
                      ||.|+||.||++++..+++.||+|++.+.........+.+.+|+.+++.++||||+++++.+.++..+|+||||+++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            79999999999999999999999999876655555567789999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCC
Q 004790          419 HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSD  498 (730)
Q Consensus       419 ~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~  498 (730)
                      .+++.+.  ..+++..++.++.||+.||.|||++|++|+||||+||+++.++.++|+|||++......            
T Consensus        81 ~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~------------  146 (262)
T cd05572          81 WTILRDR--GLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSG------------  146 (262)
T ss_pred             HHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcc------------
Confidence            9988765  46899999999999999999999999999999999999999999999999988432100            


Q ss_pred             CCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCCh
Q 004790          499 PSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAP  578 (730)
Q Consensus       499 ~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~AP  578 (730)
                                                                                       ......+|++.|++|
T Consensus       147 -----------------------------------------------------------------~~~~~~~~~~~~~~P  161 (262)
T cd05572         147 -----------------------------------------------------------------QKTWTFCGTPEYVAP  161 (262)
T ss_pred             -----------------------------------------------------------------cccccccCCcCccCh
Confidence                                                                             001124688999999


Q ss_pred             hhhccCCCCCcceeechhHHHHHHhhCCCCCCCCC--CccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          579 EIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG--NRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       579 Evl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~--~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      |.+.+..++.++|+|||||++|+|++|..||....  ....+.++..+..........+.++++||.+||..||++|++.
T Consensus       162 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~  241 (262)
T cd05572         162 EIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGN  241 (262)
T ss_pred             hHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCChhhCcCC
Confidence            99998889999999999999999999999998765  3333333442222222223458899999999999999999993


Q ss_pred             -hhcHHHHHcCCCCCCCCcc
Q 004790          657 -KRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       657 -~~~a~elL~HPfF~~v~w~  675 (730)
                       +..++|+++||||++++|.
T Consensus       242 ~~~~~~~l~~~~~~~~~~~~  261 (262)
T cd05572         242 LKGGIKDIKKHKWFNGFDWE  261 (262)
T ss_pred             cccCHHHHhcChhhhCCCCC
Confidence             3457999999999999985

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=6.1e-43  Score=375.72  Aligned_cols=265  Identities=24%  Similarity=0.374  Sum_probs=207.4

Q ss_pred             EEeEEccC--CcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeee
Q 004790          335 LLKRLGCG--DIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEY  412 (730)
Q Consensus       335 il~~LG~G--~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy  412 (730)
                      ++++||+|  +|++||+++++.+++.||||.++..... ......+++|+++++.++||||++++++|.+++.+|+||||
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~   80 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACT-NEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSF   80 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhcc-HHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEec
Confidence            56789999  7899999999999999999999765432 34456788999999999999999999999999999999999


Q ss_pred             cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccccc
Q 004790          413 CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT  492 (730)
Q Consensus       413 ~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~  492 (730)
                      +++|+|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++.++.++|+||+.+......      
T Consensus        81 ~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~------  154 (327)
T cd08227          81 MAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINH------  154 (327)
T ss_pred             cCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhccccc------
Confidence            99999999887654456899999999999999999999999999999999999999999999999865321000      


Q ss_pred             CCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccC
Q 004790          493 SSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT  572 (730)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT  572 (730)
                                  +...                              ..                     ........+++
T Consensus       155 ------------~~~~------------------------------~~---------------------~~~~~~~~~~~  171 (327)
T cd08227         155 ------------GQRL------------------------------RV---------------------VHDFPKYSVKV  171 (327)
T ss_pred             ------------cccc------------------------------cc---------------------cccccccccce
Confidence                        0000                              00                     00001123578


Q ss_pred             cccCChhhhcc--CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc------------------------
Q 004790          573 HEYLAPEIIKG--EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL------------------------  626 (730)
Q Consensus       573 ~~Y~APEvl~g--~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~------------------------  626 (730)
                      ..|+|||++.+  ..++.++|||||||++|||++|+.||........+........                        
T Consensus       172 ~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (327)
T cd08227         172 LPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGAN  251 (327)
T ss_pred             ecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCc
Confidence            88999999986  4589999999999999999999999976432221111110000                        


Q ss_pred             --------------------cCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          627 --------------------RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       627 --------------------~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                                          ..+.....+.++++||.+||.+||++|||    ++++++||||+.+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt----~~ell~~p~f~~~~  314 (327)
T cd08227         252 SGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPS----ASTLLNHSFFKQIK  314 (327)
T ss_pred             CCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCC----HHHHhcChhhhhcc
Confidence                                00111234678999999999999999999    79999999998754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=1.3e-42  Score=370.19  Aligned_cols=251  Identities=25%  Similarity=0.381  Sum_probs=191.2

Q ss_pred             EeEEccCCcEEEEEEEEC--CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc--ccceeeEEee
Q 004790          336 LKRLGCGDIGSVYLSELS--STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE--TDRFSCLVME  411 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~--~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~--~~~~l~LVmE  411 (730)
                      .++||+|+||+||+|+++  .+++.||+|.+.....     ...+.+|+++|+.++||||++++++|.  .+..+|+|||
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e   80 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI-----SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFD   80 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC-----cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEe
Confidence            468999999999999976  4678899999875432     123578999999999999999999885  4567899999


Q ss_pred             ecCCCCcccccccc-------CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe----cCCCceEEeccccc
Q 004790          412 YCPGGDLHTLRQRQ-------PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV----RDDGHIMLSDFDLS  480 (730)
Q Consensus       412 y~~GGsL~~ll~~~-------~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl----~~~g~vKL~DFGlA  480 (730)
                      |+ +++|..++...       ....+++..++.++.||+.||.|||++||+||||||+|||+    +.++.+||+|||++
T Consensus        81 ~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a  159 (317)
T cd07868          81 YA-EHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFA  159 (317)
T ss_pred             cc-CCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCce
Confidence            99 56777665422       12358999999999999999999999999999999999999    45689999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +.......                                                                        
T Consensus       160 ~~~~~~~~------------------------------------------------------------------------  167 (317)
T cd07868         160 RLFNSPLK------------------------------------------------------------------------  167 (317)
T ss_pred             eccCCCCc------------------------------------------------------------------------
Confidence            53210000                                                                        


Q ss_pred             cccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccc---------eeeee---ccc--
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT---------LFNVV---GQQ--  625 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~---------l~~i~---~~~--  625 (730)
                       ........+||+.|+|||++.+. .++.++|||||||++|||++|++||.+......         +.+++   ...  
T Consensus       168 -~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (317)
T cd07868         168 -PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPAD  246 (317)
T ss_pred             -cccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCCh
Confidence             00011235789999999999875 489999999999999999999999976432110         00000   000  


Q ss_pred             ------ccCC-------------------------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          626 ------LRFP-------------------------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       626 ------~~~p-------------------------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                            ..++                         .....+.++.|||++||++||.+|+|    ++|+|+||||
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t----~~e~l~hp~f  317 (317)
T cd07868         247 KDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRIT----SEQAMQDPYF  317 (317)
T ss_pred             HHhHHHhhccchhhhhhhhhccccCcccccchHHhcCCCCChHHHHHHHHHhccCcccCCC----HHHHhcCCCC
Confidence                  0000                         00123557889999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=1.4e-42  Score=356.09  Aligned_cols=265  Identities=40%  Similarity=0.741  Sum_probs=222.3

Q ss_pred             EccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCc
Q 004790          339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL  418 (730)
Q Consensus       339 LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL  418 (730)
                      ||.|+||.||++++..+++.||+|++.+...........+.+|+++++.++||||+++++.+..+..+|+||||++|++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            68999999999999999999999999877665556677889999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCC
Q 004790          419 HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSD  498 (730)
Q Consensus       419 ~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~  498 (730)
                      ..++.+.  ..+++..+..++.||+.||.|||++||+||||+|+||+++.++.++|+|||++..........        
T Consensus        81 ~~~l~~~--~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~--------  150 (265)
T cd05579          81 ASLLENV--GSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQIN--------  150 (265)
T ss_pred             HHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccc--------
Confidence            9988765  378999999999999999999999999999999999999999999999999984321000000        


Q ss_pred             CCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCCh
Q 004790          499 PSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAP  578 (730)
Q Consensus       499 ~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~AP  578 (730)
                                                              .                    ...........++..|+||
T Consensus       151 ----------------------------------------~--------------------~~~~~~~~~~~~~~~~~~P  170 (265)
T cd05579         151 ----------------------------------------L--------------------NDDEKEDKRIVGTPDYIAP  170 (265)
T ss_pred             ----------------------------------------c--------------------ccccccccCcccCccccCH
Confidence                                                    0                    0000011234688999999


Q ss_pred             hhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchh
Q 004790          579 EIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKR  658 (730)
Q Consensus       579 Evl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~  658 (730)
                      |.+.+..++.++|+|||||++|+|++|..||........+..+..+...++.....+..+.+||++||..+|.+||++ .
T Consensus       171 e~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~-~  249 (265)
T cd05579         171 EVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAIDLISKLLVPDPEKRLGA-K  249 (265)
T ss_pred             HHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCcCCCccccCCHHHHHHHHHHhcCCHhhcCCC-c
Confidence            999998899999999999999999999999987766555555555555555544458999999999999999999994 2


Q ss_pred             cHHHHHcCCCCCCCCc
Q 004790          659 GATEIKQHPFFEGVNW  674 (730)
Q Consensus       659 ~a~elL~HPfF~~v~w  674 (730)
                      .+.++++||||++++|
T Consensus       250 ~~~~~l~~~~~~~~~~  265 (265)
T cd05579         250 SIEEIKNHPFFKGIDW  265 (265)
T ss_pred             cHHHHhcCccccCCCC
Confidence            2489999999999998

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=6.1e-43  Score=358.83  Aligned_cols=254  Identities=37%  Similarity=0.642  Sum_probs=210.1

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeee
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEY  412 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy  412 (730)
                      |++++.||+|+||+||++++..+++.||+|++......... .....+|+.+++.++||||+++++++.++..+|+||||
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~-~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~   79 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEE-REENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEY   79 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHH-HHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccc-cchhhhhhhccccccccccccccccccccccccccccc
Confidence            88999999999999999999999999999999887654433 33345699999999999999999999999999999999


Q ss_pred             cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccccc
Q 004790          413 CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT  492 (730)
Q Consensus       413 ~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~  492 (730)
                      +.+++|..++...  ..+++..+..++.||+.||+|||++||+||||||+|||++.++.++|+|||++.....       
T Consensus        80 ~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~-------  150 (260)
T PF00069_consen   80 CPGGSLQDYLQKN--KPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSE-------  150 (260)
T ss_dssp             ETTEBHHHHHHHH--SSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEESTS-------
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence            9999999988733  5789999999999999999999999999999999999999999999999999843100       


Q ss_pred             CCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccC
Q 004790          493 SSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT  572 (730)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT  572 (730)
                                                                                           .........+|
T Consensus       151 ---------------------------------------------------------------------~~~~~~~~~~~  161 (260)
T PF00069_consen  151 ---------------------------------------------------------------------NNENFNPFVGT  161 (260)
T ss_dssp             ---------------------------------------------------------------------TTSEBSSSSSS
T ss_pred             ---------------------------------------------------------------------ccccccccccc
Confidence                                                                                 00011234789


Q ss_pred             cccCChhhhc-cCCCCCcceeechhHHHHHHhhCCCCCCCCCCc---cceeeeecccccCCC--CCCCChhHHHHHHhhh
Q 004790          573 HEYLAPEIIK-GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR---ATLFNVVGQQLRFPD--SPATSYASRDLIRGLL  646 (730)
Q Consensus       573 ~~Y~APEvl~-g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~---~~l~~i~~~~~~~p~--~~~~s~~~~dLI~~lL  646 (730)
                      ..|+|||++. +..++.++||||||+++|+|++|..||......   ..+.+..........  ......++.+||.+||
T Consensus       162 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  241 (260)
T PF00069_consen  162 PEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKML  241 (260)
T ss_dssp             GGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHc
Confidence            9999999998 788899999999999999999999999876221   222222221111111  1122479999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      ..||++||+    +.++++||||
T Consensus       242 ~~~p~~R~~----~~~l~~~~~~  260 (260)
T PF00069_consen  242 SKDPEQRPS----AEELLKHPWF  260 (260)
T ss_dssp             SSSGGGSTT----HHHHHTSGGG
T ss_pred             cCChhHCcC----HHHHhcCCCC
Confidence            999999999    7999999998

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=9.9e-43  Score=397.06  Aligned_cols=263  Identities=26%  Similarity=0.414  Sum_probs=219.0

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc----
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR----  404 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~----  404 (730)
                      ..++|++.+.||+|+||+||+|++..+++.||||+++..... ......+++|+.+|..++|+||++++..|....    
T Consensus        30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~-~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMS-EADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCC-HHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            347899999999999999999999999999999999766443 345567889999999999999999998775322    


Q ss_pred             ----eeeEEeeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccc
Q 004790          405 ----FSCLVMEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFD  478 (730)
Q Consensus       405 ----~l~LVmEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFG  478 (730)
                          .+++||||+++|+|.+++...  ....+++..++.++.||+.||.|||++||+||||||+||||+.++++||+|||
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DFG  188 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFG  188 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEecc
Confidence                478999999999999877542  23578999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccc
Q 004790          479 LSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELV  558 (730)
Q Consensus       479 lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (730)
                      +++.+....                                                                       
T Consensus       189 ls~~~~~~~-----------------------------------------------------------------------  197 (496)
T PTZ00283        189 FSKMYAATV-----------------------------------------------------------------------  197 (496)
T ss_pred             cCeeccccc-----------------------------------------------------------------------
Confidence            985421000                                                                       


Q ss_pred             cccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhH
Q 004790          559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYAS  638 (730)
Q Consensus       559 ~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~  638 (730)
                         ......+++||+.|+|||++.+..++.++|||||||+||||++|+.||.+.+....+..+..+... +....++.++
T Consensus       198 ---~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~l  273 (496)
T PTZ00283        198 ---SDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYD-PLPPSISPEM  273 (496)
T ss_pred             ---cccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCC-CCCCCCCHHH
Confidence               000112458999999999999999999999999999999999999999886655544444443322 3345678999


Q ss_pred             HHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          639 RDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       639 ~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ++||.+||..||.+||+    +.++++|||++.
T Consensus       274 ~~li~~~L~~dP~~RPs----~~ell~~p~~~~  302 (496)
T PTZ00283        274 QEIVTALLSSDPKRRPS----SSKLLNMPICKL  302 (496)
T ss_pred             HHHHHHHcccChhhCcC----HHHHHhCHHHHH
Confidence            99999999999999999    689999999875

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=6.7e-43  Score=388.09  Aligned_cols=257  Identities=30%  Similarity=0.489  Sum_probs=232.1

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ....|.+++.||+|.|++|.++++..++..||||+++|....... +..+.+|++||..|+|||||+||.+.++...+|+
T Consensus        54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~-~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lyl  132 (596)
T KOG0586|consen   54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSK-RQKLGREVDIMKSLNHPNIVKLFSVIETEATLYL  132 (596)
T ss_pred             cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHH-HHHHHHHHHHHHhcCCcceeeeeeeeeecceeEE
Confidence            346799999999999999999999999999999999998776544 4458999999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||+.+|++++++.++  +++.+..++.++.|++.|++|||+++|||||||.+||||+.+..+||+|||++..+...  
T Consensus       133 V~eya~~ge~~~yl~~~--gr~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~--  208 (596)
T KOG0586|consen  133 VMEYASGGELFDYLVKH--GRMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYG--  208 (596)
T ss_pred             EEEeccCchhHHHHHhc--ccchhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccceeeccc--
Confidence            99999999999999887  67888999999999999999999999999999999999999999999999998543210  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                 ....+
T Consensus       209 ---------------------------------------------------------------------------~~lqt  213 (596)
T KOG0586|consen  209 ---------------------------------------------------------------------------LMLQT  213 (596)
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       11236


Q ss_pred             cccCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          569 FVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +||++.|.|||++.|..| ++.+|+||+|++||-|+.|..||.|.+-...-.+++.+.+++|.  .++.++++||+++|.
T Consensus       214 ~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~gk~rIp~--~ms~dce~lLrk~lv  291 (596)
T KOG0586|consen  214 FCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRGKYRIPF--YMSCDCEDLLRKFLV  291 (596)
T ss_pred             cCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccccchheeeeecccc--eeechhHHHHHHhhc
Confidence            799999999999999998 88999999999999999999999998877777788888888886  468899999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      .+|.+|++    .+++..|.|...
T Consensus       292 l~Pskr~~----~dqim~~~W~n~  311 (596)
T KOG0586|consen  292 LNPSKRGP----CDQIMKDRWRND  311 (596)
T ss_pred             cCccccCC----HHHhhhhcccch
Confidence            99999999    699999999875

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=4.4e-42  Score=352.95  Aligned_cols=256  Identities=24%  Similarity=0.425  Sum_probs=214.1

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc-cceeeEEe
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET-DRFSCLVM  410 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~-~~~l~LVm  410 (730)
                      .|++++.||.|++|.||+++++.+++.||+|.+...... ......+.+|+++++.++||||+++++.+.. +..+|+||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~   79 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNAS-RRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVM   79 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcC-HHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEe
Confidence            489999999999999999999999999999999764432 2345567889999999999999999998864 55789999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+++++|.+++.......+++.+++.++.||+.||.|||++||+||||||+||+++.++.++|+|||++......    
T Consensus        80 e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~----  155 (257)
T cd08223          80 GFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQ----  155 (257)
T ss_pred             cccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEeccc----
Confidence            9999999998877655567899999999999999999999999999999999999999999999999998432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              ........
T Consensus       156 ------------------------------------------------------------------------~~~~~~~~  163 (257)
T cd08223         156 ------------------------------------------------------------------------CDMASTLI  163 (257)
T ss_pred             ------------------------------------------------------------------------CCcccccc
Confidence                                                                                    00011246


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      |++.|+|||++.+..++.++|+|||||++|+|++|+.||.+.+.......+..+... +.....+.++.+||.+||..||
T Consensus       164 ~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p  242 (257)
T cd08223         164 GTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLP-PMPKDYSPELGELIATMLSKRP  242 (257)
T ss_pred             CCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCC-CCccccCHHHHHHHHHHhccCc
Confidence            899999999999999999999999999999999999999876544444444333321 2234578899999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF  669 (730)
                      ++||+    +.++++||||
T Consensus       243 ~~Rp~----~~~~l~~~~~  257 (257)
T cd08223         243 EKRPS----VKSILRQPYI  257 (257)
T ss_pred             ccCCC----HHHHhcCCCC
Confidence            99999    7999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-44  Score=368.02  Aligned_cols=260  Identities=30%  Similarity=0.481  Sum_probs=218.0

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||+|+|+.|.-+....++..||||+++|..-   ....++.+|++++..+ .|+||++|+++|+++..+|||||-|.|
T Consensus        84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~g---HsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~G  160 (463)
T KOG0607|consen   84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPG---HSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRG  160 (463)
T ss_pred             HHhcCccceeeeeeeeeccchhhhhhhhhcCCc---hHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccC
Confidence            579999999999999999999999999988633   4456789999999998 799999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC---ceEEecccccccccCCCccccc
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG---HIMLSDFDLSLRCAVSPTLIKT  492 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g---~vKL~DFGlA~~~~~~~~~~~~  492 (730)
                      |.|...++++  +.|+|.+|..++++|+.||.|||.+||.||||||+|||...-.   -||||||+|...+.        
T Consensus       161 GplLshI~~~--~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k--------  230 (463)
T KOG0607|consen  161 GPLLSHIQKR--KHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIK--------  230 (463)
T ss_pred             chHHHHHHHh--hhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccccccc--------
Confidence            9999988876  7899999999999999999999999999999999999997654   48999999873211        


Q ss_pred             CCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccC
Q 004790          493 SSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT  572 (730)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT  572 (730)
                                       ....|+ |.                                           ..-.-.+.||+
T Consensus       231 -----------------~~~~~s-pa-------------------------------------------stP~L~tPvGS  249 (463)
T KOG0607|consen  231 -----------------LNNDCS-PA-------------------------------------------STPELLTPVGS  249 (463)
T ss_pred             -----------------cCCCCC-CC-------------------------------------------CCccccCcccc
Confidence                             001111 00                                           00112356999


Q ss_pred             cccCChhhhc-----cCCCCCcceeechhHHHHHHhhCCCCCCCCCC---------------ccceeeeecccccCCC--
Q 004790          573 HEYLAPEIIK-----GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN---------------RATLFNVVGQQLRFPD--  630 (730)
Q Consensus       573 ~~Y~APEvl~-----g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~---------------~~~l~~i~~~~~~~p~--  630 (730)
                      .+|||||++.     ..-|+.+.|.||||+|||-||.|.+||.|.-.               ...+..|..+.+.||+  
T Consensus       250 AEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkd  329 (463)
T KOG0607|consen  250 AEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKD  329 (463)
T ss_pred             hhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCChhh
Confidence            9999999973     23489999999999999999999999987521               1233446678888985  


Q ss_pred             CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       631 ~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      |..+|.+++|||+.+|.+|+.+|++    +.++++|||++.+.-
T Consensus       330 WahIS~eakdlisnLlvrda~~rls----a~~vlnhPw~~~~~~  369 (463)
T KOG0607|consen  330 WAHISSEAKDLISNLLVRDAKQRLS----AAQVLNHPWVQRCAP  369 (463)
T ss_pred             hHHhhHHHHHHHHHHHhccHHhhhh----hhhccCCccccccch
Confidence            5788999999999999999999999    799999999998643

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=5.3e-42  Score=351.65  Aligned_cols=256  Identities=26%  Similarity=0.430  Sum_probs=216.7

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|.+.+.||+|+||.||+|+++.+++.|++|.+...... ......+.+|+++++.++||||+++++++.+++.+|+|||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMN-RREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVME   79 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCC-HHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEE
Confidence            588999999999999999999999999999999765433 3445678899999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |++|++|..++....+..+++..+..++.||+.||.|||++||+||||||+||+++.+++++|+|||+++.....     
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~-----  154 (256)
T cd08529          80 YAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDN-----  154 (256)
T ss_pred             eCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCc-----
Confidence            999999999887765567999999999999999999999999999999999999999999999999987432100     


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                             ........|
T Consensus       155 -----------------------------------------------------------------------~~~~~~~~~  163 (256)
T cd08529         155 -----------------------------------------------------------------------TNFANTIVG  163 (256)
T ss_pred             -----------------------------------------------------------------------cchhhcccc
Confidence                                                                                   000112468


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQ  651 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~  651 (730)
                      ++.|+|||++.+..++.++|+|||||++|+|++|+.||...+.......+..+... +.....+..+.++|++||..+|+
T Consensus       164 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~p~  242 (256)
T cd08529         164 TPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGALILKIIRGVFP-PVSQMYSQQLAQLIDQCLTKDYR  242 (256)
T ss_pred             CccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCC-CCccccCHHHHHHHHHHccCCcc
Confidence            89999999999999999999999999999999999999876654444443333221 12225678999999999999999


Q ss_pred             CcCCchhcHHHHHcCCCC
Q 004790          652 HRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       652 ~R~t~~~~a~elL~HPfF  669 (730)
                      +||+    +.++++|||+
T Consensus       243 ~Rp~----~~~ll~~~~~  256 (256)
T cd08529         243 QRPD----TFQLLRNPSL  256 (256)
T ss_pred             cCcC----HHHHhhCCCC
Confidence            9999    7999999995

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=2.2e-42  Score=366.04  Aligned_cols=261  Identities=26%  Similarity=0.412  Sum_probs=209.4

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      .+++|++++.||.|+||.||+|+++.+++.||+|.+......  .....+.+|+.+++.++||||+++++++.++..+|+
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~l   81 (301)
T cd07873           4 KLETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEE--GAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTL   81 (301)
T ss_pred             cccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEeccccc--CchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEE
Confidence            457899999999999999999999999999999998654321  222346789999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||+. ++|..++... ...+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......  
T Consensus        82 v~e~~~-~~l~~~l~~~-~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~--  157 (301)
T cd07873          82 VFEYLD-KDLKQYLDDC-GNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIP--  157 (301)
T ss_pred             EEeccc-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCC--
Confidence            999996 5887776653 346889999999999999999999999999999999999999999999999998421000  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                ......
T Consensus       158 --------------------------------------------------------------------------~~~~~~  163 (301)
T cd07873         158 --------------------------------------------------------------------------TKTYSN  163 (301)
T ss_pred             --------------------------------------------------------------------------CCcccc
Confidence                                                                                      000012


Q ss_pred             cccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeee---------------c----ccccC
Q 004790          569 FVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV---------------G----QQLRF  628 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~---------------~----~~~~~  628 (730)
                      ..+++.|+|||++.+. .++.++|||||||++|||++|++||.+.+..+.+..+.               .    ....+
T Consensus       164 ~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (301)
T cd07873         164 EVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNY  243 (301)
T ss_pred             cceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhcccccccccc
Confidence            3578899999998765 47889999999999999999999998765322221110               0    01111


Q ss_pred             CC---------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          629 PD---------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       629 p~---------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      +.         ...++..+++||.+||..||.+|++    ++|+++||||+.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t----~~eil~h~~f~~~~  293 (301)
T cd07873         244 PKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRIS----AEEAMKHPYFHCLG  293 (301)
T ss_pred             CccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcC----HHHHhcCccccccc
Confidence            11         1356888999999999999999999    79999999998654

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=3.4e-42  Score=360.79  Aligned_cols=253  Identities=28%  Similarity=0.432  Sum_probs=208.2

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||.||+|++..+++.||+|++.+..  .......+.+|+++|+.++||||++++++|..+...++||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   78 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDI--TVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICT   78 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCC--ChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEE
Confidence            36899999999999999999999999999999987642  2234456889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+++++|..+      ..+++..+..++.||+.||.|||++||+|+||||+|||++.++.++|+|||++.....     
T Consensus        79 e~~~~~~l~~~------~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~-----  147 (279)
T cd06619          79 EFMDGGSLDVY------RKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVN-----  147 (279)
T ss_pred             ecCCCCChHHh------hcCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceeccc-----
Confidence            99999998653      2478889999999999999999999999999999999999999999999999843100     


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                               ......+
T Consensus       148 -------------------------------------------------------------------------~~~~~~~  154 (279)
T cd06619         148 -------------------------------------------------------------------------SIAKTYV  154 (279)
T ss_pred             -------------------------------------------------------------------------ccccCCC
Confidence                                                                                     0011247


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccce------ee-eecccccCCCCCCCChhHHHHHH
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL------FN-VVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l------~~-i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ||..|+|||++.+..++.++|+|||||++|+|++|+.||.........      .. +.............+.++++||.
T Consensus       155 ~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  234 (279)
T cd06619         155 GTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFIT  234 (279)
T ss_pred             CChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHH
Confidence            899999999999999999999999999999999999999753321111      01 11111111112346788999999


Q ss_pred             hhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          644 GLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       644 ~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      +||..||++||+    ++++++||||...+
T Consensus       235 ~~l~~~P~~Rp~----~~eil~~~~~~~~~  260 (279)
T cd06619         235 QCMRKQPKERPA----PENLMDHPFIVQYN  260 (279)
T ss_pred             HHhhCChhhCCC----HHHHhcCccccccc
Confidence            999999999999    69999999998764

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=1.5e-42  Score=359.98  Aligned_cols=255  Identities=29%  Similarity=0.423  Sum_probs=208.7

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccc------c
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFET------D  403 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~------~  403 (730)
                      +.|++.+.||+|+||.||+|++..+++.||+|++....    .....+.+|+.+++.+ +||||++++++|..      .
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (272)
T cd06637           6 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG----DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   81 (272)
T ss_pred             hhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC----ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence            56889999999999999999999999999999987543    1224567899999988 79999999999864      3


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ..+|+||||+.+++|..++.......+++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++...
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~  161 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL  161 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceec
Confidence            56899999999999999887655567899999999999999999999999999999999999999999999999998432


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                            ..
T Consensus       162 ~~----------------------------------------------------------------------------~~  165 (272)
T cd06637         162 DR----------------------------------------------------------------------------TV  165 (272)
T ss_pred             cc----------------------------------------------------------------------------cc
Confidence            10                                                                            00


Q ss_pred             ccccccccCcccCChhhhcc-----CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhH
Q 004790          564 ARSMSFVGTHEYLAPEIIKG-----EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYAS  638 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g-----~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~  638 (730)
                      .......|++.|+|||++.+     ..++.++|||||||++|||++|..||...........+............++.++
T Consensus       166 ~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (272)
T cd06637         166 GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKF  245 (272)
T ss_pred             ccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcCCCCCCCCCCcCHHH
Confidence            01123578999999999973     3578899999999999999999999976544333332222222222234567899


Q ss_pred             HHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          639 RDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       639 ~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      ++||.+||..||.+||+    +.+++.||||
T Consensus       246 ~~li~~~l~~~p~~Rpt----~~~il~~~~~  272 (272)
T cd06637         246 QSFIESCLVKNHSQRPT----TEQLMKHPFI  272 (272)
T ss_pred             HHHHHHHcCCChhhCCC----HHHHhhCCCC
Confidence            99999999999999999    7999999998

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-42  Score=356.88  Aligned_cols=256  Identities=39%  Similarity=0.723  Sum_probs=213.4

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHH-HhcCCCCCccccccccccceeeEEeeecCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL-~~L~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +.||.|+||.||+|.+..+++.||+|++.+...........+..|..++ ..++||||++++++|..+..+|+||||++|
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            5799999999999999999999999999876554444444455666554 455999999999999999999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      ++|..++...  ..+++..+..++.||+.||.|||+.||+||||+|+|||++.++.+||+|||++....           
T Consensus        82 ~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~-----------  148 (260)
T cd05611          82 GDCASLIKTL--GGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGL-----------  148 (260)
T ss_pred             CCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceecc-----------
Confidence            9999988764  468999999999999999999999999999999999999999999999999873210           


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                           ....+.|++.|
T Consensus       149 ---------------------------------------------------------------------~~~~~~~~~~y  159 (260)
T cd05611         149 ---------------------------------------------------------------------ENKKFVGTPDY  159 (260)
T ss_pred             ---------------------------------------------------------------------ccccCCCCcCc
Confidence                                                                                 00124688899


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHHHHHhhhcCCCCCc
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRDLIRGLLVKEPQHR  653 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~dLI~~lL~~DP~~R  653 (730)
                      +|||.+.+..++.++||||||+++|+|++|..||...+....+.++......++.  ...++..+.++|.+||..||++|
T Consensus       160 ~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  239 (260)
T cd05611         160 LAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKR  239 (260)
T ss_pred             cChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHc
Confidence            9999999988999999999999999999999999877655544444443333332  23578899999999999999999


Q ss_pred             CCchhcHHHHHcCCCCCCCCcc
Q 004790          654 LGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       654 ~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      ++. ..++|++.||||+.++|.
T Consensus       240 ~~~-~~~~~~l~~~~~~~~~~~  260 (260)
T cd05611         240 LGA-NGYQEIKSHPFFKSINWD  260 (260)
T ss_pred             cCC-CcHHHHHcChHhhcCCCC
Confidence            974 236899999999999994

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=1.3e-42  Score=365.75  Aligned_cols=265  Identities=29%  Similarity=0.459  Sum_probs=218.2

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ..+.|+++++||.|+||.||+|++..++..||+|++....   ......+.+|+.+++.++||||++++++|..+..+|+
T Consensus        10 ~~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   86 (292)
T cd06644          10 PNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKS---EEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWI   86 (292)
T ss_pred             cchhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEE
Confidence            3467999999999999999999999999999999987542   3445668889999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||++|++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....   
T Consensus        87 v~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~---  162 (292)
T cd06644          87 MIEFCPGGAVDAIMLEL-DRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVK---  162 (292)
T ss_pred             EEecCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceeccc---
Confidence            99999999998766543 24689999999999999999999999999999999999999999999999998742100   


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                               .......
T Consensus       163 -------------------------------------------------------------------------~~~~~~~  169 (292)
T cd06644         163 -------------------------------------------------------------------------TLQRRDS  169 (292)
T ss_pred             -------------------------------------------------------------------------cccccce
Confidence                                                                                     0001123


Q ss_pred             cccCcccCChhhhcc-----CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-cCCCCCCCChhHHHHH
Q 004790          569 FVGTHEYLAPEIIKG-----EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-RFPDSPATSYASRDLI  642 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g-----~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-~~p~~~~~s~~~~dLI  642 (730)
                      ..|++.|+|||++.+     ..++.++|||||||++|||++|..||...+....+.++..... ..+....++.++.+||
T Consensus       170 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  249 (292)
T cd06644         170 FIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFL  249 (292)
T ss_pred             ecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHHHHHHhcCCCccCCCCcccCHHHHHHH
Confidence            468899999999853     3467899999999999999999999987654433333322211 2223345678999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchh
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~  677 (730)
                      ++||..||++||+    +.++++||||..++|...
T Consensus       250 ~~~l~~~p~~Rp~----~~~il~~~~~~~~~~~~~  280 (292)
T cd06644         250 KTALDKHPETRPS----AAQLLEHPFVSSVTSNRP  280 (292)
T ss_pred             HHHhcCCcccCcC----HHHHhcCccccccccchh
Confidence            9999999999999    699999999999998754

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=5.6e-42  Score=365.27  Aligned_cols=253  Identities=27%  Similarity=0.425  Sum_probs=210.4

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|+++++||+|+||.||++++..++..||+|.+....  .......+.+|+++++.++||||++++++|.+++.+|+||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   78 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEI--KPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICM   78 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEe
Confidence            36999999999999999999999999999999986542  2234556888999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||++|++|..++.+.  +.+++..++.++.||+.||.|||+ .+|+||||||+|||++.++.+||+|||++.....    
T Consensus        79 ey~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~----  152 (308)
T cd06615          79 EHMDGGSLDQVLKKA--GRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID----  152 (308)
T ss_pred             eccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCcccccc----
Confidence            999999999988765  578999999999999999999997 6999999999999999999999999998732100    


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                                .....+
T Consensus       153 --------------------------------------------------------------------------~~~~~~  158 (308)
T cd06615         153 --------------------------------------------------------------------------SMANSF  158 (308)
T ss_pred             --------------------------------------------------------------------------cccccC
Confidence                                                                                      001134


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-------------------------
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-------------------------  624 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-------------------------  624 (730)
                      +|++.|+|||++.+..++.++|+|||||++|+|++|+.||...+..... .+...                         
T Consensus       159 ~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (308)
T cd06615         159 VGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELE-AMFGRPVSEGEAKESHRPVSGHPPDSPRPM  237 (308)
T ss_pred             CCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHH-HhhcCccccccccCCcccccCCCCCccchh
Confidence            7899999999999888999999999999999999999999754322111 11100                         


Q ss_pred             -------------cccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          625 -------------QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       625 -------------~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                                   ....|. ..++.++++||.+||..||++||+    +.++++||||.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~l~~~P~~Rpt----~~~ll~~~~~~~  292 (308)
T cd06615         238 AIFELLDYIVNEPPPKLPS-GAFSDEFQDFVDKCLKKNPKERAD----LKELTKHPFIKR  292 (308)
T ss_pred             hHHHHHHHHhcCCCccCcC-cccCHHHHHHHHHHccCChhhCcC----HHHHhcChhhhh
Confidence                         000111 135778999999999999999999    799999999975

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=2.7e-42  Score=360.32  Aligned_cols=256  Identities=26%  Similarity=0.411  Sum_probs=205.8

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++++.||.|+||.||+|++..++..||||++...... ......+.+|+.+++.++||||+++++++.++..+|+|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   79 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEE-EGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFE   79 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEecccccc-CCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEe
Confidence            589999999999999999999999999999998654322 2233567789999999999999999999999999999999


Q ss_pred             ecCCCCccccccccC-CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          412 YCPGGDLHTLRQRQP-GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       412 y~~GGsL~~ll~~~~-~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |++ ++|..++.... +..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++.......   
T Consensus        80 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~---  155 (285)
T cd07861          80 FLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPV---  155 (285)
T ss_pred             cCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCCCc---
Confidence            996 67877765433 3578999999999999999999999999999999999999999999999999984321000   


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                               .......
T Consensus       156 -------------------------------------------------------------------------~~~~~~~  162 (285)
T cd07861         156 -------------------------------------------------------------------------RVYTHEV  162 (285)
T ss_pred             -------------------------------------------------------------------------ccccCCc
Confidence                                                                                     0001235


Q ss_pred             cCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc------------------cccC---
Q 004790          571 GTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ------------------QLRF---  628 (730)
Q Consensus       571 GT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~------------------~~~~---  628 (730)
                      +++.|+|||++.+. .++.++|+|||||++|+|++|++||.+......+..+...                  ...+   
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (285)
T cd07861         163 VTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKW  242 (285)
T ss_pred             ccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhcccc
Confidence            78899999998765 4788999999999999999999999876433222211100                  0000   


Q ss_pred             ------CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          629 ------PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       629 ------p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                            .....++.++++||++||..||++||+    +.+++.||||
T Consensus       243 ~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt----~~~ll~~~~~  285 (285)
T cd07861         243 KKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRIS----AKKALNHPYF  285 (285)
T ss_pred             CcchhHHhcCCCCHHHHHHHHHHhcCChhhCCC----HHHHhcCCCC
Confidence                  012346889999999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-44  Score=392.58  Aligned_cols=260  Identities=28%  Similarity=0.470  Sum_probs=226.9

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +.|.|+..||-|+||+||+|..+.++-..|-|+|...   +.+.++.+.-|++||..++||+||+|++.|..++.+||+.
T Consensus        32 d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetk---seEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwili  108 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETK---SEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILI  108 (1187)
T ss_pred             HHHHHHhhhcCccchhhhhhhcccchhhhhhhhhccc---chhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEE
Confidence            5688999999999999999999999988999999754   3466778889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |||.||-...++-.. +..|.+.+++.+++|+|.||.|||+++|||||||..|||+..+|.|+|+|||.+...       
T Consensus       109 EFC~GGAVDaimlEL-~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn-------  180 (1187)
T KOG0579|consen  109 EFCGGGAVDAIMLEL-GRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKN-------  180 (1187)
T ss_pred             eecCCchHhHHHHHh-ccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccccc-------
Confidence            999999887765443 467999999999999999999999999999999999999999999999999987220       


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                     ++                      +..+.-+|+
T Consensus       181 -----------------------------------------------~~----------------------t~qkRDsFI  191 (1187)
T KOG0579|consen  181 -----------------------------------------------KS----------------------TRQKRDSFI  191 (1187)
T ss_pred             -----------------------------------------------hh----------------------HHhhhcccc
Confidence                                                           00                      112334789


Q ss_pred             cCcccCChhhhc-----cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-ccCCCCCCCChhHHHHHHh
Q 004790          571 GTHEYLAPEIIK-----GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-LRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       571 GT~~Y~APEvl~-----g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-~~~p~~~~~s~~~~dLI~~  644 (730)
                      |||+|||||++.     ..+|++++||||||++|.||..+.+|-...+.+..+.+|.... ..+-.+..++..++||+.+
T Consensus       192 GTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~  271 (1187)
T KOG0579|consen  192 GTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKR  271 (1187)
T ss_pred             CCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCCCcccCcchhhhHHHHHHHH
Confidence            999999999975     4579999999999999999999999998888888888876543 3444556788999999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      ||.+||..||+    +++||+||||..++-
T Consensus       272 cL~Knp~~Rp~----aaqll~Hpfv~~~~S  297 (1187)
T KOG0579|consen  272 CLVKNPRNRPP----AAQLLKHPFVQNAPS  297 (1187)
T ss_pred             HHhcCCccCCC----HHHHhhCcccccCCc
Confidence            99999999999    899999999997653

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=5.2e-42  Score=359.93  Aligned_cols=262  Identities=35%  Similarity=0.618  Sum_probs=207.1

Q ss_pred             EEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHH---HHHHhcCCCCCccccccccccceeeEEeeecC
Q 004790          338 RLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTER---EILQLLDHPFLPTLYTHFETDRFSCLVMEYCP  414 (730)
Q Consensus       338 ~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~---~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~  414 (730)
                      .||+|+||.||+|++..+++.||+|++.+..............|.   .+++..+||||+.++++|..+..+|+||||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            389999999999999999999999999875433222222233343   34455689999999999999999999999999


Q ss_pred             CCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCC
Q 004790          415 GGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS  494 (730)
Q Consensus       415 GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~  494 (730)
                      |++|..++...  +.+++..++.|+.|++.||.|||+.+|+||||||+|||++.++.+||+|||++.....         
T Consensus        81 g~~L~~~l~~~--~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~---------  149 (278)
T cd05606          81 GGDLHYHLSQH--GVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK---------  149 (278)
T ss_pred             CCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCc---------
Confidence            99999877654  5799999999999999999999999999999999999999999999999998742100         


Q ss_pred             CCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcc
Q 004790          495 LDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHE  574 (730)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~  574 (730)
                                                                                           ......+||..
T Consensus       150 ---------------------------------------------------------------------~~~~~~~~~~~  160 (278)
T cd05606         150 ---------------------------------------------------------------------KKPHASVGTHG  160 (278)
T ss_pred             ---------------------------------------------------------------------cCCcCcCCCcC
Confidence                                                                                 00012368999


Q ss_pred             cCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccc--ee-eeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          575 YLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT--LF-NVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       575 Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~--l~-~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      |+|||++.+. .++.++|+||+||++|||++|+.||.+......  .. .+......+|  ...+.++.+||.+||..||
T Consensus       161 y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~li~~~l~~~p  238 (278)
T cd05606         161 YMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELP--DSFSPELRSLLEGLLQRDV  238 (278)
T ss_pred             CcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhccCCCCC--CcCCHHHHHHHHHHhhcCH
Confidence            9999999754 689999999999999999999999987532211  11 1111222222  3468899999999999999


Q ss_pred             CCcCCch-hcHHHHHcCCCCCCCCcchhccCC
Q 004790          651 QHRLGVK-RGATEIKQHPFFEGVNWALIRCST  681 (730)
Q Consensus       651 ~~R~t~~-~~a~elL~HPfF~~v~w~~~r~~~  681 (730)
                      .+|+... ..+.++++||||+.++|..+....
T Consensus       239 ~~R~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  270 (278)
T cd05606         239 NRRLGCLGRGAQEVKEHPFFRSLDWQMVFLQK  270 (278)
T ss_pred             HhccCCCCCCHHHHHhCccccCCCchHhhhcc
Confidence            9999321 127999999999999999875443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=9.9e-42  Score=372.14  Aligned_cols=253  Identities=23%  Similarity=0.381  Sum_probs=200.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +...+|++++.||+|+||.||+|++..++..||+|+..+..         ...|+.+|+.++||||++++++|..+...|
T Consensus        63 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~---------~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  133 (357)
T PHA03209         63 VASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGT---------TLIEAMLLQNVNHPSVIRMKDTLVSGAITC  133 (357)
T ss_pred             hhhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCccc---------cHHHHHHHHhCCCCCCcChhheEEeCCeeE
Confidence            33467999999999999999999999999999999865432         346899999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+ .++|..++... ...+++..++.|+.||+.||.|||++|||||||||+|||++.++.+||+|||++.....  
T Consensus       134 lv~e~~-~~~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~--  209 (357)
T PHA03209        134 MVLPHY-SSDLYTYLTKR-SRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVV--  209 (357)
T ss_pred             EEEEcc-CCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCcccccccc--
Confidence            999999 56787766543 35789999999999999999999999999999999999999999999999998732100  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       210 ---------------------------------------------------------------------------~~~~~  214 (357)
T PHA03209        210 ---------------------------------------------------------------------------APAFL  214 (357)
T ss_pred             ---------------------------------------------------------------------------Ccccc
Confidence                                                                                       00011


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCC-CCCCCCc---------cceeeeecc----cccCC----
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTP-FKGSGNR---------ATLFNVVGQ----QLRFP----  629 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~P-F~g~~~~---------~~l~~i~~~----~~~~p----  629 (730)
                      ...||+.|+|||++.+..++.++|||||||++|||+++..+ |......         ..+..++..    ...++    
T Consensus       215 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  294 (357)
T PHA03209        215 GLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPG  294 (357)
T ss_pred             cccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCc
Confidence            34799999999999999999999999999999999975444 4432111         011111000    00011    


Q ss_pred             ------------------------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          630 ------------------------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       630 ------------------------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                                              ....++.++++||++||..||.+||+    +.|+|+||||+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rpt----a~e~l~hp~f~~~  357 (357)
T PHA03209        295 SRLVRGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPS----AEEILNYPMFAQL  357 (357)
T ss_pred             cHHHHHHHhhcccCCCcccccHHHhccCCCchHHHHHHHHHcCCcccCcC----HHHHhcCchhccC
Confidence                                    11245667889999999999999999    7999999999863

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=8.7e-42  Score=351.92  Aligned_cols=256  Identities=36%  Similarity=0.649  Sum_probs=216.8

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++.+.||.|+||.||+|.+..++..||+|++.+...........+.+|+++++.++||||+++++.|+++..+|+|||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            58999999999999999999999999999999987765555667788999999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+.|++|..++...  ..+++..+..++.||+.||.|||.+||+|+||||+||+++.++.++|+|||++......     
T Consensus        81 ~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~-----  153 (258)
T cd05578          81 LLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPD-----  153 (258)
T ss_pred             CCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCCC-----
Confidence            99999999887764  57899999999999999999999999999999999999999999999999987431000     


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                              .......|
T Consensus       154 ------------------------------------------------------------------------~~~~~~~~  161 (258)
T cd05578         154 ------------------------------------------------------------------------TLTTSTSG  161 (258)
T ss_pred             ------------------------------------------------------------------------ccccccCC
Confidence                                                                                    00012357


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCC--ccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN--RATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~--~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      +..|+|||++.+..++.++|+|||||++|+|++|..||.....  ...+...... .........+.++.++|++||..|
T Consensus       162 ~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~  240 (258)
T cd05578         162 TPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQET-ADVLYPATWSTEAIDAINKLLERD  240 (258)
T ss_pred             ChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhcc-ccccCcccCcHHHHHHHHHHccCC
Confidence            8899999999999899999999999999999999999987654  2222222221 122223457889999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF  669 (730)
                      |.+|+++.  .+|+++||||
T Consensus       241 p~~R~~~~--~~~l~~~~~~  258 (258)
T cd05578         241 PQKRLGDN--LKDLKNHPYF  258 (258)
T ss_pred             hhHcCCcc--HHHHhcCCCC
Confidence            99999942  4899999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=6.9e-42  Score=357.68  Aligned_cols=256  Identities=29%  Similarity=0.420  Sum_probs=210.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccc------c
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFE------T  402 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~------~  402 (730)
                      .+.|++.+.||.|+||.||+|++..+++.||+|++....    .....+..|+.+++.+ +||||++++++|.      .
T Consensus        15 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~   90 (282)
T cd06636          15 AGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE----DEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGH   90 (282)
T ss_pred             hhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh----HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCC
Confidence            467999999999999999999999999999999986643    2334577899999888 7999999999985      3


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      ...+|+||||+++|+|..++.......+++..+..++.||+.||.|||+.||+||||||+||+++.++.++|+|||++..
T Consensus        91 ~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~  170 (282)
T cd06636          91 DDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  170 (282)
T ss_pred             CCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcchhh
Confidence            56789999999999999988776556788999999999999999999999999999999999999999999999998743


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ....                                                                            
T Consensus       171 ~~~~----------------------------------------------------------------------------  174 (282)
T cd06636         171 LDRT----------------------------------------------------------------------------  174 (282)
T ss_pred             hhcc----------------------------------------------------------------------------
Confidence            2100                                                                            


Q ss_pred             cccccccccCcccCChhhhc-----cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChh
Q 004790          563 AARSMSFVGTHEYLAPEIIK-----GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYA  637 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~-----g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~  637 (730)
                      .......+|++.|+|||++.     +..++.++|+|||||++|||++|..||........+..+............++.+
T Consensus       175 ~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (282)
T cd06636         175 VGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKSKKWSKK  254 (282)
T ss_pred             ccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhhHhhCCCCCCcccccCHH
Confidence            00112357899999999986     3457889999999999999999999997665444443332222111122356889


Q ss_pred             HHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          638 SRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      +.+||++||..||.+||+    +.+|++||||
T Consensus       255 ~~~li~~cl~~~p~~Rp~----~~ell~~~~~  282 (282)
T cd06636         255 FIDFIEGCLVKNYLSRPS----TEQLLKHPFI  282 (282)
T ss_pred             HHHHHHHHhCCChhhCcC----HHHHhcCCCC
Confidence            999999999999999999    7999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-43  Score=361.32  Aligned_cols=254  Identities=30%  Similarity=0.466  Sum_probs=218.5

Q ss_pred             cCCeEEE-eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccc----c
Q 004790          330 MSHFRLL-KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFET----D  403 (730)
Q Consensus       330 ~~~y~il-~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~----~  403 (730)
                      .++|.+- ++||-|-.|+|..+.++.|+..+|+|++...        ..+++|+++.-.. .|||||+++++|+.    .
T Consensus        60 tedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds--------~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~r  131 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS--------PKARREVELHWMASGHPHIVSIIDVYENSYQGR  131 (400)
T ss_pred             hhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC--------HHHHhHhhhhhhhcCCCceEEeehhhhhhccCc
Confidence            4678776 5899999999999999999999999998432        3467899886554 89999999998864    5


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---CCceEEeccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---DGHIMLSDFDLS  480 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~g~vKL~DFGlA  480 (730)
                      ..+.+|||.|+||+|+..++.+....|+|.+|..|++||..||.|||+.+|.||||||||+|+..   +..+||+|||+|
T Consensus       132 kcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFA  211 (400)
T KOG0604|consen  132 KCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFA  211 (400)
T ss_pred             eeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEecccccc
Confidence            67889999999999999998887788999999999999999999999999999999999999965   567999999999


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +.-..                                                                           
T Consensus       212 K~t~~---------------------------------------------------------------------------  216 (400)
T KOG0604|consen  212 KETQE---------------------------------------------------------------------------  216 (400)
T ss_pred             cccCC---------------------------------------------------------------------------
Confidence            54110                                                                           


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCC----ccceeeeecccccCCC--CCCC
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN----RATLFNVVGQQLRFPD--SPAT  634 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~----~~~l~~i~~~~~~~p~--~~~~  634 (730)
                        ....++.|-||.|.|||++..+.|+...|+||+||++|-||+|.+||+....    ..+-.+|..+++.||.  |..+
T Consensus       217 --~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~V  294 (400)
T KOG0604|consen  217 --PGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCV  294 (400)
T ss_pred             --CccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHH
Confidence              0112345789999999999999999999999999999999999999997643    2344567888998885  5678


Q ss_pred             ChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          635 SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       635 s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      |.+++|+|++||..+|.+|+|    .++++.|||..+-
T Consensus       295 Se~aKdlIR~LLkt~PteRlT----I~~~m~hpwi~~~  328 (400)
T KOG0604|consen  295 SEAAKDLIRKLLKTEPTERLT----IEEVMDHPWINQY  328 (400)
T ss_pred             HHHHHHHHHHHhcCCchhhee----HHHhhcCchhccc
Confidence            999999999999999999999    5899999999863

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=9.3e-42  Score=353.46  Aligned_cols=255  Identities=26%  Similarity=0.413  Sum_probs=211.5

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ..++|++++.||+|+||.||+|++..+++.||+|++.....   .....+++|+.+++.++||||+++++++..+..+|+
T Consensus         7 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~---~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~i   83 (267)
T cd06646           7 PQHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPG---DDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWI   83 (267)
T ss_pred             chhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCcc---chHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEE
Confidence            34689999999999999999999999999999999865422   233457889999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||+++++|.+++...  ..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++..+...  
T Consensus        84 v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~--  159 (267)
T cd06646          84 CMEYCGGGSLQDIYHVT--GPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITAT--  159 (267)
T ss_pred             EEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeeccc--
Confidence            99999999999887654  56899999999999999999999999999999999999999999999999998542100  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                ......
T Consensus       160 --------------------------------------------------------------------------~~~~~~  165 (267)
T cd06646         160 --------------------------------------------------------------------------IAKRKS  165 (267)
T ss_pred             --------------------------------------------------------------------------ccccCc
Confidence                                                                                      000112


Q ss_pred             cccCcccCChhhhcc---CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC---CCCCChhHHHHH
Q 004790          569 FVGTHEYLAPEIIKG---EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD---SPATSYASRDLI  642 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g---~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~---~~~~s~~~~dLI  642 (730)
                      ..|++.|+|||.+.+   ..++.++|+|||||++|||++|+.||...........+....+..+.   ...++..+++||
T Consensus       166 ~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  245 (267)
T cd06646         166 FIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFV  245 (267)
T ss_pred             cccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHHHH
Confidence            468899999999853   44778999999999999999999999765544444444333333222   234678999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCC
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPF  668 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPf  668 (730)
                      ++||..||++||+    ++++++|+|
T Consensus       246 ~~~l~~~P~~Rp~----~~~il~~l~  267 (267)
T cd06646         246 KISLTKNPKKRPT----AERLLTHLF  267 (267)
T ss_pred             HHHhhCChhhCcC----HHHHhcCCC
Confidence            9999999999999    789999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=3.6e-42  Score=356.59  Aligned_cols=254  Identities=28%  Similarity=0.453  Sum_probs=210.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++.+.||+|+||.||+|++..+++.||+|+++....   .....+++|+.+++.++||||+++++.+..+..+|+|
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv   84 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPG---EDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWIC   84 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCch---hHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEE
Confidence            4578999999999999999999999999999999875432   3345578899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+++++|.+++...  +.+++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......   
T Consensus        85 ~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~---  159 (267)
T cd06645          85 MEFCGGGSLQDIYHVT--GPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITAT---  159 (267)
T ss_pred             EeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEccCc---
Confidence            9999999999987654  57899999999999999999999999999999999999999999999999998432100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       160 -------------------------------------------------------------------------~~~~~~~  166 (267)
T cd06645         160 -------------------------------------------------------------------------IAKRKSF  166 (267)
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0001124


Q ss_pred             ccCcccCChhhhc---cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC---CCCCCChhHHHHHH
Q 004790          570 VGTHEYLAPEIIK---GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP---DSPATSYASRDLIR  643 (730)
Q Consensus       570 vGT~~Y~APEvl~---g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p---~~~~~s~~~~dLI~  643 (730)
                      .||+.|+|||++.   ...++.++|+|||||++|+|++|..||........+..........+   ....++..+++||.
T Consensus       167 ~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  246 (267)
T cd06645         167 IGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVK  246 (267)
T ss_pred             cCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHH
Confidence            6899999999985   44578899999999999999999999976554433333222222222   12346778999999


Q ss_pred             hhhcCCCCCcCCchhcHHHHHcCCC
Q 004790          644 GLLVKEPQHRLGVKRGATEIKQHPF  668 (730)
Q Consensus       644 ~lL~~DP~~R~t~~~~a~elL~HPf  668 (730)
                      +||..||++||+    ++++++|||
T Consensus       247 ~~l~~~P~~R~~----~~~ll~~~~  267 (267)
T cd06645         247 MALTKNPKKRPT----AEKLLQHPF  267 (267)
T ss_pred             HHccCCchhCcC----HHHHhcCCC
Confidence            999999999999    799999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=1.2e-41  Score=352.26  Aligned_cols=261  Identities=26%  Similarity=0.419  Sum_probs=214.3

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh------hHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA------SRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~------~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      +|.+.+.||.|+||.||+|.+..+++.||+|.+......      ..+....+.+|+.+++.++||||+++++++..+..
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH   80 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc
Confidence            367889999999999999999989999999988654322      22345678899999999999999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      .|+||||+++++|..++...  +.+++..++.++.||+.||+|||++|++||||||+|||++.++.++|+|||+++....
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~  158 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNNY--GAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEA  158 (267)
T ss_pred             cEEEEEecCCCCHHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCccccc
Confidence            99999999999999988765  5689999999999999999999999999999999999999999999999999854311


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ....               .                                                       .....
T Consensus       159 ~~~~---------------~-------------------------------------------------------~~~~~  168 (267)
T cd06628         159 NSLS---------------T-------------------------------------------------------KTNGA  168 (267)
T ss_pred             cccc---------------C-------------------------------------------------------Ccccc
Confidence            0000               0                                                       00001


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ...+.|+..|+|||++.+..++.++|+|||||++|+|++|+.||.+.+....+.++... .........+..+.+||++|
T Consensus       169 ~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~  247 (267)
T cd06628         169 RPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGEN-ASPEIPSNISSEAIDFLEKT  247 (267)
T ss_pred             ccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHHHhcc-CCCcCCcccCHHHHHHHHHH
Confidence            12356899999999999999999999999999999999999999876554444333221 11122235688999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCC
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      |..||++||+    +.++++||||
T Consensus       248 l~~~p~~Rp~----~~~il~~~~~  267 (267)
T cd06628         248 FEIDHNKRPT----AAELLKHPFL  267 (267)
T ss_pred             ccCCchhCcC----HHHHhhCCCC
Confidence            9999999999    7999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=1.9e-41  Score=349.18  Aligned_cols=261  Identities=28%  Similarity=0.412  Sum_probs=216.0

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||.|+||+||+|.+..++..+|+|++.+.....  ....+.+|+++|+.++|+||+++++.+..+...|+||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~   78 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQT--SVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVM   78 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcch--HHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEE
Confidence            47999999999999999999999899999999997654332  5567889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCC-CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          411 EYCPGGDLHTLRQRQPG-KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~-~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||++|++|..++..... ..+++..++.++.||+.||.|||++||+||||||+||+++.++.++|+|||++.........
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~  158 (267)
T cd06610          79 PYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDR  158 (267)
T ss_pred             eccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccc
Confidence            99999999998875422 56899999999999999999999999999999999999999999999999998542110000


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              ........
T Consensus       159 ------------------------------------------------------------------------~~~~~~~~  166 (267)
T cd06610         159 ------------------------------------------------------------------------TRKVRKTF  166 (267)
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    00011235


Q ss_pred             ccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-cCCCC---CCCChhHHHHHHh
Q 004790          570 VGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-RFPDS---PATSYASRDLIRG  644 (730)
Q Consensus       570 vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-~~p~~---~~~s~~~~dLI~~  644 (730)
                      +|+..|+|||++... .++.++|+|||||++|+|++|+.||...+....+.++..... .++..   ..++.++++||.+
T Consensus       167 ~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  246 (267)
T cd06610         167 VGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISL  246 (267)
T ss_pred             cCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHH
Confidence            789999999999877 789999999999999999999999987655544444333221 12211   2567889999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      ||.+||++||+    +.+|++||||
T Consensus       247 ~l~~~p~~Rp~----~~~ll~~p~~  267 (267)
T cd06610         247 CLQKDPSKRPT----AEELLKHKFF  267 (267)
T ss_pred             HcCCChhhCcC----HHHHhhCCCC
Confidence            99999999999    7999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.3e-41  Score=405.17  Aligned_cols=268  Identities=26%  Similarity=0.402  Sum_probs=218.9

Q ss_pred             cCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc-
Q 004790          324 RDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET-  402 (730)
Q Consensus       324 ~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~-  402 (730)
                      .++.+.+.+|++++.||.|+||+||+|++..++..||+|++....... .....+..|+.+|+.|+|||||+++++|.. 
T Consensus         6 ~~ge~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e-~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de   84 (1021)
T PTZ00266          6 DDGESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKE-REKSQLVIEVNVMRELKHKNIVRYIDRFLNK   84 (1021)
T ss_pred             cCCccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCH-HHHHHHHHHHHHHHHcCCCCcCeEEEEEEec
Confidence            345567789999999999999999999999999999999997654332 345678899999999999999999998854 


Q ss_pred             -cceeeEEeeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhc-------ceeecccCCccEEecC----
Q 004790          403 -DRFSCLVMEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHML-------GVVYRDLKPENVLVRD----  468 (730)
Q Consensus       403 -~~~l~LVmEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~-------gIVHRDLKPeNILl~~----  468 (730)
                       ...+||||||+++|+|..++...  ....+++..++.|+.||+.||.|||..       +||||||||+||||+.    
T Consensus        85 ~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~  164 (1021)
T PTZ00266         85 ANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRH  164 (1021)
T ss_pred             CCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccc
Confidence             46799999999999999887642  224699999999999999999999985       4999999999999964    


Q ss_pred             -------------CCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccc
Q 004790          469 -------------DGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQK  535 (730)
Q Consensus       469 -------------~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~  535 (730)
                                   .+.+||+|||++..+...                                                 
T Consensus       165 lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~-------------------------------------------------  195 (1021)
T PTZ00266        165 IGKITAQANNLNGRPIAKIGDFGLSKNIGIE-------------------------------------------------  195 (1021)
T ss_pred             cccccccccccCCCCceEEccCCcccccccc-------------------------------------------------
Confidence                         345899999998432100                                                 


Q ss_pred             cccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccC--CCCCcceeechhHHHHHHhhCCCCCCCCC
Q 004790          536 NKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGE--GHGSAVDWWTFGIFLHELLYGKTPFKGSG  613 (730)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~--~~~~~sDIWSLG~iLyELltG~~PF~g~~  613 (730)
                                                  ......+||+.|+|||++.+.  .++.++||||||||||||++|+.||....
T Consensus       196 ----------------------------s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~  247 (1021)
T PTZ00266        196 ----------------------------SMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKAN  247 (1021)
T ss_pred             ----------------------------ccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCC
Confidence                                        001134799999999999754  47899999999999999999999998766


Q ss_pred             CccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          614 NRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       614 ~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      ....+...+.....++. ...+.++.+||.+||..+|.+||+    +.++|+|+||..+..
T Consensus       248 ~~~qli~~lk~~p~lpi-~~~S~eL~dLI~~~L~~dPeeRPS----a~QlL~h~~ik~i~~  303 (1021)
T PTZ00266        248 NFSQLISELKRGPDLPI-KGKSKELNILIKNLLNLSAKERPS----ALQCLGYQIIKNVGP  303 (1021)
T ss_pred             cHHHHHHHHhcCCCCCc-CCCCHHHHHHHHHHhcCChhHCcC----HHHHhccHHHhhcCC
Confidence            55555444443333332 346889999999999999999999    799999999987653

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=2.2e-41  Score=350.69  Aligned_cols=260  Identities=29%  Similarity=0.433  Sum_probs=211.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhh--hhhHHHHHHHHHHHHHHHhcCCCCCccccccccc--ccee
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS--LASRKKLTRAQTEREILQLLDHPFLPTLYTHFET--DRFS  406 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~--~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~--~~~l  406 (730)
                      .+|++.+.||+|+||.||++++..+++.||||++....  .........+.+|+.+++.++||||+++++++.+  ...+
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            57999999999999999999999999999999886432  2223456778899999999999999999999876  3578


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||++|++|.+++.+.  ..+++..+..++.||+.||+|||++||+|+||||+|||++.++.++|+|||++......
T Consensus        82 ~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~  159 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSY--GALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTI  159 (265)
T ss_pred             EEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccccccc
Confidence            9999999999999887754  46889999999999999999999999999999999999999999999999988532100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ..                                                                         .....
T Consensus       160 ~~-------------------------------------------------------------------------~~~~~  166 (265)
T cd06652         160 CL-------------------------------------------------------------------------SGTGM  166 (265)
T ss_pred             cc-------------------------------------------------------------------------ccccc
Confidence            00                                                                         00001


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ....||..|+|||++.+..++.++|+|||||++|||++|+.||........+.++.............+..+.++|++||
T Consensus       167 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  246 (265)
T cd06652         167 KSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPVLPPHVSDHCRDFLKRIF  246 (265)
T ss_pred             ccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHh
Confidence            12468999999999999889999999999999999999999998765444443333222222222356778899999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      . +|++||+    ++++++|||+.
T Consensus       247 ~-~p~~Rp~----~~~il~~~~~~  265 (265)
T cd06652         247 V-EAKLRPS----ADELLRHTFVH  265 (265)
T ss_pred             c-ChhhCCC----HHHHhcCcccC
Confidence            5 9999999    79999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.2e-42  Score=358.26  Aligned_cols=259  Identities=27%  Similarity=0.472  Sum_probs=215.8

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||.|+||.||++.+..++..||+|++....   ......+.+|+++++.++||||+++++.+.++..+|+||
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIES---EEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILI   81 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCC---HHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEe
Confidence            56999999999999999999999899999999986542   244566888999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+++++|..++... +..+++..++.++.||+.||.|||++||+||||||+||+++.++.++|+|||++.....     
T Consensus        82 e~~~~~~L~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~-----  155 (280)
T cd06611          82 EFCDGGALDSIMLEL-ERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKS-----  155 (280)
T ss_pred             eccCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhcc-----
Confidence            999999999887653 34699999999999999999999999999999999999999999999999998743100     


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                             .........
T Consensus       156 -----------------------------------------------------------------------~~~~~~~~~  164 (280)
T cd06611         156 -----------------------------------------------------------------------TLQKRDTFI  164 (280)
T ss_pred             -----------------------------------------------------------------------cccccceee
Confidence                                                                                   000112346


Q ss_pred             cCcccCChhhhcc-----CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-cCCCCCCCChhHHHHHHh
Q 004790          571 GTHEYLAPEIIKG-----EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-RFPDSPATSYASRDLIRG  644 (730)
Q Consensus       571 GT~~Y~APEvl~g-----~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-~~p~~~~~s~~~~dLI~~  644 (730)
                      ||+.|+|||++..     ..++.++|+|||||++|||++|+.||.+......+.++..... .+.....++.++.+||.+
T Consensus       165 ~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  244 (280)
T cd06611         165 GTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKS  244 (280)
T ss_pred             cchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHH
Confidence            8999999999863     3467799999999999999999999987655444444433221 222334678899999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      ||..||.+||+    +.++++||||....
T Consensus       245 ~l~~~p~~Rps----~~~il~~~~~~~~~  269 (280)
T cd06611         245 CLVKDPDDRPT----AAELLKHPFVSDQS  269 (280)
T ss_pred             HhccChhhCcC----HHHHhcChhhcccc
Confidence            99999999999    69999999998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-44  Score=365.56  Aligned_cols=255  Identities=27%  Similarity=0.426  Sum_probs=226.9

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      -|.++.+||+|+||.||+|.++.+|..+|||.+...     ..++.+..|+.|+++++.|++|++|+.|.....+|+|||
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~-----sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVME  108 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD-----TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVME  108 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc-----chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehh
Confidence            378889999999999999999999999999988654     456778899999999999999999999998899999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      ||..|+..+++.. +.+.|+|..+..+++..+.||+|||...-||||||..|||++.+|+.||+|||.|-++.       
T Consensus       109 YCGAGSiSDI~R~-R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLT-------  180 (502)
T KOG0574|consen  109 YCGAGSISDIMRA-RRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLT-------  180 (502)
T ss_pred             hcCCCcHHHHHHH-hcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhh-------
Confidence            9999999997654 35789999999999999999999999999999999999999999999999999984321       


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                           .+-+...+.+|
T Consensus       181 ---------------------------------------------------------------------DTMAKRNTVIG  191 (502)
T KOG0574|consen  181 ---------------------------------------------------------------------DTMAKRNTVIG  191 (502)
T ss_pred             ---------------------------------------------------------------------hhHHhhCcccc
Confidence                                                                                 12234457899


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-cccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-QLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      ||.|||||++..-+|+.++||||||++..||..|++||........++.|-.. ...|..+..+|+++.|||++||.+.|
T Consensus       192 TPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~P  271 (502)
T KOG0574|consen  192 TPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKP  271 (502)
T ss_pred             CcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCH
Confidence            99999999999999999999999999999999999999988888777777544 33455556789999999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ++|-|    |.++++|||.++.
T Consensus       272 E~R~T----A~~L~~H~FiknA  289 (502)
T KOG0574|consen  272 EERKT----ALRLCEHTFIKNA  289 (502)
T ss_pred             HHHHH----HHHHhhhhhhcCC
Confidence            99999    8999999999874

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=9.3e-42  Score=356.64  Aligned_cols=255  Identities=26%  Similarity=0.418  Sum_probs=202.2

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++++.||+|+||.||+|++..+++.||+|.+..... .......+.+|+++++.++||||+++++++.+...+|+|||
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~-~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFE   79 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccc-cccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEe
Confidence            48999999999999999999999999999999975432 22233456789999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+. ++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.......    
T Consensus        80 ~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----  153 (284)
T cd07839          80 YCD-QDLKKYFDSC-NGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPV----  153 (284)
T ss_pred             cCC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCC----
Confidence            995 5777765543 2568999999999999999999999999999999999999999999999999984321000    


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                              .......+
T Consensus       154 ------------------------------------------------------------------------~~~~~~~~  161 (284)
T cd07839         154 ------------------------------------------------------------------------RCYSAEVV  161 (284)
T ss_pred             ------------------------------------------------------------------------CCcCCCcc
Confidence                                                                                    00012357


Q ss_pred             CcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCC-ccceeeeec-----------------ccccC----
Q 004790          572 THEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNVVG-----------------QQLRF----  628 (730)
Q Consensus       572 T~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~-~~~l~~i~~-----------------~~~~~----  628 (730)
                      |+.|+|||++.+.. ++.++|||||||++|||++|..||..... ...+..+..                 ....+    
T Consensus       162 ~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (284)
T cd07839         162 TLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYP  241 (284)
T ss_pred             ccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCC
Confidence            88999999998754 78999999999999999999888643222 111111100                 00000    


Q ss_pred             ------CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          629 ------PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       629 ------p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                            ...+.++.++++||++||..||.+|||    ++++++||||
T Consensus       242 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t----~~~il~h~~f  284 (284)
T cd07839         242 ATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRIS----AEEALQHPYF  284 (284)
T ss_pred             CcchhhhhcccCCHHHHHHHHHHhcCChhhcCC----HHHHhcCCCC
Confidence                  011346789999999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-41  Score=353.98  Aligned_cols=258  Identities=30%  Similarity=0.484  Sum_probs=216.4

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||.|+||.||+|++..++..||+|++....  .......+.+|+++++.++||||++++++|.++..+|+|+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEE--AEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIM   78 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccc--cchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEE
Confidence            36899999999999999999999999999999987653  2234456788999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+++++|..++...   .+++..++.++.||+.||.|||++||+||||+|+||+++.++.++|+|||+++......   
T Consensus        79 e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~---  152 (274)
T cd06609          79 EYCGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTM---  152 (274)
T ss_pred             EeeCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeecccc---
Confidence            999999999887754   78999999999999999999999999999999999999999999999999985431100   


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                               .......
T Consensus       153 -------------------------------------------------------------------------~~~~~~~  159 (274)
T cd06609         153 -------------------------------------------------------------------------SKRNTFV  159 (274)
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0111346


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      |++.|+|||++.+..++.++|||||||++|+|++|+.||.+.+.......+............++.+++++|.+||..||
T Consensus       160 ~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p  239 (274)
T cd06609         160 GTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNPPSLEGNKFSKPFKDFVSLCLNKDP  239 (274)
T ss_pred             CCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHHHHHHhhhcCCCCCcccccCHHHHHHHHHHhhCCh
Confidence            88999999999998899999999999999999999999987654444333332222111112268889999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCCCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      ++||+    ++++++||||....
T Consensus       240 ~~Rpt----~~~il~~~~~~~~~  258 (274)
T cd06609         240 KERPS----AKELLKHKFIKKAK  258 (274)
T ss_pred             hhCcC----HHHHhhChhhcCCC
Confidence            99999    79999999998754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=2e-41  Score=350.68  Aligned_cols=261  Identities=26%  Similarity=0.379  Sum_probs=212.3

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhh---hhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS---LASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~---~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      +|++.+.||.|+||+||+|... ++..+|+|.+....   .........+.+|+++|+.++|+||+++++++.+...+|+
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l   79 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTN-QGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISI   79 (265)
T ss_pred             CccccceEeccCCeEEEEEEEc-CCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEE
Confidence            4788999999999999999874 67789999886432   1223445678899999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||++|++|..++.+.  ..+++..+..++.||+.||+|||+.||+|+||||+||+++.++.++|+|||++........
T Consensus        80 v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  157 (265)
T cd06631          80 FMEFVPGGSISSILNRF--GPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGL  157 (265)
T ss_pred             EEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhccc
Confidence            99999999999988764  4689999999999999999999999999999999999999999999999999854211000


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                      ..                                                                      ........
T Consensus       158 ~~----------------------------------------------------------------------~~~~~~~~  167 (265)
T cd06631         158 HG----------------------------------------------------------------------THSNMLKS  167 (265)
T ss_pred             cc----------------------------------------------------------------------cccccccc
Confidence            00                                                                      00001123


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccC-CCCCCCChhHHHHHHhhhc
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF-PDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~-p~~~~~s~~~~dLI~~lL~  647 (730)
                      ..||..|+|||++.+..++.++|+|||||++|+|++|..||...+.......+....... +.....+.++.+||++||.
T Consensus       168 ~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  247 (265)
T cd06631         168 MHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLT  247 (265)
T ss_pred             cCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhc
Confidence            468999999999999999999999999999999999999998755444333333221111 2234578899999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      .+|++||+    +.++++||||
T Consensus       248 ~~p~~Rp~----~~~~l~~~~~  265 (265)
T cd06631         248 RDQHERPS----ALQLLRHDFL  265 (265)
T ss_pred             CCcccCCC----HHHHhcCCCC
Confidence            99999999    7999999998

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=2.3e-41  Score=351.20  Aligned_cols=260  Identities=29%  Similarity=0.444  Sum_probs=210.1

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhh--hhHHHHHHHHHHHHHHHhcCCCCCccccccccc--ccee
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--ASRKKLTRAQTEREILQLLDHPFLPTLYTHFET--DRFS  406 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~--~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~--~~~l  406 (730)
                      .+|++.+.||+|+||.||+|.+..++..||+|++.....  ...+....+.+|+.+++.++||||+++++++.+  +..+
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            368999999999999999999999999999999865432  223455678899999999999999999998865  4678


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |++|||+++++|..++...  ..+++...+.++.||+.||+|||++||+||||||+||+++.++.+||+|||++......
T Consensus        82 ~l~~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~  159 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAY--GALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTI  159 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCccccccc
Confidence            9999999999999887654  46889999999999999999999999999999999999999999999999998532100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ..                                                                         .....
T Consensus       160 ~~-------------------------------------------------------------------------~~~~~  166 (266)
T cd06651         160 CM-------------------------------------------------------------------------SGTGI  166 (266)
T ss_pred             cc-------------------------------------------------------------------------cCCcc
Confidence            00                                                                         00000


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ....|+..|+|||++.+..++.++|+|||||++|||++|+.||...........+.............+..+++|| +||
T Consensus       167 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-~~~  245 (266)
T cd06651         167 RSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHARDFL-GCI  245 (266)
T ss_pred             ccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHHHHHHHhcCCCCCCCchhcCHHHHHHH-HHh
Confidence            1245889999999999988999999999999999999999999876544444333222222111234678889999 566


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      ..+|++||+    ++|+++||||+
T Consensus       246 ~~~p~~Rp~----~~eil~hp~~~  265 (266)
T cd06651         246 FVEARHRPS----AEELLRHPFAQ  265 (266)
T ss_pred             cCChhhCcC----HHHHhcCcccc
Confidence            689999999    79999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=3.2e-41  Score=357.66  Aligned_cols=256  Identities=25%  Similarity=0.403  Sum_probs=215.6

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      .+|++++.||.|+||.||++.+..+++.||+|.+......   ..+.+.+|+.+++.++||||++++++|..+..+|+||
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   95 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQP---KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   95 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccc---hHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEee
Confidence            7899999999999999999999999999999999754332   2355788999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++|++|..++...   .+++.++..++.|++.||.|||+.||+||||||+|||++.++.++|+|||++......    
T Consensus        96 e~~~~~~L~~~~~~~---~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~----  168 (297)
T cd06656          96 EYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE----  168 (297)
T ss_pred             cccCCCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccCC----
Confidence            999999999987653   5889999999999999999999999999999999999999999999999987431100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              ........
T Consensus       169 ------------------------------------------------------------------------~~~~~~~~  176 (297)
T cd06656         169 ------------------------------------------------------------------------QSKRSTMV  176 (297)
T ss_pred             ------------------------------------------------------------------------ccCcCccc
Confidence                                                                                    00001236


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-cccCCCCCCCChhHHHHHHhhhcCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-QLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      |++.|+|||.+.+..++.++|+|||||++|+|++|+.||.+.+....+..+... ..........+..+++||.+||..|
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  256 (297)
T cd06656         177 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMD  256 (297)
T ss_pred             CCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCC
Confidence            889999999999998999999999999999999999999876654444443322 2222233456788999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      |++||+    +.++++||||+..
T Consensus       257 p~~Rps----~~~il~~~~~~~~  275 (297)
T cd06656         257 VDRRGS----AKELLQHPFLKLA  275 (297)
T ss_pred             hhhCcC----HHHHhcCchhccc
Confidence            999999    7999999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=1.8e-41  Score=353.88  Aligned_cols=256  Identities=28%  Similarity=0.466  Sum_probs=207.6

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||.||+|+++.+++.||+|++.+.... ......+.+|+.+++.++||||++++++|+.+..+|+||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   79 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDD-PVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVF   79 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccC-ccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEE
Confidence            4699999999999999999999999999999998654321 122345678999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++++.|..++...  ..+++..++.++.||+.||+|||++||+||||||+||+++.++++||+|||++......    
T Consensus        80 e~~~~~~l~~~~~~~--~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~----  153 (286)
T cd07847          80 EYCDHTVLNELEKNP--RGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGP----  153 (286)
T ss_pred             eccCccHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCCC----
Confidence            999999888766543  46899999999999999999999999999999999999999999999999998432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              ........
T Consensus       154 ------------------------------------------------------------------------~~~~~~~~  161 (286)
T cd07847         154 ------------------------------------------------------------------------GDDYTDYV  161 (286)
T ss_pred             ------------------------------------------------------------------------cccccCcc
Confidence                                                                                    00001235


Q ss_pred             cCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-------------------ccccCCC
Q 004790          571 GTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-------------------QQLRFPD  630 (730)
Q Consensus       571 GT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-------------------~~~~~p~  630 (730)
                      ++..|+|||++.+. .++.++|||||||++|||++|+.||.+....+.+..+..                   .....+.
T Consensus       162 ~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (286)
T cd07847         162 ATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPE  241 (286)
T ss_pred             cccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCC
Confidence            78899999999874 478999999999999999999999987655433322110                   0000111


Q ss_pred             ----------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          631 ----------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       631 ----------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                                ....+..+.+||.+||..||++||+    +.+++.||||
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~----~~eil~~~~f  286 (286)
T cd07847         242 PETREPLESKFPNISSPALSFLKGCLQMDPTERLS----CEELLEHPYF  286 (286)
T ss_pred             cccccCHHHHhccCCHHHHHHHHHHhcCCccccCC----HHHHhcCCCC
Confidence                      1245788999999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=1.5e-41  Score=355.54  Aligned_cols=256  Identities=29%  Similarity=0.444  Sum_probs=212.2

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      .|++++.||.|+||.||++++..++..+|+|.+....   ......+.+|+++++.++||||++++++|..+...|+|||
T Consensus         6 ~~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e   82 (282)
T cd06643           6 FWEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKS---EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIE   82 (282)
T ss_pred             HHHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCC---HHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEE
Confidence            3788899999999999999999999999999986543   2345667889999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+++++|..++.+. ...+++..+..++.||+.||.|||+.||+||||||+|||++.++.+||+|||++.....      
T Consensus        83 ~~~~~~l~~~~~~~-~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~------  155 (282)
T cd06643          83 FCAGGAVDAVMLEL-ERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTR------  155 (282)
T ss_pred             ecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEccccccccccc------
Confidence            99999998866542 24689999999999999999999999999999999999999999999999999843210      


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                            .........|
T Consensus       156 ----------------------------------------------------------------------~~~~~~~~~~  165 (282)
T cd06643         156 ----------------------------------------------------------------------TIQRRDSFIG  165 (282)
T ss_pred             ----------------------------------------------------------------------cccccccccc
Confidence                                                                                  0001113468


Q ss_pred             CcccCChhhhc-----cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-ccCCCCCCCChhHHHHHHhh
Q 004790          572 THEYLAPEIIK-----GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-LRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       572 T~~Y~APEvl~-----g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-~~~p~~~~~s~~~~dLI~~l  645 (730)
                      |+.|+|||++.     +..++.++|||||||++|||++|+.||...+....+.++.... ...+....++.++++||.+|
T Consensus       166 ~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  245 (282)
T cd06643         166 TPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKC  245 (282)
T ss_pred             cccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHH
Confidence            99999999984     3457789999999999999999999998766544444443222 12233345788999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |..||++||+    ++++++||||..
T Consensus       246 l~~~p~~Rp~----~~~il~~~~~~~  267 (282)
T cd06643         246 LEKNVDARWT----TTQLLQHPFVTV  267 (282)
T ss_pred             ccCChhhCcC----HHHHhcCCCEec
Confidence            9999999999    699999999985

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=9.4e-42  Score=360.24  Aligned_cols=244  Identities=15%  Similarity=0.187  Sum_probs=203.4

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc----cceeeEEeee
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET----DRFSCLVMEY  412 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~----~~~l~LVmEy  412 (730)
                      ..||+|++|.||+|.+  +++.||||++++.........+.+.+|+.+|+.++||||+++++++.+    ...+|+||||
T Consensus        26 ~~i~~g~~~~v~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey  103 (283)
T PHA02988         26 VLIKENDQNSIYKGIF--NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEY  103 (283)
T ss_pred             eEEeeCCceEEEEEEE--CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEe
Confidence            5799999999999998  577899999987654444556778899999999999999999999876    4578999999


Q ss_pred             cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          413 CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       413 ~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      ++||+|..++...  ..+++..+..++.|++.||.|||. .+++||||||+|||++.++.+||+|||+++.+..      
T Consensus       104 ~~~g~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~------  175 (283)
T PHA02988        104 CTRGYLREVLDKE--KDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSS------  175 (283)
T ss_pred             CCCCcHHHHHhhC--CCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhhhcc------
Confidence            9999999988764  568889999999999999999998 5999999999999999999999999999843210      


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                               .....+|
T Consensus       176 -------------------------------------------------------------------------~~~~~~~  182 (283)
T PHA02988        176 -------------------------------------------------------------------------PPFKNVN  182 (283)
T ss_pred             -------------------------------------------------------------------------ccccccC
Confidence                                                                                     0012368


Q ss_pred             CcccCChhhhcc--CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          572 THEYLAPEIIKG--EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       572 T~~Y~APEvl~g--~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      |..|+|||++.+  ..++.++|||||||++|||++|+.||.+.+..+.+..++....+++.....+.++++||.+||+.|
T Consensus       183 ~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~d  262 (283)
T PHA02988        183 FMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHD  262 (283)
T ss_pred             cccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCC
Confidence            899999999987  678999999999999999999999999876655555554444444444467899999999999999


Q ss_pred             CCCcCCchhcHHHH
Q 004790          650 PQHRLGVKRGATEI  663 (730)
Q Consensus       650 P~~R~t~~~~a~el  663 (730)
                      |++||++.+....+
T Consensus       263 p~~Rps~~ell~~l  276 (283)
T PHA02988        263 SIKRPNIKEILYNL  276 (283)
T ss_pred             cccCcCHHHHHHHH
Confidence            99999964443333

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=3.9e-41  Score=346.24  Aligned_cols=256  Identities=25%  Similarity=0.440  Sum_probs=216.2

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++++.||+|+||.||+++...+++.||+|.+....... .....+.+|+.+++.++||||++++++|+...+.|+|||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSP-KEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMD   79 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCCh-HHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEe
Confidence            5899999999999999999999999999999997654332 334568899999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+.+++|..++.......+++.++..++.||+.||.|||++|++|+||+|+|||++.++.++|+|||++.....      
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~------  153 (256)
T cd08218          80 YCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNS------  153 (256)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCc------
Confidence            99999999887765445688999999999999999999999999999999999999999999999998843100      


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                            .........|
T Consensus       154 ----------------------------------------------------------------------~~~~~~~~~~  163 (256)
T cd08218         154 ----------------------------------------------------------------------TVELARTCIG  163 (256)
T ss_pred             ----------------------------------------------------------------------chhhhhhccC
Confidence                                                                                  0000112468


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQ  651 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~  651 (730)
                      ++.|+|||++.+..++.++|+|||||++|+|++|+.||...+..+.+..++.+... +.....+.++.++|.+||..+|.
T Consensus       164 ~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~  242 (256)
T cd08218         164 TPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYP-PVSSHYSYDLRNLVSQLFKRNPR  242 (256)
T ss_pred             CccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHHHHHHHhcCCCC-CCcccCCHHHHHHHHHHhhCChh
Confidence            89999999999988999999999999999999999999876555444444433322 22345788999999999999999


Q ss_pred             CcCCchhcHHHHHcCCCC
Q 004790          652 HRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       652 ~R~t~~~~a~elL~HPfF  669 (730)
                      +||+    +.++++||||
T Consensus       243 ~Rp~----~~~vl~~~~~  256 (256)
T cd08218         243 DRPS----VNSILEKNFI  256 (256)
T ss_pred             hCcC----HHHHhhCcCC
Confidence            9999    7999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=4.7e-41  Score=348.61  Aligned_cols=279  Identities=37%  Similarity=0.640  Sum_probs=224.6

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeEE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~LV  409 (730)
                      ++|.+.+.||+|+||.||++++..++..||+|++.+...........+.+|+++++.++ ||||++++++|.++..+|+|
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            47999999999999999999999999999999998766555555677889999999998 99999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+++++|.+++.+.  ..+++..++.++.||+.||.|||++|++|+||||+||+++.+|+++|+|||++........ 
T Consensus        81 ~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~-  157 (280)
T cd05581          81 LEYAPNGELLQYIRKY--GSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSS-  157 (280)
T ss_pred             EcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccCCccc-
Confidence            9999999999988765  4799999999999999999999999999999999999999999999999999854311000 


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                               .....     .+....                         .............+
T Consensus       158 -------------------------~~~~~-----~~~~~~-------------------------~~~~~~~~~~~~~~  182 (280)
T cd05581         158 -------------------------PESNK-----GDATNI-------------------------DSQIEKNRRRFASF  182 (280)
T ss_pred             -------------------------cccCC-----CCCccc-------------------------cccccccccccccc
Confidence                                     00000     000000                         00000011223456


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      .|+..|+|||++.+..++.++|+|||||++|+|++|+.||........+..+......++  ..++..+.+||++||..|
T Consensus       183 ~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~  260 (280)
T cd05581         183 VGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSFP--PNFPPDAKDLIEKLLVLD  260 (280)
T ss_pred             cCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhcCCCCC--CccCHHHHHHHHHHhcCC
Confidence            889999999999988899999999999999999999999987765444444443333333  456889999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF  669 (730)
                      |.+||++..+.+++++||||
T Consensus       261 p~~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         261 PQDRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             HhhCCCcccCHHHHhcCCCC
Confidence            99999954444999999998

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=4.1e-41  Score=347.89  Aligned_cols=261  Identities=24%  Similarity=0.377  Sum_probs=211.8

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhh---hhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL---ASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~---~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      +|+..+.||+|+||.||++.+..+++.||+|++.....   ........+.+|+.+|+.++||||+++++++.+...+++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            47888999999999999999999999999999975432   122345778899999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC-ceEEecccccccccCCC
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG-HIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g-~vKL~DFGlA~~~~~~~  487 (730)
                      ||||++|++|.+++.+.  +.+++..++.++.||+.||.|||++||+||||||+||+++.++ .+||+|||++.......
T Consensus        81 v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~  158 (268)
T cd06630          81 FVEWMAGGSVSHLLSKY--GAFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKG  158 (268)
T ss_pred             EEeccCCCcHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccccccccccccc
Confidence            99999999999988764  5689999999999999999999999999999999999998776 59999999985431100


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                      .  .                                                                      ......
T Consensus       159 ~--~----------------------------------------------------------------------~~~~~~  166 (268)
T cd06630         159 T--G----------------------------------------------------------------------AGEFQG  166 (268)
T ss_pred             c--c----------------------------------------------------------------------CCcccc
Confidence            0  0                                                                      000011


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeee---ecccccCCCCCCCChhHHHHHHh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV---VGQQLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i---~~~~~~~p~~~~~s~~~~dLI~~  644 (730)
                      ...||..|+|||++.+..++.++|+|||||++|+|++|..||...........+   .............+.+++++|.+
T Consensus       167 ~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  246 (268)
T cd06630         167 QLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLR  246 (268)
T ss_pred             ccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccCCCCCCchhhCHHHHHHHHH
Confidence            346899999999999988999999999999999999999999754332222111   11111122223567899999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      ||..||.+||+    +.++++||||+
T Consensus       247 ~l~~~p~~R~~----~~~ll~~~~~~  268 (268)
T cd06630         247 CLELQPEDRPP----SRELLKHPVFR  268 (268)
T ss_pred             HcCCCcccCcC----HHHHhcCcccC
Confidence            99999999999    79999999995

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=2.8e-41  Score=358.94  Aligned_cols=251  Identities=25%  Similarity=0.370  Sum_probs=189.8

Q ss_pred             EeEEccCCcEEEEEEEECC--CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc--ccceeeEEee
Q 004790          336 LKRLGCGDIGSVYLSELSS--TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE--TDRFSCLVME  411 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~--t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~--~~~~l~LVmE  411 (730)
                      ..+||+|+||+||+|+++.  ++..||+|.+.....     ...+.+|+++|+.++||||++++++|.  .+..+|+|||
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~-----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e   80 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI-----SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFD   80 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCC-----cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEe
Confidence            4689999999999999754  567899999875432     224678999999999999999999884  4678899999


Q ss_pred             ecCCCCcccccccc-------CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe----cCCCceEEeccccc
Q 004790          412 YCPGGDLHTLRQRQ-------PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV----RDDGHIMLSDFDLS  480 (730)
Q Consensus       412 y~~GGsL~~ll~~~-------~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl----~~~g~vKL~DFGlA  480 (730)
                      |+. ++|..++...       ....+++..++.++.||+.||.|||++||+||||||+|||+    +.++.+||+|||++
T Consensus        81 ~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a  159 (317)
T cd07867          81 YAE-HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFA  159 (317)
T ss_pred             eeC-CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccce
Confidence            995 5676654321       12358899999999999999999999999999999999999    56689999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +.......                                                                        
T Consensus       160 ~~~~~~~~------------------------------------------------------------------------  167 (317)
T cd07867         160 RLFNSPLK------------------------------------------------------------------------  167 (317)
T ss_pred             eccCCCcc------------------------------------------------------------------------
Confidence            54210000                                                                        


Q ss_pred             cccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccce---------e---eeec----
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---------F---NVVG----  623 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l---------~---~i~~----  623 (730)
                       ........+||+.|+|||++.+. .++.++|||||||++|||++|++||.........         .   ..+.    
T Consensus       168 -~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (317)
T cd07867         168 -PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPAD  246 (317)
T ss_pred             -cccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCCh
Confidence             00011235789999999999875 4789999999999999999999999754321100         0   0000    


Q ss_pred             -------ccccC----------------------CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          624 -------QQLRF----------------------PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       624 -------~~~~~----------------------p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                             ....+                      ......+..+.+||.+||..||.+|||    ++|+|+||||
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~t----~~e~l~hp~f  317 (317)
T cd07867         247 KDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRIT----SEQALQDPYF  317 (317)
T ss_pred             hhhhhhhhcccchhhhhhhcccccCCchhhhhhhcccCCCChHHHHHHHHHhccCcccccC----HHHHhcCCCC
Confidence                   00000                      001123556889999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=4.6e-41  Score=345.68  Aligned_cols=256  Identities=29%  Similarity=0.436  Sum_probs=218.3

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++++.||.|+||.||.++...+++.+++|.+....... .....+.+|+++|+.++|+||++++++|.+...+++|||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e   79 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSE-KERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEME   79 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccch-hHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEE
Confidence            5999999999999999999999999999999987654333 344567899999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+++++|.+++.+.....+++..+..++.|++.||.|||+.|++||||||+||+++.++.+||+|||++.......    
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~----  155 (256)
T cd08221          80 YANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEY----  155 (256)
T ss_pred             ecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEccccc----
Confidence            9999999998876655678999999999999999999999999999999999999999999999999984321000    


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                              .......|
T Consensus       156 ------------------------------------------------------------------------~~~~~~~~  163 (256)
T cd08221         156 ------------------------------------------------------------------------SMAETVVG  163 (256)
T ss_pred             ------------------------------------------------------------------------ccccccCC
Confidence                                                                                    00112468


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQ  651 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~  651 (730)
                      |+.|+|||++.+..++.++|+|||||++|||++|..||.+....+....+....+.. .....+.++.++|.+||..||.
T Consensus       164 ~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~l~~~p~  242 (256)
T cd08221         164 TPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTP-VVSVYSSELISLVHSLLQQDPE  242 (256)
T ss_pred             CccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCC-CccccCHHHHHHHHHHcccCcc
Confidence            999999999998889999999999999999999999998766555554554443332 2255788999999999999999


Q ss_pred             CcCCchhcHHHHHcCCCC
Q 004790          652 HRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       652 ~R~t~~~~a~elL~HPfF  669 (730)
                      +||+    +.++++|+|+
T Consensus       243 ~R~s----~~~ll~~~~l  256 (256)
T cd08221         243 KRPT----ADEVLDQPLL  256 (256)
T ss_pred             cCCC----HHHHhhCcCC
Confidence            9999    7999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.5e-43  Score=381.88  Aligned_cols=254  Identities=28%  Similarity=0.385  Sum_probs=226.4

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      -|.-++.||.|+||.||.|++..+...||||.|.-..-...++...+..|+..|+.++|||+|.+.++|-.+...|||||
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME  106 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME  106 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence            37778999999999999999999999999999988777788888999999999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      || -|+-.+++..+ .+++.|..+..|+.+.+.||.|||+++.||||||..|||+.+.|.|||+|||.|...        
T Consensus       107 YC-lGSAsDlleVh-kKplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~--------  176 (948)
T KOG0577|consen  107 YC-LGSASDLLEVH-KKPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIM--------  176 (948)
T ss_pred             HH-hccHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhc--------
Confidence            99 77777877765 367999999999999999999999999999999999999999999999999987221        


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                              ....+|+|
T Consensus       177 ------------------------------------------------------------------------~PAnsFvG  184 (948)
T KOG0577|consen  177 ------------------------------------------------------------------------APANSFVG  184 (948)
T ss_pred             ------------------------------------------------------------------------CchhcccC
Confidence                                                                                    11247899


Q ss_pred             CcccCChhhhcc---CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          572 THEYLAPEIIKG---EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       572 T~~Y~APEvl~g---~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      ||.|||||+|..   ..|+-++|||||||++.||...++|+...+.+..++.|.....+.-....++..+++||..||.+
T Consensus       185 TPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesPtLqs~eWS~~F~~Fvd~CLqK  264 (948)
T KOG0577|consen  185 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQK  264 (948)
T ss_pred             CccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhh
Confidence            999999999974   45899999999999999999999999888888888777655444444567899999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      -|++|||    .+++|.|+|...
T Consensus       265 ipqeRpt----se~ll~H~fv~R  283 (948)
T KOG0577|consen  265 IPQERPT----SEELLKHRFVLR  283 (948)
T ss_pred             CcccCCc----HHHHhhcchhcc
Confidence            9999999    799999999765

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=3.3e-41  Score=357.41  Aligned_cols=256  Identities=25%  Similarity=0.393  Sum_probs=214.8

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      .+|++++.||.|+||.||++.+..++..||+|.+......   ....+.+|+.+++.++||||+++++.|..+...|+||
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~---~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~   96 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP---KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   96 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcc---hHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEee
Confidence            6899999999999999999999999999999999765432   2355788999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++|++|..++..   ..+++.++..++.||+.||.|||++||+||||||+|||++.++.+||+|||++......    
T Consensus        97 e~~~~~~L~~~~~~---~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~----  169 (296)
T cd06654          97 EYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE----  169 (296)
T ss_pred             cccCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhcccc----
Confidence            99999999998764   35889999999999999999999999999999999999999999999999987431100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              ........
T Consensus       170 ------------------------------------------------------------------------~~~~~~~~  177 (296)
T cd06654         170 ------------------------------------------------------------------------QSKRSTMV  177 (296)
T ss_pred             ------------------------------------------------------------------------ccccCccc
Confidence                                                                                    00011236


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-ccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-QQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      |++.|+|||.+.+..++.++|+|||||++|+|++|+.||........+..+.. .....+....++..+.+||.+||..|
T Consensus       178 ~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~  257 (296)
T cd06654         178 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMD  257 (296)
T ss_pred             CCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCC
Confidence            88999999999998899999999999999999999999987655433332221 11222233457788999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      |++||+    +.++++||||...
T Consensus       258 p~~Rpt----~~eil~~~~~~~~  276 (296)
T cd06654         258 VEKRGS----AKELLQHQFLKIA  276 (296)
T ss_pred             cccCcC----HHHHhhChhhhcc
Confidence            999999    7999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=5.1e-41  Score=344.33  Aligned_cols=255  Identities=27%  Similarity=0.430  Sum_probs=215.1

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++++.||+|+||.||++.+..++..+|+|++....... .....+.+|+++|+.++||||+++++.+..+..+|+|||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTK-DERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVME   79 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEecccccc-HHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEe
Confidence            5899999999999999999999999999999998765433 345678899999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC-CceEEecccccccccCCCccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD-GHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~-g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |++|++|.+++....+..+++..++.++.||+.||.|||++||+||||||+||+++.+ +.+||+|||++......    
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~----  155 (256)
T cd08220          80 YAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSK----  155 (256)
T ss_pred             cCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCC----
Confidence            9999999998876555668999999999999999999999999999999999999865 46899999998432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                               .......
T Consensus       156 -------------------------------------------------------------------------~~~~~~~  162 (256)
T cd08220         156 -------------------------------------------------------------------------SKAYTVV  162 (256)
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0001236


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      |+..|+|||.+.+..++.++|+|||||++|+|++|+.||.+.+.......+..... .+.....+.++++||.+||..||
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~~p  241 (256)
T cd08220         163 GTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGTF-APISDRYSPDLRQLILSMLNLDP  241 (256)
T ss_pred             cCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchHHHHHHHHhcCC-CCCCCCcCHHHHHHHHHHccCCh
Confidence            88999999999998899999999999999999999999987665444444333222 12233578899999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF  669 (730)
                      ++||+    +.++++||||
T Consensus       242 ~~Rpt----~~~ll~~p~~  256 (256)
T cd08220         242 SKRPQ----LSQIMAQPIC  256 (256)
T ss_pred             hhCCC----HHHHhhCCCC
Confidence            99999    7999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=2.8e-41  Score=355.42  Aligned_cols=270  Identities=21%  Similarity=0.286  Sum_probs=213.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      +..++|++++.||+|+||.||+|.++.     .+..||+|.++....  ......+.+|+.+++.++||||+++++++.+
T Consensus         3 ~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   80 (288)
T cd05061           3 VSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESAS--LRERIEFLNEASVMKGFTCHHVVRLLGVVSK   80 (288)
T ss_pred             ccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCC--HHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            456789999999999999999997653     355799999865432  2233457789999999999999999999999


Q ss_pred             cceeeEEeeecCCCCccccccccC--------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEE
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQP--------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIML  474 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~--------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL  474 (730)
                      ....|+||||+++|+|.+++....        ...++...++.++.||+.||.|||++||+||||||+|||++.++.++|
T Consensus        81 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L  160 (288)
T cd05061          81 GQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKI  160 (288)
T ss_pred             CCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEE
Confidence            999999999999999999886431        123456678889999999999999999999999999999999999999


Q ss_pred             ecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCC
Q 004790          475 SDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTL  554 (730)
Q Consensus       475 ~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (730)
                      +|||+++.......                                                                  
T Consensus       161 ~Dfg~~~~~~~~~~------------------------------------------------------------------  174 (288)
T cd05061         161 GDFGMTRDIYETDY------------------------------------------------------------------  174 (288)
T ss_pred             CcCCcccccccccc------------------------------------------------------------------
Confidence            99999853210000                                                                  


Q ss_pred             cccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCC
Q 004790          555 PELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPA  633 (730)
Q Consensus       555 ~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~  633 (730)
                              ........++..|+|||.+.+..++.++|+|||||++|||++ |..||.+....+.+..+..+. ..+....
T Consensus       175 --------~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~  245 (288)
T cd05061         175 --------YRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGG-YLDQPDN  245 (288)
T ss_pred             --------ccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC-CCCCCCC
Confidence                    000011246778999999999899999999999999999998 899998765544433333222 1222335


Q ss_pred             CChhHHHHHHhhhcCCCCCcCCchhcHHHHHc--CCCCCCCCc
Q 004790          634 TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ--HPFFEGVNW  674 (730)
Q Consensus       634 ~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~--HPfF~~v~w  674 (730)
                      .+..+++||.+||..||++||++.+..+.+..  ||||.+++|
T Consensus       246 ~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~~~~~  288 (288)
T cd05061         246 CPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSF  288 (288)
T ss_pred             CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcCCCCCCCCC
Confidence            67899999999999999999997655555554  999999998

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=2.1e-41  Score=353.91  Aligned_cols=256  Identities=29%  Similarity=0.446  Sum_probs=207.9

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++++.||.|+||.||+|++..++..||||.++.... .......+.+|+++++.++||||++++++++++...|+|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   79 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   79 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEcccccc-ccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEee
Confidence            48999999999999999999999999999999865432 22233567889999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+. ++|..++.......+++..++.++.||+.||+|||++|++||||||+||+++.++.+||+|||++.......    
T Consensus        80 ~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~----  154 (284)
T cd07860          80 FLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV----  154 (284)
T ss_pred             ccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCc----
Confidence            995 688887766555678999999999999999999999999999999999999999999999999874321000    


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                              .......+
T Consensus       155 ------------------------------------------------------------------------~~~~~~~~  162 (284)
T cd07860         155 ------------------------------------------------------------------------RTYTHEVV  162 (284)
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    00012256


Q ss_pred             CcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc------------------cccCCC--
Q 004790          572 THEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ------------------QLRFPD--  630 (730)
Q Consensus       572 T~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~------------------~~~~p~--  630 (730)
                      ++.|+|||++.+.. ++.++|||||||++|||++|+.||.+.+....+.++...                  ...++.  
T Consensus       163 ~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (284)
T cd07860         163 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWA  242 (284)
T ss_pred             cccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhccccc
Confidence            88999999987755 588999999999999999999999876543333222110                  001111  


Q ss_pred             -------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          631 -------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       631 -------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                             .+.++.++++||.+||..||.+||+    ++++++||||
T Consensus       243 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt----~~~~l~~~~f  284 (284)
T cd07860         243 RQDFSKVVPPLDEDGRDLLSQMLHYDPNKRIS----AKAALAHPFF  284 (284)
T ss_pred             ccCHHHHcccCCHHHHHHHHHhcCCCcccCCC----HHHHhcCCCC
Confidence                   1346788999999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-41  Score=391.85  Aligned_cols=274  Identities=28%  Similarity=0.387  Sum_probs=223.1

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccc-cc-
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHF-ET-  402 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f-~~-  402 (730)
                      -.++..++++.+.|.+|||+.||+|++...+..||+|.+-..   ++..++.+.+|+++|++|. |+|||.+++.. .. 
T Consensus        32 ~~Vg~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~---de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~  108 (738)
T KOG1989|consen   32 FTVGSHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN---DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINR  108 (738)
T ss_pred             EEECCEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC---CHHHHHHHHHHHHHHHHhcCCCceeeEeccccccc
Confidence            357778899999999999999999999998889999987543   5577888999999999995 99999999933 21 


Q ss_pred             -----cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc--eeecccCCccEEecCCCceEEe
Q 004790          403 -----DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG--VVYRDLKPENVLVRDDGHIMLS  475 (730)
Q Consensus       403 -----~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g--IVHRDLKPeNILl~~~g~vKL~  475 (730)
                           .-.++|.||||.||.|-+++..+-...|+|.++..|++|+++||.+||.+.  |||||||-|||||..+|+.|||
T Consensus       109 ~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLC  188 (738)
T KOG1989|consen  109 SSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLC  188 (738)
T ss_pred             cCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeC
Confidence                 235789999999999999887554566999999999999999999999998  9999999999999999999999


Q ss_pred             cccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCc
Q 004790          476 DFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLP  555 (730)
Q Consensus       476 DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (730)
                      |||.|......++-                                             .                 .-.
T Consensus       189 DFGSatt~~~~~~~---------------------------------------------~-----------------~e~  206 (738)
T KOG1989|consen  189 DFGSATTKILSPTS---------------------------------------------A-----------------QEV  206 (738)
T ss_pred             cccccccccCCCcc---------------------------------------------H-----------------HHH
Confidence            99988432111110                                             0                 000


Q ss_pred             ccccccccccccccccCcccCChhhh---ccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCC
Q 004790          556 ELVAEPTAARSMSFVGTHEYLAPEII---KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSP  632 (730)
Q Consensus       556 ~~~~e~~~~~~~s~vGT~~Y~APEvl---~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~  632 (730)
                      ..+.+     ......|+.|+|||+|   .+.+.+.|+|||+|||+||.|++..+||...+.    .+|+++.+.||..+
T Consensus       207 ~~ve~-----eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~----laIlng~Y~~P~~p  277 (738)
T KOG1989|consen  207 NYVEE-----EIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK----LAILNGNYSFPPFP  277 (738)
T ss_pred             HHHHH-----HHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc----eeEEeccccCCCCc
Confidence            01111     1122569999999998   477889999999999999999999999987543    57889999999999


Q ss_pred             CCChhHHHHHHhhhcCCCCCcCCchhcHHHHH----cCCCCCCCC
Q 004790          633 ATSYASRDLIRGLLVKEPQHRLGVKRGATEIK----QHPFFEGVN  673 (730)
Q Consensus       633 ~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL----~HPfF~~v~  673 (730)
                      .++..+++||+.||+.||.+||+|-....++.    .+.++.++.
T Consensus       278 ~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~~~~~~~~  322 (738)
T KOG1989|consen  278 NYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKPCPIPDIY  322 (738)
T ss_pred             cHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCCCCccccc
Confidence            99999999999999999999999744333332    457777665

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.5e-41  Score=348.12  Aligned_cols=256  Identities=30%  Similarity=0.452  Sum_probs=209.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccc-----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETD-----  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~-----  403 (730)
                      .++|++++.||.|+||.||+|.++.+++.+|+|++.....    ....+.+|+.+++.+ +||||++++++|.+.     
T Consensus         5 ~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~   80 (275)
T cd06608           5 TGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED----EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGN   80 (275)
T ss_pred             hhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch----hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCc
Confidence            4689999999999999999999999999999999876532    235678999999998 799999999999654     


Q ss_pred             -ceeeEEeeecCCCCccccccccC--CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          404 -RFSCLVMEYCPGGDLHTLRQRQP--GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       404 -~~l~LVmEy~~GGsL~~ll~~~~--~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                       ..+|+||||+++++|.+++....  ...+++..++.++.||+.||.|||++||+|+||+|+||+++.++.+||+|||++
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~  160 (275)
T cd06608          81 DDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVS  160 (275)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccc
Confidence             45899999999999998876543  467899999999999999999999999999999999999999999999999987


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ......                                                                          
T Consensus       161 ~~~~~~--------------------------------------------------------------------------  166 (275)
T cd06608         161 AQLDST--------------------------------------------------------------------------  166 (275)
T ss_pred             eecccc--------------------------------------------------------------------------
Confidence            432100                                                                          


Q ss_pred             cccccccccccCcccCChhhhccC-----CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-cCCCCCCC
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGE-----GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-RFPDSPAT  634 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~-----~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-~~p~~~~~  634 (730)
                        ........|++.|+|||++...     .++.++|+|||||+||+|++|+.||........+..+..... .......+
T Consensus       167 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (275)
T cd06608         167 --LGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKIPRNPPPTLKSPENW  244 (275)
T ss_pred             --hhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHHHHHHhhccCCCCCCchhhc
Confidence              0011124689999999998643     367889999999999999999999986655444444433221 12222336


Q ss_pred             ChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          635 SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       635 s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      +.++++||++||..||++||+    +.++++|||+
T Consensus       245 ~~~~~~li~~~l~~dp~~Rpt----~~~ll~~~~~  275 (275)
T cd06608         245 SKKFNDFISECLIKNYEQRPF----MEELLEHPFI  275 (275)
T ss_pred             CHHHHHHHHHHhhcChhhCcC----HHHHhcCCCC
Confidence            789999999999999999999    7999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=3.7e-41  Score=352.87  Aligned_cols=257  Identities=26%  Similarity=0.402  Sum_probs=209.7

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||.||++++..++..||+|.+....  .......+.+|+++|+.++||||+++++.|..+..+|+||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   78 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLEL--DESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCM   78 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeeccc--CHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEE
Confidence            36899999999999999999999999999999986532  2234467889999999999999999999999999999999


Q ss_pred             eecCCCCcccccccc-CCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          411 EYCPGGDLHTLRQRQ-PGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~-~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||++|++|..++... ....+++..++.++.||+.||.|||. .||+||||||+|||++.++.+||+|||++.....   
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~---  155 (286)
T cd06622          79 EYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVA---  155 (286)
T ss_pred             eecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCcccccC---
Confidence            999999998877653 12368999999999999999999996 6999999999999999999999999998743100   


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                 .....
T Consensus       156 ---------------------------------------------------------------------------~~~~~  160 (286)
T cd06622         156 ---------------------------------------------------------------------------SLAKT  160 (286)
T ss_pred             ---------------------------------------------------------------------------Ccccc
Confidence                                                                                       00012


Q ss_pred             cccCcccCChhhhccCC------CCCcceeechhHHHHHHhhCCCCCCCCCCccceee---eecccccCCCCCCCChhHH
Q 004790          569 FVGTHEYLAPEIIKGEG------HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN---VVGQQLRFPDSPATSYASR  639 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~------~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~---i~~~~~~~p~~~~~s~~~~  639 (730)
                      .+|++.|+|||++.+..      ++.++|+|||||++|+|++|+.||...........   +.... .......++.+++
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  239 (286)
T cd06622         161 NIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGD-PPTLPSGYSDDAQ  239 (286)
T ss_pred             CCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhhcC-CCCCCcccCHHHH
Confidence            35788999999996543      47899999999999999999999976543322211   11111 1122234789999


Q ss_pred             HHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          640 DLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      +||.+||..+|++||+    ++++++||||...
T Consensus       240 ~li~~~l~~~p~~Rp~----~~~l~~~~~~~~~  268 (286)
T cd06622         240 DFVAKCLNKIPNRRPT----YAQLLEHPWLVKY  268 (286)
T ss_pred             HHHHHHcccCcccCCC----HHHHhcChhhhhc
Confidence            9999999999999999    6899999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=9.5e-41  Score=349.35  Aligned_cols=258  Identities=26%  Similarity=0.401  Sum_probs=207.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccc-----c
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHF-----E  401 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f-----~  401 (730)
                      ...++|++++.||+|+||.||++++..+++.||+|++....    .....+.+|+.+++.+ +||||+++++++     .
T Consensus        15 ~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~----~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~   90 (286)
T cd06638          15 DPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH----DIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVK   90 (286)
T ss_pred             CcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc----chHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccC
Confidence            34578999999999999999999999999999999986532    1224567899999998 799999999987     3


Q ss_pred             ccceeeEEeeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccc
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL  479 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGl  479 (730)
                      .+..+|+||||++|++|..++...  ....+++..++.++.||+.||.|||+++|+||||||+||+++.++.+||+|||+
T Consensus        91 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~  170 (286)
T cd06638          91 NGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGV  170 (286)
T ss_pred             CCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEccCCc
Confidence            456799999999999998876432  235688999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccc
Q 004790          480 SLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVA  559 (730)
Q Consensus       480 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (730)
                      +......                                                                         
T Consensus       171 ~~~~~~~-------------------------------------------------------------------------  177 (286)
T cd06638         171 SAQLTST-------------------------------------------------------------------------  177 (286)
T ss_pred             eeecccC-------------------------------------------------------------------------
Confidence            8532100                                                                         


Q ss_pred             ccccccccccccCcccCChhhhcc-----CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-ccCCCCCC
Q 004790          560 EPTAARSMSFVGTHEYLAPEIIKG-----EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-LRFPDSPA  633 (730)
Q Consensus       560 e~~~~~~~s~vGT~~Y~APEvl~g-----~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-~~~p~~~~  633 (730)
                         ........||+.|+|||++..     ..++.++|||||||++|||++|+.||........+..+.... ........
T Consensus       178 ---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (286)
T cd06638         178 ---RLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPPTLHQPEL  254 (286)
T ss_pred             ---CCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHhhccccCCCcccCCCC
Confidence               000112368999999999863     447889999999999999999999998765544443332221 11222234


Q ss_pred             CChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          634 TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       634 ~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      .+..+++||.+||..||++||+    +.++++|+||
T Consensus       255 ~~~~~~~li~~~l~~~p~~Rps----~~ell~~~~~  286 (286)
T cd06638         255 WSNEFNDFIRKCLTKDYEKRPT----VSDLLQHVFI  286 (286)
T ss_pred             cCHHHHHHHHHHccCCcccCCC----HHHHhhcccC
Confidence            5778999999999999999999    7999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4.9e-41  Score=379.56  Aligned_cols=253  Identities=24%  Similarity=0.322  Sum_probs=201.9

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      ...|.+.+.||+|+||.||+|.+..+++.||||....         ..+.+|+++|+.|+|||||++++++..++..|||
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~---------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv  238 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY---------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLV  238 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc---------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEE
Confidence            4579999999999999999999999999999996432         2346799999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+ .++|..++... ...+++.+++.|+.||+.||.|||++|||||||||+||||+.++.+||+|||+++......  
T Consensus       239 ~e~~-~~~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~--  314 (461)
T PHA03211        239 LPKY-RSDLYTYLGAR-LRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSW--  314 (461)
T ss_pred             EEcc-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceeccccc--
Confidence            9999 57887776543 2469999999999999999999999999999999999999999999999999985321000  


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              .......+
T Consensus       315 ------------------------------------------------------------------------~~~~~~~~  322 (461)
T PHA03211        315 ------------------------------------------------------------------------STPFHYGI  322 (461)
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    00001135


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc-------cceeeeecc-cc---cCC---------
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-------ATLFNVVGQ-QL---RFP---------  629 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-------~~l~~i~~~-~~---~~p---------  629 (730)
                      +||+.|+|||++.+..++.++|||||||+||||++|..++......       ..+.+++.. ++   .++         
T Consensus       323 ~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~  402 (461)
T PHA03211        323 AGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVS  402 (461)
T ss_pred             CCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHH
Confidence            7999999999999999999999999999999999988765432211       111111111 00   000         


Q ss_pred             -----------------CC---CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          630 -----------------DS---PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       630 -----------------~~---~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                                       .+   ...+.++++||.+||..||.+||+    +.|+|+||||+.
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPs----a~elL~hp~f~~  460 (461)
T PHA03211        403 QYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPS----AAELLRLPLFQS  460 (461)
T ss_pred             HHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcC----HHHHhhCcccCC
Confidence                             01   134568899999999999999999    799999999974

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.6e-41  Score=385.82  Aligned_cols=269  Identities=22%  Similarity=0.333  Sum_probs=198.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCC-eEEEEE--------------EeehhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTR-CYFAMK--------------VMDKASLASRKKLTRAQTEREILQLLDHPF  392 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~-~~vAvK--------------vi~k~~~~~~~~~~~~~~E~~IL~~L~HPn  392 (730)
                      ...++|++++.||+|+||+||++.++... ..++.|              ++.+...........+++|+++|+.++|||
T Consensus       145 ~~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hpn  224 (501)
T PHA03210        145 EFLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHEN  224 (501)
T ss_pred             hhhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCC
Confidence            34578999999999999999999765432 122222              121211122234456789999999999999


Q ss_pred             CccccccccccceeeEEeeecCCCCccccccccC---CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC
Q 004790          393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQP---GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD  469 (730)
Q Consensus       393 IV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~---~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~  469 (730)
                      |+++++++++++..|+|||++ +++|..++....   ........++.|+.||+.||+|||++|||||||||+||||+.+
T Consensus       225 Iv~l~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~  303 (501)
T PHA03210        225 ILKIEEILRSEANTYMITQKY-DFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCD  303 (501)
T ss_pred             cCcEeEEEEECCeeEEEEecc-ccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCC
Confidence            999999999999999999999 566666543321   1233466788899999999999999999999999999999999


Q ss_pred             CceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCC
Q 004790          470 GHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGL  549 (730)
Q Consensus       470 g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (730)
                      |.+||+|||+++.+...                                                               
T Consensus       304 ~~vkL~DFGla~~~~~~---------------------------------------------------------------  320 (501)
T PHA03210        304 GKIVLGDFGTAMPFEKE---------------------------------------------------------------  320 (501)
T ss_pred             CCEEEEeCCCceecCcc---------------------------------------------------------------
Confidence            99999999998542100                                                               


Q ss_pred             CCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCC---ccceeeeecc--
Q 004790          550 PSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN---RATLFNVVGQ--  624 (730)
Q Consensus       550 ~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~---~~~l~~i~~~--  624 (730)
                                  .......++||+.|+|||++.+..++.++|||||||+||||++|..++.+...   ...+.+++..  
T Consensus       321 ------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~  388 (501)
T PHA03210        321 ------------REAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLS  388 (501)
T ss_pred             ------------cccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcc
Confidence                        00011235899999999999999999999999999999999998765433221   1111111100  


Q ss_pred             --cccCCC--------------------------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          625 --QLRFPD--------------------------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       625 --~~~~p~--------------------------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                        ...+|.                          ...++.++.++|.+||.+||.+||+    +.|+|+||||....+..
T Consensus       389 ~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rps----a~elL~hp~f~~~~~~~  464 (501)
T PHA03210        389 VCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPG----AAELLALPLFSAEEEEE  464 (501)
T ss_pred             cChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcC----HHHHhhChhhhcCCchH
Confidence              000110                          1134567889999999999999999    89999999999876653

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=5e-41  Score=350.50  Aligned_cols=257  Identities=31%  Similarity=0.499  Sum_probs=209.3

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++.+.||.|+||.||+|++..++..||+|++...... ......+.+|+.+++.++||||+++++++..+..+|+|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e   79 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLE-GGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVME   79 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEccccc-chhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEec
Confidence            589999999999999999999999999999999765432 2344668899999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+ +++|..++.... ..+++.+++.++.||+.||.|||++||+|+||||+||+++.++.++|+|||++.......    
T Consensus        80 ~~-~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~----  153 (286)
T cd07832          80 YM-PSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEE----  153 (286)
T ss_pred             cc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCC----
Confidence            99 999998876543 569999999999999999999999999999999999999999999999999884321000    


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                             ........|
T Consensus       154 -----------------------------------------------------------------------~~~~~~~~~  162 (286)
T cd07832         154 -----------------------------------------------------------------------PRLYSHQVA  162 (286)
T ss_pred             -----------------------------------------------------------------------CCccccccC
Confidence                                                                                   000112368


Q ss_pred             CcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-------------------ccccCCC-
Q 004790          572 THEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-------------------QQLRFPD-  630 (730)
Q Consensus       572 T~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-------------------~~~~~p~-  630 (730)
                      |..|+|||++.+.. ++.++|||||||++|||++|.+||.+..+...+..++.                   ....++. 
T Consensus       163 ~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (286)
T cd07832         163 TRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPES  242 (286)
T ss_pred             cccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCC
Confidence            99999999987654 68999999999999999999999977654332222111                   0001111 


Q ss_pred             --------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          631 --------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       631 --------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                              .+..+.++.+||++||.+||++||+    ++++++||||.
T Consensus       243 ~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~----~~~~l~h~~~~  286 (286)
T cd07832         243 KPIPLEEIFPDASPEALDLLKGLLVYDPSKRLS----AAEALRHPYFT  286 (286)
T ss_pred             CcchHHHhCCCccHHHHHHHHHHhccChhhCCC----HHHHhhCcCcC
Confidence                    1245688999999999999999999    79999999994

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=7e-41  Score=349.38  Aligned_cols=260  Identities=27%  Similarity=0.381  Sum_probs=205.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHH-HHhcCCCCCccccccccccceeeEE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI-LQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~I-L~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      ++|++++.||+|+||.||+++++.+++.||||++++..... .. ..+..|+.+ ++.++||||+++++++..+..+|+|
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~-~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv   78 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQ-EQ-KRLLMDLDISMRSVDCPYTVTFYGALFREGDVWIC   78 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcH-HH-HHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEE
Confidence            47999999999999999999999999999999997653222 22 234456554 6677999999999999999999999


Q ss_pred             eeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhc-ceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          410 MEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHML-GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~-gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |||++ |+|..++...  ....+++..++.++.||+.||.|||++ +++||||||+|||++.++.+||+|||++......
T Consensus        79 ~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~  157 (283)
T cd06617          79 MEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDS  157 (283)
T ss_pred             hhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecccccccccc
Confidence            99995 6776665432  235789999999999999999999997 9999999999999999999999999998432000


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       158 -----------------------------------------------------------------------------~~~  160 (283)
T cd06617         158 -----------------------------------------------------------------------------VAK  160 (283)
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         000


Q ss_pred             cccccCcccCChhhhcc----CCCCCcceeechhHHHHHHhhCCCCCCCCCC-ccceeeeeccc-ccCCCCCCCChhHHH
Q 004790          567 MSFVGTHEYLAPEIIKG----EGHGSAVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNVVGQQ-LRFPDSPATSYASRD  640 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g----~~~~~~sDIWSLG~iLyELltG~~PF~g~~~-~~~l~~i~~~~-~~~p~~~~~s~~~~d  640 (730)
                      ....|+..|+|||++.+    ..++.++|+|||||++|+|++|+.||..... .+.+..+.... ..++. ..++.++.+
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~  239 (283)
T cd06617         161 TIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEPSPQLPA-EKFSPEFQD  239 (283)
T ss_pred             ccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHHhcCCCCCCc-cccCHHHHH
Confidence            12367889999999875    4568899999999999999999999965322 22222322221 12222 346889999


Q ss_pred             HHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          641 LIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      ||.+||..+|++||+    +.++++||||+...+.
T Consensus       240 li~~~l~~~p~~Rp~----~~~il~~~~~~~~~~~  270 (283)
T cd06617         240 FVNKCLKKNYKERPN----YPELLQHPFFELHLSK  270 (283)
T ss_pred             HHHHHccCChhhCcC----HHHHhcCchhhhcccc
Confidence            999999999999999    6999999999986543

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=4e-41  Score=351.69  Aligned_cols=256  Identities=28%  Similarity=0.436  Sum_probs=207.6

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||.||+|.++.+++.||+|++.+..... ...+.+.+|+++|+.++||||++++++|.++...|+||
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   79 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDK-MVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVF   79 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcc-hhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEE
Confidence            46999999999999999999999999999999986643322 33456788999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+++++|..+....  ..+++.+++.++.||+.||.|||+.||+||||+|+||+++.++.++|+|||++......    
T Consensus        80 e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~----  153 (286)
T cd07846          80 EFVDHTVLDDLEKYP--NGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP----  153 (286)
T ss_pred             ecCCccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCC----
Confidence            999999888765543  45899999999999999999999999999999999999999999999999998432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              ........
T Consensus       154 ------------------------------------------------------------------------~~~~~~~~  161 (286)
T cd07846         154 ------------------------------------------------------------------------GEVYTDYV  161 (286)
T ss_pred             ------------------------------------------------------------------------ccccCccc
Confidence                                                                                    00011246


Q ss_pred             cCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-------------------ccccCC-
Q 004790          571 GTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-------------------QQLRFP-  629 (730)
Q Consensus       571 GT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-------------------~~~~~p-  629 (730)
                      |+..|+|||++.+. .++.++|||||||++|||++|++||.+....+.+..+..                   .....+ 
T Consensus       162 ~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (286)
T cd07846         162 ATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPE  241 (286)
T ss_pred             ceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhcccccc
Confidence            88999999999864 478899999999999999999999976543222111110                   000111 


Q ss_pred             ---------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          630 ---------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       630 ---------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                               ..+.++..+.+||++||..||++||+    +.++++||||
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~----~~~il~~~~~  286 (286)
T cd07846         242 VKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPS----SSQLLHHEFF  286 (286)
T ss_pred             ccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchh----HHHHhcCCCC
Confidence                     12356788999999999999999999    6899999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=5.7e-41  Score=355.85  Aligned_cols=256  Identities=26%  Similarity=0.413  Sum_probs=215.1

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      .+|++++.||.|+||.||++.+..+++.||+|.+.....   .....+.+|+.+++.++||||++++++|..+..+|+||
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   95 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQ---PKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVM   95 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccC---chHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEE
Confidence            569999999999999999999999999999999875432   23456788999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+++++|..++..   ..+++.++..++.|++.||+|||++|++||||||+||+++.++.+||+|||++......    
T Consensus        96 e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~----  168 (296)
T cd06655          96 EYLAGGSLTDVVTE---TCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPE----  168 (296)
T ss_pred             EecCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhcccc----
Confidence            99999999988764   36899999999999999999999999999999999999999999999999987432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              ........
T Consensus       169 ------------------------------------------------------------------------~~~~~~~~  176 (296)
T cd06655         169 ------------------------------------------------------------------------QSKRSTMV  176 (296)
T ss_pred             ------------------------------------------------------------------------cccCCCcC
Confidence                                                                                    00011236


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-cccCCCCCCCChhHHHHHHhhhcCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-QLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      |++.|+|||.+.+..++.++|+|||||++|+|++|+.||.+.+....+..+... ...+.....++..+++||++||..|
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  256 (296)
T cd06655         177 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMD  256 (296)
T ss_pred             CCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcC
Confidence            889999999999988999999999999999999999999876654443333221 1122233457889999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      |++||+    +.++++||||+..
T Consensus       257 p~~Rpt----~~~il~~~~~~~~  275 (296)
T cd06655         257 VEKRGS----AKELLQHPFLKLA  275 (296)
T ss_pred             hhhCCC----HHHHhhChHhhhc
Confidence            999999    7999999999854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=1.2e-40  Score=350.27  Aligned_cols=258  Identities=27%  Similarity=0.410  Sum_probs=208.6

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccc----
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETD----  403 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~----  403 (730)
                      ..++|++++.||+|+||.||++....+++.+|+|++....    .....+.+|+.+++.+ +||||++++++|...    
T Consensus        20 ~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~----~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~   95 (291)
T cd06639          20 PTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS----DVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLV   95 (291)
T ss_pred             CCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc----cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccC
Confidence            3578999999999999999999999999999999986542    1234567899999988 899999999988643    


Q ss_pred             -ceeeEEeeecCCCCccccccc--cCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          404 -RFSCLVMEYCPGGDLHTLRQR--QPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       404 -~~l~LVmEy~~GGsL~~ll~~--~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                       ..+|+||||++|++|.+++..  ..+..+++..++.++.||+.||.|||+.||+||||||+||+++.++.+||+|||++
T Consensus        96 ~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~  175 (291)
T cd06639          96 GGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVS  175 (291)
T ss_pred             CCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccc
Confidence             468999999999999887753  23357899999999999999999999999999999999999999999999999987


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ......                                                                          
T Consensus       176 ~~~~~~--------------------------------------------------------------------------  181 (291)
T cd06639         176 AQLTST--------------------------------------------------------------------------  181 (291)
T ss_pred             hhcccc--------------------------------------------------------------------------
Confidence            432100                                                                          


Q ss_pred             cccccccccccCcccCChhhhccCC-----CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-ccCCCCCCC
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEG-----HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-LRFPDSPAT  634 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~-----~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-~~~p~~~~~  634 (730)
                        ........|+..|+|||++....     ++.++|||||||++|||++|+.||........+..+.... ..+......
T Consensus       182 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (291)
T cd06639         182 --RLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPEKW  259 (291)
T ss_pred             --cccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHHHHhcCCCCCCCccccc
Confidence              00011236889999999986543     6789999999999999999999998765544444433221 122223346


Q ss_pred             ChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          635 SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       635 s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      +..+.+||.+||.+||++||+    +.++++||||+
T Consensus       260 ~~~l~~li~~~l~~~p~~Rps----~~~il~~~~~~  291 (291)
T cd06639         260 CRSFNHFISQCLIKDFEARPS----VTHLLEHPFIK  291 (291)
T ss_pred             CHHHHHHHHHHhhcChhhCcC----HHHHhcCcccC
Confidence            678999999999999999999    79999999995

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=3.1e-41  Score=371.04  Aligned_cols=254  Identities=19%  Similarity=0.272  Sum_probs=204.5

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCC-----CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSST-----RCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFE  401 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t-----~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~  401 (730)
                      +..++|++.+.||+|+||.||+|++..+     +..||||+++....  ......+.+|+++|+.+ +||||++++++|.
T Consensus        35 ~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~  112 (374)
T cd05106          35 FPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAH--TDEREALMSELKILSHLGQHKNIVNLLGACT  112 (374)
T ss_pred             ccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCC--HHHHHHHHHHHHHHHhhccCCceeeEeeEec
Confidence            4567899999999999999999986443     35799999975432  23456688999999999 8999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccC-------------------------------------------------------
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQP-------------------------------------------------------  426 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~-------------------------------------------------------  426 (730)
                      ....+|+|||||++|+|.+++....                                                       
T Consensus       113 ~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (374)
T cd05106         113 HGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSS  192 (374)
T ss_pred             CCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccc
Confidence            9999999999999999988764321                                                       


Q ss_pred             -------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccC
Q 004790          427 -------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS  493 (730)
Q Consensus       427 -------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~  493 (730)
                                   ...+++..++.|+.||+.||.|||++||+||||||+|||++.++++||+|||+++.......     
T Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~-----  267 (374)
T cd05106         193 QSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSN-----  267 (374)
T ss_pred             ccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcc-----
Confidence                         12478888999999999999999999999999999999999999999999999843210000     


Q ss_pred             CCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCc
Q 004790          494 SLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTH  573 (730)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~  573 (730)
                                                                                           ........+++
T Consensus       268 ---------------------------------------------------------------------~~~~~~~~~~~  278 (374)
T cd05106         268 ---------------------------------------------------------------------YVVKGNARLPV  278 (374)
T ss_pred             ---------------------------------------------------------------------eeeccCCCCcc
Confidence                                                                                 00001123567


Q ss_pred             ccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCC
Q 004790          574 EYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQH  652 (730)
Q Consensus       574 ~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~  652 (730)
                      .|+|||++.+..++.++|||||||++|||++ |+.||........+..++......+.....+.++++||.+||..||++
T Consensus       279 ~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~  358 (374)
T cd05106         279 KWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTE  358 (374)
T ss_pred             ceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHHHHcccCccCCCCCCHHHHHHHHHHcCCChhh
Confidence            8999999999999999999999999999997 999998765544444444444444444456889999999999999999


Q ss_pred             cCCch
Q 004790          653 RLGVK  657 (730)
Q Consensus       653 R~t~~  657 (730)
                      ||++.
T Consensus       359 RPs~~  363 (374)
T cd05106         359 RPTFS  363 (374)
T ss_pred             CcCHH
Confidence            99954

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=7.8e-41  Score=342.98  Aligned_cols=253  Identities=29%  Similarity=0.472  Sum_probs=213.1

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++.+.||.|+||.||++.+..+++.||+|.+.....     ...+.+|+++++.++||||+++++++.++..+|++|
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-----~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~   77 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED-----LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVM   77 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH-----HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEE
Confidence            579999999999999999999999899999999875432     567889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+++++|.+++... ...+++..++.++.||+.||.|||+.||+||||+|+||+++.++.++|+|||++......    
T Consensus        78 e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~----  152 (256)
T cd06612          78 EYCGAGSVSDIMKIT-NKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDT----  152 (256)
T ss_pred             ecCCCCcHHHHHHhC-ccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccC----
Confidence            999999999987643 356899999999999999999999999999999999999999999999999998432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              ........
T Consensus       153 ------------------------------------------------------------------------~~~~~~~~  160 (256)
T cd06612         153 ------------------------------------------------------------------------MAKRNTVI  160 (256)
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    00011235


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-ccCCCCCCCChhHHHHHHhhhcCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-LRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      |+..|+|||++.+..++.++|||||||++|+|++|+.||...........+.... ..+.....++.++.+||.+||..|
T Consensus       161 ~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  240 (256)
T cd06612         161 GTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKD  240 (256)
T ss_pred             CCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcC
Confidence            7889999999999999999999999999999999999998765544433332211 122223356788999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF  669 (730)
                      |++||+    +.++++||||
T Consensus       241 P~~Rps----~~~il~~~~~  256 (256)
T cd06612         241 PEERPS----AIQLLQHPFI  256 (256)
T ss_pred             hhhCcC----HHHHhcCCCC
Confidence            999999    7999999998

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=8.8e-41  Score=343.84  Aligned_cols=251  Identities=27%  Similarity=0.464  Sum_probs=210.7

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++.+.||.|+||.||++++..++..||+|.++....  ....+.+.+|+.+++.++||||+++++.|++++.+|+|||
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   78 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKS--SSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVME   78 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcc--hHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEe
Confidence            58999999999999999999999999999999865432  2345667889999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+++++|..++....+..+++..++.++.||+.||.|||++||+|+||||+|||++.++.++|+|||++......     
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~-----  153 (255)
T cd08219          79 YCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSP-----  153 (255)
T ss_pred             eCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeeccc-----
Confidence            999999988876655567899999999999999999999999999999999999999999999999987432100     


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                             ........|
T Consensus       154 -----------------------------------------------------------------------~~~~~~~~~  162 (255)
T cd08219         154 -----------------------------------------------------------------------GAYACTYVG  162 (255)
T ss_pred             -----------------------------------------------------------------------ccccccccC
Confidence                                                                                   000113468


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQ  651 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~  651 (730)
                      ++.|+|||++.+..++.++|+||||+++|+|++|..||...+....+..+..+... +....++..+++||.+||..||+
T Consensus       163 ~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~P~  241 (255)
T cd08219         163 TPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYK-PLPSHYSYELRSLIKQMFKRNPR  241 (255)
T ss_pred             CccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHHHHHHHhcCCCC-CCCcccCHHHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999999999876544444443333322 23345788999999999999999


Q ss_pred             CcCCchhcHHHHHc
Q 004790          652 HRLGVKRGATEIKQ  665 (730)
Q Consensus       652 ~R~t~~~~a~elL~  665 (730)
                      +||+    +.+++.
T Consensus       242 ~Rp~----~~~il~  251 (255)
T cd08219         242 SRPS----ATTILS  251 (255)
T ss_pred             cCCC----HHHHhh
Confidence            9999    577765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=3.4e-41  Score=353.64  Aligned_cols=258  Identities=27%  Similarity=0.382  Sum_probs=213.0

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|++++.||+|+||+||++++..+++.||+|++....  .......+.+|+++++.++||||+++++++.....+|
T Consensus         2 l~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   79 (284)
T cd06620           2 LRNEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGA--KSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNIC   79 (284)
T ss_pred             ccHHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecC--cchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEE
Confidence            34578999999999999999999999999999999986542  2234567889999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |||||+++++|..++...  +.+++..++.++.||+.||.|||+ .|++||||||+|||++.++.++|+|||++..... 
T Consensus        80 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~-  156 (284)
T cd06620          80 MCMEFMDCGSLDRIYKKG--GPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELIN-  156 (284)
T ss_pred             EEEecCCCCCHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccchhh-
Confidence            999999999998887654  568999999999999999999997 6999999999999999999999999998732100 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       157 -----------------------------------------------------------------------------~~~  159 (284)
T cd06620         157 -----------------------------------------------------------------------------SIA  159 (284)
T ss_pred             -----------------------------------------------------------------------------hcc
Confidence                                                                                         000


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc-----------cceeeeecccccCCCCCCCC
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-----------ATLFNVVGQQLRFPDSPATS  635 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-----------~~l~~i~~~~~~~p~~~~~s  635 (730)
                      ...+||..|+|||++.+..++.++|+|||||++|+|++|+.||......           ..+..+............++
T Consensus       160 ~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (284)
T cd06620         160 DTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFP  239 (284)
T ss_pred             CccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCCchhcC
Confidence            1247899999999999888999999999999999999999999865432           11111221111111112367


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      .++.+||.+||..||++||+    +.|+++|+||..
T Consensus       240 ~~~~~li~~~l~~dp~~Rpt----~~e~~~~~~~~~  271 (284)
T cd06620         240 EDLRDFVDACLLKDPTERPT----PQQLCAMPPFIQ  271 (284)
T ss_pred             HHHHHHHHHHhcCCcccCcC----HHHHhcCccccc
Confidence            78999999999999999999    799999999964

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=8.6e-41  Score=363.12  Aligned_cols=255  Identities=26%  Similarity=0.441  Sum_probs=204.7

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc------
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD------  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~------  403 (730)
                      ..+|++++.||+|+||.||+|.+..+++.||||++.+... .......+.+|+.+++.++||||++++++|...      
T Consensus        15 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQ-NVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCcccc-ChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            4789999999999999999999999999999999865422 223445677899999999999999999988643      


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ...|+||||+. ++|..++..    .+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||++...
T Consensus        94 ~~~~lv~e~~~-~~l~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~  168 (353)
T cd07850          94 QDVYLVMELMD-ANLCQVIQM----DLDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  168 (353)
T ss_pred             CcEEEEEeccC-CCHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeC
Confidence            35799999994 578776654    2889999999999999999999999999999999999999999999999998432


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ...                                                                             
T Consensus       169 ~~~-----------------------------------------------------------------------------  171 (353)
T cd07850         169 GTS-----------------------------------------------------------------------------  171 (353)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec--------------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--------------------  623 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~--------------------  623 (730)
                      .......||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+....+.+++.                    
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (353)
T cd07850         172 FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNY  251 (353)
T ss_pred             CCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHH
Confidence            001124688999999999999999999999999999999999999986543222211110                    


Q ss_pred             --cc--------------ccCCC-----CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          624 --QQ--------------LRFPD-----SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       624 --~~--------------~~~p~-----~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                        ..              ..++.     ....+..+++||.+||..||++||+    +.|+|+||||+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~eiL~~~~~~~  316 (353)
T cd07850         252 VENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRIS----VDDALQHPYINV  316 (353)
T ss_pred             hhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcC----HHHHhcChhHhh
Confidence              00              00110     1134567899999999999999999    799999999983

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=1.4e-40  Score=349.69  Aligned_cols=268  Identities=40%  Similarity=0.759  Sum_probs=216.8

Q ss_pred             CeEEEeEEccCCcEEEEEEEEC---CCCeEEEEEEeehhhhhh-HHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELS---STRCYFAMKVMDKASLAS-RKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~---~t~~~vAvKvi~k~~~~~-~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      +|++.+.||.|+||.||+|++.   .++..||+|++.+..... ....+++.+|+.+|+.+ +|+||+.++++|+.+..+
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            4899999999999999999885   478899999997654322 23346678899999999 699999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+++++|.+++...  ..+++..+..++.||+.||.|||++|++||||||+|||++.++++||+|||++......
T Consensus        81 ~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  158 (290)
T cd05613          81 HLILDYINGGELFTHLSQR--ERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHED  158 (290)
T ss_pred             EEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceecccc
Confidence            9999999999999887654  46889999999999999999999999999999999999999999999999988432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       159 ---------------------------------------------------------------------------~~~~~  163 (290)
T cd05613         159 ---------------------------------------------------------------------------EVERA  163 (290)
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00011


Q ss_pred             cccccCcccCChhhhccC--CCCCcceeechhHHHHHHhhCCCCCCCCCCccceee----eecccccCCCCCCCChhHHH
Q 004790          567 MSFVGTHEYLAPEIIKGE--GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN----VVGQQLRFPDSPATSYASRD  640 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~--~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~----i~~~~~~~p~~~~~s~~~~d  640 (730)
                      ..+.|+..|+|||.+.+.  .++.++|+|||||++|+|++|..||...........    +.....  +.....+..+.+
T Consensus       164 ~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  241 (290)
T cd05613         164 YSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEP--PYPQEMSALAKD  241 (290)
T ss_pred             ccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccCC--CCCccCCHHHHH
Confidence            235789999999999763  467899999999999999999999975433222222    222222  223457888999


Q ss_pred             HHHhhhcCCCCCcCCc-hhcHHHHHcCCCCCCCCcchhc
Q 004790          641 LIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~-~~~a~elL~HPfF~~v~w~~~r  678 (730)
                      ||++||..||.+|++. ...+++++.||||+.++|..+.
T Consensus       242 ll~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~~~~~  280 (290)
T cd05613         242 IIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKINWDDLA  280 (290)
T ss_pred             HHHHHhcCCHHHhcCCCCCCHHHHHcCcccccCCHHHHh
Confidence            9999999999999854 2458999999999999998763

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=1.3e-40  Score=345.94  Aligned_cols=258  Identities=28%  Similarity=0.469  Sum_probs=210.8

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh-------hHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA-------SRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~-------~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      +|.+.+.||.|+||.||+|....+++.||+|.++.....       .....+.+.+|+.+++.++||||+++++++....
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            588899999999999999999999999999988643211       1223456788999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+++||||++|++|..++.+.  ..+++..++.++.||+.||.|||++|++||||||+||+++.++.++|+|||++....
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~  159 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTY--GRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSD  159 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeecccccccc
Confidence            999999999999999988765  578999999999999999999999999999999999999999999999999884310


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ...                                                                          ...
T Consensus       160 ~~~--------------------------------------------------------------------------~~~  165 (272)
T cd06629         160 DIY--------------------------------------------------------------------------DND  165 (272)
T ss_pred             ccc--------------------------------------------------------------------------ccc
Confidence            000                                                                          000


Q ss_pred             cccccccCcccCChhhhccCC--CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc--ccCCC--CCCCChhH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEG--HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ--LRFPD--SPATSYAS  638 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~--~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~--~~~p~--~~~~s~~~  638 (730)
                      ......|+..|+|||++....  ++.++|+||||+++|+|++|..||........+.++....  ..++.  ...++.++
T Consensus       166 ~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (272)
T cd06629         166 QNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVA  245 (272)
T ss_pred             ccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhccccCCcCCccccccCCHHH
Confidence            112346899999999998765  7899999999999999999999997655443333332221  22222  13468899


Q ss_pred             HHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          639 RDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       639 ~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      ++||.+||..||++||+    ++++++||||
T Consensus       246 ~~li~~~l~~~p~~Rps----~~~il~~~~~  272 (272)
T cd06629         246 LDFLNACFTINPDNRPT----ARELLQHPFI  272 (272)
T ss_pred             HHHHHHHhcCChhhCCC----HHHHhhCCCC
Confidence            99999999999999999    7999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=1e-40  Score=350.43  Aligned_cols=256  Identities=28%  Similarity=0.435  Sum_probs=202.5

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||.|+||.||+|+++.+++.||||.+......  .....+.+|+++++.++||||+++++++.++...|+|
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEE--GAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLV   81 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEeccccc--CCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEE
Confidence            47899999999999999999999999999999998754321  1123456799999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+. ++|..++.+.. ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++.....   
T Consensus        82 ~e~~~-~~L~~~~~~~~-~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~---  156 (291)
T cd07844          82 FEYLD-TDLKQYMDDCG-GGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVP---  156 (291)
T ss_pred             EecCC-CCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccccCCC---
Confidence            99996 58988776543 36899999999999999999999999999999999999999999999999987421000   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              . ......
T Consensus       157 ------------------------------------------------------------------------~-~~~~~~  163 (291)
T cd07844         157 ------------------------------------------------------------------------S-KTYSNE  163 (291)
T ss_pred             ------------------------------------------------------------------------C-cccccc
Confidence                                                                                    0 000112


Q ss_pred             ccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCc-ccee---eeecc----------------cccC
Q 004790          570 VGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLF---NVVGQ----------------QLRF  628 (730)
Q Consensus       570 vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~---~i~~~----------------~~~~  628 (730)
                      .++..|+|||++.+. .++.++|||||||++|+|++|+.||.+.... +.+.   +.+..                ...+
T Consensus       164 ~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (291)
T cd07844         164 VVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSF  243 (291)
T ss_pred             ccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccc
Confidence            468899999999764 5889999999999999999999999765421 1100   00000                0000


Q ss_pred             C---------CCCCCC--hhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          629 P---------DSPATS--YASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       629 p---------~~~~~s--~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      +         .....+  .++.+||.+||..||++||+    +.++++||||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps----~~e~l~~~~f  291 (291)
T cd07844         244 PFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRIS----AAEAMKHPYF  291 (291)
T ss_pred             cccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccC----HHHHhcCCCC
Confidence            0         001233  78889999999999999999    7999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.3e-41  Score=343.58  Aligned_cols=254  Identities=31%  Similarity=0.491  Sum_probs=212.2

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++.+.||.|+||.||+|.+..+++.+|+|++.....   .....+.+|+++++.++||||+++++.+..+..+|++|
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~   79 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPG---DDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVM   79 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCch---hhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEE
Confidence            579999999999999999999999999999999976532   24567889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+++++|..++... ...+++..++.++.|++.||.|||++||+|+||||+||+++.++.+||+|||++......    
T Consensus        80 e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~----  154 (262)
T cd06613          80 EYCGGGSLQDIYQVT-RGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTAT----  154 (262)
T ss_pred             eCCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhhh----
Confidence            999999999877653 246899999999999999999999999999999999999999999999999998432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              ........
T Consensus       155 ------------------------------------------------------------------------~~~~~~~~  162 (262)
T cd06613         155 ------------------------------------------------------------------------IAKRKSFI  162 (262)
T ss_pred             ------------------------------------------------------------------------hhcccccc
Confidence                                                                                    00011246


Q ss_pred             cCcccCChhhhccC---CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC---CCCCCChhHHHHHHh
Q 004790          571 GTHEYLAPEIIKGE---GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP---DSPATSYASRDLIRG  644 (730)
Q Consensus       571 GT~~Y~APEvl~g~---~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p---~~~~~s~~~~dLI~~  644 (730)
                      |+..|+|||++.+.   .++.++|+|||||++|||++|+.||.+.........+....+..+   .....+.++++||++
T Consensus       163 ~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  242 (262)
T cd06613         163 GTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKK  242 (262)
T ss_pred             CCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHH
Confidence            88999999999877   788999999999999999999999987654444433332322211   123456789999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPF  668 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPf  668 (730)
                      ||..||.+||+    +.+++.|+|
T Consensus       243 ~l~~~p~~Rpt----~~~il~~~~  262 (262)
T cd06613         243 CLTKDPKKRPT----ATKLLQHPF  262 (262)
T ss_pred             HcCCChhhCCC----HHHHhcCCC
Confidence            99999999999    799999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=9e-41  Score=355.07  Aligned_cols=260  Identities=29%  Similarity=0.405  Sum_probs=206.3

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc--cee
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD--RFS  406 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~--~~l  406 (730)
                      ..++|++++.||.|+||.||+|.++.++..||+|+++...... .....+.+|+.+++.++|+||+++++++...  ..+
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERD-GIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSI   83 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCC-CCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeE
Confidence            4578999999999999999999999999999999987543221 2223456799999999999999999998754  568


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+. ++|..++.... ..+++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......
T Consensus        84 ~lv~e~~~-~~l~~~l~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~  161 (309)
T cd07845          84 FLVMEYCE-QDLASLLDNMP-TPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLP  161 (309)
T ss_pred             EEEEecCC-CCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeecCCc
Confidence            99999995 57877766532 56899999999999999999999999999999999999999999999999998432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      .                                                                            ...
T Consensus       162 ~----------------------------------------------------------------------------~~~  165 (309)
T cd07845         162 A----------------------------------------------------------------------------KPM  165 (309)
T ss_pred             c----------------------------------------------------------------------------CCC
Confidence            0                                                                            000


Q ss_pred             cccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-------------------cc
Q 004790          567 MSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-------------------QL  626 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-------------------~~  626 (730)
                      ....+++.|+|||++.+ ..++.++|+|||||++|||++|+.||.+.+....+..+...                   ..
T Consensus       166 ~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (309)
T cd07845         166 TPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKF  245 (309)
T ss_pred             CcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccccc
Confidence            11245788999999976 45799999999999999999999999876554433322210                   00


Q ss_pred             cCCC---------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          627 RFPD---------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       627 ~~p~---------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ..+.         ....+.++.+||++||..||++||+    +.++++||||++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t----~~~il~h~~f~~  295 (309)
T cd07845         246 TLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRAT----AEEALESSYFKE  295 (309)
T ss_pred             cccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcC----HHHHhcChhhcc
Confidence            1110         0124778899999999999999999    799999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=1e-40  Score=347.24  Aligned_cols=250  Identities=22%  Similarity=0.278  Sum_probs=204.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEEC---CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELS---STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~---~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      +..++|++.+.||+|+||.||+|.++   ..+..||+|+++...  .......+.+|+.+|+.++||||+++++++..+.
T Consensus         2 i~~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   79 (266)
T cd05064           2 LDNKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGC--SDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGN   79 (266)
T ss_pred             CchHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCC--CHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCC
Confidence            34578999999999999999999875   456689999987542  2234456889999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      ..||||||+++|+|..++... ...+++..++.++.||+.||+|||++|++||||||+|||++.++.+||+|||++....
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~  158 (266)
T cd05064          80 TMMIVTEYMSNGALDSFLRKH-EGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDK  158 (266)
T ss_pred             CcEEEEEeCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCccccccc
Confidence            999999999999999887654 2468999999999999999999999999999999999999999999999999763210


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                           ...
T Consensus       159 ~~---------------------------------------------------------------------------~~~  163 (266)
T cd05064         159 SE---------------------------------------------------------------------------AIY  163 (266)
T ss_pred             cc---------------------------------------------------------------------------chh
Confidence            00                                                                           000


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHh-hCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELl-tG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ......++..|+|||++.+..++.++|||||||++|||+ +|..||.+......+..+ ......+....++..+.++|.
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~  242 (266)
T cd05064         164 TTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAV-EDGFRLPAPRNCPNLLHQLML  242 (266)
T ss_pred             cccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHH-HCCCCCCCCCCCCHHHHHHHH
Confidence            001224567899999999999999999999999999977 599999876554443333 233344555678899999999


Q ss_pred             hhhcCCCCCcCCc
Q 004790          644 GLLVKEPQHRLGV  656 (730)
Q Consensus       644 ~lL~~DP~~R~t~  656 (730)
                      +||..+|.+||++
T Consensus       243 ~c~~~~p~~RP~~  255 (266)
T cd05064         243 DCWQKERGERPRF  255 (266)
T ss_pred             HHcCCCchhCCCH
Confidence            9999999999995

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=2.4e-40  Score=347.60  Aligned_cols=266  Identities=42%  Similarity=0.773  Sum_probs=215.7

Q ss_pred             CeEEEeEEccCCcEEEEEEEEC---CCCeEEEEEEeehhhhhh-HHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELS---STRCYFAMKVMDKASLAS-RKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~---~t~~~vAvKvi~k~~~~~-~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      +|++.+.||+|+||.||++++.   .+++.||||++++..... .....++.+|++++..+ +||||+.+++.|..+..+
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            4899999999999999999864   457789999998654332 23445678899999999 699999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+++++|..++...  ..+++..++.++.|++.||.|||+.|++||||||.|||++.++.++|+|||++......
T Consensus        81 ~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  158 (288)
T cd05583          81 HLILDYVNGGELFTHLYQR--EHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAE  158 (288)
T ss_pred             EEEEecCCCCcHHHHHhhc--CCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECccccccccc
Confidence            9999999999998877654  56899999999999999999999999999999999999999999999999987432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       159 ---------------------------------------------------------------------------~~~~~  163 (288)
T cd05583         159 ---------------------------------------------------------------------------EEERA  163 (288)
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00011


Q ss_pred             cccccCcccCChhhhccCC--CCCcceeechhHHHHHHhhCCCCCCCCCCccceee----eecccccCCCCCCCChhHHH
Q 004790          567 MSFVGTHEYLAPEIIKGEG--HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN----VVGQQLRFPDSPATSYASRD  640 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~--~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~----i~~~~~~~p~~~~~s~~~~d  640 (730)
                      ....|+..|+|||.+.+..  ++.++|+||||+++|||++|..||...+.......    +....  .+....++..+++
T Consensus       164 ~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~  241 (288)
T cd05583         164 YSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSK--PPFPKTMSAEARD  241 (288)
T ss_pred             ccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHccC--CCCCcccCHHHHH
Confidence            1346899999999998765  78899999999999999999999975433221111    11222  2333456889999


Q ss_pred             HHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchh
Q 004790          641 LIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~  677 (730)
                      ||.+||..||++||++. .+.++|+||||+.++|..+
T Consensus       242 li~~~l~~~p~~R~t~~-~~~~~l~~~~~~~~~~~~~  277 (288)
T cd05583         242 FIQKLLEKDPKKRLGAN-GADEIKNHPFFQGIDWDDL  277 (288)
T ss_pred             HHHHHhcCCHhhccCcc-hHHHHhcCcccccCCHHHH
Confidence            99999999999999963 5788999999999999866

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=7.8e-41  Score=352.26  Aligned_cols=262  Identities=25%  Similarity=0.384  Sum_probs=209.6

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +++|++.+.||.|++|.||+|+++.+++.||+|.+...... ......+.+|+++++.++||||+++++++.++..+|+|
T Consensus         1 ~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   79 (294)
T PLN00009          1 MDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQED-EGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLV   79 (294)
T ss_pred             CCceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhcccc-ccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEE
Confidence            36799999999999999999999999999999998654322 23345678899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-CCceEEecccccccccCCCc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-DGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-~g~vKL~DFGlA~~~~~~~~  488 (730)
                      |||++ ++|..++.......+++..++.++.||+.||+|||++||+||||||+|||++. ++.+||+|||++....... 
T Consensus        80 ~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~-  157 (294)
T PLN00009         80 FEYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPV-  157 (294)
T ss_pred             Eeccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCc-
Confidence            99995 57877666554455788999999999999999999999999999999999985 5679999999984321000 


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                 .....
T Consensus       158 ---------------------------------------------------------------------------~~~~~  162 (294)
T PLN00009        158 ---------------------------------------------------------------------------RTFTH  162 (294)
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00012


Q ss_pred             cccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec---cc---------------c---
Q 004790          569 FVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG---QQ---------------L---  626 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~---~~---------------~---  626 (730)
                      ..|++.|+|||++.+. .++.++|||||||++|+|++|+.||.+....+.+.++..   ..               .   
T Consensus       163 ~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (294)
T PLN00009        163 EVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFP  242 (294)
T ss_pred             CceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcc
Confidence            3678999999998774 478999999999999999999999987654333332211   00               0   


Q ss_pred             cCC------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          627 RFP------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       627 ~~p------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      .++      ..+..+.+++++|.+||..||++||+    +.++++||||++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps----~~~~l~~~~~~~~~  291 (294)
T PLN00009        243 KWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRIT----ARAALEHEYFKDLG  291 (294)
T ss_pred             cCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcC----HHHHhcCchHhHHh
Confidence            000      11356788999999999999999999    79999999999764

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=6e-41  Score=368.77  Aligned_cols=258  Identities=19%  Similarity=0.291  Sum_probs=206.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEE-----CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFE  401 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~-----~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~  401 (730)
                      +..++|++.+.||+|+||.||+|++     ..++..||+|+++....  ......+.+|+.+|+.+ +||||++++++|.
T Consensus        32 ~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~--~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~  109 (375)
T cd05104          32 FPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAH--LTEREALMSELKVLSYLGNHINIVNLLGACT  109 (375)
T ss_pred             cchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcC--cHHHHHHHHHHHHHHHhcCCcceeeeeeeec
Confidence            3446899999999999999999974     34677899999865432  23345678899999999 8999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccC-------------------------------------------------------
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQP-------------------------------------------------------  426 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~-------------------------------------------------------  426 (730)
                      ++...|+|||||+||+|..++....                                                       
T Consensus       110 ~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  189 (375)
T cd05104         110 VGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSV  189 (375)
T ss_pred             cCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccccc
Confidence            9999999999999999988775421                                                       


Q ss_pred             ------------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          427 ------------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       427 ------------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                                        ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.......
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  269 (375)
T cd05104         190 RSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSN  269 (375)
T ss_pred             ccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccCccc
Confidence                              12467888899999999999999999999999999999999999999999999853210000


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                ......
T Consensus       270 --------------------------------------------------------------------------~~~~~~  275 (375)
T cd05104         270 --------------------------------------------------------------------------YVVKGN  275 (375)
T ss_pred             --------------------------------------------------------------------------ccccCC
Confidence                                                                                      000011


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      ..++..|+|||++.+..++.++|||||||++|||++ |..||.+......+.+.+............+.++++||.+||.
T Consensus       276 ~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~  355 (375)
T cd05104         276 ARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGYRMLSPECAPSEMYDIMKSCWD  355 (375)
T ss_pred             CCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCccCCCCCCCCHHHHHHHHHHcc
Confidence            245678999999999999999999999999999997 9999987655444444444444433344567899999999999


Q ss_pred             CCCCCcCCchhcHHHHHc
Q 004790          648 KEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~  665 (730)
                      .||++||+    +.++++
T Consensus       356 ~dP~~RPs----~~eil~  369 (375)
T cd05104         356 ADPLKRPT----FKQIVQ  369 (375)
T ss_pred             CChhHCcC----HHHHHH
Confidence            99999999    466654

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=1.9e-40  Score=340.25  Aligned_cols=256  Identities=29%  Similarity=0.491  Sum_probs=214.3

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++.+.||.|+||.||++.++.++..+|+|.+....... .....+.+|+++++.++|+||+++++.+..+..+|+|||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   79 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPV-KEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVME   79 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccc-hhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEe
Confidence            5899999999999999999999999999999997754322 334567889999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc-eEEecccccccccCCCccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH-IMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~-vKL~DFGlA~~~~~~~~~~  490 (730)
                      |+++++|.+++.+..+..+++..++.++.||+.||.|||+.+|+|+||||+|||++.++. +||+|||++......    
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~----  155 (257)
T cd08225          80 YCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDS----  155 (257)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccCC----
Confidence            999999999887665556899999999999999999999999999999999999998864 699999987432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              ........
T Consensus       156 ------------------------------------------------------------------------~~~~~~~~  163 (257)
T cd08225         156 ------------------------------------------------------------------------MELAYTCV  163 (257)
T ss_pred             ------------------------------------------------------------------------cccccccC
Confidence                                                                                    00001236


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      |++.|+|||++.+..++.++|+|||||++|||++|..||...+.......+..... .+..+..+.+++++|.+||..+|
T Consensus       164 ~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~~p  242 (257)
T cd08225         164 GTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKICQGYF-APISPNFSRDLRSLISQLFKVSP  242 (257)
T ss_pred             CCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHhccCh
Confidence            88999999999988899999999999999999999999987655444444333322 22334678899999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF  669 (730)
                      ++||+    +.++++||||
T Consensus       243 ~~Rpt----~~~ll~~~~~  257 (257)
T cd08225         243 RDRPS----ITSILKRPFL  257 (257)
T ss_pred             hhCcC----HHHHhhCCCC
Confidence            99999    7999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.4e-41  Score=371.91  Aligned_cols=260  Identities=29%  Similarity=0.471  Sum_probs=208.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      +....|++++.||+||.++||++...+.+ .||+|.+.. ...+...+.-+..|+.+|..| .|.+||+||+|-.+++++
T Consensus       358 Vkg~~Yeilk~iG~GGSSkV~kV~~s~~~-iyalkkv~~-~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~l  435 (677)
T KOG0596|consen  358 VKGREYEILKQIGSGGSSKVFKVLNSDKQ-IYALKKVVL-LEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYL  435 (677)
T ss_pred             ECcchhhHHHhhcCCCcceeeeeecCCCc-chhhhHHHH-hhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceE
Confidence            55678999999999999999999887666 456555432 234556778899999999999 699999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      ||||||= ..||..+|+.. ...++...+++|..|||.|+.++|++||||-||||.|+|+- .|.+||+|||+|..+..+
T Consensus       436 YmvmE~G-d~DL~kiL~k~-~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~D  512 (677)
T KOG0596|consen  436 YMVMECG-DIDLNKILKKK-KSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPD  512 (677)
T ss_pred             EEEeecc-cccHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEEE-eeeEEeeeechhcccCcc
Confidence            9999974 67898888764 34455568999999999999999999999999999999985 689999999999655433


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ++.+.                                                                          .
T Consensus       513 TTsI~--------------------------------------------------------------------------k  518 (677)
T KOG0596|consen  513 TTSIV--------------------------------------------------------------------------K  518 (677)
T ss_pred             cccee--------------------------------------------------------------------------e
Confidence            33211                                                                          1


Q ss_pred             cccccCcccCChhhhccCC-----------CCCcceeechhHHHHHHhhCCCCCCCCCC-ccceeeeec--ccccCCCCC
Q 004790          567 MSFVGTHEYLAPEIIKGEG-----------HGSAVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNVVG--QQLRFPDSP  632 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~-----------~~~~sDIWSLG~iLyELltG~~PF~g~~~-~~~l~~i~~--~~~~~p~~~  632 (730)
                      -+-+||+.||+||.+....           .+.++||||||||||+|++|++||....+ ...+..|..  ..+.||..+
T Consensus       519 dsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~  598 (677)
T KOG0596|consen  519 DSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFPDIP  598 (677)
T ss_pred             ccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCccccccCCC
Confidence            2358999999999997543           35789999999999999999999976432 233334443  334566543


Q ss_pred             CCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          633 ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       633 ~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      . ..++.++++.||.+||.+||+    ..+||+|||++.
T Consensus       599 ~-~~~li~~mK~CL~rdPkkR~s----i~eLLqhpFl~~  632 (677)
T KOG0596|consen  599 E-NDELIDVMKCCLARDPKKRWS----IPELLQHPFLQI  632 (677)
T ss_pred             C-chHHHHHHHHHHhcCcccCCC----cHHHhcCccccc
Confidence            3 344999999999999999999    589999999985

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=1.6e-40  Score=341.78  Aligned_cols=259  Identities=29%  Similarity=0.464  Sum_probs=216.2

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++.+.||.|++|.||+|++..+++.||+|++......  .....+.+|+.+++.++||||+++++++..+..+|+||
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   78 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE--EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVL   78 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch--HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEE
Confidence            3699999999999999999999999999999998765432  34567889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||+++++|..++...  ..+++..+..++.||+.||.|||+ +|++||||+|+||+++.++.++|+|||++......   
T Consensus        79 e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~---  153 (264)
T cd06623          79 EYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENT---  153 (264)
T ss_pred             EecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecccC---
Confidence            999999999988765  578999999999999999999999 99999999999999999999999999987432100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       154 -------------------------------------------------------------------------~~~~~~~  160 (264)
T cd06623         154 -------------------------------------------------------------------------LDQCNTF  160 (264)
T ss_pred             -------------------------------------------------------------------------CCcccce
Confidence                                                                                     0000124


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCC--ccceeeeecccccCCCCCC-CChhHHHHHHhhh
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN--RATLFNVVGQQLRFPDSPA-TSYASRDLIRGLL  646 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~--~~~l~~i~~~~~~~p~~~~-~s~~~~dLI~~lL  646 (730)
                      .++..|+|||.+.+..++.++|+||||+++|+|++|+.||.....  ...+.+.+......+.... ++..+.++|++||
T Consensus       161 ~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  240 (264)
T cd06623         161 VGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISACL  240 (264)
T ss_pred             eecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHc
Confidence            688999999999999899999999999999999999999987642  2121111112222222233 6889999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      ..+|++||+    +.++++||||+.++
T Consensus       241 ~~~p~~R~~----~~~ll~~~~~~~~~  263 (264)
T cd06623         241 QKDPKKRPS----AAELLQHPFIKKAD  263 (264)
T ss_pred             cCChhhCCC----HHHHHhCHHHHhcc
Confidence            999999999    79999999998764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=6.4e-41  Score=345.89  Aligned_cols=255  Identities=29%  Similarity=0.453  Sum_probs=211.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++.+.||.|+||.||++.++.+++.+|+|.+.+....  .....+.+|+++++.++||||+++++.+..+..+|+||
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   78 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINE--AIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICM   78 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccCh--HHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEE
Confidence            3688899999999999999999999999999999765422  44566788999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||+++++|.+++.... ..+++..+..++.||+.||.|||+ .|++||||||+||+++.++.++|+|||++.....    
T Consensus        79 e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~----  153 (265)
T cd06605          79 EYMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVN----  153 (265)
T ss_pred             EecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhHH----
Confidence            9999999999887643 578999999999999999999999 9999999999999999999999999998743100    


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                                ......
T Consensus       154 --------------------------------------------------------------------------~~~~~~  159 (265)
T cd06605         154 --------------------------------------------------------------------------SLAKTF  159 (265)
T ss_pred             --------------------------------------------------------------------------HHhhcc
Confidence                                                                                      000014


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCC-cc----ceeeeeccc-ccCCCCCCCChhHHHHHH
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN-RA----TLFNVVGQQ-LRFPDSPATSYASRDLIR  643 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~-~~----~l~~i~~~~-~~~p~~~~~s~~~~dLI~  643 (730)
                      .|+..|+|||.+.+..++.++|+|||||++|+|++|+.||..... ..    .+..+.... ...+. ..++.++++||.
T Consensus       160 ~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~  238 (265)
T cd06605         160 VGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRLPS-GKFSPDFQDFVN  238 (265)
T ss_pred             cCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCCCCCCh-hhcCHHHHHHHH
Confidence            688999999999999999999999999999999999999975421 11    111111111 11111 126888999999


Q ss_pred             hhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          644 GLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       644 ~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      +||..||.+||+    +.+++.||||+.
T Consensus       239 ~~l~~~p~~Rpt----~~~ll~~~~~~~  262 (265)
T cd06605         239 LCLIKDPRERPS----YKELLEHPFIKK  262 (265)
T ss_pred             HHcCCCchhCcC----HHHHhhCchhhc
Confidence            999999999999    799999999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.9e-40  Score=339.95  Aligned_cols=255  Identities=30%  Similarity=0.472  Sum_probs=212.3

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhh--hhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--ASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~--~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +|+..+.||+|+||+||+|....++..||+|++.....  ...+....+.+|+.+++.++||||+++++++..+..+|+|
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            47788999999999999999998899999999875432  2234556788999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||++|++|..++.+.  ..+++..++.++.||+.||.|||+.||+|+||||+||+++.++.+||+|||++......   
T Consensus        81 ~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~---  155 (258)
T cd06632          81 LELVPGGSLAKLLKKY--GSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEF---  155 (258)
T ss_pred             EEecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceecccc---
Confidence            9999999999988765  46889999999999999999999999999999999999999999999999987432100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                                ......
T Consensus       156 --------------------------------------------------------------------------~~~~~~  161 (258)
T cd06632         156 --------------------------------------------------------------------------SFAKSF  161 (258)
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      001124


Q ss_pred             ccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .|++.|+|||.+.... ++.++|+|||||++|+|++|+.||..........++............++.++++||.+||..
T Consensus       162 ~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  241 (258)
T cd06632         162 KGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKELPPIPDHLSDEAKDFILKCLQR  241 (258)
T ss_pred             CCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHHHHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhc
Confidence            6889999999998777 899999999999999999999999766544443333321111122345688999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF  669 (730)
                      +|++||+    +.+++.|||+
T Consensus       242 ~p~~Rp~----~~~~l~~~~~  258 (258)
T cd06632         242 DPSLRPT----AAELLEHPFV  258 (258)
T ss_pred             CcccCcC----HHHHhcCCCC
Confidence            9999999    7999999996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=2.6e-40  Score=348.58  Aligned_cols=258  Identities=29%  Similarity=0.387  Sum_probs=208.6

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh--hHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA--SRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~--~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +|++++.||.|+||.||+|.+..+++.||||.++.....  .......+..|+++++.++|+||+++++++.++..+|+|
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            488999999999999999999999999999999765443  122334567899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+ +++|..++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++.......  
T Consensus        81 ~e~~-~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~--  156 (298)
T cd07841          81 FEFM-ETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPN--  156 (298)
T ss_pred             Eccc-CCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccCCC--
Confidence            9999 999999887652 369999999999999999999999999999999999999999999999999985421000  


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                                ......
T Consensus       157 --------------------------------------------------------------------------~~~~~~  162 (298)
T cd07841         157 --------------------------------------------------------------------------RKMTHQ  162 (298)
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      000112


Q ss_pred             ccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-----------------c------
Q 004790          570 VGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-----------------Q------  625 (730)
Q Consensus       570 vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-----------------~------  625 (730)
                      .+++.|+|||++.+. .++.++|+|||||++|||++|.+||.+....+.+.++...                 .      
T Consensus       163 ~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (298)
T cd07841         163 VVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPF  242 (298)
T ss_pred             ccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhccccccccccccc
Confidence            568889999998654 5789999999999999999999988876543322221100                 0      


Q ss_pred             ccCC---CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          626 LRFP---DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       626 ~~~p---~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ...+   .....+..+.+||.+||.+||++||+    +.++++|+||++
T Consensus       243 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s----~~e~l~~~~~~~  287 (298)
T cd07841         243 PPTPLKQIFPAASDDALDLLQRLLTLNPNKRIT----ARQALEHPYFSN  287 (298)
T ss_pred             CCcchhhhcccccHHHHHHHHHHhcCCcccCcC----HHHHhhCccccC
Confidence            0000   01234678899999999999999999    799999999996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-40  Score=351.10  Aligned_cols=260  Identities=25%  Similarity=0.350  Sum_probs=203.5

Q ss_pred             CeEEEeEEccCCcEEEEEEEECC--CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc--ceee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSS--TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD--RFSC  407 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~--t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~--~~l~  407 (730)
                      .|++++.||+|+||.||+|.++.  ++..||+|++.+...........+.+|+.+++.++||||++++++|.+.  ..+|
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            48999999999999999999988  8899999999874322233345677899999999999999999999988  8899


Q ss_pred             EEeeecCCCCcccccccc---CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC----CCceEEeccccc
Q 004790          408 LVMEYCPGGDLHTLRQRQ---PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD----DGHIMLSDFDLS  480 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~---~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~----~g~vKL~DFGlA  480 (730)
                      +||||++ ++|..++...   ....+++..++.++.||+.||.|||++||+||||||+|||++.    ++.+||+|||++
T Consensus        81 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~  159 (316)
T cd07842          81 LLFDYAE-HDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLA  159 (316)
T ss_pred             EEEeCCC-cCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccc
Confidence            9999995 4666554422   1236899999999999999999999999999999999999999    899999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ..+.....                                                                        
T Consensus       160 ~~~~~~~~------------------------------------------------------------------------  167 (316)
T cd07842         160 RLFNAPLK------------------------------------------------------------------------  167 (316)
T ss_pred             cccCCCcc------------------------------------------------------------------------
Confidence            53210000                                                                        


Q ss_pred             cccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccc---------eeee---------
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT---------LFNV---------  621 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~---------l~~i---------  621 (730)
                       ........++|+.|+|||++.+. .++.++|||||||++|+|++|+.||.+......         +..+         
T Consensus       168 -~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  246 (316)
T cd07842         168 -PLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTE  246 (316)
T ss_pred             -cccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCch
Confidence             00011134789999999998775 478999999999999999999999987543320         0000         


Q ss_pred             -----------------ecccccCC---------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          622 -----------------VGQQLRFP---------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       622 -----------------~~~~~~~p---------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                                       ......++         .....+.++.++|++||..||.+||+    +.++++||||
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps----~~eil~~~~f  316 (316)
T cd07842         247 KDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRIT----AEEALEHPYF  316 (316)
T ss_pred             hHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcC----HHHHhcCCCC
Confidence                             00001111         00145678899999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=9.6e-41  Score=348.79  Aligned_cols=257  Identities=25%  Similarity=0.357  Sum_probs=209.4

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCC-----eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTR-----CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~-----~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      ..++|++++.||+|+||.||+|.+...+     ..||+|.+....  .......+.+|+.+++.++||||+++++++...
T Consensus         3 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~--~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~   80 (283)
T cd05048           3 PLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA--EPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKE   80 (283)
T ss_pred             ChHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC--CHHHHHHHHHHHHHHHhcCCcccceEEEEEcCC
Confidence            3568999999999999999999986655     689999986543  224456688999999999999999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccCC--------------CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPG--------------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD  469 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~--------------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~  469 (730)
                      ...|++|||+++++|.+++.....              ..+++..++.++.||+.||.|||++||+||||||+|||++.+
T Consensus        81 ~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~  160 (283)
T cd05048          81 QPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEG  160 (283)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCC
Confidence            999999999999999988765321              457888999999999999999999999999999999999999


Q ss_pred             CceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCC
Q 004790          470 GHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGL  549 (730)
Q Consensus       470 g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (730)
                      +.+||+|||+++......                                                              
T Consensus       161 ~~~~L~dfg~~~~~~~~~--------------------------------------------------------------  178 (283)
T cd05048         161 LTVKISDFGLSRDIYSAD--------------------------------------------------------------  178 (283)
T ss_pred             CcEEECCCcceeeccccc--------------------------------------------------------------
Confidence            999999999985321000                                                              


Q ss_pred             CCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccC
Q 004790          550 PSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRF  628 (730)
Q Consensus       550 ~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~  628 (730)
                                  .........+|+.|+|||.+.+..++.++|||||||++|||++ |..||.+....+....+..+. ..
T Consensus       179 ------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~~~~~i~~~~-~~  245 (283)
T cd05048         179 ------------YYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQ-LL  245 (283)
T ss_pred             ------------cccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC-cC
Confidence                        0000112357889999999998899999999999999999997 999998876655444333332 23


Q ss_pred             CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       629 p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      +....++.++.+||.+||..||.+||+    +.+|++|
T Consensus       246 ~~~~~~~~~~~~l~~~c~~~~p~~Rp~----~~~i~~~  279 (283)
T cd05048         246 PCPEDCPARVYALMIECWNEIPARRPR----FKDIHTR  279 (283)
T ss_pred             CCcccCCHHHHHHHHHHccCChhhCcC----HHHHHHH
Confidence            334567899999999999999999999    5676653

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.9e-40  Score=351.72  Aligned_cols=254  Identities=23%  Similarity=0.306  Sum_probs=199.9

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECC----------------CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSS----------------TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFL  393 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~----------------t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnI  393 (730)
                      .++|++.++||+|+||.||+|.+..                ++..||+|++....  .......+.+|+++|+.++||||
T Consensus         4 ~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~ni   81 (304)
T cd05096           4 RGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA--NKNARNDFLKEVKILSRLKDPNI   81 (304)
T ss_pred             hhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC--CHHHHHHHHHHHHHHhhcCCCCe
Confidence            3679999999999999999998643                34579999987542  22345668899999999999999


Q ss_pred             ccccccccccceeeEEeeecCCCCccccccccC-----------------CCCccHHHHHHhHHHHHHHHHHhHhcceee
Q 004790          394 PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQP-----------------GKHFSEYAARFYAAEVLLALEYLHMLGVVY  456 (730)
Q Consensus       394 V~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~-----------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVH  456 (730)
                      +++++++.+....|+||||+++|+|.+++....                 ...+++..+..++.||+.||.|||++||+|
T Consensus        82 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH  161 (304)
T cd05096          82 IRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVH  161 (304)
T ss_pred             eEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccc
Confidence            999999999999999999999999988775431                 124677788899999999999999999999


Q ss_pred             cccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCccccccc
Q 004790          457 RDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKN  536 (730)
Q Consensus       457 RDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~  536 (730)
                      |||||+|||++.++.+||+|||+++......                                                 
T Consensus       162 ~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~-------------------------------------------------  192 (304)
T cd05096         162 RDLATRNCLVGENLTIKIADFGMSRNLYAGD-------------------------------------------------  192 (304)
T ss_pred             cCcchhheEEcCCccEEECCCccceecccCc-------------------------------------------------
Confidence            9999999999999999999999985321000                                                 


Q ss_pred             ccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh--CCCCCCCCCC
Q 004790          537 KKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY--GKTPFKGSGN  614 (730)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt--G~~PF~g~~~  614 (730)
                                               .........++..|+|||++.+..++.++|||||||++|||++  +..||.+...
T Consensus       193 -------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~  247 (304)
T cd05096         193 -------------------------YYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTD  247 (304)
T ss_pred             -------------------------eeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCH
Confidence                                     0000112356889999999999899999999999999999986  6788877554


Q ss_pred             ccceeeee------cccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHH
Q 004790          615 RATLFNVV------GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEI  663 (730)
Q Consensus       615 ~~~l~~i~------~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~el  663 (730)
                      ...+..+.      .........+.++..+.+||.+||..||.+||+    +.+|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs----~~~i  298 (304)
T cd05096         248 EQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPS----FSDI  298 (304)
T ss_pred             HHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcC----HHHH
Confidence            43332211      011112223457889999999999999999999    4666

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=2.8e-40  Score=342.51  Aligned_cols=250  Identities=19%  Similarity=0.299  Sum_probs=206.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +...+|.+.+.||.|+||.||+|.++.+++.||+|++.+..    .....+.+|+++|+.++||||+++++++..+..+|
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   78 (263)
T cd05052           3 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY   78 (263)
T ss_pred             CchHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc----hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcE
Confidence            44567999999999999999999999999999999987543    23456788999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+++++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.......
T Consensus        79 lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~  158 (263)
T cd05052          79 IITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT  158 (263)
T ss_pred             EEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCccccccccce
Confidence            99999999999998876555578999999999999999999999999999999999999999999999999984321000


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       159 ---------------------------------------------------------------------------~~~~~  163 (263)
T cd05052         159 ---------------------------------------------------------------------------YTAHA  163 (263)
T ss_pred             ---------------------------------------------------------------------------eeccC
Confidence                                                                                       00000


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...+++.|+|||++.+..++.++|||||||++|||++ |..||.+....... ..+...+..+.....+.++.+||.+||
T Consensus       164 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~cl  242 (263)
T cd05052         164 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY-ELLEKGYRMERPEGCPPKVYELMRACW  242 (263)
T ss_pred             CCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHH-HHHHCCCCCCCCCCCCHHHHHHHHHHc
Confidence            1234678999999999999999999999999999998 99999876543332 223333334444567899999999999


Q ss_pred             cCCCCCcCCch
Q 004790          647 VKEPQHRLGVK  657 (730)
Q Consensus       647 ~~DP~~R~t~~  657 (730)
                      ..||++||++.
T Consensus       243 ~~~p~~Rp~~~  253 (263)
T cd05052         243 QWNPSDRPSFA  253 (263)
T ss_pred             cCCcccCCCHH
Confidence            99999999953

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=1.8e-40  Score=348.79  Aligned_cols=258  Identities=25%  Similarity=0.398  Sum_probs=204.1

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccce----
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRF----  405 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~----  405 (730)
                      ++|++.+.||+|+||.||+|++..+++.||+|+++.... .......+.+|+.+++.+ +||||+++++++.....    
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~   79 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMD-EEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKP   79 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhcc-ccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCc
Confidence            369999999999999999999999999999999865432 122334577899999999 56999999999987665    


Q ss_pred             -eeEEeeecCCCCccccccccC---CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-CCceEEeccccc
Q 004790          406 -SCLVMEYCPGGDLHTLRQRQP---GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-DGHIMLSDFDLS  480 (730)
Q Consensus       406 -l~LVmEy~~GGsL~~ll~~~~---~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-~g~vKL~DFGlA  480 (730)
                       +|+||||+++ +|..++....   ...+++..++.++.||+.||.|||++||+||||||+||+++. ++.+||+|||++
T Consensus        80 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~  158 (295)
T cd07837          80 SLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLG  158 (295)
T ss_pred             eEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeecccc
Confidence             8999999975 7877665432   246899999999999999999999999999999999999998 899999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ......                                                                          
T Consensus       159 ~~~~~~--------------------------------------------------------------------------  164 (295)
T cd07837         159 RAFSIP--------------------------------------------------------------------------  164 (295)
T ss_pred             eecCCC--------------------------------------------------------------------------
Confidence            432100                                                                          


Q ss_pred             cccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc---------------
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ---------------  624 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~---------------  624 (730)
                        ........+++.|+|||++.+. .++.++|||||||++|+|++|..||.+.+....+..+...               
T Consensus       165 --~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (295)
T cd07837         165 --VKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKL  242 (295)
T ss_pred             --ccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhc
Confidence              0000112568899999998764 5789999999999999999999999876544333222110               


Q ss_pred             --cccCC---------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          625 --QLRFP---------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       625 --~~~~p---------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                        ...++         ..+.++.++.+||.+||..||.+||+    +.++++||||+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~----~~eil~~~~~~  295 (295)
T cd07837         243 RDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRIS----AKAALTHPYFD  295 (295)
T ss_pred             cchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCC----HHHHhcCCCcC
Confidence              00001         01356888999999999999999999    79999999995

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=2.3e-40  Score=341.86  Aligned_cols=248  Identities=21%  Similarity=0.340  Sum_probs=206.5

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|+++++||+|+||.||+|.+.. +..||+|.+.....    ..+.+.+|+.+++.++|+||+++++.+.+....|
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~~~-~~~v~iK~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   77 (261)
T cd05072           3 IPRESIKLVKKLGAGQFGEVWMGYYNN-STKVAVKTLKPGTM----SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIY   77 (261)
T ss_pred             CchHHeEEeeecCCcCCceEEEEEecC-CceEEEEEccCCch----hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcE
Confidence            456789999999999999999999764 45799998865432    2456788999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+++++|.+++.+..+..+++..++.++.||+.||.|||++|++||||||+|||++.++.+||+|||++.......
T Consensus        78 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~  157 (261)
T cd05072          78 IITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE  157 (261)
T ss_pred             EEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCCc
Confidence            99999999999998877666678999999999999999999999999999999999999999999999999984321000


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       158 ---------------------------------------------------------------------------~~~~~  162 (261)
T cd05072         158 ---------------------------------------------------------------------------YTARE  162 (261)
T ss_pred             ---------------------------------------------------------------------------eeccC
Confidence                                                                                       00001


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...++..|+|||++.+..++.++|||||||++|+|++ |+.||.+.........+. ....++.....+.++.+||.+||
T Consensus       163 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l  241 (261)
T cd05072         163 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQ-RGYRMPRMENCPDELYDIMKTCW  241 (261)
T ss_pred             CCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHHHc
Confidence            1246778999999999889999999999999999998 999998765544443333 23445555567899999999999


Q ss_pred             cCCCCCcCCc
Q 004790          647 VKEPQHRLGV  656 (730)
Q Consensus       647 ~~DP~~R~t~  656 (730)
                      ..+|++||++
T Consensus       242 ~~~p~~Rp~~  251 (261)
T cd05072         242 KEKAEERPTF  251 (261)
T ss_pred             cCCcccCcCH
Confidence            9999999994

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=4e-40  Score=348.56  Aligned_cols=257  Identities=26%  Similarity=0.410  Sum_probs=215.7

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      .+|++++.||+|+||.||++....++..||+|.+.....   ...+.+.+|+.+++.++||||+++++.|..+...|+||
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~---~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~   95 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQ---PKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVM   95 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccc---hHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEE
Confidence            689999999999999999999988899999999864422   23456788999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+++++|..++.+.   .+++..+..++.||+.||.|||++|++||||||+||+++.++.++|+|||++......    
T Consensus        96 e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~----  168 (293)
T cd06647          96 EYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE----  168 (293)
T ss_pred             ecCCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceeccccc----
Confidence            999999999887653   5788899999999999999999999999999999999999999999999987421100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              ........
T Consensus       169 ------------------------------------------------------------------------~~~~~~~~  176 (293)
T cd06647         169 ------------------------------------------------------------------------QSKRSTMV  176 (293)
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    00011236


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeee-cccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV-GQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~-~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      |++.|+|||.+.+..++.++|+|||||++|+|++|+.||...+....+..+. .....++....++..+++||++||..+
T Consensus       177 ~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~  256 (293)
T cd06647         177 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMD  256 (293)
T ss_pred             CChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCC
Confidence            8899999999998889999999999999999999999998766544444332 223333444456788999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCCCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      |++||+    +.+++.|+||+..+
T Consensus       257 p~~Rp~----~~~il~h~~~~~~~  276 (293)
T cd06647         257 VEKRGS----AKELLQHPFLKIAK  276 (293)
T ss_pred             hhhCcC----HHHHhcCHHHhcCc
Confidence            999999    69999999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.4e-40  Score=340.58  Aligned_cols=259  Identities=28%  Similarity=0.432  Sum_probs=212.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhh--hhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc--cee
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS--LASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD--RFS  406 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~--~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~--~~l  406 (730)
                      .+|++.+.||+|+||.||++++..+++.||+|.+....  .........+.+|+++++.++||||+++++++.+.  ..+
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            47999999999999999999999999999999875431  12334556788999999999999999999998653  568


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      ++||||+++++|.+++...  +.+++..++.++.||+.||.|||+.||+||||||+||+++.++.++|+|||++......
T Consensus        82 ~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~  159 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAY--GALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTI  159 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECccccccccccc
Confidence            9999999999999887654  45889999999999999999999999999999999999999999999999998532100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ..                                                                         .....
T Consensus       160 ~~-------------------------------------------------------------------------~~~~~  166 (264)
T cd06653         160 CM-------------------------------------------------------------------------SGTGI  166 (264)
T ss_pred             cc-------------------------------------------------------------------------cCccc
Confidence            00                                                                         00001


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ..+.|+..|+|||++.+..++.++|+|||||++|+|++|+.||..........++.........+...+.+++++|++||
T Consensus       167 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l  246 (264)
T cd06653         167 KSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIF  246 (264)
T ss_pred             cccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCCCCcccCHHHHHHHHHHh
Confidence            23468999999999999889999999999999999999999998765555444444333332234567889999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      . +|.+||+    +.+++.|||.
T Consensus       247 ~-~~~~r~~----~~~~~~~~~~  264 (264)
T cd06653         247 V-EEKRRPT----AEFLLRHPFV  264 (264)
T ss_pred             c-CcccCcc----HHHHhcCCCC
Confidence            9 5799999    7899999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=3.6e-40  Score=338.17  Aligned_cols=256  Identities=26%  Similarity=0.390  Sum_probs=211.3

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc--ccceeeEE
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE--TDRFSCLV  409 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~--~~~~l~LV  409 (730)
                      +|++++.||.|+||.||++.+..++..||+|++...... .....++..|+++++.++||||+++++++.  .+..+|++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMT-EKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIV   79 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCC-HHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEE
Confidence            589999999999999999999999999999999765443 344567888999999999999999999775  45678999


Q ss_pred             eeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhH-----hcceeecccCCccEEecCCCceEEeccccccc
Q 004790          410 MEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLH-----MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH-----~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      |||+++++|..++...  ....+++..++.++.||+.||.|||     +.+|+|+||||+||+++.++.+||+|||++..
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~  159 (265)
T cd08217          80 MEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKI  159 (265)
T ss_pred             ehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEeccccccc
Confidence            9999999999887653  2357899999999999999999999     89999999999999999999999999999843


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ....                                                                            
T Consensus       160 ~~~~----------------------------------------------------------------------------  163 (265)
T cd08217         160 LGHD----------------------------------------------------------------------------  163 (265)
T ss_pred             ccCC----------------------------------------------------------------------------
Confidence            2100                                                                            


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      ........|++.|+|||++.+..++.++|+||||+++|+|++|+.||...+.......+..... .+.....+..+.+||
T Consensus       164 ~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~  242 (265)
T cd08217         164 SSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIKEGKF-RRIPYRYSSELNEVI  242 (265)
T ss_pred             cccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHHHHHHHHhcCCC-CCCccccCHHHHHHH
Confidence            0001124689999999999998899999999999999999999999987654333323322222 122345688999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      .+||..+|++||+    +.+|++|||+
T Consensus       243 ~~~l~~~p~~Rp~----~~~il~~~~~  265 (265)
T cd08217         243 KSMLNVDPDKRPS----TEELLQLPLI  265 (265)
T ss_pred             HHHccCCcccCCC----HHHHhhCCCC
Confidence            9999999999999    7999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-41  Score=371.83  Aligned_cols=252  Identities=30%  Similarity=0.493  Sum_probs=214.4

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGG  416 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GG  416 (730)
                      -+||+|.||+||-|++..|....|||-+....   .+..+-+..|+.+.+.|+|.|||++++.+..++++-+.||-++||
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekd---sr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGG  657 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKD---SREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGG  657 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeeccccc---chhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCC
Confidence            36999999999999999999999999886432   245567889999999999999999999999999999999999999


Q ss_pred             CccccccccCCCCc--cHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-CCceEEecccccccccCCCcccccC
Q 004790          417 DLHTLRQRQPGKHF--SEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-DGHIMLSDFDLSLRCAVSPTLIKTS  493 (730)
Q Consensus       417 sL~~ll~~~~~~~l--se~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-~g~vKL~DFGlA~~~~~~~~~~~~~  493 (730)
                      +|..++... -+++  +|...-+|.+||++||.|||++.|||||||-+||||+. .|.+||+|||-+++++.-       
T Consensus       658 SLSsLLrsk-WGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAgi-------  729 (1226)
T KOG4279|consen  658 SLSSLLRSK-WGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGI-------  729 (1226)
T ss_pred             cHHHHHHhc-cCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhccC-------
Confidence            999988754 3456  88999999999999999999999999999999999976 799999999998775310       


Q ss_pred             CCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCc
Q 004790          494 SLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTH  573 (730)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~  573 (730)
                                   +     .|                                                   +-+|.||.
T Consensus       730 -------------n-----P~---------------------------------------------------TETFTGTL  740 (1226)
T KOG4279|consen  730 -------------N-----PC---------------------------------------------------TETFTGTL  740 (1226)
T ss_pred             -------------C-----cc---------------------------------------------------ccccccch
Confidence                         0     01                                                   12578999


Q ss_pred             ccCChhhhccC--CCCCcceeechhHHHHHHhhCCCCCCCCC-CccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          574 EYLAPEIIKGE--GHGSAVDWWTFGIFLHELLYGKTPFKGSG-NRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       574 ~Y~APEvl~g~--~~~~~sDIWSLG~iLyELltG~~PF~g~~-~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      .|||||+|...  +||.++|||||||++.||.||++||.-.+ .+..+|++---....|.+..++.+++.||.+|+..||
T Consensus       741 QYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmyKvHP~iPeelsaeak~FilrcFepd~  820 (1226)
T KOG4279|consen  741 QYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFEPDP  820 (1226)
T ss_pred             hhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcCCCc
Confidence            99999999754  59999999999999999999999997654 3455555433333444456788999999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      .+||+    |.++|+.||++.-
T Consensus       821 ~~R~s----A~~LL~DpFlq~~  838 (1226)
T KOG4279|consen  821 CDRPS----AKDLLQDPFLQHN  838 (1226)
T ss_pred             ccCcc----HHHhccCcccccC
Confidence            99999    8999999999864

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=2.5e-40  Score=345.58  Aligned_cols=257  Identities=29%  Similarity=0.460  Sum_probs=207.8

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++.+.||+|+||.||+|.+..+++.||+|+++.... .......+.+|+++++.++|+||++++++|.++..+|+||
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~   79 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESED-DEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVF   79 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcc-cccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEE
Confidence            369999999999999999999999999999999865432 2234467889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++++.|..+..+.  ..+++..+..++.||+.||.|||++||+||||||+||+++.++.+||+|||++.......   
T Consensus        80 e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~---  154 (288)
T cd07833          80 EYVERTLLELLEASP--GGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARP---  154 (288)
T ss_pred             ecCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCc---
Confidence            999887776655443  458999999999999999999999999999999999999999999999999984321000   


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              ......++
T Consensus       155 ------------------------------------------------------------------------~~~~~~~~  162 (288)
T cd07833         155 ------------------------------------------------------------------------ASPLTDYV  162 (288)
T ss_pred             ------------------------------------------------------------------------cccccCcc
Confidence                                                                                    00011347


Q ss_pred             cCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-------------------ccccCC-
Q 004790          571 GTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-------------------QQLRFP-  629 (730)
Q Consensus       571 GT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-------------------~~~~~p-  629 (730)
                      ++..|+|||++.+. .++.++|+||||+++|+|++|+.||.+....+.+..+..                   ....++ 
T Consensus       163 ~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (288)
T cd07833         163 ATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPE  242 (288)
T ss_pred             cccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCC
Confidence            88999999999988 789999999999999999999999986543222211100                   000000 


Q ss_pred             ----------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          630 ----------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       630 ----------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                                ....++.++++||++||..||++||+    ++++++||||
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps----~~~il~~~~f  288 (288)
T cd07833         243 PSQPESLERRYPGKVSSPALDFLKACLRMDPKERLT----CDELLQHPYF  288 (288)
T ss_pred             CCCcHHHHHhcCCccchHHHHHHHHHhccCchhccc----HHHHhcCCCC
Confidence                      11234788999999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=1.3e-40  Score=352.50  Aligned_cols=255  Identities=29%  Similarity=0.443  Sum_probs=210.7

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +.|.....||.|+||.||++.+..++..||||.+.....   .....+.+|+.+++.++||||+++++.|..+...|+||
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~   98 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQ---QRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVM   98 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchH---HHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEE
Confidence            345556789999999999999999999999999865432   33456789999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+++++|..++..   ..+++..++.++.||+.||+|||++||+||||||+|||++.++.++|+|||++......    
T Consensus        99 e~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~----  171 (292)
T cd06658          99 EFLEGGALTDIVTH---TRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKE----  171 (292)
T ss_pred             eCCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccc----
Confidence            99999999988754   35889999999999999999999999999999999999999999999999987421000    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              .......+
T Consensus       172 ------------------------------------------------------------------------~~~~~~~~  179 (292)
T cd06658         172 ------------------------------------------------------------------------VPKRKSLV  179 (292)
T ss_pred             ------------------------------------------------------------------------cccCceee
Confidence                                                                                    00011246


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-cccCCCCCCCChhHHHHHHhhhcCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-QLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      ||+.|+|||++.+..++.++|+|||||++|||++|+.||.+......+..+... ....+.....+..+++||.+||..|
T Consensus       180 ~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  259 (292)
T cd06658         180 GTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVRE  259 (292)
T ss_pred             cCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCC
Confidence            899999999999989999999999999999999999999876543333222111 1122233456888999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |.+||+    ++++++||||+.
T Consensus       260 P~~Rpt----~~~il~~~~~~~  277 (292)
T cd06658         260 PSQRAT----AQELLQHPFLKL  277 (292)
T ss_pred             hhHCcC----HHHHhhChhhhc
Confidence            999999    799999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=8.1e-40  Score=336.95  Aligned_cols=259  Identities=32%  Similarity=0.544  Sum_probs=214.7

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++.+.||+|+||.||++.+..+++.||+|++...... ......+.+|+++++.++|+||+++++.+.+...+++|+|
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND-PKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFME   79 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccc-hHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEe
Confidence            589999999999999999999989999999999766443 4567789999999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+++++|.+++...  ..+++..++.++.||+.||.|||++||+|+||||+||+++.++.+||+|||++.........  
T Consensus        80 ~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~--  155 (264)
T cd06626          80 YCSGGTLEELLEHG--RILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTT--  155 (264)
T ss_pred             cCCCCcHHHHHhhc--CCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCc--
Confidence            99999999988754  45889999999999999999999999999999999999999999999999998542100000  


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                            .........+
T Consensus       156 ----------------------------------------------------------------------~~~~~~~~~~  165 (264)
T cd06626         156 ----------------------------------------------------------------------MGEEVQSLAG  165 (264)
T ss_pred             ----------------------------------------------------------------------ccccccCCcC
Confidence                                                                                  0000012467


Q ss_pred             CcccCChhhhccCC---CCCcceeechhHHHHHHhhCCCCCCCCCCccc-eeeee-cccccCCCCCCCChhHHHHHHhhh
Q 004790          572 THEYLAPEIIKGEG---HGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT-LFNVV-GQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       572 T~~Y~APEvl~g~~---~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~-l~~i~-~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ++.|+|||++.+..   ++.++|+|||||++|+|++|+.||........ .+.+. .....+|.....+..+.+||++||
T Consensus       166 ~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  245 (264)
T cd06626         166 TPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCL  245 (264)
T ss_pred             CcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHc
Confidence            89999999998876   88999999999999999999999976533222 22222 223345555556889999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      ..||++||+    +.+++.|||+
T Consensus       246 ~~~p~~R~~----~~~i~~~~~~  264 (264)
T cd06626         246 ESDPKKRPT----ASELLQHPFV  264 (264)
T ss_pred             cCCcccCCC----HHHHhcCCCC
Confidence            999999999    6899999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=1.2e-40  Score=349.44  Aligned_cols=261  Identities=24%  Similarity=0.317  Sum_probs=207.6

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeEE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~LV  409 (730)
                      ++|+.++.||+|+||.||++++..+++.||+|.+.+....  .....+.+|+.++.++. ||||+++++++..+...|++
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~   81 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE--KEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWIC   81 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccCh--HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEE
Confidence            5677889999999999999999999999999998765432  34456788999999985 99999999999999999999


Q ss_pred             eeecCCCCccccc---cccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccccccccC
Q 004790          410 MEYCPGGDLHTLR---QRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       410 mEy~~GGsL~~ll---~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      |||+. ++|..+.   .......+++..+..++.|++.||+|||+ .||+||||||+|||++.++.+||+|||++.....
T Consensus        82 ~e~~~-~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  160 (288)
T cd06616          82 MELMD-ISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVD  160 (288)
T ss_pred             Eeccc-CCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHhcc
Confidence            99984 5554432   22223579999999999999999999997 5999999999999999999999999999843210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      .                                                                             ..
T Consensus       161 ~-----------------------------------------------------------------------------~~  163 (288)
T cd06616         161 S-----------------------------------------------------------------------------IA  163 (288)
T ss_pred             C-----------------------------------------------------------------------------Cc
Confidence            0                                                                             00


Q ss_pred             ccccccCcccCChhhhccC---CCCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeeeccc-ccCC--CCCCCChhH
Q 004790          566 SMSFVGTHEYLAPEIIKGE---GHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVGQQ-LRFP--DSPATSYAS  638 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~---~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~~~~-~~~p--~~~~~s~~~  638 (730)
                      .....||+.|+|||++.+.   .++.++|||||||++|||++|+.||...... ..+.++.... ..++  ....++.++
T Consensus       164 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (288)
T cd06616         164 KTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSF  243 (288)
T ss_pred             cccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHH
Confidence            0123588899999999876   6899999999999999999999999765321 1222222221 1111  123478899


Q ss_pred             HHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          639 RDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       639 ~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      .+||++||.+||++||+    ++++++||||+...|.
T Consensus       244 ~~li~~~l~~~p~~Rpt----~~~i~~~~~~~~~~~~  276 (288)
T cd06616         244 VNFINLCLIKDESKRPK----YKELLEHPFIKDYEER  276 (288)
T ss_pred             HHHHHHHccCChhhCcC----HHHHhcChhhhchhhc
Confidence            99999999999999999    7999999999986654

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-41  Score=369.70  Aligned_cols=250  Identities=24%  Similarity=0.401  Sum_probs=213.6

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .+..+.+++++.||+|-||.||+|.+.++. .||+|.++...+..    +.+.+|++||+.|+|+|||+||+++..+..+
T Consensus       202 ei~r~~l~l~~~LG~G~FG~V~~g~~~~~~-~vavk~ik~~~m~~----~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~pi  276 (468)
T KOG0197|consen  202 EIPREELKLIRELGSGQFGEVWLGKWNGST-KVAVKTIKEGSMSP----EAFLREAQIMKKLRHEKLVKLYGVCTKQEPI  276 (468)
T ss_pred             eecHHHHHHHHHhcCCccceEEEEEEcCCC-cccceEEeccccCh----hHHHHHHHHHHhCcccCeEEEEEEEecCCce
Confidence            345566888999999999999999998764 59999997654433    3456899999999999999999999998899


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |||||||+.|+|.++|+...+..+...+...++.|||.|++||+++++|||||-..||||+++..+||+|||||+.... 
T Consensus       277 yIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d-  355 (468)
T KOG0197|consen  277 YIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIGD-  355 (468)
T ss_pred             EEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccccCC-
Confidence            9999999999999999986678899999999999999999999999999999999999999999999999999963210 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                 +        .+....+                                                     
T Consensus       356 -----------~--------~Y~~~~~-----------------------------------------------------  363 (468)
T KOG0197|consen  356 -----------D--------EYTASEG-----------------------------------------------------  363 (468)
T ss_pred             -----------C--------ceeecCC-----------------------------------------------------
Confidence                       0        0000000                                                     


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                        .--..-|.|||.+....++.++|||||||+||||+| |+.||.+..+.+.+.. +...+++|.+..++.++.+|+..|
T Consensus       364 --~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~-le~GyRlp~P~~CP~~vY~lM~~C  440 (468)
T KOG0197|consen  364 --GKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLEL-LERGYRLPRPEGCPDEVYELMKSC  440 (468)
T ss_pred             --CCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHH-HhccCcCCCCCCCCHHHHHHHHHH
Confidence              001345899999999999999999999999999995 9999999888777654 556678888899999999999999


Q ss_pred             hcCCCCCcCCch
Q 004790          646 LVKEPQHRLGVK  657 (730)
Q Consensus       646 L~~DP~~R~t~~  657 (730)
                      |..+|++|||++
T Consensus       441 W~~~P~~RPtF~  452 (468)
T KOG0197|consen  441 WHEDPEDRPTFE  452 (468)
T ss_pred             hhCCcccCCCHH
Confidence            999999999984

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=4.7e-40  Score=351.39  Aligned_cols=256  Identities=21%  Similarity=0.291  Sum_probs=206.0

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeE----EEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCY----FAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~----vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      +...+|++++.||+|+||+||+|++..++..    ||||+++...  ......++.+|+.+++.++||||+++++++..+
T Consensus         4 ~~~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~   81 (316)
T cd05108           4 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT--SPKANKEILDEAYVMASVDNPHVCRLLGICLTS   81 (316)
T ss_pred             cchhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC
Confidence            5567899999999999999999998766553    8999986432  224455688899999999999999999988765


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                       ..++|+||+++|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.+
T Consensus        82 -~~~~v~e~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~  159 (316)
T cd05108          82 -TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  159 (316)
T ss_pred             -CceeeeecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccc
Confidence             5789999999999998876542 45888899999999999999999999999999999999999999999999998543


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      .....                                                                          .
T Consensus       160 ~~~~~--------------------------------------------------------------------------~  165 (316)
T cd05108         160 GADEK--------------------------------------------------------------------------E  165 (316)
T ss_pred             cCCCc--------------------------------------------------------------------------c
Confidence            11000                                                                          0


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      .......++..|+|||++.+..++.++|||||||++|||++ |..||.+.... .+..++.....++....++.++.++|
T Consensus       166 ~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li  244 (316)
T cd05108         166 YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS-EISSILEKGERLPQPPICTIDVYMIM  244 (316)
T ss_pred             eeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHH-HHHHHHhCCCCCCCCCCCCHHHHHHH
Confidence            00011234678999999999999999999999999999997 99999875432 33344444455565667788999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcC
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      .+||..||++||++    .+++.+
T Consensus       245 ~~cl~~~p~~Rps~----~~l~~~  264 (316)
T cd05108         245 VKCWMIDADSRPKF----RELIIE  264 (316)
T ss_pred             HHHccCChhhCcCH----HHHHHH
Confidence            99999999999995    455543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=1e-40  Score=348.49  Aligned_cols=258  Identities=27%  Similarity=0.403  Sum_probs=213.2

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      .|+.++.||+|+||.||+|.+..++..||+|+++....  ......+.+|+++++.++||||++++++|..+...|+|||
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIME   82 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccc--hHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEE
Confidence            46777889999999999999999999999999875432  2345678899999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+++++|..++..   ..+++..++.++.||+.||.|||++||+|+||+|+||+++.++.++|+|||++......     
T Consensus        83 ~~~~~~L~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~-----  154 (277)
T cd06642          83 YLGGGSALDLLKP---GPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDT-----  154 (277)
T ss_pred             ccCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccCc-----
Confidence            9999999887764   36899999999999999999999999999999999999999999999999987432100     


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                             ........|
T Consensus       155 -----------------------------------------------------------------------~~~~~~~~~  163 (277)
T cd06642         155 -----------------------------------------------------------------------QIKRNTFVG  163 (277)
T ss_pred             -----------------------------------------------------------------------chhhhcccC
Confidence                                                                                   000112468


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQ  651 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~  651 (730)
                      +..|+|||++.+..++.++|+|||||++|||++|+.||...........+.... ........+.++.+||.+||..+|+
T Consensus       164 ~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~  242 (277)
T cd06642         164 TPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNS-PPTLEGQYSKPFKEFVEACLNKDPR  242 (277)
T ss_pred             cccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhHHhhhhcCC-CCCCCcccCHHHHHHHHHHccCCcc
Confidence            899999999999999999999999999999999999997654443333222211 1111234678899999999999999


Q ss_pred             CcCCchhcHHHHHcCCCCCCCCcc
Q 004790          652 HRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       652 ~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      +||+    +.++++||||....+.
T Consensus       243 ~Rp~----~~~il~~~~~~~~~~~  262 (277)
T cd06642         243 FRPT----AKELLKHKFITRYTKK  262 (277)
T ss_pred             cCcC----HHHHHHhHHHHHHhhh
Confidence            9999    7999999999875543

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-40  Score=342.86  Aligned_cols=256  Identities=26%  Similarity=0.460  Sum_probs=210.7

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC---CCCCccccccccccceeeE
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD---HPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~---HPnIV~L~~~f~~~~~l~L  408 (730)
                      .|++++.||.|+||.||+|.+..+++.||+|+++....  ......+.+|+.+++.++   ||||++++++|..+...|+
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~l   79 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTP--DDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWI   79 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCC--chhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEE
Confidence            58889999999999999999999999999999875422  234456788999999986   9999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||++|++|..++...   .+++..+..++.||+.||.|||+.||+||||+|+||+++.++.++|+|||++......  
T Consensus        80 v~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~--  154 (277)
T cd06917          80 IMEYAEGGSVRTLMKAG---PIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQN--  154 (277)
T ss_pred             EEecCCCCcHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCC--
Confidence            99999999999887653   6899999999999999999999999999999999999999999999999998432100  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                ......
T Consensus       155 --------------------------------------------------------------------------~~~~~~  160 (277)
T cd06917         155 --------------------------------------------------------------------------SSKRST  160 (277)
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      000112


Q ss_pred             cccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-cCCCCCCCChhHHHHHHhhh
Q 004790          569 FVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-RFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ..|+..|+|||.+.+. .++.++|+|||||++|+|++|..||.+.........+..... .++ ....+.++.+||++||
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l  239 (277)
T cd06917         161 FVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPRLE-DNGYSKLLREFVAACL  239 (277)
T ss_pred             ccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhhhhhccccCCCCCCC-cccCCHHHHHHHHHHc
Confidence            4689999999998754 468999999999999999999999987654433322222211 111 1236789999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      ..||++||+    +.+++.|+||+...
T Consensus       240 ~~~p~~R~~----~~~il~~~~~~~~~  262 (277)
T cd06917         240 DEEPKERLS----AEELLKSKWIKAHS  262 (277)
T ss_pred             CCCcccCcC----HHHHhhChHhhccc
Confidence            999999999    79999999998643

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=5.6e-40  Score=354.04  Aligned_cols=259  Identities=25%  Similarity=0.385  Sum_probs=203.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc-----ce
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD-----RF  405 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~-----~~  405 (730)
                      ++|++++.||+|+||.||+|++..+++.||||++....  ......++.+|+.+|+.++||||+++++++...     ..
T Consensus         5 ~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   82 (336)
T cd07849           5 PRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFE--HQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFND   82 (336)
T ss_pred             cceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccc--cchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccce
Confidence            68999999999999999999999999999999986421  223445677899999999999999999876543     45


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|+||||+. ++|..++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....
T Consensus        83 ~~lv~e~~~-~~l~~~~~~---~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~  158 (336)
T cd07849          83 VYIVQELME-TDLYKLIKT---QHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADP  158 (336)
T ss_pred             EEEEehhcc-cCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeeccc
Confidence            899999995 578776654   4699999999999999999999999999999999999999999999999999853210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ...                                                                         ....
T Consensus       159 ~~~-------------------------------------------------------------------------~~~~  165 (336)
T cd07849         159 EHD-------------------------------------------------------------------------HTGF  165 (336)
T ss_pred             ccc-------------------------------------------------------------------------ccCC
Confidence            000                                                                         0000


Q ss_pred             ccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceee---------------eec------
Q 004790          566 SMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN---------------VVG------  623 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~---------------i~~------  623 (730)
                      ....+||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+....+..               +..      
T Consensus       166 ~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (336)
T cd07849         166 LTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNY  245 (336)
T ss_pred             cCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhH
Confidence            112478999999999765 4588999999999999999999999976532211110               000      


Q ss_pred             -----ccccCC---CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          624 -----QQLRFP---DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       624 -----~~~~~p---~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                           .....+   ..+..+.++.+||++||..||.+||+    +.++++||||+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt----~~e~l~hp~~~~~  298 (336)
T cd07849         246 IKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRIT----VEEALAHPYLEQY  298 (336)
T ss_pred             HhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcC----HHHHhcCcccccc
Confidence                 000000   01245778999999999999999999    7999999999964

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=3e-40  Score=345.30  Aligned_cols=257  Identities=27%  Similarity=0.425  Sum_probs=214.0

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ..|+.++.||.|+||.||+|.+..++..||+|++.....  ......+.+|+.+++.++||||+++++++.++...|+||
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIM   81 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEecccc--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence            358889999999999999999999999999999875432  244567889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++|++|.+++..   ..+++.++..++.|++.||+|||+++++|+||+|+||+++.++.++|+|||++..+...    
T Consensus        82 e~~~~~~L~~~i~~---~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~----  154 (277)
T cd06640          82 EYLGGGSALDLLRA---GPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDT----  154 (277)
T ss_pred             ecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccCC----
Confidence            99999999988765   36889999999999999999999999999999999999999999999999998432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              ........
T Consensus       155 ------------------------------------------------------------------------~~~~~~~~  162 (277)
T cd06640         155 ------------------------------------------------------------------------QIKRNTFV  162 (277)
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    00011246


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      ++..|+|||++.+..++.++|+|||||++|||++|..||...........+.... ........+..+.+||.+||..+|
T Consensus       163 ~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p  241 (277)
T cd06640         163 GTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNN-PPTLTGEFSKPFKEFIDACLNKDP  241 (277)
T ss_pred             CcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhHhhhhhcCC-CCCCchhhhHHHHHHHHHHcccCc
Confidence            8889999999999889999999999999999999999998765444333322111 111223467789999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCCCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      ++||+    +.++++|+||....
T Consensus       242 ~~Rp~----~~~il~~~~~~~~~  260 (277)
T cd06640         242 SFRPT----AKELLKHKFIVKNA  260 (277)
T ss_pred             ccCcC----HHHHHhChHhhhcc
Confidence            99999    79999999998643

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=5.1e-40  Score=339.98  Aligned_cols=254  Identities=25%  Similarity=0.385  Sum_probs=206.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++.+.||+|+||.||+|++..+++.||||.+........+....+.+|+++|+.++||||+++++++.+.+.+|+||
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            57999999999999999999999999999999987654444555667889999999999999999999999999999999


Q ss_pred             eecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          411 EYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||+++++|..++...  ....+++..+..++.||+.||.|||++||+||||||+|||++.++.++|+|||++......  
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~--  159 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSK--  159 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceeccch--
Confidence            999999998877532  2245889999999999999999999999999999999999999999999999987432100  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                ......
T Consensus       160 --------------------------------------------------------------------------~~~~~~  165 (267)
T cd08228         160 --------------------------------------------------------------------------TTAAHS  165 (267)
T ss_pred             --------------------------------------------------------------------------hHHHhc
Confidence                                                                                      000012


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeeecccccCCC--CCCCChhHHHHHHhh
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVGQQLRFPD--SPATSYASRDLIRGL  645 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~~~~~~~p~--~~~~s~~~~dLI~~l  645 (730)
                      ..|++.|+|||.+.+..++.++|+||||+++|||++|+.||...... ..+...+... .++.  ....+..+++||++|
T Consensus       166 ~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~c  244 (267)
T cd08228         166 LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQC-DYPPLPTEHYSEKLRELVSMC  244 (267)
T ss_pred             CCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcC-CCCCCChhhcCHHHHHHHHHH
Confidence            36888999999999988999999999999999999999999764321 1121111111 1221  124678899999999


Q ss_pred             hcCCCCCcCCchhcHHHHHc
Q 004790          646 LVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~  665 (730)
                      |..+|++||++    .++++
T Consensus       245 l~~~p~~Rp~~----~~vl~  260 (267)
T cd08228         245 IYPDPDQRPDI----GYVHQ  260 (267)
T ss_pred             CCCCcccCcCH----HHHHH
Confidence            99999999995    56654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=6.3e-40  Score=339.32  Aligned_cols=251  Identities=25%  Similarity=0.365  Sum_probs=205.0

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++.+.||.|+||.||++++..+++.||||.+.+...........+.+|+.+++.++||||++++++|..++.+|+||
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            57899999999999999999999999999999987655545555677889999999999999999999999999999999


Q ss_pred             eecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          411 EYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||++|++|..++...  ....+++..++.++.||+.||.|||++||+|+||||+||+++.++.++|+|||++....... 
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~-  160 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT-  160 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCC-
Confidence            999999999877632  23468999999999999999999999999999999999999999999999999874321000 


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                 .....
T Consensus       161 ---------------------------------------------------------------------------~~~~~  165 (267)
T cd08229         161 ---------------------------------------------------------------------------TAAHS  165 (267)
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00012


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc--cceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR--ATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~--~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ..|+..|+|||.+.+..++.++|+||||+++|+|++|..||.+....  .....+.............+..+++||.+||
T Consensus       166 ~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  245 (267)
T cd08229         166 LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCI  245 (267)
T ss_pred             ccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcCCCCCCCcccccHHHHHHHHHhc
Confidence            46889999999999999999999999999999999999999765331  1111121111111112346789999999999


Q ss_pred             cCCCCCcCCch
Q 004790          647 VKEPQHRLGVK  657 (730)
Q Consensus       647 ~~DP~~R~t~~  657 (730)
                      ..||++||++.
T Consensus       246 ~~~p~~Rpt~~  256 (267)
T cd08229         246 NPDPEKRPDIT  256 (267)
T ss_pred             CCCcccCCCHH
Confidence            99999999953

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=5.5e-40  Score=349.18  Aligned_cols=255  Identities=24%  Similarity=0.329  Sum_probs=204.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeE--EEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCY--FAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDR  404 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~--vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~  404 (730)
                      +.+++|++.+.||+|+||.||+|+++.++..  +|+|.+...  ........+.+|+++|..+ +||||+++++++.+++
T Consensus         4 ~~~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~   81 (303)
T cd05088           4 LEWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY--ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG   81 (303)
T ss_pred             cchhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEeccc--CCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCC
Confidence            5568899999999999999999999877654  577776532  2234456788899999999 8999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG  470 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g  470 (730)
                      .+|+||||+++++|..++.+..              ...+++..++.++.||+.||+|||++||+||||||+|||++.++
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~  161 (303)
T cd05088          82 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENY  161 (303)
T ss_pred             CceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCC
Confidence            9999999999999998876432              23588999999999999999999999999999999999999999


Q ss_pred             ceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCC
Q 004790          471 HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLP  550 (730)
Q Consensus       471 ~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (730)
                      .+||+|||++.....                                                                 
T Consensus       162 ~~kl~dfg~~~~~~~-----------------------------------------------------------------  176 (303)
T cd05088         162 VAKIADFGLSRGQEV-----------------------------------------------------------------  176 (303)
T ss_pred             cEEeCccccCcccch-----------------------------------------------------------------
Confidence            999999998731100                                                                 


Q ss_pred             CCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCC
Q 004790          551 SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFP  629 (730)
Q Consensus       551 ~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p  629 (730)
                                  ........++..|+|||++.+..++.++|||||||++|||++ |..||.+....+....+ .......
T Consensus       177 ------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~-~~~~~~~  243 (303)
T cd05088         177 ------------YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKL-PQGYRLE  243 (303)
T ss_pred             ------------hhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHH-hcCCcCC
Confidence                        000001134667999999998889999999999999999998 99999876554433322 2222333


Q ss_pred             CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          630 DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       630 ~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      .....+.++.+||.+||..+|++||++    ++++++
T Consensus       244 ~~~~~~~~~~~li~~~l~~~p~~Rp~~----~~il~~  276 (303)
T cd05088         244 KPLNCDDEVYDLMRQCWREKPYERPSF----AQILVS  276 (303)
T ss_pred             CCCCCCHHHHHHHHHHcCCChhhCcCH----HHHHHH
Confidence            334567899999999999999999994    566554

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=1.3e-40  Score=357.72  Aligned_cols=262  Identities=24%  Similarity=0.372  Sum_probs=204.2

Q ss_pred             eEEccC--CcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecC
Q 004790          337 KRLGCG--DIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCP  414 (730)
Q Consensus       337 ~~LG~G--~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~  414 (730)
                      ..||.|  +||+||++++..+++.||||++....... ...+.+.+|+.+++.++||||++++++|..+..+|+||||+.
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~   82 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTE-EHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMA   82 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCH-HHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEeccc
Confidence            346666  99999999999999999999987654332 445778899999999999999999999999999999999999


Q ss_pred             CCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCC
Q 004790          415 GGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS  494 (730)
Q Consensus       415 GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~  494 (730)
                      +++|..++.+.....+++..++.++.||+.||+|||++||+||||||+|||++.++.++++||+.+......        
T Consensus        83 ~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~--------  154 (328)
T cd08226          83 YGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRN--------  154 (328)
T ss_pred             CCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhcc--------
Confidence            999999887654456899999999999999999999999999999999999999999999999865321000        


Q ss_pred             CCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcc
Q 004790          495 LDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHE  574 (730)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~  574 (730)
                                +..                                 .+.                  .........++..
T Consensus       155 ----------~~~---------------------------------~~~------------------~~~~~~~~~~~~~  173 (328)
T cd08226         155 ----------GQK---------------------------------AKV------------------VYDFPQFSTSVLP  173 (328)
T ss_pred             ----------Ccc---------------------------------ccc------------------cccccccccCccC
Confidence                      000                                 000                  0000001235677


Q ss_pred             cCChhhhccC--CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-----------------------------
Q 004790          575 YLAPEIIKGE--GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-----------------------------  623 (730)
Q Consensus       575 Y~APEvl~g~--~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-----------------------------  623 (730)
                      |+|||++.+.  .++.++|||||||++|||++|+.||.+......+..++.                             
T Consensus       174 y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (328)
T cd08226         174 WLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSG  253 (328)
T ss_pred             ccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhcc
Confidence            9999999874  478999999999999999999999986543222211111                             


Q ss_pred             ----------------ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          624 ----------------QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       624 ----------------~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                                      .....+.....+..+.+||++||..||++||+    +.++++||||+.+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt----a~e~l~~~~~~~~  314 (328)
T cd08226         254 IGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPS----ASSLLSHAFFKQV  314 (328)
T ss_pred             cccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCC----HHHHhhCHHHHHH
Confidence                            11111222345678899999999999999999    7999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=2.9e-40  Score=358.10  Aligned_cols=259  Identities=20%  Similarity=0.292  Sum_probs=204.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFE  401 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~  401 (730)
                      +..++|++++.||+|+||.||+|.+..     +++.||+|+++....  ......+.+|+.+++.+ +||||+++++++.
T Consensus         4 ~~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~--~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~   81 (337)
T cd05054           4 FPRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGAT--ASEYKALMTELKILIHIGHHLNVVNLLGACT   81 (337)
T ss_pred             cCHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCC--HHHHHHHHHHHHHHHhhccCcchhheeeeEe
Confidence            444689999999999999999997544     457899999864321  23345677899999999 8999999999875


Q ss_pred             -ccceeeEEeeecCCCCccccccccCC-----------------------------------------------------
Q 004790          402 -TDRFSCLVMEYCPGGDLHTLRQRQPG-----------------------------------------------------  427 (730)
Q Consensus       402 -~~~~l~LVmEy~~GGsL~~ll~~~~~-----------------------------------------------------  427 (730)
                       .+..+|+||||+++++|..++.....                                                     
T Consensus        82 ~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (337)
T cd05054          82 KPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEE  161 (337)
T ss_pred             cCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchh
Confidence             45678999999999999887653211                                                     


Q ss_pred             ------CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCC
Q 004790          428 ------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSR  501 (730)
Q Consensus       428 ------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~  501 (730)
                            ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||++..+...+.             
T Consensus       162 ~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~-------------  228 (337)
T cd05054         162 GDELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPD-------------  228 (337)
T ss_pred             hhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcc-------------
Confidence                  2578889999999999999999999999999999999999999999999999854211000             


Q ss_pred             CCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhh
Q 004790          502 RGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEII  581 (730)
Q Consensus       502 ~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl  581 (730)
                                                                                   ..+.....++..|+|||++
T Consensus       229 -------------------------------------------------------------~~~~~~~~~~~~y~aPE~~  247 (337)
T cd05054         229 -------------------------------------------------------------YVRKGDARLPLKWMAPESI  247 (337)
T ss_pred             -------------------------------------------------------------hhhccCCCCCccccCcHHh
Confidence                                                                         0011123567789999999


Q ss_pred             ccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcH
Q 004790          582 KGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGA  660 (730)
Q Consensus       582 ~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a  660 (730)
                      .+..++.++|||||||+||||++ |..||.+....+.+...+............+.++.+|+.+||+.+|++||+    +
T Consensus       248 ~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs----~  323 (337)
T cd05054         248 FDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPT----F  323 (337)
T ss_pred             cCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhccCCCCCCccCCHHHHHHHHHHccCChhhCcC----H
Confidence            99999999999999999999997 999998755444443333333333333456889999999999999999999    5


Q ss_pred             HHHHcC
Q 004790          661 TEIKQH  666 (730)
Q Consensus       661 ~elL~H  666 (730)
                      .++++|
T Consensus       324 ~ell~~  329 (337)
T cd05054         324 SELVEI  329 (337)
T ss_pred             HHHHHH
Confidence            666653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=5.6e-40  Score=343.91  Aligned_cols=258  Identities=22%  Similarity=0.338  Sum_probs=206.8

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEEC----CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELS----STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~----~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      +.+++|++.+.||+|+||+||+|++.    .++..||+|.+....  .......+.+|+++++.++||||+++++++..+
T Consensus         2 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~   79 (283)
T cd05090           2 LPLSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDIN--NPQQWGEFQQEASLMAELHHPNIVCLLGVVTQE   79 (283)
T ss_pred             CChhhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCC--CHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecC
Confidence            34578999999999999999999853    456789999987532  234456788999999999999999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccC---------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQP---------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD  468 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~---------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~  468 (730)
                      ...|+||||+++++|.+++....               ...+++.++..++.||+.||.|||++||+||||||+|||++.
T Consensus        80 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~  159 (283)
T cd05090          80 QPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGE  159 (283)
T ss_pred             CceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcC
Confidence            99999999999999988774321               134788899999999999999999999999999999999999


Q ss_pred             CCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCC
Q 004790          469 DGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELG  548 (730)
Q Consensus       469 ~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (730)
                      ++.+||+|||+++......                                                             
T Consensus       160 ~~~~kl~dfg~~~~~~~~~-------------------------------------------------------------  178 (283)
T cd05090         160 QLHVKISDLGLSREIYSAD-------------------------------------------------------------  178 (283)
T ss_pred             CCcEEeccccccccccCCc-------------------------------------------------------------
Confidence            9999999999985421000                                                             


Q ss_pred             CCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeeccccc
Q 004790          549 LPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLR  627 (730)
Q Consensus       549 ~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~  627 (730)
                                   .........++..|+|||++.+..++.++|+|||||++|||++ |..||.+.........+ .....
T Consensus       179 -------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~~~~~~-~~~~~  244 (283)
T cd05090         179 -------------YYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMV-RKRQL  244 (283)
T ss_pred             -------------ceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH-HcCCc
Confidence                         0000112356788999999998889999999999999999998 99999876543333222 22223


Q ss_pred             CCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          628 FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       628 ~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      .+....++..+++||.+||..||.+||++    .+|+++
T Consensus       245 ~~~~~~~~~~~~~li~~cl~~~p~~Rp~~----~~i~~~  279 (283)
T cd05090         245 LPCSEDCPPRMYSLMTECWQEGPSRRPRF----KDIHTR  279 (283)
T ss_pred             CCCCCCCCHHHHHHHHHHcccCcccCcCH----HHHHHH
Confidence            34445678999999999999999999995    566543

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=6.5e-40  Score=355.42  Aligned_cols=255  Identities=29%  Similarity=0.442  Sum_probs=207.5

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc-----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR-----  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~-----  404 (730)
                      .++|++++.||+|+||.||++.+..++..||||++.+.. ........+.+|+++|+.++||||++++++|..+.     
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          14 PDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPF-QSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             ccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccc-cchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            467999999999999999999999999999999986532 22334456789999999999999999999997654     


Q ss_pred             -eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          405 -FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       405 -~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                       .+|+||||+ |++|..++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...
T Consensus        93 ~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~  168 (343)
T cd07880          93 HDFYLVMPFM-GTDLGKLMKH---EKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQT  168 (343)
T ss_pred             ceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccccccc
Confidence             458999999 8899887754   36899999999999999999999999999999999999999999999999988431


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                              
T Consensus       169 ~~------------------------------------------------------------------------------  170 (343)
T cd07880         169 DS------------------------------------------------------------------------------  170 (343)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccccc---------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR---------------  627 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~---------------  627 (730)
                       ......+++.|+|||++.+ ..++.++|+|||||++|+|++|+.||.+.+....+..+......               
T Consensus       171 -~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (343)
T cd07880         171 -EMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAK  249 (343)
T ss_pred             -CccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHH
Confidence             0012357889999999986 45789999999999999999999999876543332222110000               


Q ss_pred             --------C------CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          628 --------F------PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       628 --------~------p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                              +      ......+.++.+||.+||..||++||+    +.++++||||+.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t----~~~~l~~~~~~~~  304 (343)
T cd07880         250 NYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRIT----AAEALAHPYFEEF  304 (343)
T ss_pred             HHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCC----HHHHhcCccHhhh
Confidence                    0      011356778999999999999999999    7999999999965

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=3.9e-40  Score=343.23  Aligned_cols=254  Identities=22%  Similarity=0.322  Sum_probs=206.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      ..+|.+++.||+|+||.||+|++..     ++..||+|+++....  .+....+.+|+++|+.++||||+++++++..+.
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   81 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS--NDARKDFEREAELLTNFQHENIVKFYGVCTEGD   81 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCC--HHHHHHHHHHHHHHHhcCCCCchheeeEEecCC
Confidence            4679999999999999999998753     357899999875432  234567889999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccC------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCce
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQP------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHI  472 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~v  472 (730)
                      ..|+||||++|++|..++....            ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~  161 (280)
T cd05049          82 PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVV  161 (280)
T ss_pred             CeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeE
Confidence            9999999999999998876431            2457889999999999999999999999999999999999999999


Q ss_pred             EEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCC
Q 004790          473 MLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSS  552 (730)
Q Consensus       473 KL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (730)
                      ||+|||++........                                                                
T Consensus       162 kl~d~g~~~~~~~~~~----------------------------------------------------------------  177 (280)
T cd05049         162 KIGDFGMSRDVYTTDY----------------------------------------------------------------  177 (280)
T ss_pred             EECCcccceecccCcc----------------------------------------------------------------
Confidence            9999999843210000                                                                


Q ss_pred             CCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCC
Q 004790          553 TLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDS  631 (730)
Q Consensus       553 ~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~  631 (730)
                                ........+++.|+|||++.+..++.++|||||||++|||++ |..||.+......+..+..+.... ..
T Consensus       178 ----------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~~~~~~~-~~  246 (280)
T cd05049         178 ----------YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQGRLLQ-RP  246 (280)
T ss_pred             ----------eecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCcCC-CC
Confidence                      000012246789999999999999999999999999999998 999998776655554444333322 23


Q ss_pred             CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHH
Q 004790          632 PATSYASRDLIRGLLVKEPQHRLGVKRGATEIK  664 (730)
Q Consensus       632 ~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL  664 (730)
                      ...+..+++||++||..||++||++    .|++
T Consensus       247 ~~~~~~~~~li~~~l~~~p~~Rp~~----~eil  275 (280)
T cd05049         247 RTCPSEVYDIMLGCWKRDPQQRINI----KDIH  275 (280)
T ss_pred             CCCCHHHHHHHHHHcCCCcccCCCH----HHHH
Confidence            4678999999999999999999994    5554

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=5.6e-40  Score=342.91  Aligned_cols=248  Identities=29%  Similarity=0.458  Sum_probs=200.1

Q ss_pred             CCeEEEeEE--ccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceee
Q 004790          331 SHFRLLKRL--GCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       331 ~~y~il~~L--G~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~  407 (730)
                      ++|++.+.+  |.|+||.||+++.+.++..+|+|++.+.....        .|+.+...+ +||||+++++.|..++.+|
T Consensus        14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~--------~e~~~~~~~~~h~~iv~~~~~~~~~~~~~   85 (267)
T PHA03390         14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA--------IEPMVHQLMKDNPNFIKLYYSVTTLKGHV   85 (267)
T ss_pred             HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch--------hhHHHHHHhhcCCCEEEEEEEEecCCeeE
Confidence            456666665  99999999999999999999999987643221        133333323 7999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC-ceEEecccccccccCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG-HIMLSDFDLSLRCAVS  486 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g-~vKL~DFGlA~~~~~~  486 (730)
                      +||||++|++|..++...  ..+++..++.++.||+.||.|||+.||+||||||+||+++.++ .++|+|||++....  
T Consensus        86 iv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~--  161 (267)
T PHA03390         86 LIMDYIKDGDLFDLLKKE--GKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIG--  161 (267)
T ss_pred             EEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecC--
Confidence            999999999999988765  4799999999999999999999999999999999999999988 99999999874210  


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                    ..
T Consensus       162 ------------------------------------------------------------------------------~~  163 (267)
T PHA03390        162 ------------------------------------------------------------------------------TP  163 (267)
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          00


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec--ccccCCCCCCCChhHHHHHHh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--QQLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~--~~~~~p~~~~~s~~~~dLI~~  644 (730)
                      ....||..|+|||++.+..++.++|||||||++|||++|+.||........-...+.  .....+.....+..+++||.+
T Consensus       164 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  243 (267)
T PHA03390        164 SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQS  243 (267)
T ss_pred             ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhhcccCCcccccCHHHHHHHHH
Confidence            123578999999999999999999999999999999999999986543321111111  111222334678999999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||+.||.+|++.   .+++|+||||..
T Consensus       244 ~l~~~p~~R~~~---~~~~l~h~~~~~  267 (267)
T PHA03390        244 MLKYNINYRLTN---YNEIIKHPFLKI  267 (267)
T ss_pred             HhccChhhCCch---HHHHhcCCcccC
Confidence            999999999972   599999999973

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=7.9e-40  Score=345.41  Aligned_cols=261  Identities=27%  Similarity=0.399  Sum_probs=200.9

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc-----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR-----  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~-----  404 (730)
                      .++|++++.||+|+||.||+|++..+++.||||++....... .....+.+|+++++.++||||+++++++.+..     
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKE-GFPITALREIKILQLLKHENVVNLIEICRTKATPYNR   89 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcC-CchhHHHHHHHHHHhCCCCCccceEEEEecccccccC
Confidence            468999999999999999999999999999999986543211 22234567999999999999999999876543     


Q ss_pred             ---eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          405 ---FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       405 ---~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                         ..|+||||+. ++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.
T Consensus        90 ~~~~~~lv~e~~~-~~l~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~  167 (310)
T cd07865          90 YKGSFYLVFEFCE-HDLAGLLSNK-NVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLAR  167 (310)
T ss_pred             CCceEEEEEcCCC-cCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCcc
Confidence               4599999994 5787766543 2468999999999999999999999999999999999999999999999999985


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      ........                                                                        
T Consensus       168 ~~~~~~~~------------------------------------------------------------------------  175 (310)
T cd07865         168 AFSLSKNS------------------------------------------------------------------------  175 (310)
T ss_pred             cccCCccc------------------------------------------------------------------------
Confidence            32100000                                                                        


Q ss_pred             ccccccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-----------------
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-----------------  623 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-----------------  623 (730)
                      ........+++..|+|||++.+.. ++.++|+||||+++|||++|+.||.+......+..+..                 
T Consensus       176 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (310)
T cd07865         176 KPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLE  255 (310)
T ss_pred             CCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchh
Confidence            000001236789999999987754 68899999999999999999999987543211110000                 


Q ss_pred             --ccccCCC-----------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          624 --QQLRFPD-----------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       624 --~~~~~p~-----------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                        ....++.           ....+..+++||.+||..||.+||+    ++++++||||
T Consensus       256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t----~~e~l~h~~f  310 (310)
T cd07865         256 LFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRID----ADTALNHDFF  310 (310)
T ss_pred             hhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccC----HHHHhcCCCC
Confidence              0001111           0123567889999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=4.4e-40  Score=346.04  Aligned_cols=255  Identities=26%  Similarity=0.395  Sum_probs=199.8

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||.||+|.+..++..||+|++......  .....+.+|+++|+.++|+||+++++++.++...|+||
T Consensus         5 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           5 TSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEE--GVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             ceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcC--CCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            6799999999999999999999999999999998654321  11234568999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+. ++|..++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.....    
T Consensus        83 e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~----  156 (291)
T cd07870          83 EYMH-TDLAQYMIQHP-GGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIP----  156 (291)
T ss_pred             eccc-CCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccCCC----
Confidence            9995 67766554432 45788889999999999999999999999999999999999999999999988421000    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              .......+
T Consensus       157 ------------------------------------------------------------------------~~~~~~~~  164 (291)
T cd07870         157 ------------------------------------------------------------------------SQTYSSEV  164 (291)
T ss_pred             ------------------------------------------------------------------------CCCCCCcc
Confidence                                                                                    00001235


Q ss_pred             cCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeee--------------c-------cccc
Q 004790          571 GTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVV--------------G-------QQLR  627 (730)
Q Consensus       571 GT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~--------------~-------~~~~  627 (730)
                      +++.|+|||++.+. .++.++|+|||||++|||++|..||.+.... +.+..+.              .       ....
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (291)
T cd07870         165 VTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFL  244 (291)
T ss_pred             ccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhcc
Confidence            78999999999764 4788999999999999999999999765421 1100000              0       0000


Q ss_pred             --CC-------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          628 --FP-------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       628 --~p-------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                        .+       .....+.++.+||.+||..||.+||+    +.+++.||||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t----~~~~l~h~~~  291 (291)
T cd07870         245 PCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRIS----AQDALLHPYF  291 (291)
T ss_pred             ccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcC----HHHHhcCCCC
Confidence              00       00123568899999999999999999    7999999998

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=2e-39  Score=336.68  Aligned_cols=256  Identities=29%  Similarity=0.415  Sum_probs=204.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .+.+.....||+|+||.||+|++..++..||+|.+.....   ...+.+.+|+.+++.++|+||+++++++..+...|+|
T Consensus         7 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   83 (268)
T cd06624           7 YDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDS---RYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIF   83 (268)
T ss_pred             cccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCH---HHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEE
Confidence            3445555789999999999999999999999998875432   3445688999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCc--cHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-CCceEEecccccccccCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHF--SEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-DGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~l--se~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-~g~vKL~DFGlA~~~~~~  486 (730)
                      |||+++++|..++.... ..+  ++..+..++.||+.||.|||++||+||||||+||+++. ++.++|+|||++......
T Consensus        84 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~  162 (268)
T cd06624          84 MEQVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGI  162 (268)
T ss_pred             EecCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheecccC
Confidence            99999999998876532 234  78888999999999999999999999999999999976 679999999987432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                  ....
T Consensus       163 ----------------------------------------------------------------------------~~~~  166 (268)
T cd06624         163 ----------------------------------------------------------------------------NPCT  166 (268)
T ss_pred             ----------------------------------------------------------------------------CCcc
Confidence                                                                                        0000


Q ss_pred             cccccCcccCChhhhccCC--CCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeeecccccCCCCCCCChhHHHHHH
Q 004790          567 MSFVGTHEYLAPEIIKGEG--HGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~--~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ....|++.|+|||++.+..  ++.++|+||||+++|+|++|+.||...... .....+.............+.++++||+
T Consensus       167 ~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  246 (268)
T cd06624         167 ETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFIL  246 (268)
T ss_pred             ccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhhccCCCCCcccCHHHHHHHH
Confidence            1235789999999997654  788999999999999999999999754322 1111111111111122356789999999


Q ss_pred             hhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          644 GLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       644 ~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      +||..+|++||+    +.+++.||||
T Consensus       247 ~~l~~~p~~Rpt----~~~ll~~~~~  268 (268)
T cd06624         247 RCFEPDPDKRAS----AHDLLQDPFL  268 (268)
T ss_pred             HHcCCCchhCCC----HHHHHhCCCC
Confidence            999999999999    7999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=3.1e-40  Score=340.53  Aligned_cols=247  Identities=23%  Similarity=0.329  Sum_probs=208.9

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      ..+|++++.||.|+||.||+|.+.. +..+|+|++.+...   .....+.+|+.+|+.++||||+++++++.+...+|+|
T Consensus         5 ~~~y~~~~~ig~g~~~~vy~~~~~~-~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (261)
T cd05148           5 REEFTLERKLGSGYFGEVWEGLWKN-RVRVAIKILKSDDL---LKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYII   80 (261)
T ss_pred             HHHHHHhhhhccCCCccEEEeEecC-CCcEEEEeccccch---hhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEE
Confidence            4679999999999999999999988 77999999876543   2344578899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+++++|.+++....+..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.......  
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~--  158 (261)
T cd05148          81 TELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDV--  158 (261)
T ss_pred             EeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCCcc--
Confidence            999999999999887666779999999999999999999999999999999999999999999999999984321000  


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                                ......
T Consensus       159 --------------------------------------------------------------------------~~~~~~  164 (261)
T cd05148         159 --------------------------------------------------------------------------YLSSDK  164 (261)
T ss_pred             --------------------------------------------------------------------------ccccCC
Confidence                                                                                      000012


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .++..|+|||++.+..++.++|||||||++|+|++ |+.||.+....+.+..+. .....+.....+.++.++|.+||..
T Consensus       165 ~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~  243 (261)
T cd05148         165 KIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQIT-AGYRMPCPAKCPQEIYKIMLECWAA  243 (261)
T ss_pred             CCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHH-hCCcCCCCCCCCHHHHHHHHHHcCC
Confidence            45778999999999889999999999999999998 899998776555554444 3344455567889999999999999


Q ss_pred             CCCCcCCch
Q 004790          649 EPQHRLGVK  657 (730)
Q Consensus       649 DP~~R~t~~  657 (730)
                      ||++||++.
T Consensus       244 ~p~~Rpt~~  252 (261)
T cd05148         244 EPEDRPSFK  252 (261)
T ss_pred             CchhCcCHH
Confidence            999999954

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=5.7e-40  Score=341.86  Aligned_cols=251  Identities=26%  Similarity=0.426  Sum_probs=198.4

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccc--ceeeEE
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETD--RFSCLV  409 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~--~~l~LV  409 (730)
                      |++++.||+|+||.||+|++..+++.||+|++++..... .. ....+|+.+++.+ +||||+++++++.++  +.+|+|
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~-~~-~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv   78 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSL-EQ-VNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALV   78 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCc-hh-hhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEE
Confidence            788999999999999999999999999999987643221 22 2335688888888 599999999999887  899999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+. ++|..++... ...+++..++.++.||+.||+|||++||+||||||+||+++. +.+||+|||++......   
T Consensus        79 ~e~~~-~~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~---  152 (282)
T cd07831          79 FELMD-MNLYELIKGR-KRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGIYSK---  152 (282)
T ss_pred             EecCC-ccHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEecccccccccC---
Confidence            99996 5776665543 246899999999999999999999999999999999999999 99999999998432100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                                ......
T Consensus       153 --------------------------------------------------------------------------~~~~~~  158 (282)
T cd07831         153 --------------------------------------------------------------------------PPYTEY  158 (282)
T ss_pred             --------------------------------------------------------------------------CCcCCC
Confidence                                                                                      000123


Q ss_pred             ccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec------------------ccccCCC
Q 004790          570 VGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG------------------QQLRFPD  630 (730)
Q Consensus       570 vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~------------------~~~~~p~  630 (730)
                      .+|+.|+|||++.+. .++.++|||||||++|||++|..||.+.+..+.+..+..                  ....++.
T Consensus       159 ~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (282)
T cd07831         159 ISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPS  238 (282)
T ss_pred             CCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcc
Confidence            578899999987654 468899999999999999999999987654322211110                  0111111


Q ss_pred             ---------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          631 ---------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       631 ---------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                               ....+.++++||.+||.+||++||+    ++++++||||
T Consensus       239 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~----~~~~l~~~~~  282 (282)
T cd07831         239 KKGTGLRKLLPNASAEGLDLLKKLLAYDPDERIT----AKQALRHPYF  282 (282)
T ss_pred             cccccHHHHcccccHHHHHHHHHHhccCcccccC----HHHHhhCCCC
Confidence                     1245789999999999999999999    7999999998

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=3.2e-40  Score=347.43  Aligned_cols=256  Identities=27%  Similarity=0.386  Sum_probs=205.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc--ceee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD--RFSC  407 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~--~~l~  407 (730)
                      .++|++.+.||.|+||.||+|++..+++.+|+|.++..... ......+.+|+.+++.++||||+++++++...  ..+|
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEK-EGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIY   82 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeecccc-ccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEE
Confidence            35799999999999999999999999999999999755433 22334567899999999999999999998877  8999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+. ++|..++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.......
T Consensus        83 lv~e~~~-~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~  160 (293)
T cd07843          83 MVMEYVE-HDLKSLMETMK-QPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPL  160 (293)
T ss_pred             EEehhcC-cCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeeccCCc
Confidence            9999996 58888776543 368999999999999999999999999999999999999999999999999885321000


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                  ....
T Consensus       161 ----------------------------------------------------------------------------~~~~  164 (293)
T cd07843         161 ----------------------------------------------------------------------------KPYT  164 (293)
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        0001


Q ss_pred             ccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec---------------------cc
Q 004790          568 SFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG---------------------QQ  625 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~---------------------~~  625 (730)
                      ...+++.|+|||++.+.. ++.++|+|||||++|+|++|+.||.+......+.++..                     ..
T Consensus       165 ~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (293)
T cd07843         165 QLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKT  244 (293)
T ss_pred             cccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhcccc
Confidence            235788999999998765 58899999999999999999999987654332221110                     00


Q ss_pred             ----------ccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          626 ----------LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       626 ----------~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                                ..++. ..++..+++||++||..||++||+    +.|+++||||
T Consensus       245 ~~~~~~~~~~~~~~~-~~~~~~~~~li~~~l~~~p~~R~t----~~ell~~~~f  293 (293)
T cd07843         245 FTKYPYNQLRKKFPA-LSLSDNGFDLLNRLLTYDPAKRIS----AEDALKHPYF  293 (293)
T ss_pred             cccccchhhhccccc-cCCChHHHHHHHHHhccCccccCC----HHHHhcCCCC
Confidence                      00111 014788999999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=5e-40  Score=349.40  Aligned_cols=255  Identities=28%  Similarity=0.388  Sum_probs=209.6

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ..|++++.||+|+||.||+|++..+++.||+|++........+....+.+|+++++.++||||++++++|.++...|+||
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            56999999999999999999999999999999997654444455667889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+. |+|..++... ...+++..+..++.||+.||.|||+.||+||||+|+||+++.++.+||+|||++....      
T Consensus        95 e~~~-g~l~~~~~~~-~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~------  166 (307)
T cd06607          95 EYCL-GSASDILEVH-KKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVS------  166 (307)
T ss_pred             HhhC-CCHHHHHHHc-ccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecC------
Confidence            9996 5666655432 2468999999999999999999999999999999999999999999999999873210      


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                                ....+.
T Consensus       167 --------------------------------------------------------------------------~~~~~~  172 (307)
T cd06607         167 --------------------------------------------------------------------------PANSFV  172 (307)
T ss_pred             --------------------------------------------------------------------------CCCCcc
Confidence                                                                                      001236


Q ss_pred             cCcccCChhhhc---cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          571 GTHEYLAPEIIK---GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       571 GT~~Y~APEvl~---g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      |++.|+|||++.   ...++.++||||||+++|||++|+.||.+.+.......+............++..+++||.+||.
T Consensus       173 ~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  252 (307)
T cd06607         173 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLSSNDWSDYFRNFVDSCLQ  252 (307)
T ss_pred             CCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhc
Confidence            788999999985   34578899999999999999999999987654443333222211111123467889999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      .||++||+    +.+++.||||..
T Consensus       253 ~~p~~Rp~----~~~il~~~~~~~  272 (307)
T cd06607         253 KIPQDRPS----SEELLKHRFVLR  272 (307)
T ss_pred             CChhhCcC----HHHHhcChhhcc
Confidence            99999999    799999999985

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=7.2e-40  Score=341.89  Aligned_cols=255  Identities=26%  Similarity=0.432  Sum_probs=205.1

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++++.||.|++|.||+|++..++..||||+++.....  .....+.+|+++++.++||||++++++|.+.+..|||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   78 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEE--GTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFE   78 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccc--cchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEe
Confidence            589999999999999999999999999999999765322  223456789999999999999999999999999999999


Q ss_pred             ecCCCCccccccccC-CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          412 YCPGGDLHTLRQRQP-GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       412 y~~GGsL~~ll~~~~-~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |+++ +|..++.... ...+++..++.++.||+.||.|||++||+||||||+||+++.++.++|+|||++......    
T Consensus        79 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~----  153 (284)
T cd07836          79 YMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIP----  153 (284)
T ss_pred             cCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCC----
Confidence            9975 7877665432 346899999999999999999999999999999999999999999999999988432100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              .......+
T Consensus       154 ------------------------------------------------------------------------~~~~~~~~  161 (284)
T cd07836         154 ------------------------------------------------------------------------VNTFSNEV  161 (284)
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    00001235


Q ss_pred             cCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc------------------cccCCC-
Q 004790          571 GTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ------------------QLRFPD-  630 (730)
Q Consensus       571 GT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~------------------~~~~p~-  630 (730)
                      +|+.|++||++.+. .++.++|+|||||++|+|++|+.||.+.+..+.+..+...                  ...++. 
T Consensus       162 ~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (284)
T cd07836         162 VTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRY  241 (284)
T ss_pred             ccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCC
Confidence            78899999998775 4688999999999999999999999876544332221110                  000110 


Q ss_pred             --------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          631 --------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       631 --------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                              .+..+..++++|.+||..||.+||+    +.++++||||
T Consensus       242 ~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~----~~~~l~~~~f  284 (284)
T cd07836         242 PPQDLQQLFPHADPLGIDLLHRLLQLNPELRIS----AHDALQHPWF  284 (284)
T ss_pred             ChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCC----HHHHhcCCCC
Confidence                    1245778899999999999999999    6999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=6.3e-40  Score=353.39  Aligned_cols=262  Identities=25%  Similarity=0.392  Sum_probs=207.6

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc----ccee
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET----DRFS  406 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~----~~~l  406 (730)
                      .+|++.+.||.|+||.||+|.++.++..||+|++.+... .......+.+|+.+|+.++||||++++++|..    ...+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   83 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFD-VPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDV   83 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccc-cccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceE
Confidence            679999999999999999999999999999999876432 22344567789999999999999999998863    4578


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+ +++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++......
T Consensus        84 ~lv~e~~-~~~l~~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  160 (334)
T cd07855          84 YVVMDLM-ESDLHHIIHSD--QPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSS  160 (334)
T ss_pred             EEEEehh-hhhHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccceeeccc
Confidence            9999999 56888877654  45999999999999999999999999999999999999999999999999998432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ...                                                                        .....
T Consensus       161 ~~~------------------------------------------------------------------------~~~~~  168 (334)
T cd07855         161 PTE------------------------------------------------------------------------HKYFM  168 (334)
T ss_pred             CcC------------------------------------------------------------------------CCccc
Confidence            000                                                                        00011


Q ss_pred             cccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeee-----------------------
Q 004790          567 MSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV-----------------------  622 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~-----------------------  622 (730)
                      ...+|+..|+|||++.+ ..++.++|||||||++|||++|+.||.+.+....+..+.                       
T Consensus       169 ~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  248 (334)
T cd07855         169 TEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYI  248 (334)
T ss_pred             ccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHH
Confidence            23478999999999876 458999999999999999999999997754322111100                       


Q ss_pred             ---cccccCC---CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          623 ---GQQLRFP---DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       623 ---~~~~~~p---~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                         ......+   ..+..+.++++||++||..||++||+    +.++++||||++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt----~~~~l~~~~~~~~  300 (334)
T cd07855         249 QNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERIT----VEQALQHPFLAQY  300 (334)
T ss_pred             hhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcC----HHHHHhChhhhhc
Confidence               0000000   01346889999999999999999999    7899999999864

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=1.8e-39  Score=331.19  Aligned_cols=256  Identities=32%  Similarity=0.537  Sum_probs=215.2

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++.+.||.|+||.||++.+..+++.||+|++...... ......+.+|+++++.++|||++++++.+..+...|+|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e   79 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMS-EKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVME   79 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCC-hHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEE
Confidence            589999999999999999999999999999999765432 2445568899999999999999999999999999999999


Q ss_pred             ecCCCCccccccccC--CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          412 YCPGGDLHTLRQRQP--GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       412 y~~GGsL~~ll~~~~--~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |+++++|..++....  +..+++..+..++.||+.||.|||++|++|+||+|+||+++.++.++|+|||++......   
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~---  156 (258)
T cd08215          80 YADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSST---  156 (258)
T ss_pred             ecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecccC---
Confidence            999999998877643  467999999999999999999999999999999999999999999999999988431100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       157 -------------------------------------------------------------------------~~~~~~~  163 (258)
T cd08215         157 -------------------------------------------------------------------------VDLAKTV  163 (258)
T ss_pred             -------------------------------------------------------------------------cceecce
Confidence                                                                                     0001124


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      .|++.|+|||.+.+..++.++|+||||+++|+|++|+.||...+............. .+.....+.++.++|++||..+
T Consensus       164 ~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~~  242 (258)
T cd08215         164 VGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQY-PPIPSQYSSELRNLVSSLLQKD  242 (258)
T ss_pred             eeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHhcCCC-CCCCCCCCHHHHHHHHHHcCCC
Confidence            689999999999999999999999999999999999999977654433333332221 1222367889999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF  669 (730)
                      |++||+    +.++++||||
T Consensus       243 p~~Rp~----~~~ll~~~~~  258 (258)
T cd08215         243 PEERPS----IAQILQSPFI  258 (258)
T ss_pred             hhhCcC----HHHHhcCCCC
Confidence            999999    7999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=7.6e-40  Score=341.85  Aligned_cols=257  Identities=20%  Similarity=0.260  Sum_probs=204.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      +..++|++.+.||+|+||.||+|.+.+     ++..||+|++.....  ......+.+|+.+++.++||||+++++++..
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~--~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~   80 (277)
T cd05062           3 VAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAAS--MRERIEFLNEASVMKEFNCHHVVRLLGVVSQ   80 (277)
T ss_pred             ccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCC--HHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            345789999999999999999998753     356799999865322  2233457889999999999999999999999


Q ss_pred             cceeeEEeeecCCCCccccccccCC--------CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEE
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPG--------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIML  474 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~--------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL  474 (730)
                      +...|+||||+++++|.+++.....        ..++...+..++.||+.||.|||+.|++||||||+|||++.++.++|
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l  160 (277)
T cd05062          81 GQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKI  160 (277)
T ss_pred             CCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEE
Confidence            9999999999999999988765321        23567788899999999999999999999999999999999999999


Q ss_pred             ecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCC
Q 004790          475 SDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTL  554 (730)
Q Consensus       475 ~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (730)
                      +|||+++.+.....                                                                  
T Consensus       161 ~dfg~~~~~~~~~~------------------------------------------------------------------  174 (277)
T cd05062         161 GDFGMTRDIYETDY------------------------------------------------------------------  174 (277)
T ss_pred             CCCCCccccCCcce------------------------------------------------------------------
Confidence            99999853210000                                                                  


Q ss_pred             cccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCC
Q 004790          555 PELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPA  633 (730)
Q Consensus       555 ~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~  633 (730)
                              ........+++.|+|||++.+..++.++|||||||++|||++ |..||.+......+..+..... .+....
T Consensus       175 --------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~  245 (277)
T cd05062         175 --------YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGL-LDKPDN  245 (277)
T ss_pred             --------eecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCc-CCCCCC
Confidence                    000001246788999999999899999999999999999998 7999987665544433333222 222345


Q ss_pred             CChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          634 TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       634 ~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .+..+++||.+||..||++||+    +.|+++
T Consensus       246 ~~~~~~~li~~~l~~~p~~Rps----~~e~l~  273 (277)
T cd05062         246 CPDMLFELMRMCWQYNPKMRPS----FLEIIS  273 (277)
T ss_pred             CCHHHHHHHHHHcCCChhhCcC----HHHHHH
Confidence            7889999999999999999999    466654

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=9e-40  Score=337.01  Aligned_cols=250  Identities=22%  Similarity=0.326  Sum_probs=203.6

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||.||+++++. +..+|+|.+.+....    ...+.+|+++|+.++||||+++++++..+..+|+|
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~~-~~~~a~K~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   77 (256)
T cd05114           3 PSELTFMKELGSGQFGVVHLGKWRA-QIKVAIKAINEGAMS----EEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIV   77 (256)
T ss_pred             HHHcEEeeEecCCcCceEEEEEecc-CceEEEEecccCCcc----HHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEE
Confidence            4679999999999999999998865 447999988654332    23567899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||++||+|.+++.... ..+++..++.++.||+.||+|||++||+||||||+||+++.++.+||+|||+++......  
T Consensus        78 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~--  154 (256)
T cd05114          78 TEFMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDE--  154 (256)
T ss_pred             EEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccCCCc--
Confidence            99999999998876532 368899999999999999999999999999999999999999999999999884321000  


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       155 -------------------------------------------------------------------------~~~~~~~  161 (256)
T cd05114         155 -------------------------------------------------------------------------YTSSSGA  161 (256)
T ss_pred             -------------------------------------------------------------------------eeccCCC
Confidence                                                                                     0000112


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .++..|+|||++.+..++.++|+|||||++|||++ |+.||...+....+..+..+. ........+.++.+||.+||..
T Consensus       162 ~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~li~~c~~~  240 (256)
T cd05114         162 KFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGF-RLYRPKLASMTVYEVMYSCWHE  240 (256)
T ss_pred             CCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHccC
Confidence            45678999999999899999999999999999999 999998776555554444332 2222345678899999999999


Q ss_pred             CCCCcCCchhcHHHHHc
Q 004790          649 EPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~  665 (730)
                      ||++||+    ++++++
T Consensus       241 ~p~~Rps----~~~l~~  253 (256)
T cd05114         241 KPEGRPT----FAELLR  253 (256)
T ss_pred             CcccCcC----HHHHHH
Confidence            9999999    566654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=5.5e-40  Score=343.09  Aligned_cols=255  Identities=27%  Similarity=0.430  Sum_probs=206.6

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeee
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEY  412 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy  412 (730)
                      |++++.||.|++|.||+|.++.++..||+|++...... ......+.+|+++++.++||||+++++++.++...|+||||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~   79 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETED-EGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEF   79 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeeccccc-ccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEec
Confidence            67889999999999999999999999999998765322 22334577899999999999999999999999999999999


Q ss_pred             cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccccc
Q 004790          413 CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT  492 (730)
Q Consensus       413 ~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~  492 (730)
                      + +++|..++.......+++..+..++.||+.||+|||+++++||||+|+|||++.++.++|+|||++.......     
T Consensus        80 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~-----  153 (283)
T cd07835          80 L-DLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPV-----  153 (283)
T ss_pred             c-CcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCc-----
Confidence            9 5689888877654578999999999999999999999999999999999999999999999999984321000     


Q ss_pred             CCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccC
Q 004790          493 SSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT  572 (730)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT  572 (730)
                                                                                             .......++
T Consensus       154 -----------------------------------------------------------------------~~~~~~~~~  162 (283)
T cd07835         154 -----------------------------------------------------------------------RTYTHEVVT  162 (283)
T ss_pred             -----------------------------------------------------------------------cccCccccc
Confidence                                                                                   000112568


Q ss_pred             cccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc------------------cccCC----
Q 004790          573 HEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ------------------QLRFP----  629 (730)
Q Consensus       573 ~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~------------------~~~~p----  629 (730)
                      +.|+|||++.+. .++.++|||||||++|+|++|+.||.+.+....+.++...                  ...++    
T Consensus       163 ~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (283)
T cd07835         163 LWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWAR  242 (283)
T ss_pred             cCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccc
Confidence            899999998765 4688999999999999999999999876543332221110                  00000    


Q ss_pred             -----CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          630 -----DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       630 -----~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                           ..+.++.++.+||.+||..||++||+    ++++++||||
T Consensus       243 ~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt----~~~il~~~~~  283 (283)
T cd07835         243 QDLSKVVPNLDEDGLDLLSKMLVYDPAKRIS----AKAALQHPYF  283 (283)
T ss_pred             cchhhhcCCCCHHHHHHHHHHhcCChhhCcC----HHHHhcCCCC
Confidence                 12456788999999999999999999    6999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=2.6e-39  Score=333.71  Aligned_cols=249  Identities=24%  Similarity=0.373  Sum_probs=204.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.++............+.+|+++++.++|+||++++++|..+...++||
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            57999999999999999999999999999999987654444455677889999999999999999999999999999999


Q ss_pred             eecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          411 EYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||+++++|..++...  ....+++.+++.++.||+.||.|||+.||+||||||+||+++.++.++|+|||++......  
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~--  159 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSK--  159 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeeccCC--
Confidence            999999998877542  2356899999999999999999999999999999999999999999999999987432100  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                ......
T Consensus       160 --------------------------------------------------------------------------~~~~~~  165 (267)
T cd08224         160 --------------------------------------------------------------------------TTAAHS  165 (267)
T ss_pred             --------------------------------------------------------------------------Ccccce
Confidence                                                                                      000012


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc--cceeeeecccc-cCCCCCCCChhHHHHHHhh
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR--ATLFNVVGQQL-RFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~--~~l~~i~~~~~-~~p~~~~~s~~~~dLI~~l  645 (730)
                      ..|++.|+|||++.+..++.++|+|||||++|+|++|+.||......  .....+..+.. ..| ....+..++++|.+|
T Consensus       166 ~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~c  244 (267)
T cd08224         166 LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPLP-ADHYSEELRDLVSRC  244 (267)
T ss_pred             ecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCCCCCCC-hhhcCHHHHHHHHHH
Confidence            36888999999999999999999999999999999999999764321  11111111111 111 125677999999999


Q ss_pred             hcCCCCCcCCc
Q 004790          646 LVKEPQHRLGV  656 (730)
Q Consensus       646 L~~DP~~R~t~  656 (730)
                      |..+|++||++
T Consensus       245 l~~~p~~Rp~~  255 (267)
T cd08224         245 INPDPEKRPDI  255 (267)
T ss_pred             cCCCcccCCCH
Confidence            99999999995

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=6.3e-40  Score=348.04  Aligned_cols=255  Identities=26%  Similarity=0.439  Sum_probs=209.9

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      .|.....||.|+||.||++.+..+++.||+|++.....   .....+.+|+.+++.++||||++++++|..+...|+|||
T Consensus        22 ~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~---~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e   98 (297)
T cd06659          22 LLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQ---QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLME   98 (297)
T ss_pred             hHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEeccc---chHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEe
Confidence            34555689999999999999999999999999865432   223457789999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+++++|..++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....      
T Consensus        99 ~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~------  169 (297)
T cd06659          99 FLQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISK------  169 (297)
T ss_pred             cCCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhccc------
Confidence            9999999887654   4689999999999999999999999999999999999999999999999998742110      


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                            ........+|
T Consensus       170 ----------------------------------------------------------------------~~~~~~~~~~  179 (297)
T cd06659         170 ----------------------------------------------------------------------DVPKRKSLVG  179 (297)
T ss_pred             ----------------------------------------------------------------------ccccccceec
Confidence                                                                                  0001123478


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-cCCCCCCCChhHHHHHHhhhcCCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-RFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      ++.|+|||++.+..++.++|+|||||++|||++|+.||........+..+..... ........+..+.++|++||..+|
T Consensus       180 ~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P  259 (297)
T cd06659         180 TPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREP  259 (297)
T ss_pred             CccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCc
Confidence            9999999999998999999999999999999999999986554333332221111 112223567889999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ++||+    +.++++||||...
T Consensus       260 ~~Rps----~~~ll~~~~~~~~  277 (297)
T cd06659         260 QERAT----AQELLDHPFLLQT  277 (297)
T ss_pred             ccCcC----HHHHhhChhhccC
Confidence            99999    7999999999853

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=1.2e-39  Score=346.79  Aligned_cols=254  Identities=20%  Similarity=0.294  Sum_probs=207.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEE-----CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFE  401 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~-----~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~  401 (730)
                      +..++|.+.+.||+|+||.||++.+     ..++..||+|++++...  ......+.+|+++++++ +||||+++++++.
T Consensus        32 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~  109 (302)
T cd05055          32 FPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH--SSEREALMSELKIMSHLGNHENIVNLLGACT  109 (302)
T ss_pred             ccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC--hHHHHHHHHHHHHHHhccCCCCcceEEEEEe
Confidence            5567899999999999999999985     33456899999875422  23446788999999999 8999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      ..+.+|+||||+++|+|..++.......+++.++..++.||+.||.|||++||+|+||||+|||++.++.++|+|||++.
T Consensus       110 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~  189 (302)
T cd05055         110 IGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLAR  189 (302)
T ss_pred             cCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcccc
Confidence            99999999999999999998876544558999999999999999999999999999999999999999999999999984


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      .......                                                                         
T Consensus       190 ~~~~~~~-------------------------------------------------------------------------  196 (302)
T cd05055         190 DIMNDSN-------------------------------------------------------------------------  196 (302)
T ss_pred             cccCCCc-------------------------------------------------------------------------
Confidence            3210000                                                                         


Q ss_pred             ccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHH
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRD  640 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~d  640 (730)
                       ........+++.|+|||++.+..++.++|||||||++|||++ |..||.+......+.+.+......+.....+.++++
T Consensus       197 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (302)
T cd05055         197 -YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRMAQPEHAPAEIYD  275 (302)
T ss_pred             -eeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHHHHHcCCcCCCCCCCCHHHHH
Confidence             000012346788999999999999999999999999999998 999998766555444444443344444456889999


Q ss_pred             HHHhhhcCCCCCcCCch
Q 004790          641 LIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~  657 (730)
                      ||.+||.++|++||++.
T Consensus       276 li~~cl~~~p~~Rpt~~  292 (302)
T cd05055         276 IMKTCWDADPLKRPTFK  292 (302)
T ss_pred             HHHHHcCCCchhCcCHH
Confidence            99999999999999953

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.3e-39  Score=340.77  Aligned_cols=258  Identities=29%  Similarity=0.448  Sum_probs=207.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc--cceeeE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET--DRFSCL  408 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~--~~~l~L  408 (730)
                      ++|+.+++||.|++|.||++.+..+++.||+|.+.+...  ......+.+|+++++.++||||++++++|.+  ...+|+
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   78 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPN--PDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGI   78 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCc--hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEE
Confidence            369999999999999999999999999999999876432  2345668889999999999999999998854  457899


Q ss_pred             EeeecCCCCccccccc--cCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          409 VMEYCPGGDLHTLRQR--QPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~--~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      ||||++|++|.+++..  .....+++..+..++.||+.||.|||+.|++|+||+|+||+++.++.++|+|||++..... 
T Consensus        79 v~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~-  157 (287)
T cd06621          79 AMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVN-  157 (287)
T ss_pred             EEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeeccccccccc-
Confidence            9999999999887653  2235688999999999999999999999999999999999999999999999998732100 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       158 -----------------------------------------------------------------------------~~~  160 (287)
T cd06621         158 -----------------------------------------------------------------------------SLA  160 (287)
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         000


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCC-----ccceeeeeccc-ccCCC----CCCCCh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN-----RATLFNVVGQQ-LRFPD----SPATSY  636 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~-----~~~l~~i~~~~-~~~p~----~~~~s~  636 (730)
                      ....++..|+|||.+.+..++.++|+|||||++|+|++|+.||.....     .+....+.... ..++.    ....+.
T Consensus       161 ~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (287)
T cd06621         161 GTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSE  240 (287)
T ss_pred             ccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHH
Confidence            023578889999999999999999999999999999999999986532     11111111111 11111    123457


Q ss_pred             hHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          637 ASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       637 ~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ++++||.+||.+||.+||+    +.|+++||||...
T Consensus       241 ~~~~li~~~l~~~p~~Rpt----~~eil~~~~~~~~  272 (287)
T cd06621         241 EFKDFIKQCLEKDPTRRPT----PWDMLEHPWIKAQ  272 (287)
T ss_pred             HHHHHHHHHcCCCcccCCC----HHHHHhCcccccc
Confidence            8899999999999999999    7999999999764

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=1.6e-39  Score=341.65  Aligned_cols=257  Identities=21%  Similarity=0.332  Sum_probs=206.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCC-----CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSST-----RCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFE  401 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t-----~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~  401 (730)
                      +..++|++++.||+|+||.||++.+...     ...+|+|++.....  ......+.+|+++++.+ +||||+++++++.
T Consensus         9 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   86 (293)
T cd05053           9 LPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDAT--EKDLSDLVSEMEMMKMIGKHKNIINLLGVCT   86 (293)
T ss_pred             cCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCC--HHHHHHHHHHHHHHHhhcCCCCeeeEEEEEc
Confidence            5567899999999999999999998654     37899999875422  23445688999999999 8999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccc--------------cCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQR--------------QPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR  467 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~--------------~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~  467 (730)
                      .+..+|+||||+++|+|..+++.              .....+++..+..++.||+.||.|||++||+||||||+|||++
T Consensus        87 ~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~  166 (293)
T cd05053          87 QEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVT  166 (293)
T ss_pred             CCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEEc
Confidence            99999999999999999988754              2245788999999999999999999999999999999999999


Q ss_pred             CCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccC
Q 004790          468 DDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSEL  547 (730)
Q Consensus       468 ~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (730)
                      .++.+||+|||+++.......                                                           
T Consensus       167 ~~~~~kL~Dfg~~~~~~~~~~-----------------------------------------------------------  187 (293)
T cd05053         167 EDHVMKIADFGLARDIHHIDY-----------------------------------------------------------  187 (293)
T ss_pred             CCCeEEeCccccccccccccc-----------------------------------------------------------
Confidence            999999999999854211000                                                           


Q ss_pred             CCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccc
Q 004790          548 GLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQL  626 (730)
Q Consensus       548 ~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~  626 (730)
                                     ........++..|+|||++.+..++.++|||||||++|||++ |..||.+....+.. +.+....
T Consensus       188 ---------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~-~~~~~~~  251 (293)
T cd05053         188 ---------------YRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELF-KLLKEGY  251 (293)
T ss_pred             ---------------eeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHHHH-HHHHcCC
Confidence                           000001134677999999999999999999999999999997 99999876543333 3333333


Q ss_pred             cCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       627 ~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      ........+..+.+||.+||..||++||+    +.++++
T Consensus       252 ~~~~~~~~~~~~~~li~~~l~~~p~~Rps----~~eil~  286 (293)
T cd05053         252 RMEKPQNCTQELYHLMRDCWHEVPSQRPT----FKQLVE  286 (293)
T ss_pred             cCCCCCCCCHHHHHHHHHHcccCcccCcC----HHHHHH
Confidence            33444567889999999999999999999    466654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.5e-39  Score=338.30  Aligned_cols=257  Identities=21%  Similarity=0.263  Sum_probs=205.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCC-----CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSST-----RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t-----~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      +..++|++++.||+|+||.||++.++..     +..||+|.+.....  ......+.+|+.+|+.++||||+++++++..
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~   80 (277)
T cd05032           3 LPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENAS--MRERIEFLNEASVMKEFNCHHVVRLLGVVST   80 (277)
T ss_pred             cchHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccC--HHHHHHHHHHHHHHHhCCCCceeEEEEEEcC
Confidence            5567899999999999999999998654     37899999865432  2334567889999999999999999999999


Q ss_pred             cceeeEEeeecCCCCccccccccC--------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEE
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQP--------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIML  474 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~--------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL  474 (730)
                      ....|+||||+++|+|..++....        ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||
T Consensus        81 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl  160 (277)
T cd05032          81 GQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKI  160 (277)
T ss_pred             CCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEE
Confidence            999999999999999998876432        124678889999999999999999999999999999999999999999


Q ss_pred             ecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCC
Q 004790          475 SDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTL  554 (730)
Q Consensus       475 ~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (730)
                      +|||+++.......                                                                  
T Consensus       161 ~dfg~~~~~~~~~~------------------------------------------------------------------  174 (277)
T cd05032         161 GDFGMTRDIYETDY------------------------------------------------------------------  174 (277)
T ss_pred             CCcccchhhccCcc------------------------------------------------------------------
Confidence            99999853210000                                                                  


Q ss_pred             cccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCC
Q 004790          555 PELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPA  633 (730)
Q Consensus       555 ~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~  633 (730)
                              ........+|..|+|||.+.+..++.++|+|||||++|||++ |..||.+.........+. .....+....
T Consensus       175 --------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~  245 (277)
T cd05032         175 --------YRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVI-DGGHLDLPEN  245 (277)
T ss_pred             --------cccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHh-cCCCCCCCCC
Confidence                    000112356788999999998889999999999999999998 999998765444333333 2222233345


Q ss_pred             CChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          634 TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       634 ~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .+.++.+||.+||..+|++||++    .++++
T Consensus       246 ~~~~~~~li~~~l~~~p~~Rpt~----~~l~~  273 (277)
T cd05032         246 CPDKLLELMRMCWQYNPKMRPTF----LEIVS  273 (277)
T ss_pred             CCHHHHHHHHHHcCCChhhCCCH----HHHHH
Confidence            68899999999999999999994    56553

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=2e-39  Score=341.65  Aligned_cols=255  Identities=27%  Similarity=0.447  Sum_probs=210.6

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      .|...+.||.|++|.||++.+..++..+|+|+++....   .....+.+|+.+++.++||||++++++|......|+|+|
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e   96 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQ---QRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVME   96 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccch---hHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEe
Confidence            45666899999999999999999999999999864322   334557889999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+.|++|.+++..   ..+++..+..++.||+.||+|||++||+||||||+||+++.++.++|+|||++.....      
T Consensus        97 ~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~------  167 (285)
T cd06648          97 FLEGGALTDIVTH---TRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSK------  167 (285)
T ss_pred             ccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhcc------
Confidence            9999999988765   3688999999999999999999999999999999999999999999999998732100      


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                            .........|
T Consensus       168 ----------------------------------------------------------------------~~~~~~~~~~  177 (285)
T cd06648         168 ----------------------------------------------------------------------EVPRRKSLVG  177 (285)
T ss_pred             ----------------------------------------------------------------------CCcccccccC
Confidence                                                                                  0000112468


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-cCCCCCCCChhHHHHHHhhhcCCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-RFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      ++.|+|||++.+..++.++|+|||||++|||++|+.||...+....+.++..... .......++..+.+||++||..||
T Consensus       178 ~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p  257 (285)
T cd06648         178 TPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDP  257 (285)
T ss_pred             CccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccCh
Confidence            9999999999998899999999999999999999999987554333333322211 112223367899999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ++||+    +.++++||||+..
T Consensus       258 ~~Rpt----~~~il~~~~~~~~  275 (285)
T cd06648         258 AQRAT----AAELLNHPFLAKA  275 (285)
T ss_pred             hhCcC----HHHHccCcccccC
Confidence            99999    7999999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=9e-40  Score=363.28  Aligned_cols=255  Identities=21%  Similarity=0.292  Sum_probs=205.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCC-----CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCcccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSST-----RCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFE  401 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t-----~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~  401 (730)
                      +..++|++++.||+|+||.||+|++...     +..||||++.....  ....+.+.+|+++|+.++ ||||+++++++.
T Consensus        34 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~--~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~  111 (400)
T cd05105          34 FPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR--SSEKQALMSELKIMTHLGPHLNIVNLLGACT  111 (400)
T ss_pred             ccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCC--hHHHHHHHHHHHHHHhcCCCCCeeeEEEEEc
Confidence            4457899999999999999999987433     34699999965422  233456889999999996 999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccC-------------------------------------------------------
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQP-------------------------------------------------------  426 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~-------------------------------------------------------  426 (730)
                      +...+|||||||++|+|.+++....                                                       
T Consensus       112 ~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (400)
T cd05105         112 KSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPM  191 (400)
T ss_pred             cCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchh
Confidence            9999999999999999988765421                                                       


Q ss_pred             ---------------------------------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec
Q 004790          427 ---------------------------------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR  467 (730)
Q Consensus       427 ---------------------------------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~  467 (730)
                                                             ...+++..+..++.||+.||.|||++||+||||||+|||++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~  271 (400)
T cd05105         192 LEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLA  271 (400)
T ss_pred             hhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEe
Confidence                                                   12477888899999999999999999999999999999999


Q ss_pred             CCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccC
Q 004790          468 DDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSEL  547 (730)
Q Consensus       468 ~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (730)
                      .++.+||+|||+++.......                                                           
T Consensus       272 ~~~~~kL~DfGla~~~~~~~~-----------------------------------------------------------  292 (400)
T cd05105         272 QGKIVKICDFGLARDIMHDSN-----------------------------------------------------------  292 (400)
T ss_pred             CCCEEEEEeCCcceecccccc-----------------------------------------------------------
Confidence            999999999999853210000                                                           


Q ss_pred             CCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccc
Q 004790          548 GLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQL  626 (730)
Q Consensus       548 ~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~  626 (730)
                                     ........+++.|+|||++.+..++.++|||||||++|||++ |..||.+......+...+....
T Consensus       293 ---------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~~~~~~  357 (400)
T cd05105         293 ---------------YVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKIKSGY  357 (400)
T ss_pred             ---------------ccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHHHhcCC
Confidence                           000112357889999999999999999999999999999996 9999987654444444444444


Q ss_pred             cCCCCCCCChhHHHHHHhhhcCCCCCcCCchh
Q 004790          627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKR  658 (730)
Q Consensus       627 ~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~  658 (730)
                      ..+....++.++.+||.+||..||++||++.+
T Consensus       358 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~  389 (400)
T cd05105         358 RMAKPDHATQEVYDIMVKCWNSEPEKRPSFLH  389 (400)
T ss_pred             CCCCCccCCHHHHHHHHHHCccCHhHCcCHHH
Confidence            44555567889999999999999999999643

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=3.6e-39  Score=328.12  Aligned_cols=257  Identities=32%  Similarity=0.490  Sum_probs=214.0

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc--ceeeEE
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD--RFSCLV  409 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~--~~l~LV  409 (730)
                      +|++.+.||+|++|.||+|.+..+++.|++|++...... ......+.+|+++++.++||||+++++.+...  ..+|+|
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv   79 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDS-EEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIF   79 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccc-hHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEE
Confidence            488999999999999999999999999999999766432 34567788999999999999999999999988  899999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+++++|.+++...  ..+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||++........ 
T Consensus        80 ~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~-  156 (260)
T cd06606          80 LEYVSGGSLSSLLKKF--GKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIET-  156 (260)
T ss_pred             EEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEecccccc-
Confidence            9999999999988765  3789999999999999999999999999999999999999999999999999854210000 


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       157 -------------------------------------------------------------------------~~~~~~~  163 (260)
T cd06606         157 -------------------------------------------------------------------------GEGTGSV  163 (260)
T ss_pred             -------------------------------------------------------------------------cccccCC
Confidence                                                                                     0001124


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .++..|+|||.+.+..++.++|+||||+++|+|++|..||...... .....+.............+..+++||.+||..
T Consensus       164 ~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~  243 (260)
T cd06606         164 RGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRR  243 (260)
T ss_pred             CCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHhccccCCCcCCCcccCHHHHHHHHHhCcC
Confidence            6889999999999988999999999999999999999999876522 222222221122222345688999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF  669 (730)
                      ||++||+    +.++++||||
T Consensus       244 ~p~~Rp~----~~~ll~~~~~  260 (260)
T cd06606         244 DPKKRPT----ADELLQHPFL  260 (260)
T ss_pred             ChhhCCC----HHHHhhCCCC
Confidence            9999999    7999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.3e-39  Score=351.68  Aligned_cols=259  Identities=25%  Similarity=0.384  Sum_probs=206.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc-----ce
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD-----RF  405 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~-----~~  405 (730)
                      .+|++++.||+|+||+||++++..+++.||||.+.+... .......+.+|+.+|+.++||||+++++++...     ..
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFD-NRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEeccccc-ccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            579999999999999999999999999999999875432 223345677899999999999999999988654     35


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|+||||+ +++|..++...  ..+++..++.++.||+.||.|||++|++||||||+|||++.++.+||+|||++.....
T Consensus        84 ~~lv~e~~-~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~  160 (337)
T cd07858          84 VYIVYELM-DTDLHQIIRSS--QTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSE  160 (337)
T ss_pred             EEEEEeCC-CCCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccccCC
Confidence            89999999 57888777654  5799999999999999999999999999999999999999999999999999843210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      .                                                                            ...
T Consensus       161 ~----------------------------------------------------------------------------~~~  164 (337)
T cd07858         161 K----------------------------------------------------------------------------GDF  164 (337)
T ss_pred             C----------------------------------------------------------------------------ccc
Confidence            0                                                                            001


Q ss_pred             ccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCcccee---------------eeec------
Q 004790          566 SMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF---------------NVVG------  623 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~---------------~i~~------  623 (730)
                      .....||..|+|||++.+ ..++.++|+|||||++|+|++|+.||.+.+....+.               .+..      
T Consensus       165 ~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (337)
T cd07858         165 MTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRY  244 (337)
T ss_pred             ccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHH
Confidence            113467899999999875 458999999999999999999999997653211110               0000      


Q ss_pred             --c---c--ccC-CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          624 --Q---Q--LRF-PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       624 --~---~--~~~-p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                        .   .  ..+ ...+..+.++++||++||..||++||+    ++++++||||..+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps----~~ell~h~~~~~~~  298 (337)
T cd07858         245 IRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRIT----VEEALAHPYLASLH  298 (337)
T ss_pred             HHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccC----HHHHHcCcchhhhc
Confidence              0   0  000 012356888999999999999999999    79999999998653

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-40  Score=362.42  Aligned_cols=248  Identities=27%  Similarity=0.460  Sum_probs=220.4

Q ss_pred             cCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          324 RDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       324 ~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      ..+++.++...-++.||.|+.|.||+|+.+.  ..||||.++.-          -.++++.|+.|+||||+.+.+++...
T Consensus       117 e~WeiPFe~IsELeWlGSGaQGAVF~Grl~n--etVAVKKV~el----------kETdIKHLRkLkH~NII~FkGVCtqs  184 (904)
T KOG4721|consen  117 ELWEIPFEEISELEWLGSGAQGAVFLGRLHN--ETVAVKKVREL----------KETDIKHLRKLKHPNIITFKGVCTQS  184 (904)
T ss_pred             hhccCCHHHhhhhhhhccCcccceeeeeccC--ceehhHHHhhh----------hhhhHHHHHhccCcceeeEeeeecCC
Confidence            3456777778888999999999999999864  46999976421          13678889999999999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ..+|||||||..|-|..+|+..  ..+.......|..+|+.|+.|||.+.|||||||.-||||..+..|||+|||-++..
T Consensus       185 PcyCIiMEfCa~GqL~~VLka~--~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~  262 (904)
T KOG4721|consen  185 PCYCIIMEFCAQGQLYEVLKAG--RPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKEL  262 (904)
T ss_pred             ceeEEeeeccccccHHHHHhcc--CccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccchHhh
Confidence            9999999999999999988765  57888888899999999999999999999999999999999999999999987431


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      .                                                    +                         .
T Consensus       263 ~----------------------------------------------------~-------------------------~  265 (904)
T KOG4721|consen  263 S----------------------------------------------------D-------------------------K  265 (904)
T ss_pred             h----------------------------------------------------h-------------------------h
Confidence            0                                                    0                         0


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ...|+|+||..|||||+|+.++.+.++|||||||+|||||||..||+..+....++-+-...+.+|.+..+++.++=||+
T Consensus       266 STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVGsNsL~LpvPstcP~GfklL~K  345 (904)
T KOG4721|consen  266 STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKLLLK  345 (904)
T ss_pred             hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchheeEEeccCCcccccCcccCchHHHHHHH
Confidence            13478999999999999999999999999999999999999999999998888998888888899998899999999999


Q ss_pred             hhhcCCCCCcCCchhcHHHHHcC
Q 004790          644 GLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       644 ~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      +||.-.|..||+|    .+||.|
T Consensus       346 qcw~sKpRNRPSF----rqil~H  364 (904)
T KOG4721|consen  346 QCWNSKPRNRPSF----RQILLH  364 (904)
T ss_pred             HHHhcCCCCCccH----HHHHHH
Confidence            9999999999995    778877

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=2.2e-39  Score=346.33  Aligned_cols=256  Identities=28%  Similarity=0.400  Sum_probs=211.5

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      .|..+++||+|+||+||+|++..++..||+|++.............+.+|+++++.++||||+++++++.++...|+|||
T Consensus        22 ~~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  101 (313)
T cd06633          22 IFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVME  101 (313)
T ss_pred             HhhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEe
Confidence            37778899999999999999999999999999976554444555678889999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+. |+|..++... ...+++..+..++.||+.||.|||++||+||||||+||+++.++.+||+|||++....       
T Consensus       102 ~~~-~~l~~~l~~~-~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~-------  172 (313)
T cd06633         102 YCL-GSASDLLEVH-KKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSS-------  172 (313)
T ss_pred             cCC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccC-------
Confidence            995 5676665543 2468999999999999999999999999999999999999999999999999872100       


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                               ......|
T Consensus       173 -------------------------------------------------------------------------~~~~~~~  179 (313)
T cd06633         173 -------------------------------------------------------------------------PANSFVG  179 (313)
T ss_pred             -------------------------------------------------------------------------CCCCccc
Confidence                                                                                     0012468


Q ss_pred             CcccCChhhhc---cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          572 THEYLAPEIIK---GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       572 T~~Y~APEvl~---g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      +..|+|||++.   ...++.++|+|||||++|+|++|..||...+....+..+............++..+++||.+||.+
T Consensus       180 ~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  259 (313)
T cd06633         180 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVDYCLQK  259 (313)
T ss_pred             cccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccC
Confidence            88999999985   355788999999999999999999999876554444443332222222335677899999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      +|.+||+    +.++++||||+..+
T Consensus       260 ~P~~Rp~----~~~~l~~~~~~~~~  280 (313)
T cd06633         260 IPQERPA----SAELLRHDFVRRDR  280 (313)
T ss_pred             ChhhCcC----HHHHhcCcccCCCc
Confidence            9999999    79999999998643

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-39  Score=330.80  Aligned_cols=250  Identities=48%  Similarity=0.824  Sum_probs=213.2

Q ss_pred             EccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCc
Q 004790          339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL  418 (730)
Q Consensus       339 LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL  418 (730)
                      ||.|+||.||++.+..+++.||+|++++...........+.+|+++++.++||||+++++.++.+...|+||||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            69999999999999988999999999887665555677889999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCC
Q 004790          419 HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSD  498 (730)
Q Consensus       419 ~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~  498 (730)
                      .+++...  ..+++..+..++.||+.||.|||+.+++|+||||+||+++.++.++|+|||++.......           
T Consensus        81 ~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~-----------  147 (250)
T cd05123          81 FSHLSKE--GRFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEG-----------  147 (250)
T ss_pred             HHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccCC-----------
Confidence            9988765  468999999999999999999999999999999999999999999999999874321000           


Q ss_pred             CCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCCh
Q 004790          499 PSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAP  578 (730)
Q Consensus       499 ~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~AP  578 (730)
                                                                                       .......|+..|+||
T Consensus       148 -----------------------------------------------------------------~~~~~~~~~~~~~~P  162 (250)
T cd05123         148 -----------------------------------------------------------------SRTNTFCGTPEYLAP  162 (250)
T ss_pred             -----------------------------------------------------------------CcccCCcCCccccCh
Confidence                                                                             001124688899999


Q ss_pred             hhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchh
Q 004790          579 EIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKR  658 (730)
Q Consensus       579 Evl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~  658 (730)
                      |.+.+..++.++|+||||+++|+|++|..||...+.......+......+  ....+..+.+||++||..||++||+.+.
T Consensus       163 e~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         163 EVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILKDPLRF--PEFLSPEARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             HHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCC--CCCCCHHHHHHHHHHhcCCHhhCCCccc
Confidence            99999889999999999999999999999998765544444444433333  3456889999999999999999999533


Q ss_pred             cHHHHHcCCCC
Q 004790          659 GATEIKQHPFF  669 (730)
Q Consensus       659 ~a~elL~HPfF  669 (730)
                       ++++++||||
T Consensus       241 -~~~l~~~~~f  250 (250)
T cd05123         241 -AEEIKAHPFF  250 (250)
T ss_pred             -HHHHHhCCCC
Confidence             4899999998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=2.7e-39  Score=383.85  Aligned_cols=269  Identities=21%  Similarity=0.291  Sum_probs=207.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +++|+++++||+|+||.||+|++..+++.||||++.+..........++.+|+++++.++||||+++++++.+++..|+|
T Consensus         1 igrYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLV   80 (932)
T PRK13184          1 MQRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYT   80 (932)
T ss_pred             CCCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEE
Confidence            46899999999999999999999999999999999765444444556788999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccC---------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          410 MEYCPGGDLHTLRQRQP---------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~---------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      |||++||+|..++....         ...++...+..++.||+.||+|||++||+||||||+|||++.+|.+||+|||++
T Consensus        81 MEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLA  160 (932)
T PRK13184         81 MPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAA  160 (932)
T ss_pred             EEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCcc
Confidence            99999999998775421         123455677889999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +............      .                   .+....|                        .         
T Consensus       161 k~i~~~~~~~~~l------~-------------------~~~~~s~------------------------~---------  182 (932)
T PRK13184        161 IFKKLEEEDLLDI------D-------------------VDERNIC------------------------Y---------  182 (932)
T ss_pred             eeccccccccccc------c-------------------ccccccc------------------------c---------
Confidence            6531110000000      0                   0000000                        0         


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceee-eecccccCCCCCCCChhHH
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPDSPATSYASR  639 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~-i~~~~~~~p~~~~~s~~~~  639 (730)
                      .........+||+.|+|||++.+..++.++|||||||++|||++|+.||.+......... .+...........++..+.
T Consensus       183 s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~~~~~i~~P~~~~p~~~iP~~L~  262 (932)
T PRK13184        183 SSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKISYRDVILSPIEVAPYREIPPFLS  262 (932)
T ss_pred             cccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhhhhhhccChhhccccccCCHHHH
Confidence            000111245899999999999999999999999999999999999999987544322221 1112222222345788899


Q ss_pred             HHHHhhhcCCCCCcCCc
Q 004790          640 DLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~  656 (730)
                      +++.+||..||++|++.
T Consensus       263 ~LI~rcL~~DP~kR~ss  279 (932)
T PRK13184        263 QIAMKALAVDPAERYSS  279 (932)
T ss_pred             HHHHHHccCChhhCcCH
Confidence            99999999999999985

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-39  Score=334.82  Aligned_cols=248  Identities=25%  Similarity=0.341  Sum_probs=205.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|++.+.||+|+||.||+|.+.. ++.||+|.++.....    ...+.+|+.+++.++||||+++++++...+..|
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~~-~~~v~iK~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   77 (261)
T cd05068           3 IDRTSIQLLRKLGAGQFGEVWEGLWNN-TTPVAVKTLKPGTMD----PKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIY   77 (261)
T ss_pred             cchhheeeEEEecccCCccEEEEEecC-CeEEEEEeeCCCccc----HHHHHHHHHHHHHCCCCCccceeEEEecCCCee
Confidence            445789999999999999999999765 467999998765432    344778999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+++++|.+++....+..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++.......
T Consensus        78 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~  157 (261)
T cd05068          78 IVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDI  157 (261)
T ss_pred             eeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCc
Confidence            99999999999998876655678999999999999999999999999999999999999999999999999985431000


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       158 ---------------------------------------------------------------------------~~~~~  162 (261)
T cd05068         158 ---------------------------------------------------------------------------YEARE  162 (261)
T ss_pred             ---------------------------------------------------------------------------ccccC
Confidence                                                                                       00000


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...++..|+|||++.+..++.++|+|||||++|||++ |+.||.+......+..+. .....+.....+..+.+||.+||
T Consensus       163 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l  241 (261)
T cd05068         163 GAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVD-QGYRMPCPPGCPKELYDIMLDCW  241 (261)
T ss_pred             CCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCCCCCCCcCCHHHHHHHHHHh
Confidence            1123568999999999999999999999999999998 999998866554444333 33344445567899999999999


Q ss_pred             cCCCCCcCCc
Q 004790          647 VKEPQHRLGV  656 (730)
Q Consensus       647 ~~DP~~R~t~  656 (730)
                      ..||++||++
T Consensus       242 ~~~P~~Rp~~  251 (261)
T cd05068         242 KEDPDDRPTF  251 (261)
T ss_pred             hcCcccCCCH
Confidence            9999999995

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-41  Score=322.97  Aligned_cols=259  Identities=26%  Similarity=0.441  Sum_probs=213.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      .+|...++||+|.||+||+|+.+.++..||+|.++.+.- ++..-..+.+|+.+|+.|+|.|||+|++....+..+-||+
T Consensus         2 ~~ydkmekigegtygtvfkarn~~t~eivalkrvrlddd-degvpssalreicllkelkhknivrl~dvlhsdkkltlvf   80 (292)
T KOG0662|consen    2 QKYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF   80 (292)
T ss_pred             cchHHHHhhcCCcceeeEecccCCccceEEEEEEeccCC-CCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeH
Confidence            357778899999999999999999999999999876532 2223356789999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||| ..+|..+.... .+.++.+.++.++.|++.||.|+|++++.||||||+|+||+.+|.+||+|||+++.+.....  
T Consensus        81 e~c-dqdlkkyfdsl-ng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafgipvr--  156 (292)
T KOG0662|consen   81 EFC-DQDLKKYFDSL-NGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVR--  156 (292)
T ss_pred             HHh-hHHHHHHHHhc-CCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCCceE--
Confidence            999 67787766554 35789999999999999999999999999999999999999999999999999965421100  


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                         |+                                       ..-+
T Consensus       157 -----------------------------------cy---------------------------------------saev  162 (292)
T KOG0662|consen  157 -----------------------------------CY---------------------------------------SAEV  162 (292)
T ss_pred             -----------------------------------ee---------------------------------------ecee
Confidence                                               00                                       1126


Q ss_pred             cCcccCChhhhccCC-CCCcceeechhHHHHHHh-hCCCCCCCCCCccceeeeecc-------cc----------cCCCC
Q 004790          571 GTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLFNVVGQ-------QL----------RFPDS  631 (730)
Q Consensus       571 GT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELl-tG~~PF~g~~~~~~l~~i~~~-------~~----------~~p~~  631 (730)
                      -|.+|++|.++.|.. |+...|+||.|||+.|+. .|++.|.|.+-.+++.+|...       ++          .+|..
T Consensus       163 vtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~y  242 (292)
T KOG0662|consen  163 VTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIY  242 (292)
T ss_pred             eeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCc
Confidence            799999999999876 789999999999999999 699999998877777655421       00          11111


Q ss_pred             ----------CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          632 ----------PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       632 ----------~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                                +..+...+||++++|.-+|.+|++    |+++++||||.+.
T Consensus       243 pattswsqivp~lns~grdllqkll~cnp~qris----aeaalqhpyf~d~  289 (292)
T KOG0662|consen  243 PATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRIS----AEAALQHPYFSDF  289 (292)
T ss_pred             cccchHHHHhhhhcchhHHHHHHHhccCcccccC----HHHHhcCcccccc
Confidence                      233456689999999999999999    8999999999863

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=1.6e-39  Score=339.75  Aligned_cols=254  Identities=28%  Similarity=0.423  Sum_probs=211.9

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      -|++++.||.|+||.||+|.+..++..||||++.....  ......+.+|+.+++.++||||++++++|..+..+|+|||
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   82 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME   82 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEE
Confidence            37889999999999999999999999999999865432  2344678899999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+++++|..++..   ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++.....      
T Consensus        83 ~~~~~~l~~~i~~---~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~------  153 (277)
T cd06641          83 YLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTD------  153 (277)
T ss_pred             eCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceeccc------
Confidence            9999999988764   3688999999999999999999999999999999999999999999999998743210      


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                            .........|
T Consensus       154 ----------------------------------------------------------------------~~~~~~~~~~  163 (277)
T cd06641         154 ----------------------------------------------------------------------TQIKRNTFVG  163 (277)
T ss_pred             ----------------------------------------------------------------------chhhhccccC
Confidence                                                                                  0000112468


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQ  651 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~  651 (730)
                      +..|+|||++.+..++.++|+|||||++|+|++|..||...........+..... ......++.++.++|.+||..+|.
T Consensus       164 ~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~~p~  242 (277)
T cd06641         164 TPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNP-PTLEGNYSKPLKEFVEACLNKEPS  242 (277)
T ss_pred             CccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHHHHHHHhcCCC-CCCCcccCHHHHHHHHHHccCChh
Confidence            8899999999988889999999999999999999999986554333333322211 112235678999999999999999


Q ss_pred             CcCCchhcHHHHHcCCCCCC
Q 004790          652 HRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       652 ~R~t~~~~a~elL~HPfF~~  671 (730)
                      +||+    +.++++||||..
T Consensus       243 ~Rp~----~~~~l~~~~~~~  258 (277)
T cd06641         243 FRPT----AKELLKHKFIVR  258 (277)
T ss_pred             hCcC----HHHHHhCHHHhh
Confidence            9999    799999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=4.1e-39  Score=326.41  Aligned_cols=252  Identities=31%  Similarity=0.513  Sum_probs=211.9

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|.+.+.||+|++|.||++.+..+++.+++|++.....   .....+.+|+++++.++||||++++++|..+...|++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e   77 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK---EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVME   77 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch---hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEe
Confidence            58899999999999999999998999999999976543   345678899999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |++|++|.+++.... ..+++..+..++.|++.||.|||.+|++||||+|+||+++.++.++|+|||++......     
T Consensus        78 ~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~-----  151 (253)
T cd05122          78 FCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDT-----  151 (253)
T ss_pred             cCCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeecccccccccc-----
Confidence            999999998876643 46899999999999999999999999999999999999999999999999987432100     


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                            .  ......|
T Consensus       152 ----------------------------------------------------------------------~--~~~~~~~  159 (253)
T cd05122         152 ----------------------------------------------------------------------K--ARNTMVG  159 (253)
T ss_pred             ----------------------------------------------------------------------c--cccceec
Confidence                                                                                  0  0123468


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-ccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-QQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      +..|+|||++.+..++.++|+||||+++|+|++|+.||...+....+..+.. .....+....++..+.++|.+||..||
T Consensus       160 ~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p  239 (253)
T cd05122         160 TPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNP  239 (253)
T ss_pred             CCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcCCCCcCcccccCHHHHHHHHHHccCCh
Confidence            8999999999988899999999999999999999999987644333332222 122223333347889999999999999


Q ss_pred             CCcCCchhcHHHHHcCCC
Q 004790          651 QHRLGVKRGATEIKQHPF  668 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPf  668 (730)
                      ++||+    +.++++|||
T Consensus       240 ~~R~t----~~~~l~~~~  253 (253)
T cd05122         240 EKRPT----AEQLLKHPF  253 (253)
T ss_pred             hhCCC----HHHHhcCCC
Confidence            99999    799999998

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.4e-39  Score=328.63  Aligned_cols=254  Identities=29%  Similarity=0.477  Sum_probs=215.6

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++.+.||+|++|.||++++..+++.||+|.+.+.... ......+.+|+++++.++||||+++++++.++...|+|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIK-EEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILE   79 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccC-HHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEe
Confidence            588999999999999999999999999999999876543 2455678999999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+++++|.+++...  ..+++..++.++.|++.||.|||++||+||||||+||+++.++.++|+|||++.......    
T Consensus        80 ~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~----  153 (254)
T cd06627          80 YAENGSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVS----  153 (254)
T ss_pred             cCCCCcHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCc----
Confidence            99999999988765  578999999999999999999999999999999999999999999999999985421000    


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                              .......|
T Consensus       154 ------------------------------------------------------------------------~~~~~~~~  161 (254)
T cd06627         154 ------------------------------------------------------------------------KDDASVVG  161 (254)
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    00112367


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQ  651 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~  651 (730)
                      +..|+|||.+.+..++.++|+|+||+++|+|++|+.||........+.++.... ..+.....+..++++|.+||..+|+
T Consensus       162 ~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~p~  240 (254)
T cd06627         162 TPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDD-HPPLPEGISPELKDFLMQCFQKDPN  240 (254)
T ss_pred             chhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhccC-CCCCCCCCCHHHHHHHHHHHhCChh
Confidence            889999999998889999999999999999999999998765444443333221 1223345788999999999999999


Q ss_pred             CcCCchhcHHHHHcCCCC
Q 004790          652 HRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       652 ~R~t~~~~a~elL~HPfF  669 (730)
                      +||+    +.+++.||||
T Consensus       241 ~R~~----~~~~l~~~~~  254 (254)
T cd06627         241 LRPT----AKQLLKHPWI  254 (254)
T ss_pred             hCcC----HHHHhcCCCC
Confidence            9999    7999999998

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=2.6e-39  Score=340.51  Aligned_cols=250  Identities=23%  Similarity=0.339  Sum_probs=204.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEE-----CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~-----~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      ..+|.+.+.||+|+||+||++.+     ..++..+|+|.+.+..   ......+.+|+++|+.++||||+++++++....
T Consensus         4 ~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (288)
T cd05093           4 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS---DNARKDFHREAELLTNLQHEHIVKFYGVCVEGD   80 (288)
T ss_pred             hHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC---HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC
Confidence            35799999999999999999986     3345679999987543   234556889999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccC-----------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceE
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQP-----------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIM  473 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~-----------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vK  473 (730)
                      .+|+||||+++++|..++..+.           ...+++..++.++.||+.||+|||++||+||||||+|||++.++.+|
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~k  160 (288)
T cd05093          81 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVK  160 (288)
T ss_pred             ccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEE
Confidence            9999999999999988876432           13589999999999999999999999999999999999999999999


Q ss_pred             EecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCC
Q 004790          474 LSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSST  553 (730)
Q Consensus       474 L~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (730)
                      |+|||++..+....                                                                  
T Consensus       161 l~dfg~~~~~~~~~------------------------------------------------------------------  174 (288)
T cd05093         161 IGDFGMSRDVYSTD------------------------------------------------------------------  174 (288)
T ss_pred             eccCCccccccCCc------------------------------------------------------------------
Confidence            99999984321000                                                                  


Q ss_pred             CcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCC
Q 004790          554 LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSP  632 (730)
Q Consensus       554 ~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~  632 (730)
                              .........+++.|+|||++.+..++.++|+|||||++|+|++ |..||.+......+..+..+.. .+...
T Consensus       175 --------~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~~~~i~~~~~-~~~~~  245 (288)
T cd05093         175 --------YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRV-LQRPR  245 (288)
T ss_pred             --------eeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCc-CCCCC
Confidence                    0000012356788999999999999999999999999999998 9999987765555545544332 22234


Q ss_pred             CCChhHHHHHHhhhcCCCCCcCCch
Q 004790          633 ATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       633 ~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      ..+.++.+||.+||..||.+||++.
T Consensus       246 ~~~~~l~~li~~~l~~~p~~Rpt~~  270 (288)
T cd05093         246 TCPKEVYDLMLGCWQREPHMRLNIK  270 (288)
T ss_pred             CCCHHHHHHHHHHccCChhhCCCHH
Confidence            5788999999999999999999954

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.1e-39  Score=349.40  Aligned_cols=261  Identities=26%  Similarity=0.384  Sum_probs=210.5

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc-----ee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR-----FS  406 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~-----~l  406 (730)
                      +|++.+.||.|+||.||+|++..++..||||++.+.. ........+.+|+.+++.++||||+++++++....     .+
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVF-DDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDV   79 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeecccc-ccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccce
Confidence            5899999999999999999999999999999987643 22344567889999999999999999999998775     78


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+. ++|..++.+.  ..+++..++.++.||+.||+|||++||+||||||+|||++.++.++|+|||++......
T Consensus        80 ~lv~e~~~-~~l~~~l~~~--~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~  156 (330)
T cd07834          80 YIVTELME-TDLHKVIKSP--QPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPD  156 (330)
T ss_pred             EEEecchh-hhHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeeccc
Confidence            99999996 5888877654  47999999999999999999999999999999999999999999999999998542110


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ..                                                                         .....
T Consensus       157 ~~-------------------------------------------------------------------------~~~~~  163 (330)
T cd07834         157 ED-------------------------------------------------------------------------EKGFL  163 (330)
T ss_pred             cc-------------------------------------------------------------------------ccccc
Confidence            00                                                                         00001


Q ss_pred             cccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-------------------
Q 004790          567 MSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-------------------  626 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-------------------  626 (730)
                      ....+|+.|+|||++.+. .++.++|+|||||++|+|++|++||.+.+....+..+.....                   
T Consensus       164 ~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  243 (330)
T cd07834         164 TEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYL  243 (330)
T ss_pred             cccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHH
Confidence            124689999999999988 789999999999999999999999987654332222111000                   


Q ss_pred             -------cCC---CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          627 -------RFP---DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       627 -------~~p---~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                             ..+   ..+..+.++.+||++||.+||.+||+    ++++++||||+++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt----~~~ll~~~~~~~~~  296 (330)
T cd07834         244 KSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRIT----ADEALAHPYLAQLH  296 (330)
T ss_pred             hhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCC----HHHHHhCccHHhhc
Confidence                   000   01235788999999999999999999    68999999999743

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=1.1e-39  Score=346.70  Aligned_cols=257  Identities=25%  Similarity=0.344  Sum_probs=200.0

Q ss_pred             CcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCccccc
Q 004790          343 DIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLR  422 (730)
Q Consensus       343 ~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL~~ll  422 (730)
                      ++|.||+++...+++.||||++..... .......+.+|+++++.++||||++++++|.++...|++|||+++++|..++
T Consensus        12 ~~~~v~~~~~~~~~~~~avK~~~~~~~-~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l   90 (314)
T cd08216          12 DLMIVHLAKHKPTNTLVAVKKINLDSC-SKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLL   90 (314)
T ss_pred             CCceEEEEEecCCCCEEEEEEEecccc-chhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHH
Confidence            556677777777899999999976532 3356678999999999999999999999999999999999999999999988


Q ss_pred             cccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCC
Q 004790          423 QRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRR  502 (730)
Q Consensus       423 ~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~  502 (730)
                      .......+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||.+.........             
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~-------------  157 (314)
T cd08216          91 KTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKR-------------  157 (314)
T ss_pred             HHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeecccccc-------------
Confidence            7655567899999999999999999999999999999999999999999999999988542100000             


Q ss_pred             CCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhc
Q 004790          503 GPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIK  582 (730)
Q Consensus       503 ~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~  582 (730)
                                                            ..                  ..........++..|+|||++.
T Consensus       158 --------------------------------------~~------------------~~~~~~~~~~~~~~y~aPE~~~  181 (314)
T cd08216         158 --------------------------------------QR------------------VVHDFPKSSVKNLPWLSPEVLQ  181 (314)
T ss_pred             --------------------------------------cc------------------ccccccccccccccccCHHHhc
Confidence                                                  00                  0000112346788999999997


Q ss_pred             cC--CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc--------------------------------cccC
Q 004790          583 GE--GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--------------------------------QLRF  628 (730)
Q Consensus       583 g~--~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~--------------------------------~~~~  628 (730)
                      +.  .++.++|+|||||++|||++|+.||........+.....+                                ....
T Consensus       182 ~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (314)
T cd08216         182 QNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDH  261 (314)
T ss_pred             CCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhc
Confidence            74  5889999999999999999999999865432221111000                                0001


Q ss_pred             CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       629 p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      +.....+.++.+||++||.+||++||+    +.++++||||+.+.
T Consensus       262 ~~~~~~~~~~~~li~~~l~~~P~~Rpt----~~~ll~~p~~~~~~  302 (314)
T cd08216         262 PYTRTFSEHFHQFVELCLQRDPESRPS----ASQLLNHSFFKQCK  302 (314)
T ss_pred             chhhHHHHHHHHHHHHHhhcCCCcCcC----HHHHhcCchHhhhc
Confidence            111223467889999999999999999    79999999998653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=3e-39  Score=336.81  Aligned_cols=254  Identities=28%  Similarity=0.431  Sum_probs=203.3

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc---CCCCCccccccccccce----
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL---DHPFLPTLYTHFETDRF----  405 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L---~HPnIV~L~~~f~~~~~----  405 (730)
                      |++++.||.|+||.||+|+++.+++.||+|+++...... .....+.+|+.+++.+   +||||+++++++.....    
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~   79 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEE-GIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDREL   79 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccc-hhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCc
Confidence            788999999999999999999889999999997543222 2234456788777666   69999999999987776    


Q ss_pred             -eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          406 -SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       406 -l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                       +|++|||+. ++|..++.+.....+++..++.++.||+.||.|||+.||+|+||||+|||++.++.+||+|||++....
T Consensus        80 ~~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~  158 (287)
T cd07838          80 KLTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYS  158 (287)
T ss_pred             eeEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceecc
Confidence             999999996 578887776544568999999999999999999999999999999999999999999999999874321


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                             .
T Consensus       159 ~~-----------------------------------------------------------------------------~  161 (287)
T cd07838         159 FE-----------------------------------------------------------------------------M  161 (287)
T ss_pred             CC-----------------------------------------------------------------------------c
Confidence            00                                                                             0


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-----ccc-----------C
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-----QLR-----------F  628 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-----~~~-----------~  628 (730)
                      ......++..|+|||++.+..++.++|+|||||++|||++|++||.+....+.+.++...     ...           +
T Consensus       162 ~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (287)
T cd07838         162 ALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSF  241 (287)
T ss_pred             ccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhc
Confidence            001235788999999999999999999999999999999999999876554433322210     000           0


Q ss_pred             CC---------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          629 PD---------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       629 p~---------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      +.         .+..+..+.+||++||..||.+||+    +.++++||||
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~----~~~il~~~~~  287 (287)
T cd07838         242 PSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRIS----AFEALQHPYF  287 (287)
T ss_pred             ccccccchhhhhhhhhHHHHHHHHHHhccCCccCCC----HHHHhcCcCC
Confidence            00         0234577889999999999999999    7899999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.8e-39  Score=351.50  Aligned_cols=256  Identities=30%  Similarity=0.440  Sum_probs=204.6

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc------
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD------  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~------  403 (730)
                      ..+|.+.+.||+|+||.||+|++..++..||+|++.+... .......+.+|+.+++.++||||++++++|...      
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~   92 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQ-SEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEF   92 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccc-cccchhHHHHHHHHHHhcCCCCccchhheecccccCCCC
Confidence            3689999999999999999999999999999999876432 223345578899999999999999999998754      


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ..+|+||||+. .+|..++.    ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus        93 ~~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~  167 (342)
T cd07879          93 QDFYLVMPYMQ-TDLQKIMG----HPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHA  167 (342)
T ss_pred             ceEEEEecccc-cCHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcCC
Confidence            34699999994 46665442    35899999999999999999999999999999999999999999999999987421


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                              
T Consensus       168 ~~------------------------------------------------------------------------------  169 (342)
T cd07879         168 DA------------------------------------------------------------------------------  169 (342)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-------------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-------------------  623 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-------------------  623 (730)
                       ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.+....+..++.                   
T Consensus       170 -~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
T cd07879         170 -EMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAK  248 (342)
T ss_pred             -CCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchH
Confidence             0012467899999999977 4588999999999999999999999987653322221111                   


Q ss_pred             ----ccccCCC------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          624 ----QQLRFPD------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       624 ----~~~~~p~------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                          ....++.      .+..+.++.+||++||..||.+||+    +++++.||||+.+.+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~----~~e~l~h~~f~~~~~  305 (342)
T cd07879         249 SYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLT----ATEALEHPYFDSFRD  305 (342)
T ss_pred             HHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcC----HHHHhcCcchhhccc
Confidence                0000010      1245778999999999999999999    799999999998754

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=3.2e-39  Score=334.70  Aligned_cols=254  Identities=25%  Similarity=0.307  Sum_probs=206.4

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCC---CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSST---RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t---~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .++|++.+.||+|+||+||+|+++.+   ...||||+++...  .......+.+|+.+|+.++||||+++++.+..+...
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGS--SDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPV   80 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCC--ChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCce
Confidence            35799999999999999999998654   4579999986543  223445678899999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+++++|..++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.++|+|||++......
T Consensus        81 ~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~  159 (266)
T cd05033          81 MIITEYMENGSLDKFLREND-GKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDS  159 (266)
T ss_pred             EEEEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhccccc
Confidence            99999999999999886643 47899999999999999999999999999999999999999999999999998543100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ..                                                                          ....
T Consensus       160 ~~--------------------------------------------------------------------------~~~~  165 (266)
T cd05033         160 EA--------------------------------------------------------------------------TYTT  165 (266)
T ss_pred             cc--------------------------------------------------------------------------ceec
Confidence            00                                                                          0000


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ....+++.|+|||.+.+..++.++|+|||||++|||++ |..||...........+. .....+.....+..+.+||.+|
T Consensus       166 ~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~c  244 (266)
T cd05033         166 KGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVE-DGYRLPPPMDCPSALYQLMLDC  244 (266)
T ss_pred             cCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHHH
Confidence            01235678999999999999999999999999999997 999997655443333332 3334444556789999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHc
Q 004790          646 LVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~  665 (730)
                      |..+|++||++    .++++
T Consensus       245 l~~~p~~Rp~~----~ei~~  260 (266)
T cd05033         245 WQKDRNERPTF----SQIVS  260 (266)
T ss_pred             cCCCcccCcCH----HHHHH
Confidence            99999999994    56554

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=2.3e-39  Score=340.50  Aligned_cols=257  Identities=24%  Similarity=0.333  Sum_probs=205.9

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCC----------------eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCC
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTR----------------CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF  392 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~----------------~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPn  392 (730)
                      ...+|++++.||+|+||.||+|++..++                ..||+|++.....  ......+.+|+++|+.++|||
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~--~~~~~~~~~e~~~l~~l~~~~   80 (296)
T cd05051           3 PRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDAS--DNAREDFLKEVKILSRLSDPN   80 (296)
T ss_pred             chhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccC--HHHHHHHHHHHHHHHhcCCCC
Confidence            3468999999999999999999876543                5689999876532  244567889999999999999


Q ss_pred             CccccccccccceeeEEeeecCCCCccccccccC---------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCcc
Q 004790          393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQP---------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPEN  463 (730)
Q Consensus       393 IV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~---------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeN  463 (730)
                      |++++++|..+...|+||||+++++|..++....         ...+++..++.++.||+.||.|||++||+||||||+|
T Consensus        81 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~N  160 (296)
T cd05051          81 IARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRN  160 (296)
T ss_pred             EeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhc
Confidence            9999999999999999999999999998876542         1268999999999999999999999999999999999


Q ss_pred             EEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCC
Q 004790          464 VLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKP  543 (730)
Q Consensus       464 ILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (730)
                      ||++.++.++|+|||++.......                                                        
T Consensus       161 ili~~~~~~~l~dfg~~~~~~~~~--------------------------------------------------------  184 (296)
T cd05051         161 CLVGKNYTIKIADFGMSRNLYSSD--------------------------------------------------------  184 (296)
T ss_pred             eeecCCCceEEccccceeecccCc--------------------------------------------------------
Confidence            999999999999999984321000                                                        


Q ss_pred             CccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh--CCCCCCCCCCccceeee
Q 004790          544 RSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY--GKTPFKGSGNRATLFNV  621 (730)
Q Consensus       544 ~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt--G~~PF~g~~~~~~l~~i  621 (730)
                                        .........+|+.|+|||++.+..++.++|||||||++|||++  |..||........+.++
T Consensus       185 ------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~  246 (296)
T cd05051         185 ------------------YYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENA  246 (296)
T ss_pred             ------------------ceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChHHHHHHH
Confidence                              0000112356889999999999889999999999999999997  78888765544433322


Q ss_pred             e------cccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          622 V------GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       622 ~------~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .      ......+.....+.++.+||.+||..||++||+    +.+|++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt----~~el~~  292 (296)
T cd05051         247 GHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPT----FREIHL  292 (296)
T ss_pred             HhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCC----HHHHHH
Confidence            2      112223333456789999999999999999999    567643

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=2.7e-39  Score=335.83  Aligned_cols=247  Identities=26%  Similarity=0.345  Sum_probs=201.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|+++++||+|+||.||+|++..++ .||+|++++....    ...+.+|+++++.++||||+++++.+.. ...|
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~~~~-~valK~~~~~~~~----~~~~~~E~~~l~~l~~~~i~~~~~~~~~-~~~~   76 (262)
T cd05071           3 IPRESLRLEVKLGQGCFGEVWMGTWNGTT-RVAIKTLKPGTMS----PEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIY   76 (262)
T ss_pred             CChHHeeEeeecCCCCCCcEEEEEecCCc-eEEEEecccCccC----HHHHHHHHHHHHhCCCCCcceEEEEECC-CCcE
Confidence            34578999999999999999999987665 5999999764321    2357889999999999999999998754 5579


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+++|+|.+++....+..+++..+..++.|++.||.|||++||+||||||+|||++.++.+||+|||++.......
T Consensus        77 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~  156 (262)
T cd05071          77 IVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE  156 (262)
T ss_pred             EEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeeccccc
Confidence            99999999999998876555678999999999999999999999999999999999999999999999999985321000


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                      .                                                                           ....
T Consensus       157 ~---------------------------------------------------------------------------~~~~  161 (262)
T cd05071         157 Y---------------------------------------------------------------------------TARQ  161 (262)
T ss_pred             c---------------------------------------------------------------------------cccc
Confidence            0                                                                           0001


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...++..|+|||++.+..++.++|+|||||++|||++ |..||.+......+..+.. ....+.....+..+.+||.+||
T Consensus       162 ~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~l  240 (262)
T cd05071         162 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER-GYRMPCPPECPESLHDLMCQCW  240 (262)
T ss_pred             CCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHHhc-CCCCCCccccCHHHHHHHHHHc
Confidence            1246778999999999999999999999999999999 8999987665544443322 2233444567889999999999


Q ss_pred             cCCCCCcCCc
Q 004790          647 VKEPQHRLGV  656 (730)
Q Consensus       647 ~~DP~~R~t~  656 (730)
                      ..||++||++
T Consensus       241 ~~~p~~Rp~~  250 (262)
T cd05071         241 RKEPEERPTF  250 (262)
T ss_pred             cCCcccCCCH
Confidence            9999999995

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.9e-39  Score=334.52  Aligned_cols=253  Identities=22%  Similarity=0.304  Sum_probs=200.3

Q ss_pred             eEEEeEEccCCcEEEEEEEECCC---CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc-----
Q 004790          333 FRLLKRLGCGDIGSVYLSELSST---RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR-----  404 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t---~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~-----  404 (730)
                      |++++.||+|+||.||+|.+..+   +..||+|.+..... .......+.+|+++|+.++||||+++++.+....     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   79 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIH-TYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKI   79 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcC-CHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccC
Confidence            67889999999999999987653   47899999875432 2344567899999999999999999999775544     


Q ss_pred             -eeeEEeeecCCCCcccccccc----CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccc
Q 004790          405 -FSCLVMEYCPGGDLHTLRQRQ----PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL  479 (730)
Q Consensus       405 -~l~LVmEy~~GGsL~~ll~~~----~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGl  479 (730)
                       ..|+||||+++|+|..++...    ....+++..++.++.||+.||.|||++||+||||||+|||+++++.+||+|||+
T Consensus        80 ~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~  159 (273)
T cd05035          80 PKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGL  159 (273)
T ss_pred             cccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccc
Confidence             379999999999998876433    124689999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccc
Q 004790          480 SLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVA  559 (730)
Q Consensus       480 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (730)
                      ++........                                                                      
T Consensus       160 ~~~~~~~~~~----------------------------------------------------------------------  169 (273)
T cd05035         160 SKKIYSGDYY----------------------------------------------------------------------  169 (273)
T ss_pred             eeeccccccc----------------------------------------------------------------------
Confidence            8542110000                                                                      


Q ss_pred             ccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhH
Q 004790          560 EPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYAS  638 (730)
Q Consensus       560 e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~  638 (730)
                          .......++..|+|||++.+..++.++|||||||++|||++ |..||.+..+.+.+..+... .........+..+
T Consensus       170 ----~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  244 (273)
T cd05035         170 ----RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHG-NRLKQPEDCLDEL  244 (273)
T ss_pred             ----cccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-CCCCCCcCCCHHH
Confidence                00001234678999999998899999999999999999998 99999876655544333322 2223334678899


Q ss_pred             HHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          639 RDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       639 ~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .++|.+||..||++||++    .++++
T Consensus       245 ~~li~~~l~~~p~~Rp~~----~e~~~  267 (273)
T cd05035         245 YDLMYSCWRADPKDRPTF----TKLRE  267 (273)
T ss_pred             HHHHHHHcCCChhhCcCH----HHHHH
Confidence            999999999999999995    55554

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=3.5e-39  Score=340.66  Aligned_cols=268  Identities=26%  Similarity=0.393  Sum_probs=203.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc-------
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET-------  402 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~-------  402 (730)
                      .++|++++.||.|+||.||+|+++.+++.||||++....... .....+.+|+++|+.++||||+++++++..       
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   85 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKD-GFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKR   85 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCC-CcchhHHHHHHHHHhcCCCCccchhhheecccccccc
Confidence            578999999999999999999999999999999986543222 122345789999999999999999998743       


Q ss_pred             -cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          403 -DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       403 -~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                       ...+|+||||+. ++|...+... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.
T Consensus        86 ~~~~~~lv~~~~~-~~l~~~~~~~-~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  163 (311)
T cd07866          86 KRGSVYMVTPYMD-HDLSGLLENP-SVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLAR  163 (311)
T ss_pred             cCceEEEEEecCC-cCHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccch
Confidence             345799999995 5666655443 3579999999999999999999999999999999999999999999999999985


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      ..........          .  +.                                                     ..
T Consensus       164 ~~~~~~~~~~----------~--~~-----------------------------------------------------~~  178 (311)
T cd07866         164 PYDGPPPNPK----------G--GG-----------------------------------------------------GG  178 (311)
T ss_pred             hccCCCcccc----------c--CC-----------------------------------------------------cc
Confidence            4211000000          0  00                                                     00


Q ss_pred             ccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc----------------
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ----------------  624 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~----------------  624 (730)
                      .........||+.|+|||++.+. .++.++|||||||++|||++|++||.+.+....+..+...                
T Consensus       179 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (311)
T cd07866         179 GTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLP  258 (311)
T ss_pred             cccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcc
Confidence            00112345789999999998765 4789999999999999999999999876543222211100                


Q ss_pred             -------cccCC-----CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          625 -------QLRFP-----DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       625 -------~~~~p-----~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                             ....+     .....+..+.+||++||..||.+||+    +.+++.||||
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t----~~ell~~~~f  311 (311)
T cd07866         259 GCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLT----ASDALEHPYF  311 (311)
T ss_pred             cccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcC----HHHHhcCCCC
Confidence                   00000     01234467889999999999999999    7999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.9e-39  Score=350.66  Aligned_cols=254  Identities=26%  Similarity=0.399  Sum_probs=204.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc------
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD------  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~------  403 (730)
                      .++|.+++.||+|+||.||++.+..+++.||+|++.+... .......+.+|+++++.++||||+++++++...      
T Consensus        16 ~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~   94 (345)
T cd07877          16 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ-SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF   94 (345)
T ss_pred             cCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcch-hhHHHHHHHHHHHHHHHcCCCcccceeeeeeeccccccc
Confidence            4789999999999999999999999999999999976422 223345678899999999999999999988543      


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ...|++++++ |++|..++..   ..+++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++...
T Consensus        95 ~~~~lv~~~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~  170 (345)
T cd07877          95 NDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT  170 (345)
T ss_pred             ccEEEEehhc-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEecccccccc
Confidence            4578999988 8899887764   35899999999999999999999999999999999999999999999999987421


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      .                                                                               
T Consensus       171 ~-------------------------------------------------------------------------------  171 (345)
T cd07877         171 D-------------------------------------------------------------------------------  171 (345)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-----------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-----------------  625 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-----------------  625 (730)
                      .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.+....+..++...                 
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (345)
T cd07877         172 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESAR  251 (345)
T ss_pred             ccccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHH
Confidence            00012467899999999877 467899999999999999999999998654433222111100                 


Q ss_pred             ------ccCCC------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          626 ------LRFPD------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       626 ------~~~p~------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                            ...+.      ....+.++++||.+||.+||.+|++    +.++++||||..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t----~~e~l~h~~f~~  305 (345)
T cd07877         252 NYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRIT----AAQALAHAYFAQ  305 (345)
T ss_pred             HHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCC----HHHHhcChhhhh
Confidence                  00010      1135778999999999999999999    799999999985

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1e-39  Score=341.54  Aligned_cols=257  Identities=21%  Similarity=0.291  Sum_probs=206.5

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCC-----CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSST-----RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t-----~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      +.+.+|++++.||+|+||.||+|++..+     +..||||+++...  .......+.+|+.++..++||||+++++++.+
T Consensus         2 i~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~   79 (283)
T cd05091           2 INLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKA--EGPLREEFKHEAMMRSRLQHPNIVCLLGVVTK   79 (283)
T ss_pred             CCHHHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCC--CHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC
Confidence            3456789999999999999999987543     5789999997543  22344568889999999999999999999999


Q ss_pred             cceeeEEeeecCCCCcccccccc--------------CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQ--------------PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD  468 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~--------------~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~  468 (730)
                      ....++++||+.+++|..++...              ....+++..+..++.||+.||.|||++||+||||||+|||++.
T Consensus        80 ~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~  159 (283)
T cd05091          80 EQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFD  159 (283)
T ss_pred             CCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecC
Confidence            99999999999999998876421              1235788889999999999999999999999999999999999


Q ss_pred             CCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCC
Q 004790          469 DGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELG  548 (730)
Q Consensus       469 ~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (730)
                      ++.+||+|||+++......                                                             
T Consensus       160 ~~~~kl~Dfg~~~~~~~~~-------------------------------------------------------------  178 (283)
T cd05091         160 KLNVKISDLGLFREVYAAD-------------------------------------------------------------  178 (283)
T ss_pred             CCceEecccccccccccch-------------------------------------------------------------
Confidence            9999999999985321000                                                             


Q ss_pred             CCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeeccccc
Q 004790          549 LPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLR  627 (730)
Q Consensus       549 ~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~  627 (730)
                                   .........+++.|+|||++.+..++.++|||||||++|||++ |..||.+......+..+..... 
T Consensus       179 -------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~-  244 (283)
T cd05091         179 -------------YYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIRNRQV-  244 (283)
T ss_pred             -------------heeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCc-
Confidence                         0000112356789999999998889999999999999999997 9999988766555444444332 


Q ss_pred             CCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          628 FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       628 ~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .+.....+..+.+||.+||+.+|.+||+    +++|++
T Consensus       245 ~~~~~~~~~~~~~li~~cl~~~p~~RP~----~~~i~~  278 (283)
T cd05091         245 LPCPDDCPAWVYTLMLECWNEFPSRRPR----FKDIHS  278 (283)
T ss_pred             CCCCCCCCHHHHHHHHHHhCCCcccCCC----HHHHHH
Confidence            2333567889999999999999999999    466654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-40  Score=349.92  Aligned_cols=261  Identities=27%  Similarity=0.403  Sum_probs=214.0

Q ss_pred             cCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC--C----CCcccc
Q 004790          324 RDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH--P----FLPTLY  397 (730)
Q Consensus       324 ~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H--P----nIV~L~  397 (730)
                      ..+....++|.+++.||+|.||+|-.+.+..++..||||+|+.-.    +..+.++-|+++|+.+.+  |    -+|++.
T Consensus        82 ~~gD~l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~----kYreAa~iEi~vLqki~~~DP~g~~rcv~m~  157 (415)
T KOG0671|consen   82 QVGDILTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVD----KYREAALIEIEVLQKINESDPNGKFRCVQMR  157 (415)
T ss_pred             EeccccccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHH----HHhhHHHHHHHHHHHHHhcCCCCceEEEeee
Confidence            344455789999999999999999999999999999999996432    455667889999999932  2    478999


Q ss_pred             ccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---------
Q 004790          398 THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---------  468 (730)
Q Consensus       398 ~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---------  468 (730)
                      ++|.-.++.|||+|.+ |-++++++.......|+..+++.+++|++.+++|||+++++|.||||||||+-.         
T Consensus       158 ~wFdyrghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~  236 (415)
T KOG0671|consen  158 DWFDYRGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNP  236 (415)
T ss_pred             hhhhccCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEecc
Confidence            9999999999999999 889999999888889999999999999999999999999999999999999942         


Q ss_pred             -----------CCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccc
Q 004790          469 -----------DGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNK  537 (730)
Q Consensus       469 -----------~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~  537 (730)
                                 +-+|+|+|||.|+.-                                                      
T Consensus       237 k~~~~~~r~~ks~~I~vIDFGsAtf~------------------------------------------------------  262 (415)
T KOG0671|consen  237 KKKVCFIRPLKSTAIKVIDFGSATFD------------------------------------------------------  262 (415)
T ss_pred             CCccceeccCCCcceEEEecCCccee------------------------------------------------------
Confidence                       235888888877321                                                      


Q ss_pred             cccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccc
Q 004790          538 KKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT  617 (730)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~  617 (730)
                                               .....++|.|..|+|||+++|.+++..+||||+||||+||++|...|++.++.+.
T Consensus       263 -------------------------~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EH  317 (415)
T KOG0671|consen  263 -------------------------HEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEH  317 (415)
T ss_pred             -------------------------ccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHH
Confidence                                     1122467899999999999999999999999999999999999999999887663


Q ss_pred             e---eeeecc------------------cccCCCCC-----------------------CCChhHHHHHHhhhcCCCCCc
Q 004790          618 L---FNVVGQ------------------QLRFPDSP-----------------------ATSYASRDLIRGLLVKEPQHR  653 (730)
Q Consensus       618 l---~~i~~~------------------~~~~p~~~-----------------------~~s~~~~dLI~~lL~~DP~~R  653 (730)
                      +   .+|++.                  .+.+|...                       ..-..+-|||++||.+||.+|
T Consensus       318 LaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~R  397 (415)
T KOG0671|consen  318 LAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARR  397 (415)
T ss_pred             HHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCcccc
Confidence            3   333321                  11112110                       001134599999999999999


Q ss_pred             CCchhcHHHHHcCCCCCCC
Q 004790          654 LGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       654 ~t~~~~a~elL~HPfF~~v  672 (730)
                      +|    +.|+|+||||+..
T Consensus       398 iT----l~EAL~HpFF~~~  412 (415)
T KOG0671|consen  398 IT----LREALSHPFFARL  412 (415)
T ss_pred             cc----HHHHhcCHHhhcC
Confidence            99    7999999999853

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.2e-39  Score=349.79  Aligned_cols=254  Identities=28%  Similarity=0.423  Sum_probs=208.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF----  405 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~----  405 (730)
                      .++|++++.||.|+||.||+|++..+++.||||++.... ........+.+|+.+++.++||||+++++++..+..    
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPF-QSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEeccccc-chhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            467999999999999999999999999999999986542 222344667889999999999999999998876654    


Q ss_pred             --eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          406 --SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       406 --l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                        +|+||||+ |++|.+++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...
T Consensus        93 ~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~  168 (343)
T cd07851          93 QDVYLVTHLM-GADLNNIVKC---QKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHT  168 (343)
T ss_pred             ccEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEccccccccc
Confidence              89999999 7899888765   36999999999999999999999999999999999999999999999999998431


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                              
T Consensus       169 ~~------------------------------------------------------------------------------  170 (343)
T cd07851         169 DD------------------------------------------------------------------------------  170 (343)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc----------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL----------------  626 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~----------------  626 (730)
                       ......+|..|+|||++.+. .++.++|||||||++|||++|+.||.+......+..+.....                
T Consensus       171 -~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  249 (343)
T cd07851         171 -EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESAR  249 (343)
T ss_pred             -cccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHH
Confidence             01123678899999998764 578999999999999999999999987655433332221100                


Q ss_pred             ------------cCC-CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          627 ------------RFP-DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       627 ------------~~p-~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                                  .+. .....+.++.+||.+||..||++||+    +.+|++||||+.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt----~~ell~h~~~~~  303 (343)
T cd07851         250 NYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRIT----AAEALAHPYLAE  303 (343)
T ss_pred             HHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCC----HHHHhcCCCccc
Confidence                        000 01235788999999999999999999    799999999995

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=3.4e-39  Score=337.31  Aligned_cols=256  Identities=19%  Similarity=0.270  Sum_probs=205.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      .++|++.+.||+|+||.||+|.+..     ++..||+|.+.....  ......+.+|+.+++.++|+||+++++++.+..
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   82 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCS--EQDESDFLMEALIMSKFNHQNIVRLIGVSFERL   82 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCC--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC
Confidence            4679999999999999999999987     778999998864322  233355788999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCC-----CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC---ceEEec
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPG-----KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG---HIMLSD  476 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~-----~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g---~vKL~D  476 (730)
                      ..|+||||++|++|..++.....     ..+++..+..++.||+.||.|||++|++||||||+|||++.++   .+||+|
T Consensus        83 ~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~d  162 (277)
T cd05036          83 PRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIAD  162 (277)
T ss_pred             CcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEecc
Confidence            99999999999999998765421     2588999999999999999999999999999999999998755   699999


Q ss_pred             ccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcc
Q 004790          477 FDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPE  556 (730)
Q Consensus       477 FGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (730)
                      ||+++.+.....                                                                    
T Consensus       163 fg~~~~~~~~~~--------------------------------------------------------------------  174 (277)
T cd05036         163 FGMARDIYRASY--------------------------------------------------------------------  174 (277)
T ss_pred             CccccccCCccc--------------------------------------------------------------------
Confidence            999854210000                                                                    


Q ss_pred             cccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCC
Q 004790          557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATS  635 (730)
Q Consensus       557 ~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s  635 (730)
                            ........++..|+|||++.+..++.++|||||||++|||++ |+.||.+.........+. ..........++
T Consensus       175 ------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~-~~~~~~~~~~~~  247 (277)
T cd05036         175 ------YRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVT-GGGRLDPPKGCP  247 (277)
T ss_pred             ------eecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH-cCCcCCCCCCCC
Confidence                  000001234568999999999999999999999999999996 999998765544333222 222223335678


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      ..+.+||++||..||++||+    +.++++|
T Consensus       248 ~~~~~~i~~cl~~~p~~Rps----~~~vl~~  274 (277)
T cd05036         248 GPVYRIMTDCWQHTPEDRPN----FATILER  274 (277)
T ss_pred             HHHHHHHHHHcCCCcccCcC----HHHHHHH
Confidence            89999999999999999999    5777765

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=4.6e-39  Score=348.37  Aligned_cols=258  Identities=26%  Similarity=0.391  Sum_probs=202.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc-------
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD-------  403 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~-------  403 (730)
                      .+|++++.||.|+||.||+|.++.+++.||+|++.....   ...+.+.+|+++|+.++||||+++++++...       
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~---~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~   81 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDP---QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTED   81 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCC---chHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccc
Confidence            689999999999999999999999999999999866533   3345678899999999999999999877654       


Q ss_pred             -------ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-CCceEEe
Q 004790          404 -------RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-DGHIMLS  475 (730)
Q Consensus       404 -------~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-~g~vKL~  475 (730)
                             ..+|+||||+. ++|..++..   ..+++..++.++.||+.||.|||++||+||||||+|||++. ++.+||+
T Consensus        82 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~  157 (342)
T cd07854          82 VGSLTELNSVYIVQEYME-TDLANVLEQ---GPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIG  157 (342)
T ss_pred             cccccccceEEEEeeccc-ccHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEEC
Confidence                   35899999995 688777654   36899999999999999999999999999999999999974 5678999


Q ss_pred             cccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCc
Q 004790          476 DFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLP  555 (730)
Q Consensus       476 DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (730)
                      |||++........                                                                   
T Consensus       158 dfg~~~~~~~~~~-------------------------------------------------------------------  170 (342)
T cd07854         158 DFGLARIVDPHYS-------------------------------------------------------------------  170 (342)
T ss_pred             CcccceecCCccc-------------------------------------------------------------------
Confidence            9999843210000                                                                   


Q ss_pred             ccccccccccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc----------
Q 004790          556 ELVAEPTAARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ----------  624 (730)
Q Consensus       556 ~~~~e~~~~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~----------  624 (730)
                            ........+||..|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+.......++..          
T Consensus       171 ------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T cd07854         171 ------HKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRN  244 (342)
T ss_pred             ------cccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhh
Confidence                  0000011257889999998765 45788999999999999999999999765432222111100          


Q ss_pred             ---------------cccCC---CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          625 ---------------QLRFP---DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       625 ---------------~~~~p---~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                                     ....+   ..+..+.++++||++||..||.+||+    +.++++||||+.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~ell~h~~~~~~  306 (342)
T cd07854         245 ELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLT----AEEALMHPYMSCY  306 (342)
T ss_pred             hhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccC----HHHHhCCCccccc
Confidence                           00000   01346788999999999999999999    7999999999853

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=2.5e-39  Score=339.45  Aligned_cols=260  Identities=29%  Similarity=0.444  Sum_probs=217.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .+.|++.+.||.|+||.||++.+..++..||+|++.....    ....+.+|+++++.++|+||+++++.|..+...|+|
T Consensus        18 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   93 (286)
T cd06614          18 RELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ----NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVV   93 (286)
T ss_pred             cccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch----hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEE
Confidence            4669999999999999999999998899999999976532    345678899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||++|++|.+++.... ..+++..+..++.||+.||.|||+.||+|+||||+||+++.+++++|+|||++......   
T Consensus        94 ~e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~---  169 (286)
T cd06614          94 MEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKE---  169 (286)
T ss_pred             EeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhccc---
Confidence            99999999999887652 37899999999999999999999999999999999999999999999999987432100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       170 -------------------------------------------------------------------------~~~~~~~  176 (286)
T cd06614         170 -------------------------------------------------------------------------KSKRNSV  176 (286)
T ss_pred             -------------------------------------------------------------------------hhhhccc
Confidence                                                                                     0000123


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-ccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-LRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .+++.|+|||++.+..++.++|+|||||++|+|++|+.||...........+.... ...+....++..+++||.+||..
T Consensus       177 ~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  256 (286)
T cd06614         177 VGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVK  256 (286)
T ss_pred             cCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCcchhhCCHHHHHHHHHHhcc
Confidence            57889999999999889999999999999999999999998765443333332222 22223334788999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      +|.+||+    +.+++.|+||+...|
T Consensus       257 ~p~~Rpt----~~~il~~~~~~~~~~  278 (286)
T cd06614         257 DPEKRPS----AEELLQHPFLKKACP  278 (286)
T ss_pred             ChhhCcC----HHHHhhChHhhccCc
Confidence            9999999    799999999998544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=3e-39  Score=345.69  Aligned_cols=255  Identities=28%  Similarity=0.395  Sum_probs=213.4

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ..|..++.||+|+||.||++++..++..||+|++.+......+....+.+|+++++.++|||++++++++.++...|+||
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  104 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVM  104 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEE
Confidence            34889999999999999999999999999999997654444455667889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+. |+|.+++... ...+++..+..++.||+.||.|||++||+||||||+||+++.++.+||+|||++....      
T Consensus       105 e~~~-g~l~~~~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~------  176 (317)
T cd06635         105 EYCL-GSASDLLEVH-KKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIAS------  176 (317)
T ss_pred             eCCC-CCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccC------
Confidence            9996 4776665433 3468999999999999999999999999999999999999999999999999873210      


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                                ......
T Consensus       177 --------------------------------------------------------------------------~~~~~~  182 (317)
T cd06635         177 --------------------------------------------------------------------------PANSFV  182 (317)
T ss_pred             --------------------------------------------------------------------------Cccccc
Confidence                                                                                      001236


Q ss_pred             cCcccCChhhhc---cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          571 GTHEYLAPEIIK---GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       571 GT~~Y~APEvl~---g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      |++.|+|||++.   ...++.++|||||||++|||++|+.||.+......+..+.............+..+++||.+||.
T Consensus       183 ~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  262 (317)
T cd06635         183 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQ  262 (317)
T ss_pred             CCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhccCCCCCCccccHHHHHHHHHHcc
Confidence            888999999984   34578899999999999999999999987655555555544433333344578889999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      .+|.+||+    +.++++|+|+..
T Consensus       263 ~~p~~Rpt----~~~il~~~~~~~  282 (317)
T cd06635         263 KIPQDRPT----SEELLKHMFVLR  282 (317)
T ss_pred             CCcccCcC----HHHHHhChhhhc
Confidence            99999999    799999999964

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=2.7e-39  Score=332.26  Aligned_cols=242  Identities=24%  Similarity=0.329  Sum_probs=195.7

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGG  416 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GG  416 (730)
                      +.||+|+||.||+|+++.+++.||+|.+.+..  ..+....+.+|+++|+.++||||+++++++.....+|+||||++++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   78 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETL--PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGG   78 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccC--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCC
Confidence            36999999999999999999999999886432  2344567889999999999999999999999999999999999999


Q ss_pred             CccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCC
Q 004790          417 DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLD  496 (730)
Q Consensus       417 sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~  496 (730)
                      +|.+++.+. +..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......          
T Consensus        79 ~L~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~----------  147 (252)
T cd05084          79 DFLTFLRTE-GPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDG----------  147 (252)
T ss_pred             cHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccc----------
Confidence            999887653 346889999999999999999999999999999999999999999999999997432100          


Q ss_pred             CCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccC
Q 004790          497 SDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYL  576 (730)
Q Consensus       497 ~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~  576 (730)
                                ..                                                     . .......++..|+
T Consensus       148 ----------~~-----------------------------------------------------~-~~~~~~~~~~~y~  163 (252)
T cd05084         148 ----------VY-----------------------------------------------------A-STGGMKQIPVKWT  163 (252)
T ss_pred             ----------cc-----------------------------------------------------c-ccCCCCCCceeec
Confidence                      00                                                     0 0000012346799


Q ss_pred             ChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          577 APEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       577 APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      |||.+.+..++.++|||||||++|||++ |..||...........+. .....+.....+..+.+||.+||..||++||+
T Consensus       164 aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  242 (252)
T cd05084         164 APEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIE-QGVRLPCPELCPDAVYRLMERCWEYDPGQRPS  242 (252)
T ss_pred             CchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHH-cCCCCCCcccCCHHHHHHHHHHcCCChhhCcC
Confidence            9999999999999999999999999997 999997654433322222 22233444567889999999999999999999


Q ss_pred             c
Q 004790          656 V  656 (730)
Q Consensus       656 ~  656 (730)
                      +
T Consensus       243 ~  243 (252)
T cd05084         243 F  243 (252)
T ss_pred             H
Confidence            5

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=7.4e-39  Score=327.83  Aligned_cols=254  Identities=28%  Similarity=0.435  Sum_probs=212.6

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +|++.+.||.|+||.||++++..+++.||+|.+.+..... .....+.+|+++++.++||||+++++++.++...|+|||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQ-KEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVME   79 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccH-HHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEeh
Confidence            5899999999999999999999999999999997755433 344567789999999999999999999999999999999


Q ss_pred             ecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          412 YCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       412 y~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |+++++|..++.+.  ....+++..+..++.||+.||.|||++|++||||||+||+++.++.+||+|||++......   
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~---  156 (256)
T cd08530          80 YAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKN---  156 (256)
T ss_pred             hcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhccC---
Confidence            99999999877652  1246889999999999999999999999999999999999999999999999998432100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                                 .....
T Consensus       157 ---------------------------------------------------------------------------~~~~~  161 (256)
T cd08530         157 ---------------------------------------------------------------------------MAKTQ  161 (256)
T ss_pred             ---------------------------------------------------------------------------Ccccc
Confidence                                                                                       00012


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      .|++.|++||.+.+..++.++|+||||+++|+|++|+.||...+.......+...... +.....+.+++++|.+||..+
T Consensus       162 ~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~  240 (256)
T cd08530         162 IGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYP-PIPPIYSQDLQNFIRSMLQVK  240 (256)
T ss_pred             cCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCC-CCchhhCHHHHHHHHHHcCCC
Confidence            5788999999999998999999999999999999999999876654333333322221 222357889999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF  669 (730)
                      |++||+    +.++++||+.
T Consensus       241 p~~Rp~----~~~~l~~p~~  256 (256)
T cd08530         241 PKLRPN----CDKILASPAV  256 (256)
T ss_pred             cccCCC----HHHHhcCCCC
Confidence            999999    7999999984

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=3.6e-39  Score=333.72  Aligned_cols=251  Identities=23%  Similarity=0.308  Sum_probs=204.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||++++... ..+|+|.+......    ...+.+|+.+++.++||||+++++++.....+|+|
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~~~-~~~aik~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   77 (256)
T cd05113           3 PKDLTFLKELGTGQFGVVKYGKWRGQ-YDVAIKMIKEGSMS----EDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIV   77 (256)
T ss_pred             hHHeEEeeEecCcccceEEEEEecCC-CcEEEEEcCCCccc----HHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEE
Confidence            46799999999999999999988654 35999998754332    24578899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+.+|+|.+++.... ..+++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......  
T Consensus        78 ~e~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~--  154 (256)
T cd05113          78 TEYMSNGCLLNYLREHG-KRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDE--  154 (256)
T ss_pred             EEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCCc--
Confidence            99999999999876543 368999999999999999999999999999999999999999999999999874321000  


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       155 -------------------------------------------------------------------------~~~~~~~  161 (256)
T cd05113         155 -------------------------------------------------------------------------YTSSVGS  161 (256)
T ss_pred             -------------------------------------------------------------------------eeecCCC
Confidence                                                                                     0000112


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .++..|+|||++.+..++.++|+|||||++|+|++ |..||...+.......+.... ..+.....+..++++|.+||..
T Consensus       162 ~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~  240 (256)
T cd05113         162 KFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGL-RLYRPHLASEKVYAIMYSCWHE  240 (256)
T ss_pred             ccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHcCC
Confidence            45678999999998889999999999999999998 999998765544444443332 2233345688999999999999


Q ss_pred             CCCCcCCchhcHHHHHcC
Q 004790          649 EPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~H  666 (730)
                      ||.+||+    +.+|+.+
T Consensus       241 ~p~~Rp~----~~~ll~~  254 (256)
T cd05113         241 KAEERPT----FQQLLSS  254 (256)
T ss_pred             CcccCCC----HHHHHHh
Confidence            9999999    5777653

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=5.8e-39  Score=328.14  Aligned_cols=249  Identities=26%  Similarity=0.358  Sum_probs=205.9

Q ss_pred             eEEccCCcEEEEEEEECCC---CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeec
Q 004790          337 KRLGCGDIGSVYLSELSST---RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYC  413 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t---~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~  413 (730)
                      +.||+|+||.||+|.+...   +..||+|++.......  ....+.+|+++++.++|+||+++++++.++..+|+||||+
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   78 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEE--ERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYM   78 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchh--HHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEec
Confidence            4699999999999999865   8899999997654322  4567889999999999999999999999999999999999


Q ss_pred             CCCCccccccccC-------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          414 PGGDLHTLRQRQP-------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       414 ~GGsL~~ll~~~~-------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      ++++|..++....       ...+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......
T Consensus        79 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~  158 (262)
T cd00192          79 EGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDD  158 (262)
T ss_pred             cCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEcccccccccccc
Confidence            9999999877642       357899999999999999999999999999999999999999999999999998542100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ..                                                                          ....
T Consensus       159 ~~--------------------------------------------------------------------------~~~~  164 (262)
T cd00192         159 DY--------------------------------------------------------------------------YRKK  164 (262)
T ss_pred             cc--------------------------------------------------------------------------cccc
Confidence            00                                                                          0011


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ....+++.|+|||.+.+..++.++|+|||||++|||++ |..||.+.........+.. ....+....++.++.++|.+|
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~  243 (262)
T cd00192         165 TGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRK-GYRLPKPEYCPDELYELMLSC  243 (262)
T ss_pred             cCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc-CCCCCCCccCChHHHHHHHHH
Confidence            12457889999999999899999999999999999998 6999988754443333332 333344456789999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcC
Q 004790          646 LVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~H  666 (730)
                      |..||.+||+    +.++++|
T Consensus       244 l~~~p~~Rps----~~~l~~~  260 (262)
T cd00192         244 WQLDPEDRPT----FSELVER  260 (262)
T ss_pred             ccCCcccCcC----HHHHHHh
Confidence            9999999999    6787764

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=5.2e-39  Score=332.04  Aligned_cols=247  Identities=22%  Similarity=0.362  Sum_probs=202.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|+++++||+|+||.||+|.... ++.||+|.+.+....    ...+.+|+.+++.++||||+++++++. ....|
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~-~~~~a~K~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~   76 (260)
T cd05067           3 VPRETLKLVKKLGAGQFGEVWMGYYNG-HTKVAIKSLKQGSMS----PEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIY   76 (260)
T ss_pred             cchHHceeeeeeccCccceEEeeecCC-CceEEEEEecCCCCc----HHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcE
Confidence            455789999999999999999998754 567999998765432    245778999999999999999999875 45689


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+.+++|.+++....+..+++.++..++.|++.||+|||++|++||||||+||+++.++.++|+|||++.......
T Consensus        77 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05067          77 IITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNE  156 (260)
T ss_pred             EEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCCCC
Confidence            99999999999998876656678999999999999999999999999999999999999999999999999984321000


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       157 ---------------------------------------------------------------------------~~~~~  161 (260)
T cd05067         157 ---------------------------------------------------------------------------YTARE  161 (260)
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00001


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...++..|+|||++.+..++.++|||||||++|||++ |+.||.+.+.......+ ......+.....+.++++||++||
T Consensus       162 ~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l  240 (260)
T cd05067         162 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNL-ERGYRMPRPDNCPEELYELMRLCW  240 (260)
T ss_pred             CCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHH-HcCCCCCCCCCCCHHHHHHHHHHc
Confidence            1245778999999999999999999999999999998 99999876554433332 233334444567889999999999


Q ss_pred             cCCCCCcCCc
Q 004790          647 VKEPQHRLGV  656 (730)
Q Consensus       647 ~~DP~~R~t~  656 (730)
                      ..+|++||++
T Consensus       241 ~~~p~~Rp~~  250 (260)
T cd05067         241 KEKPEERPTF  250 (260)
T ss_pred             cCChhhCCCH
Confidence            9999999994

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=4.7e-39  Score=331.64  Aligned_cols=242  Identities=23%  Similarity=0.334  Sum_probs=197.8

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc-ccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF-ETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f-~~~~~l  406 (730)
                      +.+.+|++.+.||+|+||.||++...  +..||+|.++...     ....+.+|+.+++.++|+||+++++++ ..+...
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~~--~~~~~~k~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   75 (256)
T cd05082           3 LNMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGL   75 (256)
T ss_pred             ccHHhCeeeeeecccCCCeEEEEEEc--CCcEEEEEeCCCc-----hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCce
Confidence            45678999999999999999999875  5579999986542     234578899999999999999999865 566789


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+++++|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++..... 
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~-  154 (256)
T cd05082          76 YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS-  154 (256)
T ss_pred             EEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceeccc-
Confidence            9999999999999988765555688999999999999999999999999999999999999999999999998743100 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                    ..
T Consensus       155 ------------------------------------------------------------------------------~~  156 (256)
T cd05082         155 ------------------------------------------------------------------------------TQ  156 (256)
T ss_pred             ------------------------------------------------------------------------------cC
Confidence                                                                                          00


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ....++..|+|||++.+..++.++|||||||++|||++ |+.||...........+ ...........++..+++||.+|
T Consensus       157 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~  235 (256)
T cd05082         157 DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRV-EKGYKMDAPDGCPPVVYDVMKQC  235 (256)
T ss_pred             CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH-hcCCCCCCCCCCCHHHHHHHHHH
Confidence            01234567999999999999999999999999999997 99999865433332222 22222233356788999999999


Q ss_pred             hcCCCCCcCCc
Q 004790          646 LVKEPQHRLGV  656 (730)
Q Consensus       646 L~~DP~~R~t~  656 (730)
                      |..||++||++
T Consensus       236 l~~~p~~Rpt~  246 (256)
T cd05082         236 WHLDAATRPSF  246 (256)
T ss_pred             hcCChhhCcCH
Confidence            99999999995

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=3.8e-39  Score=333.09  Aligned_cols=247  Identities=24%  Similarity=0.361  Sum_probs=201.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|+++++||+|+||.||+|.+.. +..+|+|.+......    ...+.+|+.+++.++||||+++++++.. ...|
T Consensus         3 ~~~~~~~~~~~ig~g~~~~v~~~~~~~-~~~~~~k~~~~~~~~----~~~~~~E~~~l~~l~~~~i~~~~~~~~~-~~~~   76 (260)
T cd05070           3 IPRESLQLIKKLGNGQFGEVWMGTWNG-NTKVAVKTLKPGTMS----PESFLEEAQIMKKLRHDKLVQLYAVVSE-EPIY   76 (260)
T ss_pred             CchHHhhhhheeccccCceEEEEEecC-CceeEEEEecCCCCC----HHHHHHHHHHHHhcCCCceEEEEeEECC-CCcE
Confidence            445789999999999999999998764 456999998764432    2347889999999999999999998864 5689


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+++++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.++|+|||++.......
T Consensus        77 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05070          77 IVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNE  156 (260)
T ss_pred             EEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccCcc
Confidence            99999999999998876555668999999999999999999999999999999999999999999999999984321000


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       157 ---------------------------------------------------------------------------~~~~~  161 (260)
T cd05070         157 ---------------------------------------------------------------------------YTARQ  161 (260)
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00001


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...++..|+|||++.+..++.++|+|||||++|+|++ |..||.+.+..+.+..+.. ....+.....+..+++||.+||
T Consensus       162 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l  240 (260)
T cd05070         162 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVER-GYRMPCPQDCPISLHELMLQCW  240 (260)
T ss_pred             CCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc-CCCCCCCCcCCHHHHHHHHHHc
Confidence            1245678999999998889999999999999999999 9999987665544443332 3344444567889999999999


Q ss_pred             cCCCCCcCCc
Q 004790          647 VKEPQHRLGV  656 (730)
Q Consensus       647 ~~DP~~R~t~  656 (730)
                      ..||++||++
T Consensus       241 ~~~p~~Rpt~  250 (260)
T cd05070         241 KKDPEERPTF  250 (260)
T ss_pred             ccCcccCcCH
Confidence            9999999994

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.3e-39  Score=334.43  Aligned_cols=249  Identities=23%  Similarity=0.342  Sum_probs=202.4

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      .+|++.+.||+|+||.||+++++. +..+|+|++.+....    ...+.+|+++++.++||||+++++++......|+||
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~~-~~~~~iK~~~~~~~~----~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   78 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWRG-KIDVAIKMIREGAMS----EDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVT   78 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEecC-CccEEEEEeccCCCC----HHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEE
Confidence            568999999999999999999864 557999998754332    234677999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++|++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++......   
T Consensus        79 e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~---  154 (256)
T cd05059          79 EYMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQ---  154 (256)
T ss_pred             ecCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceeccccc---
Confidence            9999999999876543 368999999999999999999999999999999999999999999999999884321000   


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              ........
T Consensus       155 ------------------------------------------------------------------------~~~~~~~~  162 (256)
T cd05059         155 ------------------------------------------------------------------------YTSSQGTK  162 (256)
T ss_pred             ------------------------------------------------------------------------ccccCCCC
Confidence                                                                                    00000112


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      ++..|+|||++.+..++.++|+|||||++|||++ |+.||.+....+....+. .....+.....+.++.+||.+||..+
T Consensus       163 ~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~cl~~~  241 (256)
T cd05059         163 FPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVS-AGYRLYRPKLAPTEVYTIMYSCWHEK  241 (256)
T ss_pred             CCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH-cCCcCCCCCCCCHHHHHHHHHHhcCC
Confidence            4567999999999999999999999999999998 899998765544443332 23333444567899999999999999


Q ss_pred             CCCcCCchhcHHHHHc
Q 004790          650 PQHRLGVKRGATEIKQ  665 (730)
Q Consensus       650 P~~R~t~~~~a~elL~  665 (730)
                      |++||+    +.++++
T Consensus       242 p~~Rpt----~~~~l~  253 (256)
T cd05059         242 PEDRPA----FKKLLS  253 (256)
T ss_pred             hhhCcC----HHHHHH
Confidence            999999    466654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=5e-39  Score=332.08  Aligned_cols=244  Identities=23%  Similarity=0.300  Sum_probs=195.8

Q ss_pred             EEccCCcEEEEEEEE--CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCC
Q 004790          338 RLGCGDIGSVYLSEL--SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       338 ~LG~G~fG~Vyla~~--~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      +||+|+||.||+|.+  ..+++.+|+|+++... ......+.+.+|+.+++.++||||++++++++. ...|+||||+++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~e~~~~   79 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDN-NDPALKDELLREANVMQQLDNPYIVRMIGICEA-ESWMLVMELAEL   79 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCC-CcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCcEEEEecCCC
Confidence            589999999999965  5667899999986543 233455678899999999999999999998764 467899999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      ++|..++...  ..+++..+..++.||+.||+|||++||+||||||.|||++.++.+||+|||++.........      
T Consensus        80 ~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~------  151 (257)
T cd05116          80 GPLNKFLQKN--KHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENY------  151 (257)
T ss_pred             CcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCe------
Confidence            9999988654  46899999999999999999999999999999999999999999999999998532110000      


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                         ........+++.|
T Consensus       152 -------------------------------------------------------------------~~~~~~~~~~~~y  164 (257)
T cd05116         152 -------------------------------------------------------------------YKAKTHGKWPVKW  164 (257)
T ss_pred             -------------------------------------------------------------------eeecCCCCCCccc
Confidence                                                                               0000112456889


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRL  654 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~  654 (730)
                      +|||.+....++.++|+|||||++|||++ |..||.+.+.......+. .....+.....+.++++||++||..||++||
T Consensus       165 ~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~li~~~~~~~p~~Rp  243 (257)
T cd05116         165 YAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIE-SGERMECPQRCPPEMYDLMKLCWTYGVDERP  243 (257)
T ss_pred             cCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHhccCchhCc
Confidence            99999988889999999999999999997 999998765544433333 2223334456889999999999999999999


Q ss_pred             Cchhc
Q 004790          655 GVKRG  659 (730)
Q Consensus       655 t~~~~  659 (730)
                      ++...
T Consensus       244 ~~~~i  248 (257)
T cd05116         244 GFAVV  248 (257)
T ss_pred             CHHHH
Confidence            96433

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.6e-39  Score=330.58  Aligned_cols=252  Identities=24%  Similarity=0.351  Sum_probs=208.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|++.+.||.|+||.||+|.+.. ++.||||.+......    ...+.+|+.+++.++||||+++++++.++..+|
T Consensus         3 ~~~~~~~i~~~ig~g~~~~v~~~~~~~-~~~~~vK~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   77 (261)
T cd05034           3 IPRESLKLERKLGAGQFGEVWMGTWNG-TTKVAVKTLKPGTMS----PEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIY   77 (261)
T ss_pred             cchhheeeeeeeccCcceEEEEEEEcC-CceEEEEEecCCccC----HHHHHHHHHHHhhCCCCCEeeeeeeeecCCceE
Confidence            567899999999999999999999865 467999998764432    245778999999999999999999999989999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+++++|.+++....+..+++..++.++.||+.||.|||++||+|+||||+||+++.++.+||+|||++..+....
T Consensus        78 ~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~  157 (261)
T cd05034          78 IVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDE  157 (261)
T ss_pred             EEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceeccchh
Confidence            99999999999998877655678999999999999999999999999999999999999999999999999985421000


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       158 ---------------------------------------------------------------------------~~~~~  162 (261)
T cd05034         158 ---------------------------------------------------------------------------YTARE  162 (261)
T ss_pred             ---------------------------------------------------------------------------hhhhh
Confidence                                                                                       00000


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...++..|+|||.+.+..++.++|+|||||++|+|++ |+.||.+......+.++. ..+..+.....+.+++++|.+||
T Consensus       163 ~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l  241 (261)
T cd05034         163 GAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVE-RGYRMPRPPNCPEELYDLMLQCW  241 (261)
T ss_pred             ccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHHHc
Confidence            1134668999999999999999999999999999998 999998766554444443 23344444566889999999999


Q ss_pred             cCCCCCcCCchhcHHHHH
Q 004790          647 VKEPQHRLGVKRGATEIK  664 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL  664 (730)
                      ..+|++||+    +++++
T Consensus       242 ~~~p~~Rp~----~~~l~  255 (261)
T cd05034         242 DKDPEERPT----FEYLQ  255 (261)
T ss_pred             ccCcccCCC----HHHHH
Confidence            999999999    45554

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-41  Score=393.80  Aligned_cols=259  Identities=31%  Similarity=0.539  Sum_probs=219.6

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +++-...||.|.||.||-|....+|...|||-++..... .+....+.+|..+|..|+|||+|++|++-.+...+||.||
T Consensus      1236 rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~-~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFME 1314 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSD-HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFME 1314 (1509)
T ss_pred             eeccccccCCcceeeeEEeecCCccchhhhhhhhcCccc-cccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHH
Confidence            566677899999999999999999999999988655433 4556678899999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      ||.||+|.++++..  +..+|...+.|..|++.||.|||++|||||||||+|||++.+|.||+.|||.|+......    
T Consensus      1315 yC~~GsLa~ll~~g--ri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~---- 1388 (1509)
T KOG4645|consen 1315 YCEGGSLASLLEHG--RIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNA---- 1388 (1509)
T ss_pred             HhccCcHHHHHHhc--chhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCch----
Confidence            99999999998864  678899999999999999999999999999999999999999999999999996542110    


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                         |                                         +++        ..-...+|
T Consensus      1389 -------------------~-----------------------------------------~~~--------~el~~~~G 1400 (1509)
T KOG4645|consen 1389 -------------------Q-----------------------------------------TMP--------GELQSMMG 1400 (1509)
T ss_pred             -------------------h-----------------------------------------cCC--------HHHHhhcC
Confidence                               0                                         000        01125689


Q ss_pred             CcccCChhhhcc---CCCCCcceeechhHHHHHHhhCCCCCCCCCC-ccceeeee-cccccCCCCCCCChhHHHHHHhhh
Q 004790          572 THEYLAPEIIKG---EGHGSAVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNVV-GQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       572 T~~Y~APEvl~g---~~~~~~sDIWSLG~iLyELltG~~PF~g~~~-~~~l~~i~-~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      |+.|||||+|.+   .+++-+.|||||||++.||+||+.||...++ .+.++.+. +....+|..  ++.+.+|||.+||
T Consensus      1401 T~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~P~~--ls~~g~dFle~Cl 1478 (1509)
T KOG4645|consen 1401 TPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGHKPQIPER--LSSEGRDFLEHCL 1478 (1509)
T ss_pred             CchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccCCCCCchh--hhHhHHHHHHHHH
Confidence            999999999976   4689999999999999999999999987654 34444443 345556654  8999999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ..||.+|++    +.||+.|.|=+.
T Consensus      1479 ~~dP~~Rw~----~~qlle~~f~~~ 1499 (1509)
T KOG4645|consen 1479 EQDPKMRWT----ASQLLEHAFGKS 1499 (1509)
T ss_pred             hcCchhhhH----HHHHHHhhcccc
Confidence            999999999    789999998764

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=6.1e-39  Score=332.84  Aligned_cols=253  Identities=20%  Similarity=0.297  Sum_probs=198.4

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCe--EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc------cc
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRC--YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET------DR  404 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~--~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~------~~  404 (730)
                      |.+.+.||+|+||.||+|++..++.  .+|+|.++... ........+.+|+++|+.++||||+++++++..      ..
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   79 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAI-CTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYP   79 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCc-CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCC
Confidence            3567899999999999999877765  68999986543 234556778899999999999999999986532      23


Q ss_pred             eeeEEeeecCCCCcccccccc----CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQ----PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~----~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      ..++||||+.+|+|..++...    ....+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  159 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLS  159 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCcc
Confidence            578999999999998765321    2245889999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +.......                                                                        
T Consensus       160 ~~~~~~~~------------------------------------------------------------------------  167 (272)
T cd05075         160 KKIYNGDY------------------------------------------------------------------------  167 (272)
T ss_pred             cccCcccc------------------------------------------------------------------------
Confidence            54210000                                                                        


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHH
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASR  639 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~  639 (730)
                        ........+++.|+|||++.+..++.++|||||||++|||++ |+.||.+......+..+..+. ..+.....+..++
T Consensus       168 --~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  244 (272)
T cd05075         168 --YRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGN-RLKQPPDCLDGLY  244 (272)
T ss_pred             --eecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC-CCCCCCCCCHHHH
Confidence              000011245778999999999999999999999999999999 899998765544333333322 2334456788999


Q ss_pred             HHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          640 DLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      +||.+||..||++||++    .+|++
T Consensus       245 ~li~~~l~~~p~~Rps~----~~l~~  266 (272)
T cd05075         245 SLMSSCWLLNPKDRPSF----ETLRC  266 (272)
T ss_pred             HHHHHHcCCCcccCcCH----HHHHH
Confidence            99999999999999995    55553

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=7.3e-39  Score=332.69  Aligned_cols=251  Identities=24%  Similarity=0.319  Sum_probs=203.7

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCC---eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTR---CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~---~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      ..+|++.+.||+|+||.||+|+++.++   ..+|+|.++....  ......+.+|+.+|+.++||||+++++++.+++..
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (267)
T cd05066           3 ASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYT--EKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPV   80 (267)
T ss_pred             HHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCC--HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCcc
Confidence            367999999999999999999986443   3799999865432  23456788899999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||++|++|..++.... ..+++.++..++.||+.||.|||++||+||||||+|||++.+++++|+|||++..+...
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~  159 (267)
T cd05066          81 MIVTEYMENGSLDAFLRKHD-GQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD  159 (267)
T ss_pred             EEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcccccccc
Confidence            99999999999999887543 46889999999999999999999999999999999999999999999999998432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ...                                                                         ....
T Consensus       160 ~~~-------------------------------------------------------------------------~~~~  166 (267)
T cd05066         160 PEA-------------------------------------------------------------------------AYTT  166 (267)
T ss_pred             cce-------------------------------------------------------------------------eeec
Confidence            000                                                                         0000


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ....++..|+|||.+.+..++.++|+|||||++|||++ |..||......+.+..+. +....+.....+..+++||.+|
T Consensus       167 ~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~  245 (267)
T cd05066         167 RGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIE-EGYRLPAPMDCPAALHQLMLDC  245 (267)
T ss_pred             CCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHHHh-CCCcCCCCCCCCHHHHHHHHHH
Confidence            11234678999999999899999999999999999886 999998765444333333 3344555566788999999999


Q ss_pred             hcCCCCCcCCch
Q 004790          646 LVKEPQHRLGVK  657 (730)
Q Consensus       646 L~~DP~~R~t~~  657 (730)
                      |.++|++||++.
T Consensus       246 l~~~p~~Rp~~~  257 (267)
T cd05066         246 WQKDRNERPKFE  257 (267)
T ss_pred             cccCchhCCCHH
Confidence            999999999953

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=5e-39  Score=338.97  Aligned_cols=260  Identities=27%  Similarity=0.340  Sum_probs=203.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc---
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR---  404 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~---  404 (730)
                      ...++|++.+.||+|+||.||+|.++.+++.||+|+++..... ......+.+|+++++.++||||+++++++.+..   
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~   82 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEK-EGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDAL   82 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccc-cCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhh
Confidence            4567899999999999999999999999999999999754321 122345678999999999999999999887654   


Q ss_pred             -------eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecc
Q 004790          405 -------FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF  477 (730)
Q Consensus       405 -------~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DF  477 (730)
                             .+|+||||+++ +|..++... ...+++..++.++.||+.||.|||+.||+||||||+||+++.++.+||+||
T Consensus        83 ~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~df  160 (302)
T cd07864          83 DFKKDKGAFYLVFEYMDH-DLMGLLESG-LVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADF  160 (302)
T ss_pred             hccccCCcEEEEEcccCc-cHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCcc
Confidence                   89999999965 666655543 346899999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccc
Q 004790          478 DLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPEL  557 (730)
Q Consensus       478 GlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (730)
                      |++........                                                                     
T Consensus       161 g~~~~~~~~~~---------------------------------------------------------------------  171 (302)
T cd07864         161 GLARLYNSEES---------------------------------------------------------------------  171 (302)
T ss_pred             cccccccCCcc---------------------------------------------------------------------
Confidence            99843210000                                                                     


Q ss_pred             ccccccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec---ccc--c----
Q 004790          558 VAEPTAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG---QQL--R----  627 (730)
Q Consensus       558 ~~e~~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~---~~~--~----  627 (730)
                            .......++..|+|||++.+. .++.++|||||||++|||++|++||...+....+..+..   ...  .    
T Consensus       172 ------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (302)
T cd07864         172 ------RPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDV  245 (302)
T ss_pred             ------cccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhcccc
Confidence                  000112467889999998764 478999999999999999999999986543322211110   000  0    


Q ss_pred             -------------------CCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          628 -------------------FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       628 -------------------~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                                         ......++..+.+||.+||..||.+||+    +.+++.||||
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~----~~~il~~~~~  302 (302)
T cd07864         246 IKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCT----AEEALNSPWL  302 (302)
T ss_pred             cccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCC----HHHHhcCCCC
Confidence                               0012246789999999999999999999    7999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=6.5e-39  Score=333.62  Aligned_cols=255  Identities=21%  Similarity=0.332  Sum_probs=210.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      .++|++++.||.|+||.||+|+.+.     +.+.||+|.+....  .......+.+|+++|+.++||||+++++++.+..
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   81 (275)
T cd05046           4 RSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTK--DENLQSEFRRELDMFRKLSHKNVVRLLGLCREAE   81 (275)
T ss_pred             hHhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCcc--chHHHHHHHHHHHHHHhcCCcceeeeEEEECCCC
Confidence            4689999999999999999999754     35679999886542  2234567889999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCC-------CccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGK-------HFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF  477 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~-------~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DF  477 (730)
                      ..|+||||+++|+|.+++......       .+++..+..++.||+.||.|||++||+||||||+|||++.+++++|+||
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~  161 (275)
T cd05046          82 PHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLL  161 (275)
T ss_pred             cceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEccc
Confidence            999999999999999988765321       5899999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccc
Q 004790          478 DLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPEL  557 (730)
Q Consensus       478 GlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (730)
                      |++......                                                                       
T Consensus       162 ~~~~~~~~~-----------------------------------------------------------------------  170 (275)
T cd05046         162 SLSKDVYNS-----------------------------------------------------------------------  170 (275)
T ss_pred             ccccccCcc-----------------------------------------------------------------------
Confidence            987421000                                                                       


Q ss_pred             ccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCCh
Q 004790          558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSY  636 (730)
Q Consensus       558 ~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~  636 (730)
                          .........++..|+|||.+.+..++.++|||||||++|+|++ |..||.+......+..+..+...++....++.
T Consensus       171 ----~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (275)
T cd05046         171 ----EYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELPVPEGCPS  246 (275)
T ss_pred             ----cccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHHHcCCcCCCCCCCCCH
Confidence                0000112356778999999998889999999999999999998 89999876555555555445555555566789


Q ss_pred             hHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          637 ASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       637 ~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .+.++|.+||..||.+||+    +.++++
T Consensus       247 ~l~~~i~~~l~~~p~~Rp~----~~~~l~  271 (275)
T cd05046         247 RLYKLMTRCWAVNPKDRPS----FSELVS  271 (275)
T ss_pred             HHHHHHHHHcCCCcccCCC----HHHHHH
Confidence            9999999999999999999    577765

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-40  Score=364.71  Aligned_cols=245  Identities=33%  Similarity=0.470  Sum_probs=206.1

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceee
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~  407 (730)
                      ....|.+...||.|+|+.|-.+.+..+++.+++|++.+..       ...++|+.++.+. +||||+++++.+.++.+.|
T Consensus       320 ~~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~-------~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~  392 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA-------DDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIY  392 (612)
T ss_pred             cchhhccccccCCCCccceeeeeccccccchhheeccccc-------cccccccchhhhhcCCCcceeecceecCCceee
Confidence            3578999999999999999999999999999999998762       2245688776655 8999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe-cCCCceEEecccccccccCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV-RDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl-~~~g~vKL~DFGlA~~~~~~  486 (730)
                      +|||++.|+.|.+-+...  +.+. ..+..|++||+.||.|||++|||||||||+|||+ +..|+++|+|||.++.... 
T Consensus       393 ~v~e~l~g~ell~ri~~~--~~~~-~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~-  468 (612)
T KOG0603|consen  393 LVMELLDGGELLRRIRSK--PEFC-SEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELER-  468 (612)
T ss_pred             eeehhccccHHHHHHHhc--chhH-HHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCch-
Confidence            999999999887755544  2343 7888899999999999999999999999999999 6899999999999843210 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                    .-
T Consensus       469 ------------------------------------------------------------------------------~~  470 (612)
T KOG0603|consen  469 ------------------------------------------------------------------------------SC  470 (612)
T ss_pred             ------------------------------------------------------------------------------hh
Confidence                                                                                          01


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      .+.+-|..|.|||++...+|+.++||||||++||+||+|+.||........+   .......+.+..+|.+++|||++||
T Consensus       471 ~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~ei---~~~i~~~~~s~~vS~~AKdLl~~LL  547 (612)
T KOG0603|consen  471 DTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAGIEI---HTRIQMPKFSECVSDEAKDLLQQLL  547 (612)
T ss_pred             cccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCchHHH---HHhhcCCccccccCHHHHHHHHHhc
Confidence            1236688999999999999999999999999999999999999876655222   2222222333678999999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      +.||.+|++    +.+++.||||
T Consensus       548 ~~dP~~Rl~----~~~i~~h~w~  566 (612)
T KOG0603|consen  548 QVDPALRLG----ADEIGAHPWF  566 (612)
T ss_pred             cCChhhCcC----hhhhccCcch
Confidence            999999999    7999999999

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2e-39  Score=327.08  Aligned_cols=265  Identities=25%  Similarity=0.348  Sum_probs=216.4

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc---
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD---  403 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~---  403 (730)
                      .+..++|++.+.||+|||+.||+++...++..||+|.+.-..   .+..+.+++|++..++++|||+++++++...+   
T Consensus        17 ~In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~---~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D   93 (302)
T KOG2345|consen   17 IINNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHS---QEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKD   93 (302)
T ss_pred             EEcCceEEEeeeecCCCceeeeeecccCcccchhhheeeccc---hHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhcc
Confidence            356789999999999999999999999999999999986543   46677899999999999999999999988543   


Q ss_pred             --ceeeEEeeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcc--eeecccCCccEEecCCCceEEecc
Q 004790          404 --RFSCLVMEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLG--VVYRDLKPENVLVRDDGHIMLSDF  477 (730)
Q Consensus       404 --~~l~LVmEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~g--IVHRDLKPeNILl~~~g~vKL~DF  477 (730)
                        ...||++.|...|+|.+.+++.  .+..++|.+...|+.+|+.||++||+..  +.||||||.|||+..++.++|.||
T Consensus        94 ~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~  173 (302)
T KOG2345|consen   94 GKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDL  173 (302)
T ss_pred             CceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEec
Confidence              3599999999999999877654  3457999999999999999999999999  999999999999999999999999


Q ss_pred             cccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccc
Q 004790          478 DLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPEL  557 (730)
Q Consensus       478 GlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (730)
                      |.+....   -.+..           .....                                            .+-+.
T Consensus       174 GS~~~a~---i~i~~-----------~~~a~--------------------------------------------~lQe~  195 (302)
T KOG2345|consen  174 GSATQAP---IQIEG-----------SRQAL--------------------------------------------RLQEW  195 (302)
T ss_pred             cCccccc---eEeec-----------hHHHH--------------------------------------------HHHHH
Confidence            9874310   00000           00000                                            00000


Q ss_pred             ccccccccccccccCcccCChhhhccCC---CCCcceeechhHHHHHHhhCCCCCCCCCC--ccceeeeecccccCCCCC
Q 004790          558 VAEPTAARSMSFVGTHEYLAPEIIKGEG---HGSAVDWWTFGIFLHELLYGKTPFKGSGN--RATLFNVVGQQLRFPDSP  632 (730)
Q Consensus       558 ~~e~~~~~~~s~vGT~~Y~APEvl~g~~---~~~~sDIWSLG~iLyELltG~~PF~g~~~--~~~l~~i~~~~~~~p~~~  632 (730)
                               .+-..|..|+|||.+.-+.   .+.++|||||||+||+|++|..||...-.  ......+.+.++.+|...
T Consensus       196 ---------a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~  266 (302)
T KOG2345|consen  196 ---------AEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNAQISIPNSS  266 (302)
T ss_pred             ---------HHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeeccccccCCCC
Confidence                     1124688999999997554   48899999999999999999999975322  234456778899999998


Q ss_pred             CCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          633 ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       633 ~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .+|+.+..||..||+.||.+||++    .+++.
T Consensus       267 ~yse~l~~lik~mlqvdP~qRP~i----~~ll~  295 (302)
T KOG2345|consen  267 RYSEALHQLIKSMLQVDPNQRPTI----PELLS  295 (302)
T ss_pred             CccHHHHHHHHHHhcCCcccCCCH----HHHHH
Confidence            999999999999999999999994    66654

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=1.1e-38  Score=333.39  Aligned_cols=254  Identities=21%  Similarity=0.306  Sum_probs=203.0

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCe----EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRC----YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~----~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      +...+|++++.||+|+||+||+|++..++.    .||+|++.....  ......+.+|+.+++.++||||+++++++...
T Consensus         4 l~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~   81 (279)
T cd05109           4 LKETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTS--PKANKEILDEAYVMAGVGSPYVCRLLGICLTS   81 (279)
T ss_pred             cchhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCC--HHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC
Confidence            456789999999999999999999877765    489999865432  23345688899999999999999999988754


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                       ..+++|||+++|+|.+++... ...+++..+..++.||+.||.|||++||+||||||+|||++.++++||+|||+++.+
T Consensus        82 -~~~l~~~~~~~g~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~  159 (279)
T cd05109          82 -TVQLVTQLMPYGCLLDYVREN-KDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLL  159 (279)
T ss_pred             -CcEEEEEcCCCCCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeec
Confidence             578999999999999887653 246899999999999999999999999999999999999999999999999998543


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      .....                                                                          .
T Consensus       160 ~~~~~--------------------------------------------------------------------------~  165 (279)
T cd05109         160 DIDET--------------------------------------------------------------------------E  165 (279)
T ss_pred             ccccc--------------------------------------------------------------------------e
Confidence            11000                                                                          0


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      .......+++.|+|||.+.+..++.++|||||||++|||++ |..||....... +...+......+.....+.++.++|
T Consensus       166 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li  244 (279)
T cd05109         166 YHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPARE-IPDLLEKGERLPQPPICTIDVYMIM  244 (279)
T ss_pred             eecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH-HHHHHHCCCcCCCCccCCHHHHHHH
Confidence            00001135678999999999999999999999999999998 999997654332 2223333333444456788999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHH
Q 004790          643 RGLLVKEPQHRLGVKRGATEIK  664 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL  664 (730)
                      .+||..||++||++    .+++
T Consensus       245 ~~~l~~dp~~Rp~~----~~l~  262 (279)
T cd05109         245 VKCWMIDSECRPRF----RELV  262 (279)
T ss_pred             HHHcCCChhhCcCH----HHHH
Confidence            99999999999995    5655

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=8.3e-39  Score=338.49  Aligned_cols=247  Identities=22%  Similarity=0.311  Sum_probs=199.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCe--EEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceee
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRC--YFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~--~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~  407 (730)
                      ++|++.+.||+|+||.||+|.++.++.  .+++|.++..  ........+.+|+++++++ +||||+++++++.....+|
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~   79 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEF--ASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLY   79 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEcccc--CCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcce
Confidence            579999999999999999999877764  4688887532  2223445678899999998 7999999999999999999


Q ss_pred             EEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceE
Q 004790          408 LVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIM  473 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vK  473 (730)
                      +||||+++++|.+++....              ...+++..++.++.||+.||+|||++||+||||||+|||++.++.+|
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~k  159 (297)
T cd05089          80 IAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASK  159 (297)
T ss_pred             EEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEE
Confidence            9999999999998876532              13588899999999999999999999999999999999999999999


Q ss_pred             EecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCC
Q 004790          474 LSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSST  553 (730)
Q Consensus       474 L~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (730)
                      |+|||++......                                                                   
T Consensus       160 l~dfg~~~~~~~~-------------------------------------------------------------------  172 (297)
T cd05089         160 IADFGLSRGEEVY-------------------------------------------------------------------  172 (297)
T ss_pred             ECCcCCCccccce-------------------------------------------------------------------
Confidence            9999987321000                                                                   


Q ss_pred             CcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCC
Q 004790          554 LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSP  632 (730)
Q Consensus       554 ~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~  632 (730)
                                .......++..|+|||++.+..++.++|||||||++|||++ |..||.+......+..+. .....+...
T Consensus       173 ----------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~~~~~-~~~~~~~~~  241 (297)
T cd05089         173 ----------VKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLP-QGYRMEKPR  241 (297)
T ss_pred             ----------eccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHh-cCCCCCCCC
Confidence                      00001123457999999999999999999999999999997 999998765544443332 223333344


Q ss_pred             CCChhHHHHHHhhhcCCCCCcCCch
Q 004790          633 ATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       633 ~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      .++.++++||.+||..||.+||++.
T Consensus       242 ~~~~~~~~li~~~l~~~p~~Rp~~~  266 (297)
T cd05089         242 NCDDEVYELMRQCWRDRPYERPPFA  266 (297)
T ss_pred             CCCHHHHHHHHHHcCCChhhCcCHH
Confidence            6788999999999999999999953

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=1e-38  Score=343.73  Aligned_cols=260  Identities=28%  Similarity=0.399  Sum_probs=202.7

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCC--CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccc----ccc
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSST--RCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFE----TDR  404 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t--~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~----~~~  404 (730)
                      +|++.+.||+|+||.||++++..+  ++.||||++.... ........+.+|+++++.+ +||||+++++.+.    ...
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~   79 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVF-SKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFN   79 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEecccc-ccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCC
Confidence            489999999999999999999888  8899999986432 2223345677899999998 6999999998653    235


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|++|||+ +++|..++...  ..+++..++.++.||+.||+|||++||+||||||+|||++.++++||+|||++..+.
T Consensus        80 ~~~~~~e~~-~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~  156 (332)
T cd07857          80 ELYLYEELM-EADLHQIIRSG--QPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFS  156 (332)
T ss_pred             cEEEEEecc-cCCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCceecc
Confidence            678999999 57888877544  578999999999999999999999999999999999999999999999999985431


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      .....                                                                        ...
T Consensus       157 ~~~~~------------------------------------------------------------------------~~~  164 (332)
T cd07857         157 ENPGE------------------------------------------------------------------------NAG  164 (332)
T ss_pred             ccccc------------------------------------------------------------------------ccc
Confidence            10000                                                                        000


Q ss_pred             cccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeee---------------c-----
Q 004790          565 RSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV---------------G-----  623 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~---------------~-----  623 (730)
                      ....++||+.|+|||++.+ ..++.++|||||||++|+|++|++||.+.+....+..++               .     
T Consensus       165 ~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (332)
T cd07857         165 FMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQN  244 (332)
T ss_pred             cccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHH
Confidence            1123579999999999876 468999999999999999999999998654221111100               0     


Q ss_pred             --------ccccCC-CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          624 --------QQLRFP-DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       624 --------~~~~~p-~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                              ....++ ..+..+..+++||.+||..||.+||+    +.+++.||||+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t----~~~ll~~~~~~~  297 (332)
T cd07857         245 YIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRIS----VEEALEHPYLAI  297 (332)
T ss_pred             HHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCC----HHHHhcChhhhh
Confidence                    000111 12345788999999999999999999    799999999975

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=7.9e-39  Score=341.03  Aligned_cols=256  Identities=28%  Similarity=0.374  Sum_probs=210.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ..|..++.||+|+||.||+|+++.++..+|+|.+............++.+|+++++.++|+|++++++++..+...|+||
T Consensus        15 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   94 (308)
T cd06634          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (308)
T ss_pred             HHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEE
Confidence            34888899999999999999999999999999987544444455567888999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+. |+|..++... ...+++..++.++.||+.||.|||++|++||||||+|||++.++.+||+|||++....      
T Consensus        95 e~~~-~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~------  166 (308)
T cd06634          95 EYCL-GSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA------  166 (308)
T ss_pred             EccC-CCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeec------
Confidence            9996 5776655433 2468999999999999999999999999999999999999999999999999873210      


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                                ......
T Consensus       167 --------------------------------------------------------------------------~~~~~~  172 (308)
T cd06634         167 --------------------------------------------------------------------------PANXFV  172 (308)
T ss_pred             --------------------------------------------------------------------------Cccccc
Confidence                                                                                      001236


Q ss_pred             cCcccCChhhhcc---CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          571 GTHEYLAPEIIKG---EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       571 GT~~Y~APEvl~g---~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      ||+.|+|||++.+   ..++.++|||||||++|+|++|..||........+..+.............+..+++||.+||.
T Consensus       173 ~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  252 (308)
T cd06634         173 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQ  252 (308)
T ss_pred             CCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHHHHHHHhhcCCCCcCcccccHHHHHHHHHHhh
Confidence            8889999999853   4578899999999999999999999977554443333333322222234578889999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      .+|++||+    +.++++||||...
T Consensus       253 ~~P~~Rp~----~~~ll~~~~~~~~  273 (308)
T cd06634         253 KIPQDRPT----SEVLLKHRFVLRE  273 (308)
T ss_pred             CCcccCCC----HHHHhhCcccccc
Confidence            99999999    6999999999863

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=8.1e-39  Score=335.40  Aligned_cols=250  Identities=23%  Similarity=0.325  Sum_probs=202.2

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEEC-----CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELS-----STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~-----~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      ...+|++.++||+|+||.||+++..     .++..+|+|.+....   ......+.+|+++++.++|+||+++++++.+.
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   79 (280)
T cd05092           3 KRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS---ESARQDFQREAELLTVLQHQHIVRFYGVCTEG   79 (280)
T ss_pred             ChHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCC---HHHHHHHHHHHHHHhcCCCCCCceEEEEEecC
Confidence            3467899999999999999999753     356689999886543   23445788999999999999999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccCC-------------CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPG-------------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG  470 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~-------------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g  470 (730)
                      ...|+||||+++++|.+++.....             ..+++..++.++.||+.||+|||++||+||||||+|||++.++
T Consensus        80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~  159 (280)
T cd05092          80 RPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGL  159 (280)
T ss_pred             CceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCC
Confidence            999999999999999988765421             3578899999999999999999999999999999999999999


Q ss_pred             ceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCC
Q 004790          471 HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLP  550 (730)
Q Consensus       471 ~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (730)
                      .+||+|||++..+.....                                                              
T Consensus       160 ~~kL~dfg~~~~~~~~~~--------------------------------------------------------------  177 (280)
T cd05092         160 VVKIGDFGMSRDIYSTDY--------------------------------------------------------------  177 (280)
T ss_pred             CEEECCCCceeEcCCCce--------------------------------------------------------------
Confidence            999999999843210000                                                              


Q ss_pred             CCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCC
Q 004790          551 SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFP  629 (730)
Q Consensus       551 ~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p  629 (730)
                                  ........+++.|+|||++.+..++.++|||||||++|||++ |..||........+..+... ....
T Consensus       178 ------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~-~~~~  244 (280)
T cd05092         178 ------------YRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQG-RELE  244 (280)
T ss_pred             ------------eecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHcC-ccCC
Confidence                        000012346788999999999999999999999999999998 99999776554444333322 2223


Q ss_pred             CCCCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          630 DSPATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       630 ~~~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      ....++..+++||.+||+.||++||++
T Consensus       245 ~~~~~~~~~~~li~~cl~~~P~~Rp~~  271 (280)
T cd05092         245 RPRTCPPEVYAIMQGCWQREPQQRMVI  271 (280)
T ss_pred             CCCCCCHHHHHHHHHHccCChhhCCCH
Confidence            334678899999999999999999995

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=6.4e-39  Score=347.65  Aligned_cols=259  Identities=21%  Similarity=0.298  Sum_probs=201.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEEC-----CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELS-----STRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFE  401 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~-----~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~  401 (730)
                      +..++|++++.||+|+||.||+|++.     .+++.||||+++....  ......+.+|+.+|..+ +||||+++++++.
T Consensus         4 ~~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~   81 (343)
T cd05103           4 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT--HSEHRALMSELKILIHIGHHLNVVNLLGACT   81 (343)
T ss_pred             cchhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCC--hHHHHHHHHHHHHHHhccCCccHhhhcceee
Confidence            34568999999999999999999853     4577899999975432  23445688899999999 7899999999775


Q ss_pred             c-cceeeEEeeecCCCCccccccccC------------------------------------------------------
Q 004790          402 T-DRFSCLVMEYCPGGDLHTLRQRQP------------------------------------------------------  426 (730)
Q Consensus       402 ~-~~~l~LVmEy~~GGsL~~ll~~~~------------------------------------------------------  426 (730)
                      . +..+|+|||||++|+|.+++....                                                      
T Consensus        82 ~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (343)
T cd05103          82 KPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDV  161 (343)
T ss_pred             cCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccc
Confidence            4 557899999999999988775421                                                      


Q ss_pred             -----------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          427 -----------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       427 -----------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                                 ...+++..+..|+.||+.||+|||++||+||||||+|||++.++++||+|||++........       
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~-------  234 (343)
T cd05103         162 EEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPD-------  234 (343)
T ss_pred             hhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcc-------
Confidence                       12367788889999999999999999999999999999999999999999999853210000       


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                         ........+++.|
T Consensus       235 -------------------------------------------------------------------~~~~~~~~~~~~y  247 (343)
T cd05103         235 -------------------------------------------------------------------YVRKGDARLPLKW  247 (343)
T ss_pred             -------------------------------------------------------------------hhhcCCCCCCcce
Confidence                                                                               0000112456789


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRL  654 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~  654 (730)
                      +|||++.+..++.++|||||||++|+|++ |..||.+......+...+......+.....+.++.+++.+||..||++||
T Consensus       248 ~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rp  327 (343)
T cd05103         248 MAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRP  327 (343)
T ss_pred             ECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhccCCCCCCCCCCHHHHHHHHHHccCChhhCc
Confidence            99999999999999999999999999996 99999875443333333322223333334678899999999999999999


Q ss_pred             CchhcHHHHHcC
Q 004790          655 GVKRGATEIKQH  666 (730)
Q Consensus       655 t~~~~a~elL~H  666 (730)
                      +    +.+|++|
T Consensus       328 s----~~eil~~  335 (343)
T cd05103         328 T----FSELVEH  335 (343)
T ss_pred             C----HHHHHHH
Confidence            9    5677765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=8.3e-39  Score=330.12  Aligned_cols=256  Identities=27%  Similarity=0.473  Sum_probs=206.2

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh--hHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA--SRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~--~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +|.+.+.||+|+||.||++++..++..+++|+++.....  .......+.+|+.+++.++||||+++++++.+....|+|
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            589999999999999999999888777778777543221  112334567899999999999999999999999999999


Q ss_pred             eeecCCCCccccccc--cCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          410 MEYCPGGDLHTLRQR--QPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       410 mEy~~GGsL~~ll~~--~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      |||+++++|..++..  ..+..+++..++.++.||+.||.|||++|++|+||||+||+++. +.+||+|||++.......
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~  159 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSC  159 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-CCEeecccCceeecCCCc
Confidence            999999999887753  23357899999999999999999999999999999999999975 679999999874321000


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                  ....
T Consensus       160 ----------------------------------------------------------------------------~~~~  163 (260)
T cd08222         160 ----------------------------------------------------------------------------DLAT  163 (260)
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        0011


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      ...|++.|+|||.+.+..++.++|+||||+++|+|++|..||.+.........+...... ......+.++.+||.+||.
T Consensus       164 ~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~  242 (260)
T cd08222         164 TFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTP-SLPETYSRQLNSIMQSMLN  242 (260)
T ss_pred             CCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCC-CCcchhcHHHHHHHHHHhc
Confidence            235788999999999888999999999999999999999999765443333333222211 1123567899999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      .||++||+    +.++++||||
T Consensus       243 ~~p~~Rp~----~~~il~~~~~  260 (260)
T cd08222         243 KDPSLRPS----AAEILRNPFI  260 (260)
T ss_pred             CChhhCcC----HHHHhhCCCC
Confidence            99999999    7999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=1.3e-38  Score=329.63  Aligned_cols=245  Identities=24%  Similarity=0.335  Sum_probs=200.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++.+.||+|+||.||+|.+..+. .+|+|.+.....    ....+.+|+.+++.++||||+++++++.. ...|+|
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~-~~~lK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v   78 (260)
T cd05069           5 RESLRLDVKLGQGCFGEVWMGTWNGTT-KVAIKTLKPGTM----MPEAFLQEAQIMKKLRHDKLVPLYAVVSE-EPIYIV   78 (260)
T ss_pred             hHHeeeeeeecCcCCCeEEEEEEcCCc-eEEEEEcccCCc----cHHHHHHHHHHHHhCCCCCeeeEEEEEcC-CCcEEE
Confidence            467999999999999999999987665 589998865432    22456789999999999999999998864 568999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+.+++|.+++.......+++..+..++.||+.||.|||+.||+||||||+|||++.++.++|+|||++........ 
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~-  157 (260)
T cd05069          79 TEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEY-  157 (260)
T ss_pred             EEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEccCCcc-
Confidence            9999999999988765555688999999999999999999999999999999999999999999999999843210000 


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                                ......
T Consensus       158 --------------------------------------------------------------------------~~~~~~  163 (260)
T cd05069         158 --------------------------------------------------------------------------TARQGA  163 (260)
T ss_pred             --------------------------------------------------------------------------cccCCC
Confidence                                                                                      000112


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .++..|+|||++.+..++.++|+|||||++|||++ |+.||.+......+..+. .....+.....+..+++||++||.+
T Consensus       164 ~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~  242 (260)
T cd05069         164 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVE-RGYRMPCPQGCPESLHELMKLCWKK  242 (260)
T ss_pred             ccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCcccCHHHHHHHHHHccC
Confidence            45778999999999889999999999999999999 999998866554443333 2333344456788999999999999


Q ss_pred             CCCCcCCc
Q 004790          649 EPQHRLGV  656 (730)
Q Consensus       649 DP~~R~t~  656 (730)
                      ||++||++
T Consensus       243 ~p~~Rp~~  250 (260)
T cd05069         243 DPDERPTF  250 (260)
T ss_pred             CcccCcCH
Confidence            99999994

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=8.8e-39  Score=339.86  Aligned_cols=255  Identities=22%  Similarity=0.319  Sum_probs=202.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECC-------CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSS-------TRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTH  399 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~-------t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~  399 (730)
                      +..++|.+++.||+|+||.||++++..       +...+|+|+++...  .......+.+|+++++.+ +||||++++++
T Consensus        15 ~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~   92 (307)
T cd05098          15 VPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDA--TEKDLSDLISEMEMMKMIGKHKNIINLLGA   92 (307)
T ss_pred             eehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCC--ChHHHHHHHHHHHHHHHhcCCCCEeeEEEE
Confidence            344689999999999999999998743       23469999997542  223445678899999999 89999999999


Q ss_pred             ccccceeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEE
Q 004790          400 FETDRFSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVL  465 (730)
Q Consensus       400 f~~~~~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNIL  465 (730)
                      +..+..+|+||||+++|+|..++....              ...+++.+++.++.||+.||+|||++|++||||||+|||
T Consensus        93 ~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nil  172 (307)
T cd05098          93 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVL  172 (307)
T ss_pred             EecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheE
Confidence            999999999999999999998886542              135788899999999999999999999999999999999


Q ss_pred             ecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCc
Q 004790          466 VRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRS  545 (730)
Q Consensus       466 l~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (730)
                      ++.++.+||+|||++........                                                         
T Consensus       173 l~~~~~~kL~dfg~a~~~~~~~~---------------------------------------------------------  195 (307)
T cd05098         173 VTEDNVMKIADFGLARDIHHIDY---------------------------------------------------------  195 (307)
T ss_pred             EcCCCcEEECCCcccccccccch---------------------------------------------------------
Confidence            99999999999999843210000                                                         


Q ss_pred             cCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecc
Q 004790          546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQ  624 (730)
Q Consensus       546 ~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~  624 (730)
                                       ........+++.|+|||++.+..++.++|+|||||++|||++ |..||.+... ..+...+..
T Consensus       196 -----------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~-~~~~~~~~~  257 (307)
T cd05098         196 -----------------YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV-EELFKLLKE  257 (307)
T ss_pred             -----------------hhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCH-HHHHHHHHc
Confidence                             000001134578999999999999999999999999999998 9999976543 333333333


Q ss_pred             cccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhc
Q 004790          625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRG  659 (730)
Q Consensus       625 ~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~  659 (730)
                      ....+.....+.++++||.+||..+|++||++.+.
T Consensus       258 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  292 (307)
T cd05098         258 GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQL  292 (307)
T ss_pred             CCCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHH
Confidence            33334445678899999999999999999995433

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=1.2e-38  Score=338.04  Aligned_cols=254  Identities=20%  Similarity=0.305  Sum_probs=203.6

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEEC-------CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELS-------STRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYT  398 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~-------~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~  398 (730)
                      .+...+|.+.+.||+|+||.||+|++.       ..+..||+|++....  .......+.+|+.+++.+ +||||+++++
T Consensus        11 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~i~~~~~   88 (304)
T cd05101          11 EFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLG   88 (304)
T ss_pred             cccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeeccccc--chHHHHHHHHHHHHHHhhccCCCchheeE
Confidence            356688999999999999999999853       234579999986542  224456788999999999 8999999999


Q ss_pred             cccccceeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccE
Q 004790          399 HFETDRFSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENV  464 (730)
Q Consensus       399 ~f~~~~~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNI  464 (730)
                      ++......|+||||+++|+|..++....              ...++...+..++.||+.||.|||++||+||||||+||
T Consensus        89 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Ni  168 (304)
T cd05101          89 ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNV  168 (304)
T ss_pred             EEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceE
Confidence            9999999999999999999998876532              23577788899999999999999999999999999999


Q ss_pred             EecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          465 LVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       465 Ll~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                      |++.++.+||+|||+++.+.....                                                        
T Consensus       169 li~~~~~~kl~D~g~~~~~~~~~~--------------------------------------------------------  192 (304)
T cd05101         169 LVTENNVMKIADFGLARDVNNIDY--------------------------------------------------------  192 (304)
T ss_pred             EEcCCCcEEECCCccceecccccc--------------------------------------------------------
Confidence            999999999999999854311000                                                        


Q ss_pred             ccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeec
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVG  623 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~  623 (730)
                                        ........+++.|+|||++.+..++.++|||||||++|+|++ |..||.+....+....+ .
T Consensus       193 ------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~-~  253 (304)
T cd05101         193 ------------------YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLL-K  253 (304)
T ss_pred             ------------------cccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHH-H
Confidence                              000111246778999999999999999999999999999998 89999876544433333 2


Q ss_pred             ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       624 ~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      ...........+.++++||.+||..+|++||++.
T Consensus       254 ~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  287 (304)
T cd05101         254 EGHRMDKPANCTNELYMMMRDCWHAIPSHRPTFK  287 (304)
T ss_pred             cCCcCCCCCCCCHHHHHHHHHHcccChhhCCCHH
Confidence            3333333446788999999999999999999953

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=1.5e-38  Score=329.72  Aligned_cols=252  Identities=23%  Similarity=0.288  Sum_probs=203.9

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCe---EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRC---YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~---~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      ..++|+..+.||+|+||.||+|+++.++.   .+|||.++....  ......+..|+++++.++||||+++++++.+...
T Consensus         3 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (268)
T cd05063           3 HPSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYT--EKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKP   80 (268)
T ss_pred             ChHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCC--HHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCC
Confidence            34679999999999999999999876554   799999865422  2334567889999999999999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      .|+||||+++++|..++... ...+++..+..++.|++.||+|||+.||+||||||+|||++.++.+||+|||++.....
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~  159 (268)
T cd05063          81 AMIITEYMENGALDKYLRDH-DGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLED  159 (268)
T ss_pred             cEEEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceeccc
Confidence            99999999999999887653 25689999999999999999999999999999999999999999999999999854211


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ....                                                                         ...
T Consensus       160 ~~~~-------------------------------------------------------------------------~~~  166 (268)
T cd05063         160 DPEG-------------------------------------------------------------------------TYT  166 (268)
T ss_pred             cccc-------------------------------------------------------------------------cee
Confidence            0000                                                                         000


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~  644 (730)
                      ......++.|+|||++.+..++.++|||||||++|||++ |+.||...........+. .....|.....+.++.+||.+
T Consensus       167 ~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~li~~  245 (268)
T cd05063         167 TSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAIN-DGFRLPAPMDCPSAVYQLMLQ  245 (268)
T ss_pred             ccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHh-cCCCCCCCCCCCHHHHHHHHH
Confidence            001123567999999999889999999999999999997 999998765544333333 334455555678899999999


Q ss_pred             hhcCCCCCcCCch
Q 004790          645 LLVKEPQHRLGVK  657 (730)
Q Consensus       645 lL~~DP~~R~t~~  657 (730)
                      ||..+|++||++.
T Consensus       246 c~~~~p~~Rp~~~  258 (268)
T cd05063         246 CWQQDRARRPRFV  258 (268)
T ss_pred             HcCCCcccCcCHH
Confidence            9999999999953

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=1.8e-38  Score=329.71  Aligned_cols=257  Identities=23%  Similarity=0.327  Sum_probs=206.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCe---EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRC---YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~---~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      ..+|++.+.||+|+||.||+|+++.+++   .||||++.+..  .......+..|+.+++.++||||+++++++.++..+
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~   80 (269)
T cd05065           3 VSCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGY--TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPV   80 (269)
T ss_pred             hHHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCce
Confidence            4579999999999999999999887664   59999986542  234456788999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+++++|..++... .+.+++.+++.++.|++.||.|||++|++||||||+|||++.++.+||+|||++......
T Consensus        81 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~  159 (269)
T cd05065          81 MIITEFMENGALDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDD  159 (269)
T ss_pred             EEEEecCCCCcHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccccccC
Confidence            9999999999999887654 346899999999999999999999999999999999999999999999999987432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ...                                                                       +.....
T Consensus       160 ~~~-----------------------------------------------------------------------~~~~~~  168 (269)
T cd05065         160 TSD-----------------------------------------------------------------------PTYTSS  168 (269)
T ss_pred             ccc-----------------------------------------------------------------------cccccc
Confidence            000                                                                       000000


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ....++..|+|||++.+..++.++|+|||||++|||++ |..||...........+ ......+.....+..+.++|.+|
T Consensus       169 ~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~li~~~  247 (269)
T cd05065         169 LGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAI-EQDYRLPPPMDCPTALHQLMLDC  247 (269)
T ss_pred             cCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHH-HcCCcCCCcccCCHHHHHHHHHH
Confidence            00123567999999999999999999999999999886 99999876554433333 23344455567788999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHc
Q 004790          646 LVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~  665 (730)
                      |..+|++||++    ++++.
T Consensus       248 l~~~p~~Rp~~----~~i~~  263 (269)
T cd05065         248 WQKDRNARPKF----GQIVS  263 (269)
T ss_pred             cCCChhhCcCH----HHHHH
Confidence            99999999995    55553

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=5.7e-39  Score=345.41  Aligned_cols=273  Identities=26%  Similarity=0.348  Sum_probs=207.5

Q ss_pred             CCeEE-EeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHH-----------HHHHHHHHHHHHHhcCCCCCccccc
Q 004790          331 SHFRL-LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRK-----------KLTRAQTEREILQLLDHPFLPTLYT  398 (730)
Q Consensus       331 ~~y~i-l~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~-----------~~~~~~~E~~IL~~L~HPnIV~L~~  398 (730)
                      ++|.. .+.||.|+||+||+|++..+++.||+|++.+.......           ....+.+|+++++.++||||+++++
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   87 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD   87 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence            45654 46799999999999999999999999998764332210           0124678999999999999999999


Q ss_pred             cccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccc
Q 004790          399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFD  478 (730)
Q Consensus       399 ~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFG  478 (730)
                      +|..+...|+||||+. |+|..++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||
T Consensus        88 ~~~~~~~~~lv~e~~~-~~l~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg  164 (335)
T PTZ00024         88 VYVEGDFINLVMDIMA-SDLKKVVDRK--IRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFG  164 (335)
T ss_pred             EEecCCcEEEEEeccc-cCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCcc
Confidence            9999999999999995 6888877654  568999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccc
Q 004790          479 LSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELV  558 (730)
Q Consensus       479 lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (730)
                      ++......... ..               ...+                           ...                 
T Consensus       165 ~~~~~~~~~~~-~~---------------~~~~---------------------------~~~-----------------  184 (335)
T PTZ00024        165 LARRYGYPPYS-DT---------------LSKD---------------------------ETM-----------------  184 (335)
T ss_pred             ceeeccccccc-cc---------------cccc---------------------------ccc-----------------
Confidence            98543211000 00               0000                           000                 


Q ss_pred             cccccccccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec---ccc--cCC---
Q 004790          559 AEPTAARSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG---QQL--RFP---  629 (730)
Q Consensus       559 ~e~~~~~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~---~~~--~~p---  629 (730)
                        ..........+++.|+|||++.+.. ++.++|+|||||++|||++|+.||.+.+..+.+..+..   ...  .++   
T Consensus       185 --~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  262 (335)
T PTZ00024        185 --QRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAK  262 (335)
T ss_pred             --cccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchh
Confidence              0000112235789999999998754 68999999999999999999999987765443322211   000  000   


Q ss_pred             ------------------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          630 ------------------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       630 ------------------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                                        .....+.++.+||++||..||++||+    +++++.||||+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s----~~~~l~~~~~~~~  319 (335)
T PTZ00024        263 KLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERIS----AKEALKHEYFKSD  319 (335)
T ss_pred             hcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccC----HHHHhcCcccCCC
Confidence                              01234778899999999999999999    7999999999853

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=1.3e-38  Score=327.71  Aligned_cols=249  Identities=23%  Similarity=0.327  Sum_probs=201.6

Q ss_pred             eEEccCCcEEEEEEEECC-CC--eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeec
Q 004790          337 KRLGCGDIGSVYLSELSS-TR--CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYC  413 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~-t~--~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~  413 (730)
                      +.||+|++|.||+|.+.. .+  ..||+|++......  .....+.+|+.+++.++||||+++++.+.. ..+|+||||+
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~   77 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS--DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELA   77 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH--HHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEec
Confidence            468999999999999865 33  36999999876543  556778899999999999999999999988 8899999999


Q ss_pred             CCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccC
Q 004790          414 PGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS  493 (730)
Q Consensus       414 ~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~  493 (730)
                      ++++|..++.......+++..++.++.||+.||.|||++|++||||||+|||++.++.+||+|||++..+.....     
T Consensus        78 ~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~-----  152 (257)
T cd05040          78 PLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNED-----  152 (257)
T ss_pred             CCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEecccccccccccccc-----
Confidence            999999988765435689999999999999999999999999999999999999999999999999854310000     


Q ss_pred             CCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCc
Q 004790          494 SLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTH  573 (730)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~  573 (730)
                                                                                          .........++.
T Consensus       153 --------------------------------------------------------------------~~~~~~~~~~~~  164 (257)
T cd05040         153 --------------------------------------------------------------------HYVMEEHLKVPF  164 (257)
T ss_pred             --------------------------------------------------------------------ceecccCCCCCc
Confidence                                                                                000001235778


Q ss_pred             ccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCC
Q 004790          574 EYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQH  652 (730)
Q Consensus       574 ~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~  652 (730)
                      .|+|||++.+..++.++|||||||++|||++ |+.||......+.+..+.......+.....+..+.+||.+||..+|.+
T Consensus       165 ~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  244 (257)
T cd05040         165 AWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPAD  244 (257)
T ss_pred             eecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCccc
Confidence            8999999999999999999999999999998 999998765544444333333333334456889999999999999999


Q ss_pred             cCCchhcHHHHHc
Q 004790          653 RLGVKRGATEIKQ  665 (730)
Q Consensus       653 R~t~~~~a~elL~  665 (730)
                      ||++    .++++
T Consensus       245 Rps~----~~~~~  253 (257)
T cd05040         245 RPTF----AALRE  253 (257)
T ss_pred             CCCH----HHHHH
Confidence            9994    55543

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=1.5e-38  Score=335.25  Aligned_cols=253  Identities=23%  Similarity=0.325  Sum_probs=202.7

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      ..+|.+.+.||+|+||.||++++..     ++..+++|.+.....   .....+.+|+++++.++||||+++++++....
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (291)
T cd05094           4 RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTL---AARKDFQREAELLTNLQHEHIVKFYGVCGDGD   80 (291)
T ss_pred             hHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccH---HHHHHHHHHHHHHhcCCCCCcceEEEEEccCC
Confidence            4579999999999999999998643     456799999865432   33356788999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG  470 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g  470 (730)
                      ..|+||||+++++|.+++....              ...+++..++.++.||+.||+|||++||+||||||+|||++.++
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~  160 (291)
T cd05094          81 PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANL  160 (291)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCC
Confidence            9999999999999998876432              24588999999999999999999999999999999999999999


Q ss_pred             ceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCC
Q 004790          471 HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLP  550 (730)
Q Consensus       471 ~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (730)
                      .++|+|||++.......                                                               
T Consensus       161 ~~~l~dfg~a~~~~~~~---------------------------------------------------------------  177 (291)
T cd05094         161 LVKIGDFGMSRDVYSTD---------------------------------------------------------------  177 (291)
T ss_pred             cEEECCCCcccccCCCc---------------------------------------------------------------
Confidence            99999999984321000                                                               


Q ss_pred             CCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCC
Q 004790          551 SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFP  629 (730)
Q Consensus       551 ~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p  629 (730)
                                 .........|++.|+|||++.+..++.++|||||||++|||++ |+.||........+..+..+.. ..
T Consensus       178 -----------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~-~~  245 (291)
T cd05094         178 -----------YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRV-LE  245 (291)
T ss_pred             -----------eeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhCCCC-CC
Confidence                       0000112357889999999999999999999999999999998 9999977655444333322222 12


Q ss_pred             CCCCCChhHHHHHHhhhcCCCCCcCCchhcH
Q 004790          630 DSPATSYASRDLIRGLLVKEPQHRLGVKRGA  660 (730)
Q Consensus       630 ~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a  660 (730)
                      .....+..+.+||.+||..||.+||++.+..
T Consensus       246 ~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~  276 (291)
T cd05094         246 RPRVCPKEVYDIMLGCWQREPQQRLNIKEIY  276 (291)
T ss_pred             CCccCCHHHHHHHHHHcccChhhCcCHHHHH
Confidence            2335688999999999999999999964433

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=1.5e-38  Score=336.09  Aligned_cols=260  Identities=27%  Similarity=0.382  Sum_probs=207.0

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccce
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRF  405 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~  405 (730)
                      .+..++|++.+.||+|+||.||+|.+..+++.||||.+++....  .....+.+|+.++..+ +||||+++++++.++..
T Consensus        11 ~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~   88 (296)
T cd06618          11 PADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNK--EENKRILMDLDVVLKSHDCPYIVKCYGYFITDSD   88 (296)
T ss_pred             cCCcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCCh--HHHHHHHHHHHHHHhccCCCchHhhheeeecCCe
Confidence            45678999999999999999999999999999999999765322  2234455677766655 59999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEeccccccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      +|+||||+ +++|..++.... ..+++..+..++.||+.||.|||+ .||+||||||+|||++.++.+||+|||++....
T Consensus        89 ~~~v~e~~-~~~l~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~  166 (296)
T cd06618          89 VFICMELM-STCLDKLLKRIQ-GPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLV  166 (296)
T ss_pred             EEEEeecc-CcCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhcc
Confidence            99999998 557777665532 478999999999999999999997 699999999999999999999999999874321


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                             .
T Consensus       167 ~~-----------------------------------------------------------------------------~  169 (296)
T cd06618         167 DS-----------------------------------------------------------------------------K  169 (296)
T ss_pred             CC-----------------------------------------------------------------------------C
Confidence            00                                                                             0


Q ss_pred             cccccccCcccCChhhhccCC----CCCcceeechhHHHHHHhhCCCCCCCCCC-ccceeeeeccc-ccCCCCCCCChhH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEG----HGSAVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNVVGQQ-LRFPDSPATSYAS  638 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~----~~~~sDIWSLG~iLyELltG~~PF~g~~~-~~~l~~i~~~~-~~~p~~~~~s~~~  638 (730)
                      ......|++.|+|||.+.+..    ++.++|||||||++|+|++|+.||..... .+.+..++... ..++....++.++
T Consensus       170 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  249 (296)
T cd06618         170 AKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPDF  249 (296)
T ss_pred             cccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence            001125788999999997664    78899999999999999999999975322 22232333222 2233333468899


Q ss_pred             HHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          639 RDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       639 ~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ++||.+||..||++||+    +.++++||||+.
T Consensus       250 ~~li~~~l~~~p~~Rp~----~~~il~~~~~~~  278 (296)
T cd06618         250 CSFVDLCLTKDHRKRPK----YRELLQHPFIRR  278 (296)
T ss_pred             HHHHHHHccCChhhCCC----HHHHhcChhhhc
Confidence            99999999999999999    699999999985

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=3.9e-38  Score=325.91  Aligned_cols=247  Identities=20%  Similarity=0.315  Sum_probs=202.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|++.+.||+|+||.||++.+.. +..+|+|.+....    .....+.+|+++++.++|+||+++++.+.. ...|
T Consensus         3 ~~~~~~~~~~~lg~g~~~~vy~~~~~~-~~~~~iK~~~~~~----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~   76 (260)
T cd05073           3 IPRESLKLEKKLGAGQFGEVWMATYNK-HTKVAVKTMKPGS----MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIY   76 (260)
T ss_pred             ccccceeEEeEecCccceEEEEEEecC-CccEEEEecCCCh----hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeE
Confidence            456889999999999999999998654 4469999886543    234567889999999999999999999887 7789


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+++++|.+++....+..+++..+..++.||+.||.|||+.|++||||||+||+++.++.+||+|||++.......
T Consensus        77 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  156 (260)
T cd05073          77 IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE  156 (260)
T ss_pred             EEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeeccCCC
Confidence            99999999999998877656678888999999999999999999999999999999999999999999999884321000


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                      .                                                                           ....
T Consensus       157 ~---------------------------------------------------------------------------~~~~  161 (260)
T cd05073         157 Y---------------------------------------------------------------------------TARE  161 (260)
T ss_pred             c---------------------------------------------------------------------------cccc
Confidence            0                                                                           0000


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...++..|+|||++.+..++.++|+|||||++|+|++ |+.||.+.+.......+ .+....+.....+.++.++|.+||
T Consensus       162 ~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l  240 (260)
T cd05073         162 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRAL-ERGYRMPRPENCPEELYNIMMRCW  240 (260)
T ss_pred             CCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHH-hCCCCCCCcccCCHHHHHHHHHHc
Confidence            1235677999999998889999999999999999998 99999876554333322 233334444567889999999999


Q ss_pred             cCCCCCcCCc
Q 004790          647 VKEPQHRLGV  656 (730)
Q Consensus       647 ~~DP~~R~t~  656 (730)
                      ..||++||++
T Consensus       241 ~~~p~~Rp~~  250 (260)
T cd05073         241 KNRPEERPTF  250 (260)
T ss_pred             ccCcccCcCH
Confidence            9999999995

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-38  Score=331.76  Aligned_cols=255  Identities=29%  Similarity=0.439  Sum_probs=203.5

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc--ceeeEEe
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD--RFSCLVM  410 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~--~~l~LVm  410 (730)
                      |++++.||.|+||.||+|.+..+++.+|+|++.+.. ........+.+|+++++.++||||+++++++...  ..+|+||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   79 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMEN-EKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVF   79 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEeccc-ccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEe
Confidence            788999999999999999999999999999998754 2223445677899999999999999999999887  8999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++ ++|..++... ...+++..++.++.||+.||+|||++|++|+||||+|||++.++.+||+|||++........  
T Consensus        80 e~~~-~~l~~~~~~~-~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~--  155 (287)
T cd07840          80 EYMD-HDLTGLLDSP-EVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNS--  155 (287)
T ss_pred             cccc-ccHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCc--
Confidence            9996 5888776553 24789999999999999999999999999999999999999999999999999843210000  


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                               .......
T Consensus       156 -------------------------------------------------------------------------~~~~~~~  162 (287)
T cd07840         156 -------------------------------------------------------------------------ADYTNRV  162 (287)
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0001125


Q ss_pred             cCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-----ccCCC--------------
Q 004790          571 GTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-----LRFPD--------------  630 (730)
Q Consensus       571 GT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-----~~~p~--------------  630 (730)
                      ++..|+|||.+.+. .++.++|||||||++|||++|+.||...+....+..+....     ..++.              
T Consensus       163 ~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (287)
T cd07840         163 ITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKK  242 (287)
T ss_pred             cccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhccccc
Confidence            67889999988764 57899999999999999999999998765432222111100     00000              


Q ss_pred             ---------CCC-CChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          631 ---------SPA-TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       631 ---------~~~-~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                               ... .+.++.++|++||..||.+||+    +.++++||||
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~----~~~~l~~~~~  287 (287)
T cd07840         243 PYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRIS----ADQALQHEYF  287 (287)
T ss_pred             cchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcC----HHHHhhCcCC
Confidence                     011 3778899999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-38  Score=331.45  Aligned_cols=254  Identities=29%  Similarity=0.471  Sum_probs=205.7

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeee
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEY  412 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy  412 (730)
                      |++.+.||.|++|.||++.+..+++.+|+|.++..... ......+.+|+++|+.++||||+++++++.++..+|+||||
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   79 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFES-EGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEF   79 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEecccccc-chhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEec
Confidence            67789999999999999999999999999998765432 23445678899999999999999999999999999999999


Q ss_pred             cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccccc
Q 004790          413 CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT  492 (730)
Q Consensus       413 ~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~  492 (730)
                      +++ +|..++.... ..+++..+..++.||+.||.|||++||+|+||||+||+++.++.++|+|||++.......     
T Consensus        80 ~~~-~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~-----  152 (283)
T cd05118          80 MDT-DLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPV-----  152 (283)
T ss_pred             cCC-CHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCc-----
Confidence            965 7877665532 578999999999999999999999999999999999999999999999999884321000     


Q ss_pred             CCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccC
Q 004790          493 SSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT  572 (730)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT  572 (730)
                                                                                             .......++
T Consensus       153 -----------------------------------------------------------------------~~~~~~~~~  161 (283)
T cd05118         153 -----------------------------------------------------------------------RPYTHYVVT  161 (283)
T ss_pred             -----------------------------------------------------------------------ccccCccCc
Confidence                                                                                   000113578


Q ss_pred             cccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-------------------cccCC---
Q 004790          573 HEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-------------------QLRFP---  629 (730)
Q Consensus       573 ~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-------------------~~~~p---  629 (730)
                      ..|+|||.+.+. .++.++|+|||||++|+|++|+.||.+.+..+.+..+...                   ...++   
T Consensus       162 ~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (283)
T cd05118         162 RWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKA  241 (283)
T ss_pred             ccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhcccc
Confidence            899999999877 6899999999999999999999999876543332221110                   00011   


Q ss_pred             ------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          630 ------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       630 ------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                            ..+..+.++++||++||..||.+||+    +.+++.||||
T Consensus       242 ~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~----~~~ll~~~~~  283 (283)
T cd05118         242 GMPLPKLFPNASPQALDLLSQMLHYDPHKRIT----AEQALAHPYF  283 (283)
T ss_pred             ccCHHHhhhhhCHHHHHHHHHHhccCcccCcC----HHHHhhCCCC
Confidence                  11245788999999999999999999    7999999998

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2e-38  Score=327.12  Aligned_cols=245  Identities=22%  Similarity=0.300  Sum_probs=196.1

Q ss_pred             eEEccCCcEEEEEEEECCCC---eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeec
Q 004790          337 KRLGCGDIGSVYLSELSSTR---CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYC  413 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~---~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~  413 (730)
                      ++||+|+||.||+|.+..++   ..||+|.+......  .....+.+|+.+++.++||||+++++++.. ...++||||+
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~   77 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA--AGKKEFLREASVMAQLDHPCIVRLIGVCKG-EPLMLVMELA   77 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccch--HHHHHHHHHHHHHHhcCCCCeeeEEEEEcC-CceEEEEEeC
Confidence            46999999999999876554   78999999766543  344568889999999999999999998764 4679999999


Q ss_pred             CCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccC
Q 004790          414 PGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS  493 (730)
Q Consensus       414 ~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~  493 (730)
                      ++++|.+++...  ..+++..+..++.||+.||+|||..||+||||||+|||++.++.+||+|||++..+.......   
T Consensus        78 ~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~---  152 (257)
T cd05060          78 PLGPLLKYLKKR--REIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYY---  152 (257)
T ss_pred             CCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCCccc---
Confidence            999999988765  368999999999999999999999999999999999999999999999999985431100000   


Q ss_pred             CCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCc
Q 004790          494 SLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTH  573 (730)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~  573 (730)
                                                                                            .......++.
T Consensus       153 ----------------------------------------------------------------------~~~~~~~~~~  162 (257)
T cd05060         153 ----------------------------------------------------------------------RATTAGRWPL  162 (257)
T ss_pred             ----------------------------------------------------------------------ccccCccccc
Confidence                                                                                  0000112456


Q ss_pred             ccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCC
Q 004790          574 EYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQH  652 (730)
Q Consensus       574 ~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~  652 (730)
                      .|+|||.+.+..++.++|||||||++|||++ |..||...+..... ..+......+....++..+++||.+||..||++
T Consensus       163 ~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~  241 (257)
T cd05060         163 KWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVI-AMLESGERLPRPEECPQEIYSIMLSCWKYRPED  241 (257)
T ss_pred             cccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHH-HHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhh
Confidence            8999999999999999999999999999997 99999876544332 222233333444567889999999999999999


Q ss_pred             cCCchhcH
Q 004790          653 RLGVKRGA  660 (730)
Q Consensus       653 R~t~~~~a  660 (730)
                      ||++.+..
T Consensus       242 Rp~~~~l~  249 (257)
T cd05060         242 RPTFSELE  249 (257)
T ss_pred             CcCHHHHH
Confidence            99964333

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=1.1e-38  Score=338.19  Aligned_cols=252  Identities=27%  Similarity=0.441  Sum_probs=207.1

Q ss_pred             EEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeec
Q 004790          334 RLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYC  413 (730)
Q Consensus       334 ~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~  413 (730)
                      ....+||+|+||.||++.++.++..||||++....   ......+.+|+.+++.++|+||+++++.|..+...|+||||+
T Consensus        23 ~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   99 (292)
T cd06657          23 DNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRK---QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL   99 (292)
T ss_pred             hhHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccc---hhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecC
Confidence            33467999999999999999999999999985432   233456888999999999999999999999999999999999


Q ss_pred             CCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccC
Q 004790          414 PGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS  493 (730)
Q Consensus       414 ~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~  493 (730)
                      ++++|..++..   ..+++..++.++.||+.||+|||++||+||||||+||+++.+++++|+|||++......       
T Consensus       100 ~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~-------  169 (292)
T cd06657         100 EGGALTDIVTH---TRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-------  169 (292)
T ss_pred             CCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceecccc-------
Confidence            99999987654   35889999999999999999999999999999999999999999999999987321000       


Q ss_pred             CCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCc
Q 004790          494 SLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTH  573 (730)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~  573 (730)
                                                                                           ........||+
T Consensus       170 ---------------------------------------------------------------------~~~~~~~~~~~  180 (292)
T cd06657         170 ---------------------------------------------------------------------VPRRKSLVGTP  180 (292)
T ss_pred             ---------------------------------------------------------------------cccccccccCc
Confidence                                                                                 00011246889


Q ss_pred             ccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-cccCCCCCCCChhHHHHHHhhhcCCCCC
Q 004790          574 EYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-QLRFPDSPATSYASRDLIRGLLVKEPQH  652 (730)
Q Consensus       574 ~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-~~~~p~~~~~s~~~~dLI~~lL~~DP~~  652 (730)
                      .|+|||.+.+..++.++|+|||||++|+|++|..||.+......+..+... ...+......+..+.++|.+||..||.+
T Consensus       181 ~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~  260 (292)
T cd06657         181 YWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQ  260 (292)
T ss_pred             cccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCccc
Confidence            999999998888999999999999999999999999875443322221111 1122223456888999999999999999


Q ss_pred             cCCchhcHHHHHcCCCCCC
Q 004790          653 RLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       653 R~t~~~~a~elL~HPfF~~  671 (730)
                      |++    +.++++||||..
T Consensus       261 R~~----~~~ll~~~~~~~  275 (292)
T cd06657         261 RAT----AAELLKHPFLAK  275 (292)
T ss_pred             CcC----HHHHhcChHHhc
Confidence            999    789999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=2.3e-38  Score=334.59  Aligned_cols=251  Identities=23%  Similarity=0.317  Sum_probs=199.0

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECC----------------CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCc
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSS----------------TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLP  394 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~----------------t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV  394 (730)
                      ++|++.+.||+|+||.||++++..                +...||+|++....  .......+.+|+.+|+.++||||+
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~--~~~~~~~~~~E~~~l~~l~~~~i~   82 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA--NKNARNDFLKEIKIMSRLKDPNII   82 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCCcc
Confidence            579999999999999999996543                34579999987542  223445788999999999999999


Q ss_pred             cccccccccceeeEEeeecCCCCccccccccC---------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEE
Q 004790          395 TLYTHFETDRFSCLVMEYCPGGDLHTLRQRQP---------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVL  465 (730)
Q Consensus       395 ~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~---------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNIL  465 (730)
                      ++++++..+...|+||||+++++|..++....         ...+++..+..++.||+.||+|||++||+||||||+|||
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nil  162 (296)
T cd05095          83 RLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCL  162 (296)
T ss_pred             eEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEE
Confidence            99999999999999999999999998876532         124677889999999999999999999999999999999


Q ss_pred             ecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCc
Q 004790          466 VRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRS  545 (730)
Q Consensus       466 l~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (730)
                      ++.++.++|+|||++..+.....                                                         
T Consensus       163 i~~~~~~~l~dfg~~~~~~~~~~---------------------------------------------------------  185 (296)
T cd05095         163 VGKNYTIKIADFGMSRNLYSGDY---------------------------------------------------------  185 (296)
T ss_pred             EcCCCCEEeccCcccccccCCcc---------------------------------------------------------
Confidence            99999999999999853210000                                                         


Q ss_pred             cCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh--CCCCCCCCCCccceeeee-
Q 004790          546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY--GKTPFKGSGNRATLFNVV-  622 (730)
Q Consensus       546 ~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt--G~~PF~g~~~~~~l~~i~-  622 (730)
                                       ........+++.|+|||++.+..++.++|+|||||++|||++  |..||......+.+.+.. 
T Consensus       186 -----------------~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~  248 (296)
T cd05095         186 -----------------YRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIENTGE  248 (296)
T ss_pred             -----------------eeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHHHHHH
Confidence                             000011245678999999998889999999999999999998  789997655433322211 


Q ss_pred             -----cccccCCCCCCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          623 -----GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       623 -----~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                           .....++....++..+++||.+||..||.+||++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~  288 (296)
T cd05095         249 FFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQ  288 (296)
T ss_pred             HHhhccccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHH
Confidence                 11222344456778999999999999999999954

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=3.1e-38  Score=330.74  Aligned_cols=248  Identities=21%  Similarity=0.286  Sum_probs=193.1

Q ss_pred             Ce-EEEeEEccCCcEEEEEEEE----CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc--cc
Q 004790          332 HF-RLLKRLGCGDIGSVYLSEL----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET--DR  404 (730)
Q Consensus       332 ~y-~il~~LG~G~fG~Vyla~~----~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~--~~  404 (730)
                      +| ++++.||+|+||+||++..    ..+++.||+|+++....  ......+.+|+++|+.++||||+++++++..  ..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   81 (283)
T cd05080           4 RYLKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECG--QQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGK   81 (283)
T ss_pred             hhceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccC--hHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCc
Confidence            45 9999999999999988753    45678999999875421  2334567789999999999999999998764  45


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|+||||+++++|.+++...   .+++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++....
T Consensus        82 ~~~lv~e~~~~~~l~~~~~~~---~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  158 (283)
T cd05080          82 GLQLIMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  158 (283)
T ss_pred             eEEEEecCCCCCCHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccC
Confidence            689999999999999887654   58999999999999999999999999999999999999999999999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ......                                                                         .
T Consensus       159 ~~~~~~-------------------------------------------------------------------------~  165 (283)
T cd05080         159 EGHEYY-------------------------------------------------------------------------R  165 (283)
T ss_pred             Ccchhh-------------------------------------------------------------------------c
Confidence            100000                                                                         0


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc--ce------------eeeecccccCCC
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA--TL------------FNVVGQQLRFPD  630 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~--~l------------~~i~~~~~~~p~  630 (730)
                      ......++..|+|||++.+..++.++|||||||++|||++|..||.......  .+            ...+......+.
T Consensus       166 ~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (283)
T cd05080         166 VREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPC  245 (283)
T ss_pred             cCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCC
Confidence            0001235667999999998889999999999999999999999986532210  00            000111122233


Q ss_pred             CCCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          631 SPATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       631 ~~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      ....+.++++||.+||..||++||+++
T Consensus       246 ~~~~~~~~~~li~~cl~~~p~~Rps~~  272 (283)
T cd05080         246 PKNCPQEVYILMKNCWETEAKFRPTFR  272 (283)
T ss_pred             CCCCCHHHHHHHHHHhccChhhCCCHH
Confidence            345688999999999999999999953

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=1.6e-38  Score=342.80  Aligned_cols=255  Identities=27%  Similarity=0.399  Sum_probs=205.0

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc-cceee
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET-DRFSC  407 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~-~~~l~  407 (730)
                      ..++|++++.||.|+||.||+|.+..+++.||+|++.+... .......+.+|+++++.++||||++++++|.. ....|
T Consensus         8 ~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~   86 (328)
T cd07856           8 ITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFS-TPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIY   86 (328)
T ss_pred             cccceEEEEeecccCCeEEEEEEECCCCCEEEEEEeccccc-ccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEE
Confidence            35789999999999999999999999999999998865432 22334567789999999999999999999865 56789


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+ +++|..++..   ..+++..++.++.||+.||.|||++||+||||||.|||++.++.+||+|||++....   
T Consensus        87 lv~e~~-~~~L~~~~~~---~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~---  159 (328)
T cd07856          87 FVTELL-GTDLHRLLTS---RPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQD---  159 (328)
T ss_pred             EEeehh-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccC---
Confidence            999999 6788877654   358888999999999999999999999999999999999999999999999873210   


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                  ....
T Consensus       160 ----------------------------------------------------------------------------~~~~  163 (328)
T cd07856         160 ----------------------------------------------------------------------------PQMT  163 (328)
T ss_pred             ----------------------------------------------------------------------------CCcC
Confidence                                                                                        0011


Q ss_pred             ccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCcccee---------------ee----------
Q 004790          568 SFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF---------------NV----------  621 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~---------------~i----------  621 (730)
                      ..++++.|+|||++.+ ..++.++|+|||||++|+|++|+.||.+......+.               .+          
T Consensus       164 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (328)
T cd07856         164 GYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQ  243 (328)
T ss_pred             CCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHh
Confidence            2467889999999876 568999999999999999999999997654211100               00          


Q ss_pred             -ecccccCCC---CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          622 -VGQQLRFPD---SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       622 -~~~~~~~p~---~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                       .......|.   .+..+.+++++|++||..+|++||+    +++++.||||+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t----~~ell~~~~~~~  293 (328)
T cd07856         244 SLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRIS----AAEALAHPYLAP  293 (328)
T ss_pred             hccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCC----HHHHhcCCcccc
Confidence             000011111   1346788999999999999999999    799999999975

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.3e-38  Score=326.06  Aligned_cols=244  Identities=23%  Similarity=0.311  Sum_probs=201.8

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|++.+.||.|+||.||+|...  ++.||+|.+.....    ...++.+|+.+++.++|+||+++++++.+....|
T Consensus         3 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~v~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   76 (256)
T cd05039           3 INSKELKLGATIGKGEFGDVMLGDYR--GQKVAVKCLKDDST----AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLY   76 (256)
T ss_pred             cChhhccceeeeecCCCceEEEEEec--CcEEEEEEeccchh----HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeE
Confidence            34678999999999999999999875  56899999976532    3566888999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+++++|.+++.......+++..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||++...... 
T Consensus        77 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~-  155 (256)
T cd05039          77 IVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQG-  155 (256)
T ss_pred             EEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccccccc-
Confidence            9999999999999887664457899999999999999999999999999999999999999999999999998432000 


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                    ..
T Consensus       156 ------------------------------------------------------------------------------~~  157 (256)
T cd05039         156 ------------------------------------------------------------------------------QD  157 (256)
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          00


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...++..|+|||.+.+..++.++|+|||||++|||++ |..||......... ..+............+.++.+||.+||
T Consensus       158 ~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l  236 (256)
T cd05039         158 SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVV-PHVEKGYRMEAPEGCPPEVYKVMKDCW  236 (256)
T ss_pred             cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHH-HHHhcCCCCCCccCCCHHHHHHHHHHh
Confidence            1124567999999998889999999999999999997 99999765433322 222222232333456889999999999


Q ss_pred             cCCCCCcCCch
Q 004790          647 VKEPQHRLGVK  657 (730)
Q Consensus       647 ~~DP~~R~t~~  657 (730)
                      ..+|++||++.
T Consensus       237 ~~~p~~Rp~~~  247 (256)
T cd05039         237 ELDPAKRPTFK  247 (256)
T ss_pred             ccChhhCcCHH
Confidence            99999999953

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=2.5e-38  Score=330.09  Aligned_cols=253  Identities=33%  Similarity=0.496  Sum_probs=202.6

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeEEee
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      |++.+.||.|+||+||+|+...+++.||||.+.+.....  ......+|+..++.++ ||||+++++++.++...|+|||
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   78 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSW--EECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFE   78 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccch--hHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEe
Confidence            678999999999999999999999999999986543221  1223456889999998 9999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |+ +|+|..++....+..+++..+..++.||+.+|.|||++||+|+||||+||+++.++.++|+|||++......     
T Consensus        79 ~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~-----  152 (283)
T cd07830          79 YM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSR-----  152 (283)
T ss_pred             cC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccCC-----
Confidence            99 889988777654457899999999999999999999999999999999999999999999999988431100     


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                              .......|
T Consensus       153 ------------------------------------------------------------------------~~~~~~~~  160 (283)
T cd07830         153 ------------------------------------------------------------------------PPYTDYVS  160 (283)
T ss_pred             ------------------------------------------------------------------------CCcCCCCC
Confidence                                                                                    00012368


Q ss_pred             CcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec---c----------------cccCC--
Q 004790          572 THEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG---Q----------------QLRFP--  629 (730)
Q Consensus       572 T~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~---~----------------~~~~p--  629 (730)
                      +..|+|||++.+ ..++.++|+||||+++|||++|+.||.+....+.+..+..   .                ...++  
T Consensus       161 ~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (283)
T cd07830         161 TRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQF  240 (283)
T ss_pred             cccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhcccccccccc
Confidence            889999998864 4478999999999999999999999987654333221110   0                00000  


Q ss_pred             -------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          630 -------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       630 -------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                             ..+..+.++++||++||..||++||+    +.|++.||||
T Consensus       241 ~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt----~~ei~~~~~~  283 (283)
T cd07830         241 APTSLHQLIPNASPEAIDLIKDMLRWDPKKRPT----ASQALQHPYF  283 (283)
T ss_pred             ccccHHHHcccCCHHHHHHHHHhcccCcccCCC----HHHHhhCCCC
Confidence                   01123678999999999999999999    7999999998

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=1.1e-38  Score=354.88  Aligned_cols=259  Identities=20%  Similarity=0.285  Sum_probs=207.7

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHF  400 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f  400 (730)
                      .+..++|.+.++||+|+||.||+|++.+     +++.||+|+++....  ......+.+|+++|.++. ||||+++++++
T Consensus        33 ~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~--~~~~~~~~~E~~~l~~l~~H~niv~~~~~~  110 (401)
T cd05107          33 EMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTAR--SSEKQALMSELKIMSHLGPHLNIVNLLGAC  110 (401)
T ss_pred             eecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCC--hhHHHHHHHHHHHHHhcCCCCCeEEEEEEE
Confidence            3555779999999999999999999643     456899999975432  233446789999999997 99999999999


Q ss_pred             cccceeeEEeeecCCCCccccccccCC-----------------------------------------------------
Q 004790          401 ETDRFSCLVMEYCPGGDLHTLRQRQPG-----------------------------------------------------  427 (730)
Q Consensus       401 ~~~~~l~LVmEy~~GGsL~~ll~~~~~-----------------------------------------------------  427 (730)
                      .+...+|+|||||.+|+|.+++.+...                                                     
T Consensus       111 ~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (401)
T cd05107         111 TKGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYV  190 (401)
T ss_pred             ccCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCcc
Confidence            999999999999999999888754311                                                     


Q ss_pred             -------------------------------------------CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccE
Q 004790          428 -------------------------------------------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENV  464 (730)
Q Consensus       428 -------------------------------------------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNI  464 (730)
                                                                 ..+++..++.|+.||+.||+|||+.||+||||||+||
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~Ni  270 (401)
T cd05107         191 PMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNV  270 (401)
T ss_pred             chhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcceE
Confidence                                                       2356677888999999999999999999999999999


Q ss_pred             EecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          465 LVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       465 Ll~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                      |++.++.+||+|||+++.......                                                        
T Consensus       271 Ll~~~~~~kL~DfGla~~~~~~~~--------------------------------------------------------  294 (401)
T cd05107         271 LICEGKLVKICDFGLARDIMRDSN--------------------------------------------------------  294 (401)
T ss_pred             EEeCCCEEEEEecCcceecccccc--------------------------------------------------------
Confidence            999999999999999853210000                                                        


Q ss_pred             ccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeec
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVG  623 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~  623 (730)
                                        ........|++.|+|||++.+..++.++|||||||++|||++ |..||......+.+.+.+.
T Consensus       295 ------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~~~~  356 (401)
T cd05107         295 ------------------YISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIK  356 (401)
T ss_pred             ------------------cccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHH
Confidence                              000112357889999999999989999999999999999998 9999987655555545444


Q ss_pred             ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       624 ~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      ...+.+....++.++.+||.+||..+|++||++    ++|++
T Consensus       357 ~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~----~ell~  394 (401)
T cd05107         357 RGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDF----SQLVH  394 (401)
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCH----HHHHH
Confidence            444444445678999999999999999999995    55543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=3.3e-38  Score=336.81  Aligned_cols=253  Identities=22%  Similarity=0.295  Sum_probs=200.8

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECC-------CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSS-------TRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTH  399 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~-------t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~  399 (730)
                      +..++|.+++.||+|+||.||++++..       ....+|+|++++..  .......+..|+++++.+ +||||++++++
T Consensus         9 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~   86 (314)
T cd05099           9 FPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNA--TDKDLADLISEMELMKLIGKHKNIINLLGV   86 (314)
T ss_pred             ccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCC--ChHHHHHHHHHHHHHHhccCCCCeeeEEEE
Confidence            344689999999999999999998643       34579999987542  224456688899999999 69999999999


Q ss_pred             ccccceeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEE
Q 004790          400 FETDRFSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVL  465 (730)
Q Consensus       400 f~~~~~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNIL  465 (730)
                      +..+..+|+||||+++|+|..++....              ...+++..+..++.||+.||.|||++||+||||||+|||
T Consensus        87 ~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nil  166 (314)
T cd05099          87 CTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVL  166 (314)
T ss_pred             EccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEE
Confidence            999999999999999999998876532              245888899999999999999999999999999999999


Q ss_pred             ecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCc
Q 004790          466 VRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRS  545 (730)
Q Consensus       466 l~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (730)
                      ++.++.+||+|||+++.......                                                         
T Consensus       167 l~~~~~~kL~Dfg~~~~~~~~~~---------------------------------------------------------  189 (314)
T cd05099         167 VTEDNVMKIADFGLARGVHDIDY---------------------------------------------------------  189 (314)
T ss_pred             EcCCCcEEEcccccccccccccc---------------------------------------------------------
Confidence            99999999999999853210000                                                         


Q ss_pred             cCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecc
Q 004790          546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQ  624 (730)
Q Consensus       546 ~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~  624 (730)
                                       ........++..|+|||++.+..++.++|||||||++|||++ |..||.+......+..+. .
T Consensus       190 -----------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~-~  251 (314)
T cd05099         190 -----------------YKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELFKLLR-E  251 (314)
T ss_pred             -----------------ccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-c
Confidence                             000001134567999999999889999999999999999998 999998765443333332 2


Q ss_pred             cccCCCCCCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       625 ~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      .........++.++++||.+||..||++||++.
T Consensus       252 ~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  284 (314)
T cd05099         252 GHRMDKPSNCTHELYMLMRECWHAVPTQRPTFK  284 (314)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHH
Confidence            222233345688999999999999999999953

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=2.4e-38  Score=331.98  Aligned_cols=253  Identities=17%  Similarity=0.225  Sum_probs=199.6

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCe----EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRC----YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~----~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      +...+|++++.||+|+||+||+|.+..++.    .+++|.+...  ........+..|+.+++.++||||+++++++.. 
T Consensus         4 ~~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~-   80 (279)
T cd05111           4 LKETELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDR--SGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-   80 (279)
T ss_pred             CCHhhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccc--cchHHHHHHHHHHHHHhcCCCCCcceEEEEECC-
Confidence            456789999999999999999999977766    3677776432  122344567788889999999999999998764 


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ...+++|||+++|+|.+++... ...+++..++.++.||+.||.|||++|++||||||+|||++.++.+||+|||+++..
T Consensus        81 ~~~~~i~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~  159 (279)
T cd05111          81 ASLQLVTQLSPLGSLLDHVRQH-RDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLL  159 (279)
T ss_pred             CccEEEEEeCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceec
Confidence            4578999999999999988654 246899999999999999999999999999999999999999999999999998542


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ....                                                                          ..
T Consensus       160 ~~~~--------------------------------------------------------------------------~~  165 (279)
T cd05111         160 YPDD--------------------------------------------------------------------------KK  165 (279)
T ss_pred             cCCC--------------------------------------------------------------------------cc
Confidence            1000                                                                          00


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      .......|+..|+|||++.+..++.++|||||||++|||++ |..||.+..... +..++......+....++.++.++|
T Consensus       166 ~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li  244 (279)
T cd05111         166 YFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHE-VPDLLEKGERLAQPQICTIDVYMVM  244 (279)
T ss_pred             cccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH-HHHHHHCCCcCCCCCCCCHHHHHHH
Confidence            00112356778999999999899999999999999999998 999998764332 2222332223333345678899999


Q ss_pred             HhhhcCCCCCcCCchhc
Q 004790          643 RGLLVKEPQHRLGVKRG  659 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~  659 (730)
                      .+||..||++||++.+.
T Consensus       245 ~~c~~~~p~~Rps~~el  261 (279)
T cd05111         245 VKCWMIDENVRPTFKEL  261 (279)
T ss_pred             HHHcCCCcccCcCHHHH
Confidence            99999999999996433

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=1.1e-38  Score=343.93  Aligned_cols=264  Identities=30%  Similarity=0.451  Sum_probs=207.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccc--ccee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFET--DRFS  406 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~--~~~l  406 (730)
                      .++|++.+.||+|+||.||+|.+..+++.+|||.+.+... .......+.+|+.+++.+ +||||++++++|..  ...+
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~-~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~   84 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFR-NATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI   84 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccC-cchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence            4679999999999999999999999999999998865322 223345677899999999 99999999998864  4478


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+. ++|..++...   .+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++......
T Consensus        85 ~lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~  160 (337)
T cd07852          85 YLVFEYME-TDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSEL  160 (337)
T ss_pred             EEEecccc-cCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhccccc
Confidence            99999996 5888877653   6888899999999999999999999999999999999999999999999998542100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ...                        +                                               .....
T Consensus       161 ~~~------------------------~-----------------------------------------------~~~~~  169 (337)
T cd07852         161 EEN------------------------P-----------------------------------------------ENPVL  169 (337)
T ss_pred             ccc------------------------c-----------------------------------------------cCcch
Confidence            000                        0                                               00011


Q ss_pred             cccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc---------------------
Q 004790          567 MSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ---------------------  624 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~---------------------  624 (730)
                      ..++||+.|+|||++.+ ..++.++|+|||||++|+|++|+.||.+......+..+...                     
T Consensus       170 ~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (337)
T cd07852         170 TDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATML  249 (337)
T ss_pred             hcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhh
Confidence            23578999999998865 45788999999999999999999999875543322211100                     


Q ss_pred             ------ccc-C-CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          625 ------QLR-F-PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       625 ------~~~-~-p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                            ... + ...+..+.++.+||.+||..||++||+    +.++++||||+.++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps----~~~il~~~~~~~~~  302 (337)
T cd07852         250 DSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLT----AEEALEHPYVAQFH  302 (337)
T ss_pred             hhcccccccchhhhccCCCHHHHHHHHHhccCCcccccC----HHHHhhChhhhhhc
Confidence                  000 0 011236788999999999999999999    68999999999753

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.7e-38  Score=335.52  Aligned_cols=251  Identities=23%  Similarity=0.304  Sum_probs=198.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCC--------------CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSST--------------RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPT  395 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t--------------~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~  395 (730)
                      ..+|++.++||+|+||.||++++..+              ...||+|+++...  .......+.+|+++|+.++||||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~ei~~l~~l~h~~i~~   81 (295)
T cd05097           4 RQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADV--TKTARNDFLKEIKIMSRLKNPNIIR   81 (295)
T ss_pred             hHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCcCe
Confidence            35899999999999999999987543              2358999987542  2234456889999999999999999


Q ss_pred             ccccccccceeeEEeeecCCCCccccccccC----------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEE
Q 004790          396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQP----------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVL  465 (730)
Q Consensus       396 L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~----------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNIL  465 (730)
                      +++++..+...|+||||+++++|.+++....          ...+++..+..++.||+.||.|||++|++||||||+|||
T Consensus        82 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil  161 (295)
T cd05097          82 LLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCL  161 (295)
T ss_pred             EEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEE
Confidence            9999999999999999999999988775421          123678888999999999999999999999999999999


Q ss_pred             ecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCc
Q 004790          466 VRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRS  545 (730)
Q Consensus       466 l~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (730)
                      ++.++.+||+|||++.......                                                          
T Consensus       162 l~~~~~~kl~dfg~~~~~~~~~----------------------------------------------------------  183 (295)
T cd05097         162 VGNHYTIKIADFGMSRNLYSGD----------------------------------------------------------  183 (295)
T ss_pred             EcCCCcEEecccccccccccCc----------------------------------------------------------
Confidence            9999999999999984321000                                                          


Q ss_pred             cCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh--CCCCCCCCCCccceeeee-
Q 004790          546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY--GKTPFKGSGNRATLFNVV-  622 (730)
Q Consensus       546 ~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt--G~~PF~g~~~~~~l~~i~-  622 (730)
                                      .........++..|+|||++.+..++.++|+|||||++|+|++  |..||........+..+. 
T Consensus       184 ----------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~  247 (295)
T cd05097         184 ----------------YYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGE  247 (295)
T ss_pred             ----------------ceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHH
Confidence                            0000012356788999999999899999999999999999987  778887755433322211 


Q ss_pred             -----cccccCCCCCCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          623 -----GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       623 -----~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                           .........+..+..+.+||.+||..||++||++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~  286 (295)
T cd05097         248 FFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTF  286 (295)
T ss_pred             hhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCcCH
Confidence                 1112222334567899999999999999999995

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=2.9e-38  Score=332.49  Aligned_cols=249  Identities=23%  Similarity=0.339  Sum_probs=200.3

Q ss_pred             CeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      +|++.+.||+|+||.||+|++..     ....+|+|.+.+...  ......+.+|+.+|+.++||||+++++.+..+...
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   78 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENAS--SSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPL   78 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCC--HHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCc
Confidence            48899999999999999998753     235799998865432  23446788999999999999999999999999999


Q ss_pred             eEEeeecCCCCcccccccc----------------------CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccE
Q 004790          407 CLVMEYCPGGDLHTLRQRQ----------------------PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENV  464 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~----------------------~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNI  464 (730)
                      |+||||+.+++|..++...                      ....+++..+..++.||+.||+|||++||+||||||+||
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~ni  158 (290)
T cd05045          79 LLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNV  158 (290)
T ss_pred             EEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheE
Confidence            9999999999998876532                      123578889999999999999999999999999999999


Q ss_pred             EecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          465 LVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       465 Ll~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                      |++.++.+||+|||++.........                                                       
T Consensus       159 ll~~~~~~kl~dfg~~~~~~~~~~~-------------------------------------------------------  183 (290)
T cd05045         159 LVAEGRKMKISDFGLSRDVYEEDSY-------------------------------------------------------  183 (290)
T ss_pred             EEcCCCcEEeccccccccccCccch-------------------------------------------------------
Confidence            9999999999999998532100000                                                       


Q ss_pred             ccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeec
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVG  623 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~  623 (730)
                                         .......++..|+|||++.+..++.++|||||||++|||++ |..||.+..... +.+.+.
T Consensus       184 -------------------~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~-~~~~~~  243 (290)
T cd05045         184 -------------------VKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPER-LFNLLK  243 (290)
T ss_pred             -------------------hcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHHH-HHHHHh
Confidence                               00011245678999999999999999999999999999998 999998754433 333333


Q ss_pred             ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       624 ~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      .....+.....+.++++||.+||..||++||++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~  277 (290)
T cd05045         244 TGYRMERPENCSEEMYNLMLTCWKQEPDKRPTFA  277 (290)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHH
Confidence            3344444456788999999999999999999954

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=2.5e-38  Score=331.94  Aligned_cols=255  Identities=24%  Similarity=0.300  Sum_probs=199.2

Q ss_pred             CCeEEEeEEccCCcEEEEEEEE----CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc--c
Q 004790          331 SHFRLLKRLGCGDIGSVYLSEL----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD--R  404 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~----~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~--~  404 (730)
                      ..|++++.||+|+||.||++++    ..++..||+|.++...  .......+.+|+++|+.++||||+++++++...  .
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (284)
T cd05079           4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES--GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGN   81 (284)
T ss_pred             hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccc--cHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCC
Confidence            4589999999999999999985    4568899999986542  234456789999999999999999999988764  6


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      ..|+||||++|++|..++.+.. ..+++..+..++.||+.||.|||++||+||||||+|||++.++.++|+|||++....
T Consensus        82 ~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~  160 (284)
T cd05079          82 GIKLIMEFLPSGSLKEYLPRNK-NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIE  160 (284)
T ss_pred             ceEEEEEccCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCccccccc
Confidence            7899999999999999876542 358899999999999999999999999999999999999999999999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      .....                                                                         ..
T Consensus       161 ~~~~~-------------------------------------------------------------------------~~  167 (284)
T cd05079         161 TDKEY-------------------------------------------------------------------------YT  167 (284)
T ss_pred             cCccc-------------------------------------------------------------------------ee
Confidence            00000                                                                         00


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc--------------cceeeeecccccCCC
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR--------------ATLFNVVGQQLRFPD  630 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~--------------~~l~~i~~~~~~~p~  630 (730)
                      ......|+..|+|||++.+..++.++|||||||++|||++++.|+......              ......+......+.
T Consensus       168 ~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (284)
T cd05079         168 VKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPR  247 (284)
T ss_pred             ecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCccCCC
Confidence            001235778899999999888999999999999999999987765432100              000011112223344


Q ss_pred             CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       631 ~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      ...++..+.+||.+||..||++||+    +.++++
T Consensus       248 ~~~~~~~~~~li~~~l~~~p~~Rpt----~~~il~  278 (284)
T cd05079         248 PPNCPEEVYQLMRKCWEFQPSKRTT----FQNLIE  278 (284)
T ss_pred             CCCCCHHHHHHHHHHccCCcccCcC----HHHHHH
Confidence            4567899999999999999999999    466654

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=2.5e-38  Score=332.18  Aligned_cols=252  Identities=21%  Similarity=0.315  Sum_probs=201.4

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      ..++|++++.||+|+||.||+|.+..     ++..||+|++.....  ......+.+|+.+++.++||||+++++++.++
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~   80 (288)
T cd05050           3 PRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS--ADMQADFQREAALMAEFDHPNIVKLLGVCAVG   80 (288)
T ss_pred             ChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcC--HHHHHHHHHHHHHHHhcCCCchheEEEEEcCC
Confidence            34679999999999999999999753     677899999875432  23345688899999999999999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccC--------------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCcc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQP--------------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPEN  463 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~--------------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeN  463 (730)
                      ..+|+||||+++|+|..++....                    ...+++.++..++.||+.||+|||++|++||||||+|
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~n  160 (288)
T cd05050          81 KPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRN  160 (288)
T ss_pred             CccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhh
Confidence            99999999999999988876421                    1247788889999999999999999999999999999


Q ss_pred             EEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCC
Q 004790          464 VLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKP  543 (730)
Q Consensus       464 ILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (730)
                      ||++.++.++|+|||++..+.....                         |                             
T Consensus       161 il~~~~~~~~l~dfg~~~~~~~~~~-------------------------~-----------------------------  186 (288)
T cd05050         161 CLVGENMVVKIADFGLSRNIYSADY-------------------------Y-----------------------------  186 (288)
T ss_pred             eEecCCCceEECccccceecccCcc-------------------------c-----------------------------
Confidence            9999999999999998743210000                         0                             


Q ss_pred             CccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeee
Q 004790          544 RSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVV  622 (730)
Q Consensus       544 ~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~  622 (730)
                                          .......++..|+|||++.+..++.++|+|||||++|||++ |..||.+....+.+..+.
T Consensus       187 --------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~~~~~~~  246 (288)
T cd05050         187 --------------------KASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYYVR  246 (288)
T ss_pred             --------------------cccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh
Confidence                                00001134567999999999999999999999999999997 889998765544443333


Q ss_pred             cccccCCCCCCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       623 ~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      .... .+.....+.++.+||.+||..||++||++.
T Consensus       247 ~~~~-~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~  280 (288)
T cd05050         247 DGNV-LSCPDNCPLELYNLMRLCWSKLPSDRPSFA  280 (288)
T ss_pred             cCCC-CCCCCCCCHHHHHHHHHHcccCcccCCCHH
Confidence            2222 222345688999999999999999999953

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=2e-38  Score=329.71  Aligned_cols=254  Identities=31%  Similarity=0.482  Sum_probs=205.9

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeee
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEY  412 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy  412 (730)
                      |++.+.||+|+||.||+|++..+++.||+|++.+.. ........+..|+.+++.++|+||+++++++.+...+|+||||
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   79 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDN-EEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEY   79 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEecccc-ccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecC
Confidence            678899999999999999999999999999997654 2223345677899999999999999999999999999999999


Q ss_pred             cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccccc
Q 004790          413 CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT  492 (730)
Q Consensus       413 ~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~  492 (730)
                      ++ ++|..++.+.. ..+++..++.++.||+.||.|||++||+||||+|+||+++.++.+||+|||++.......     
T Consensus        80 ~~-~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~-----  152 (282)
T cd07829          80 CD-MDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPL-----  152 (282)
T ss_pred             cC-cCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCCc-----
Confidence            96 58988887643 468999999999999999999999999999999999999999999999999874321000     


Q ss_pred             CCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccC
Q 004790          493 SSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT  572 (730)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT  572 (730)
                                                                                             .......++
T Consensus       153 -----------------------------------------------------------------------~~~~~~~~~  161 (282)
T cd07829         153 -----------------------------------------------------------------------RTYTHEVVT  161 (282)
T ss_pred             -----------------------------------------------------------------------cccCccccC
Confidence                                                                                   000112467


Q ss_pred             cccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec------------------ccccCCC---
Q 004790          573 HEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG------------------QQLRFPD---  630 (730)
Q Consensus       573 ~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~------------------~~~~~p~---  630 (730)
                      ..|+|||.+.+. .++.++|+|||||++|||++|+.||.+......+.++..                  ....++.   
T Consensus       162 ~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (282)
T cd07829         162 LWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPP  241 (282)
T ss_pred             cCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCc
Confidence            889999999877 789999999999999999999999987653322221110                  0000110   


Q ss_pred             ------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          631 ------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       631 ------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                            .+..+..+.++|++||..||.+||+    +.+++.||||
T Consensus       242 ~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~----~~~~l~~p~~  282 (282)
T cd07829         242 KDLEKVLPRLDPEGIDLLSKMLQYNPAKRIS----AKEALKHPYF  282 (282)
T ss_pred             cchHHhcccccHHHHHHHHHhhccCcccCCC----HHHHhhCcCC
Confidence                  1234778999999999999999999    7999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=2.3e-38  Score=324.72  Aligned_cols=233  Identities=32%  Similarity=0.436  Sum_probs=190.7

Q ss_pred             CCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCcccc
Q 004790          342 GDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTL  421 (730)
Q Consensus       342 G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL~~l  421 (730)
                      |.||+||++++..+++.||+|++.+...        ..+|...+....||||+++++++.+....|+||||++||+|.++
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~   75 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSE--------YSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSH   75 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhh--------hhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHH
Confidence            8999999999999999999999976532        22344455556799999999999999999999999999999988


Q ss_pred             ccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCC
Q 004790          422 RQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSR  501 (730)
Q Consensus       422 l~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~  501 (730)
                      +.+.  ..+++..+..++.||+.||+|||++||+||||||+||+++.++.++|+|||++.....                
T Consensus        76 l~~~--~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~----------------  137 (237)
T cd05576          76 ISKF--LNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVED----------------  137 (237)
T ss_pred             HHHh--cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhcccc----------------
Confidence            7654  4589999999999999999999999999999999999999999999999998732100                


Q ss_pred             CCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhh
Q 004790          502 RGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEII  581 (730)
Q Consensus       502 ~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl  581 (730)
                                                                                     ......++..|+|||.+
T Consensus       138 ---------------------------------------------------------------~~~~~~~~~~y~aPE~~  154 (237)
T cd05576         138 ---------------------------------------------------------------SCDGEAVENMYCAPEVG  154 (237)
T ss_pred             ---------------------------------------------------------------ccccCCcCccccCCccc
Confidence                                                                           00012456779999999


Q ss_pred             ccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCch-hcH
Q 004790          582 KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK-RGA  660 (730)
Q Consensus       582 ~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~-~~a  660 (730)
                      .+..++.++|+||+||++|||++|+.||......  ...  ...+.+|  ..++..+++||.+||..||++|++.. ..+
T Consensus       155 ~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~--~~~--~~~~~~~--~~~~~~~~~li~~~l~~dp~~R~~~~~~~~  228 (237)
T cd05576         155 GISEETEACDWWSLGAILFELLTGKTLVECHPSG--INT--HTTLNIP--EWVSEEARSLLQQLLQFNPTERLGAGVAGV  228 (237)
T ss_pred             CCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh--ccc--ccccCCc--ccCCHHHHHHHHHHccCCHHHhcCCCccch
Confidence            8888999999999999999999999998643211  000  0112233  35688999999999999999999952 347


Q ss_pred             HHHHcCCCC
Q 004790          661 TEIKQHPFF  669 (730)
Q Consensus       661 ~elL~HPfF  669 (730)
                      +++++||||
T Consensus       229 ~~~~~h~~~  237 (237)
T cd05576         229 EDIKSHPFF  237 (237)
T ss_pred             HHHHcCCCC
Confidence            999999998

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-38  Score=322.22  Aligned_cols=260  Identities=26%  Similarity=0.390  Sum_probs=214.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      ...++.+++..||.|+.|+||+++.+.++...|||.|.+...  .+..+++...++++... ++|+||+.|++|.++...
T Consensus        89 ~dindl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~N--kee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV  166 (391)
T KOG0983|consen   89 ADINDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGN--KEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDV  166 (391)
T ss_pred             cChHHhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCC--HHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchH
Confidence            345677888999999999999999999999999999988753  34556777777776555 699999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhH-hcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH-MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH-~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      ++.||.| +.-+..++.+. .+.++|..+-.+..-++.||.||. .+||||||+||+|||+|+.|.|||||||++-++..
T Consensus       167 ~IcMelM-s~C~ekLlkri-k~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvd  244 (391)
T KOG0983|consen  167 FICMELM-STCAEKLLKRI-KGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVD  244 (391)
T ss_pred             HHHHHHH-HHHHHHHHHHh-cCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceeec
Confidence            9999998 55556666554 357999999999999999999997 57899999999999999999999999999965421


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      +..                                                                             
T Consensus       245 SkA-----------------------------------------------------------------------------  247 (391)
T KOG0983|consen  245 SKA-----------------------------------------------------------------------------  247 (391)
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            110                                                                             


Q ss_pred             ccccccCcccCChhhhccC---CCCCcceeechhHHHHHHhhCCCCCCCCCC-ccceeeeeccc-ccCCCCCCCChhHHH
Q 004790          566 SMSFVGTHEYLAPEIIKGE---GHGSAVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNVVGQQ-LRFPDSPATSYASRD  640 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~---~~~~~sDIWSLG~iLyELltG~~PF~g~~~-~~~l~~i~~~~-~~~p~~~~~s~~~~d  640 (730)
                      .....|-+.|||||.|.-.   .|+.++|+||||++|+||.||+.||.+.+. .+++-.|++.. ..+|....+|..+++
T Consensus       248 htrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~ePP~L~~~~gFSp~F~~  327 (391)
T KOG0983|consen  248 HTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEEPPLLPGHMGFSPDFQS  327 (391)
T ss_pred             cccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcCCCCCCcccCcCHHHHH
Confidence            0112688999999999654   589999999999999999999999998653 45555555533 334455568999999


Q ss_pred             HHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          641 LIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      |+..||.+|+.+||.    ..+||+|||+...
T Consensus       328 fv~~CL~kd~r~RP~----Y~~Ll~h~Fi~~y  355 (391)
T KOG0983|consen  328 FVKDCLTKDHRKRPK----YNKLLEHPFIKRY  355 (391)
T ss_pred             HHHHHhhcCcccCcc----hHHHhcCcceeec
Confidence            999999999999999    6899999999864

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=1.1e-39  Score=336.86  Aligned_cols=264  Identities=27%  Similarity=0.413  Sum_probs=204.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCC----eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc-cc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTR----CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET-DR  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~----~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~-~~  404 (730)
                      +..|++++.||+|.||.||+|..+.++    +.||||.++...-.. ..-..+.||+.+++.++||||+.|..+|-. +.
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~t-GiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~  101 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGT-GISMSACREIALLRELKHPNVISLVKVFLSHDK  101 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCC-CcCHHHHHHHHHHHHhcCCcchhHHHHHhccCc
Confidence            467999999999999999999665543    368999886542111 122346789999999999999999999977 89


Q ss_pred             eeeEEeeecCCCCcccccccc---CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC----CceEEecc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQ---PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD----GHIMLSDF  477 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~---~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~----g~vKL~DF  477 (730)
                      .++|++||. .-||..+++.+   ..+.++...++.++.||+.|+.|||++-|+||||||.|||+..+    |.|||+||
T Consensus       102 ~v~l~fdYA-EhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDl  180 (438)
T KOG0666|consen  102 KVWLLFDYA-EHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADL  180 (438)
T ss_pred             eEEEEehhh-hhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecc
Confidence            999999999 56787766543   23578999999999999999999999999999999999999887    89999999


Q ss_pred             cccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccc
Q 004790          478 DLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPEL  557 (730)
Q Consensus       478 GlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (730)
                      ||++.+...-.                                                                     
T Consensus       181 GlaR~~~~plk---------------------------------------------------------------------  191 (438)
T KOG0666|consen  181 GLARLFNNPLK---------------------------------------------------------------------  191 (438)
T ss_pred             cHHHHhhcccc---------------------------------------------------------------------
Confidence            99976421000                                                                     


Q ss_pred             ccccccccccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCc---------cce---eeeecc
Q 004790          558 VAEPTAARSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNR---------ATL---FNVVGQ  624 (730)
Q Consensus       558 ~~e~~~~~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~---------~~l---~~i~~~  624 (730)
                          ..+.....|-|.+|+|||+|.|.. |+.++|+|++|||+.||++-.+.|.+....         +++   +++++.
T Consensus       192 ----pl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~  267 (438)
T KOG0666|consen  192 ----PLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGT  267 (438)
T ss_pred             ----ccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCC
Confidence                000112357899999999999987 689999999999999999999999875321         112   222211


Q ss_pred             c--c------cCCCC------------------------CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          625 Q--L------RFPDS------------------------PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       625 ~--~------~~p~~------------------------~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      .  .      .+|+.                        ..-+..+-+|+.+||.+||-+|++    ++++++|+||..-
T Consensus       268 Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIt----a~qAleh~yF~~d  343 (438)
T KOG0666|consen  268 PTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRIT----AEQALEHPYFTED  343 (438)
T ss_pred             CccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhcc----HHHHhcccccccC
Confidence            0  0      11111                        112334669999999999999999    7999999999863

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=5.9e-38  Score=328.33  Aligned_cols=254  Identities=24%  Similarity=0.348  Sum_probs=198.1

Q ss_pred             CCeEEEeEEccCCcEEEEEEEE----CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc--ccc
Q 004790          331 SHFRLLKRLGCGDIGSVYLSEL----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE--TDR  404 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~----~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~--~~~  404 (730)
                      .+|++++.||+|+||+||++..    ..++..||+|.+....   ......+.+|+++|+.++||||+++++++.  +..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   80 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST---AEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR   80 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCC
Confidence            5799999999999999999984    4568899999986543   244567889999999999999999998764  345


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|+||||+++++|..++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++++||+|||++....
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~  159 (284)
T cd05081          81 NLRLVMEYLPYGSLRDYLQKHR-ERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLP  159 (284)
T ss_pred             ceEEEEEecCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCccccccc
Confidence            7899999999999999886542 458999999999999999999999999999999999999999999999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ......                                                                         .
T Consensus       160 ~~~~~~-------------------------------------------------------------------------~  166 (284)
T cd05081         160 QDKEYY-------------------------------------------------------------------------K  166 (284)
T ss_pred             CCCcce-------------------------------------------------------------------------e
Confidence            100000                                                                         0


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc---------------ceeeeecccccCC
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA---------------TLFNVVGQQLRFP  629 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~---------------~l~~i~~~~~~~p  629 (730)
                      ......++..|+|||++.+..++.++|||||||++|||++|..++.......               .+.+++.....++
T Consensus       167 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (284)
T cd05081         167 VREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLP  246 (284)
T ss_pred             ecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCC
Confidence            0001124456999999999899999999999999999999887765432110               0011122233444


Q ss_pred             CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          630 DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       630 ~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      ....++.++.+||.+||..+|++||++    .++++
T Consensus       247 ~~~~~~~~~~~li~~cl~~~p~~Rpt~----~ei~~  278 (284)
T cd05081         247 APPGCPAEIYAIMKECWNNDPSQRPSF----SELAL  278 (284)
T ss_pred             CCCCCCHHHHHHHHHHccCChhhCCCH----HHHHH
Confidence            456678899999999999999999994    55543

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=3.2e-38  Score=325.03  Aligned_cols=240  Identities=23%  Similarity=0.308  Sum_probs=196.9

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ..++|++.+.||+|+||.||++..  +++.||+|.++...     ....+.+|+.+++.++||||+++++++..+. .|+
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~--~~~~~~iK~~~~~~-----~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~-~~~   75 (254)
T cd05083           4 NLQKLTLGEIIGEGEFGAVLQGEY--TGQKVAVKNIKCDV-----TAQAFLEETAVMTKLHHKNLVRLLGVILHNG-LYI   75 (254)
T ss_pred             cHHHceeeeeeccCCCCceEeccc--CCCceEEEeecCcc-----hHHHHHHHHHHHHhCCCCCcCeEEEEEcCCC-cEE
Confidence            457899999999999999999874  56789999986532     2245788999999999999999999987654 799


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||+.+++|..++.......+++..+..++.||+.||.|||++|++||||||+|||++.++.+||+|||++......  
T Consensus        76 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~--  153 (254)
T cd05083          76 VMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG--  153 (254)
T ss_pred             EEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceecccc--
Confidence            999999999999887655556899999999999999999999999999999999999999999999999988431000  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                   ...
T Consensus       154 -----------------------------------------------------------------------------~~~  156 (254)
T cd05083         154 -----------------------------------------------------------------------------VDN  156 (254)
T ss_pred             -----------------------------------------------------------------------------CCC
Confidence                                                                                         001


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      ...+..|+|||.+.+..++.++|+|||||++|||++ |+.||.+.........+ ......+.....+..+.+||++||.
T Consensus       157 ~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~  235 (254)
T cd05083         157 SKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECV-EKGYRMEPPEGCPADVYVLMTSCWE  235 (254)
T ss_pred             CCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHH-hCCCCCCCCCcCCHHHHHHHHHHcC
Confidence            123567999999998889999999999999999997 99999876544333222 2233333345678899999999999


Q ss_pred             CCCCCcCCc
Q 004790          648 KEPQHRLGV  656 (730)
Q Consensus       648 ~DP~~R~t~  656 (730)
                      .+|++||++
T Consensus       236 ~~p~~Rp~~  244 (254)
T cd05083         236 TEPKKRPSF  244 (254)
T ss_pred             CChhhCcCH
Confidence            999999995

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=4.2e-38  Score=339.17  Aligned_cols=259  Identities=21%  Similarity=0.301  Sum_probs=204.6

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCC-------CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSST-------RCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYT  398 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t-------~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~  398 (730)
                      .+...+|++++.||+|+||.||+|++...       ...||+|+++...  .......+.+|+++++.+ +||||+++++
T Consensus         8 ~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~iv~~~~   85 (334)
T cd05100           8 ELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDA--TDKDLSDLVSEMEMMKMIGKHKNIINLLG   85 (334)
T ss_pred             ccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEccccc--CHHHHHHHHHHHHHHHhhcCCCCeeeeeE
Confidence            35556899999999999999999986432       2368999886532  224456788999999999 8999999999


Q ss_pred             cccccceeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccE
Q 004790          399 HFETDRFSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENV  464 (730)
Q Consensus       399 ~f~~~~~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNI  464 (730)
                      +|..+..+|+||||+++|+|..++.+..              ...++..++..++.||+.||.|||++||+||||||+||
T Consensus        86 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Ni  165 (334)
T cd05100          86 ACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNV  165 (334)
T ss_pred             EEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceE
Confidence            9999999999999999999998876531              23477788889999999999999999999999999999


Q ss_pred             EecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          465 LVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       465 Ll~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                      |++.++.+||+|||+++.......                                                        
T Consensus       166 ll~~~~~~kL~Dfg~~~~~~~~~~--------------------------------------------------------  189 (334)
T cd05100         166 LVTEDNVMKIADFGLARDVHNIDY--------------------------------------------------------  189 (334)
T ss_pred             EEcCCCcEEECCcccceecccccc--------------------------------------------------------
Confidence            999999999999999854210000                                                        


Q ss_pred             ccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeec
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVG  623 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~  623 (730)
                                        ........++..|+|||++.+..++.++|||||||++|||++ |..||.+....+.+..+ .
T Consensus       190 ------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~-~  250 (334)
T cd05100         190 ------------------YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLL-K  250 (334)
T ss_pred             ------------------cccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH-H
Confidence                              000001234568999999999999999999999999999998 89999876544433333 2


Q ss_pred             ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       624 ~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      .....+.....+.++.+||.+||..+|.+||++    .+++++
T Consensus       251 ~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~----~ell~~  289 (334)
T cd05100         251 EGHRMDKPANCTHELYMIMRECWHAVPSQRPTF----KQLVED  289 (334)
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHcccChhhCcCH----HHHHHH
Confidence            333333344678899999999999999999994    555543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=6.8e-38  Score=324.74  Aligned_cols=245  Identities=22%  Similarity=0.301  Sum_probs=194.0

Q ss_pred             EEccCCcEEEEEEEEC--CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCC
Q 004790          338 RLGCGDIGSVYLSELS--STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       338 ~LG~G~fG~Vyla~~~--~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      .||+|+||.||+|.+.  .++..||+|++....  .......+.+|+.+|+.++||||++++++++. ...|+||||+++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~--~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~~~lv~e~~~~   78 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNEN--EKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEMASG   78 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEccccc--ChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-CCeEEEEEeCCC
Confidence            4899999999999775  456679999986542  23445678899999999999999999998864 468999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      ++|.+++... ...+++..+..++.||+.||.|||++|++||||||+|||++.++.+||+|||++..........     
T Consensus        79 ~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~-----  152 (257)
T cd05115          79 GPLNKFLSGK-KDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYY-----  152 (257)
T ss_pred             CCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCccce-----
Confidence            9999887643 2468999999999999999999999999999999999999999999999999984321000000     


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                          .......+++.|
T Consensus       153 --------------------------------------------------------------------~~~~~~~~~~~y  164 (257)
T cd05115         153 --------------------------------------------------------------------KARSAGKWPLKW  164 (257)
T ss_pred             --------------------------------------------------------------------eccCCCCCCccc
Confidence                                                                                000011346789


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcC
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRL  654 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~  654 (730)
                      +|||++.+..++.++|+|||||++|||++ |..||.+.........+ ......+.....+.++.+||.+||..||++||
T Consensus       165 ~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp  243 (257)
T cd05115         165 YAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFI-EQGKRLDCPAECPPEMYALMKDCWIYKWEDRP  243 (257)
T ss_pred             CCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHcCCChhhCc
Confidence            99999998889999999999999999996 99999876554433322 22233334456789999999999999999999


Q ss_pred             CchhcH
Q 004790          655 GVKRGA  660 (730)
Q Consensus       655 t~~~~a  660 (730)
                      ++...+
T Consensus       244 ~~~~i~  249 (257)
T cd05115         244 NFAKVE  249 (257)
T ss_pred             CHHHHH
Confidence            964433

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=5.9e-38  Score=321.01  Aligned_cols=251  Identities=26%  Similarity=0.379  Sum_probs=204.8

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCC----eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTR----CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~----~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      |++++.||.|+||.||++++...+    ..||+|++......  .....+..|+.+|+.++|+||+++++++.+.+..|+
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   78 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADE--QQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMI   78 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCCh--HHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEE
Confidence            457789999999999999998766    88999999655322  245678899999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      +|||+++++|..++.......+++..+..++.||+.||.|||++|++||||||+||+++.+++++|+|||++........
T Consensus        79 i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~  158 (258)
T smart00219       79 VMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDY  158 (258)
T ss_pred             EEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceecccccc
Confidence            99999999999988765333389999999999999999999999999999999999999999999999999854210000


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                 .....
T Consensus       159 ---------------------------------------------------------------------------~~~~~  163 (258)
T smart00219      159 ---------------------------------------------------------------------------YKKKG  163 (258)
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00000


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      ..+++.|+|||.+.+..++.++|+|||||++|+|++ |+.||........+..+.... ..+.....+.++.++|.+||.
T Consensus       164 ~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~  242 (258)
T smart00219      164 GKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLKKGY-RLPKPENCPPEIYKLMLQCWA  242 (258)
T ss_pred             CCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCC-CCCCCCcCCHHHHHHHHHHCc
Confidence            126788999999988889999999999999999998 899998755444443333222 233334578999999999999


Q ss_pred             CCCCCcCCchhcHHHHHc
Q 004790          648 KEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~  665 (730)
                      .||++||+    +.++++
T Consensus       243 ~~p~~Rpt----~~~ll~  256 (258)
T smart00219      243 EDPEDRPT----FSELVE  256 (258)
T ss_pred             CChhhCcC----HHHHHh
Confidence            99999999    677764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-39  Score=355.70  Aligned_cols=261  Identities=24%  Similarity=0.381  Sum_probs=224.0

Q ss_pred             hhhcCCccccCCeEEEeEEccCCcEEEEEEEECCCCe---E-EEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccc
Q 004790          321 IRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRC---Y-FAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTL  396 (730)
Q Consensus       321 ~~~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~---~-vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L  396 (730)
                      +....+++..++..+.++||+|+||.||+|+.+..+.   . ||+|.++......+.++..+.+|+++++.++|||||+|
T Consensus       147 I~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~  226 (474)
T KOG0194|consen  147 IPRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRF  226 (474)
T ss_pred             ccccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            4455677888999999999999999999998865422   3 89999876555567888899999999999999999999


Q ss_pred             cccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEec
Q 004790          397 YTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSD  476 (730)
Q Consensus       397 ~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~D  476 (730)
                      |++...+.-+|||||+|.||+|.+++++.++ .++..+...++.+.+.||+|||++++|||||-..|+|+..++.+||+|
T Consensus       227 yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~-~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISD  305 (474)
T KOG0194|consen  227 YGVAVLEEPLMLVMELCNGGSLDDYLKKNKK-SLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISD  305 (474)
T ss_pred             EEEEcCCCccEEEEEecCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCc
Confidence            9999999999999999999999999998743 689999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcc
Q 004790          477 FDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPE  556 (730)
Q Consensus       477 FGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (730)
                      |||++...                      .+....                           .                
T Consensus       306 FGLs~~~~----------------------~~~~~~---------------------------~----------------  320 (474)
T KOG0194|consen  306 FGLSRAGS----------------------QYVMKK---------------------------F----------------  320 (474)
T ss_pred             cccccCCc----------------------ceeecc---------------------------c----------------
Confidence            99985321                      000000                           0                


Q ss_pred             cccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCC
Q 004790          557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATS  635 (730)
Q Consensus       557 ~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s  635 (730)
                                 .---...|+|||.+...-|+.++|||||||++||+++ |..||.+....+...+|+...++.+.+...+
T Consensus       321 -----------~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~~r~~~~~~~p  389 (474)
T KOG0194|consen  321 -----------LKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNGYRMPIPSKTP  389 (474)
T ss_pred             -----------cccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcCccCCCCCCCH
Confidence                       0012356999999999999999999999999999997 8999999988888878877788888777889


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchh
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKR  658 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~  658 (730)
                      .++..++.+|+..||++|+++..
T Consensus       390 ~~~~~~~~~c~~~~p~~R~tm~~  412 (474)
T KOG0194|consen  390 KELAKVMKQCWKKDPEDRPTMST  412 (474)
T ss_pred             HHHHHHHHHhccCChhhccCHHH
Confidence            99999999999999999999743

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.1e-37  Score=325.94  Aligned_cols=252  Identities=21%  Similarity=0.276  Sum_probs=203.4

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCe----EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRC----YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~----~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      +...+|++++.||+|+||.||+|.++.++.    .+|+|++.+...  ......+.+|+.+++.++||||+++++++.+ 
T Consensus         4 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-   80 (279)
T cd05057           4 LKETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS--PKANKEILDEAYVMASVDHPHVVRLLGICLS-   80 (279)
T ss_pred             cCHHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC--HHHHHHHHHHHHHHHhCCCCCcceEEEEEec-
Confidence            445789999999999999999999876654    589998876543  3445668889999999999999999999887 


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ...|+||||+++|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||++..+
T Consensus        81 ~~~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~  159 (279)
T cd05057          81 SQVQLITQLMPLGCLLDYVRNHK-DNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  159 (279)
T ss_pred             CceEEEEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccc
Confidence            78999999999999999877642 35899999999999999999999999999999999999999999999999998542


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ......                                                                          
T Consensus       160 ~~~~~~--------------------------------------------------------------------------  165 (279)
T cd05057         160 DVDEKE--------------------------------------------------------------------------  165 (279)
T ss_pred             cCcccc--------------------------------------------------------------------------
Confidence            100000                                                                          


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      .......++..|+|||.+....++.++|+|||||++|||++ |+.||.+....+... .+.....++.....+..+.++|
T Consensus       166 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  244 (279)
T cd05057         166 YHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPD-LLEKGERLPQPPICTIDVYMVL  244 (279)
T ss_pred             eecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHH-HHhCCCCCCCCCCCCHHHHHHH
Confidence            00000124568999999998889999999999999999998 999998765433332 2222333444456788999999


Q ss_pred             HhhhcCCCCCcCCchh
Q 004790          643 RGLLVKEPQHRLGVKR  658 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~  658 (730)
                      .+||..||++||++.+
T Consensus       245 ~~~l~~~p~~Rp~~~~  260 (279)
T cd05057         245 VKCWMIDAESRPTFKE  260 (279)
T ss_pred             HHHcCCChhhCCCHHH
Confidence            9999999999999643

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=1.1e-37  Score=325.62  Aligned_cols=252  Identities=18%  Similarity=0.222  Sum_probs=203.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECC----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc-
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSS----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET-  402 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~-  402 (730)
                      +..++|++.+.||+|+||.||+|.+..    ++..||+|.+...  ........+.+|+.+|+.++||||+++++++.. 
T Consensus         3 ~~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~--~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~   80 (280)
T cd05043           3 ISRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDH--ASEIQVTLLLQESCLLYGLSHQNILPILHVCIED   80 (280)
T ss_pred             cchhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCC--CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC
Confidence            345789999999999999999999876    3578999988643  233456778899999999999999999997654 


Q ss_pred             cceeeEEeeecCCCCccccccccCC------CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEec
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPG------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSD  476 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~D  476 (730)
                      +...++++||+++++|..++.....      ..+++..+..++.||+.||+|||+++++||||||+|||++.++.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d  160 (280)
T cd05043          81 GEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITD  160 (280)
T ss_pred             CCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECC
Confidence            6788999999999999988765422      4589999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcc
Q 004790          477 FDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPE  556 (730)
Q Consensus       477 FGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (730)
                      ||+++.+......                                                                   
T Consensus       161 ~g~~~~~~~~~~~-------------------------------------------------------------------  173 (280)
T cd05043         161 NALSRDLFPMDYH-------------------------------------------------------------------  173 (280)
T ss_pred             CCCcccccCCceE-------------------------------------------------------------------
Confidence            9998543110000                                                                   


Q ss_pred             cccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCC
Q 004790          557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATS  635 (730)
Q Consensus       557 ~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s  635 (730)
                             .......++..|+|||++.+..++.++|||||||++|||++ |+.||...+.... ...+.....++.....+
T Consensus       174 -------~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~  245 (280)
T cd05043         174 -------CLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEM-AAYLKDGYRLAQPINCP  245 (280)
T ss_pred             -------EeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHH-HHHHHcCCCCCCCCcCC
Confidence                   00001235678999999999999999999999999999998 9999987644332 23333334444445678


Q ss_pred             hhHHHHHHhhhcCCCCCcCCc
Q 004790          636 YASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      .++.++|.+||..||++||++
T Consensus       246 ~~~~~li~~~l~~~p~~Rps~  266 (280)
T cd05043         246 DELFAVMACCWALDPEERPSF  266 (280)
T ss_pred             HHHHHHHHHHcCCChhhCCCH
Confidence            899999999999999999995

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=7.6e-38  Score=325.96  Aligned_cols=240  Identities=24%  Similarity=0.331  Sum_probs=192.2

Q ss_pred             EEccCCcEEEEEEEECCCCe--EEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEEeeecC
Q 004790          338 RLGCGDIGSVYLSELSSTRC--YFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLVMEYCP  414 (730)
Q Consensus       338 ~LG~G~fG~Vyla~~~~t~~--~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LVmEy~~  414 (730)
                      .||+|+||.||+|+++.++.  .+|+|.+....  .......+.+|+++++.+ +||||++++++|.....+|+||||++
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~   79 (270)
T cd05047           2 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA--SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAP   79 (270)
T ss_pred             cCCCCCCceEEEEEEcCCCCeeEEEEEEccccC--CHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCC
Confidence            58999999999999988765  46888876422  224445678899999999 89999999999999999999999999


Q ss_pred             CCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          415 GGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       415 GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      +|+|.+++....              ...+++.+++.++.||+.||+|||++|++||||||+|||++.++.+||+|||++
T Consensus        80 ~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~  159 (270)
T cd05047          80 HGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLS  159 (270)
T ss_pred             CCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCc
Confidence            999998876432              135788999999999999999999999999999999999999999999999987


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      .....                                                                           
T Consensus       160 ~~~~~---------------------------------------------------------------------------  164 (270)
T cd05047         160 RGQEV---------------------------------------------------------------------------  164 (270)
T ss_pred             cccch---------------------------------------------------------------------------
Confidence            31000                                                                           


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHH
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASR  639 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~  639 (730)
                        ........++..|+|||++.+..++.++|+|||||++|||++ |..||.+.+....+..+ ......+.....+.++.
T Consensus       165 --~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  241 (270)
T cd05047         165 --YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKL-PQGYRLEKPLNCDDEVY  241 (270)
T ss_pred             --hhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHHHHH-hCCCCCCCCCcCCHHHH
Confidence              000001123567999999999899999999999999999996 99999876544333322 22223333345678999


Q ss_pred             HHHHhhhcCCCCCcCCch
Q 004790          640 DLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~  657 (730)
                      +||.+||..||.+||++.
T Consensus       242 ~li~~~l~~~p~~Rps~~  259 (270)
T cd05047         242 DLMRQCWREKPYERPSFA  259 (270)
T ss_pred             HHHHHHcccChhhCCCHH
Confidence            999999999999999953

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=8.1e-38  Score=320.64  Aligned_cols=246  Identities=24%  Similarity=0.345  Sum_probs=199.3

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGG  416 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GG  416 (730)
                      ++||.|+||.||++.+.. ++.||+|.+......  .....+.+|+++++.++||||+++++++.+....|+||||++|+
T Consensus         1 ~~lg~g~~g~v~~~~~~~-~~~v~~K~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   77 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG-NTEVAVKTCRSTLPP--DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGG   77 (251)
T ss_pred             CccccCCCceEEEEEEeC-CCcEEEEeccccCCH--HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCC
Confidence            469999999999999987 889999998765432  34566889999999999999999999999999999999999999


Q ss_pred             CccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCC
Q 004790          417 DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLD  496 (730)
Q Consensus       417 sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~  496 (730)
                      +|..++... ...+++..+..++.|++.||.|||++|++||||||+|||++.++++||+|||++......          
T Consensus        78 ~l~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~----------  146 (251)
T cd05041          78 SLLTFLRKK-KNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGG----------  146 (251)
T ss_pred             cHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCC----------
Confidence            999887653 246788899999999999999999999999999999999999999999999998432100          


Q ss_pred             CCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccC
Q 004790          497 SDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYL  576 (730)
Q Consensus       497 ~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~  576 (730)
                                .+                                                      ........++..|+
T Consensus       147 ----------~~------------------------------------------------------~~~~~~~~~~~~y~  162 (251)
T cd05041         147 ----------IY------------------------------------------------------TVSDGLKQIPIKWT  162 (251)
T ss_pred             ----------cc------------------------------------------------------eeccccCcceeccC
Confidence                      00                                                      00000113466799


Q ss_pred             ChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          577 APEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       577 APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      |||++.+..++.++|+|||||++|||++ |..||.+.........+. .....+.....+.++.+||.+||..+|++||+
T Consensus       163 ~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~  241 (251)
T cd05041         163 APEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIE-SGYRMPAPQLCPEEIYRLMLQCWAYDPENRPS  241 (251)
T ss_pred             ChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHh-cCCCCCCCccCCHHHHHHHHHHhccChhhCcC
Confidence            9999999899999999999999999998 899998765433333322 22233444567889999999999999999999


Q ss_pred             chhcHHHHHc
Q 004790          656 VKRGATEIKQ  665 (730)
Q Consensus       656 ~~~~a~elL~  665 (730)
                          +.++++
T Consensus       242 ----~~ell~  247 (251)
T cd05041         242 ----FSEIYN  247 (251)
T ss_pred             ----HHHHHH
Confidence                567664

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=1e-37  Score=319.68  Aligned_cols=242  Identities=22%  Similarity=0.318  Sum_probs=194.4

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGG  416 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GG  416 (730)
                      +.||+|+||.||+|... ++..+|+|+++....  ......+.+|+++++.++||||+++++++......|+||||++++
T Consensus         1 ~~ig~g~~g~vy~~~~~-~~~~~a~K~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   77 (250)
T cd05085           1 ELLGKGNFGEVFKGTLK-DKTPVAVKTCKEDLP--QELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGG   77 (250)
T ss_pred             CccCCCCCceEEEEEec-CCcEEEEEecCCcCC--HHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCC
Confidence            36899999999999865 577899999875432  233346788999999999999999999999999999999999999


Q ss_pred             CccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCC
Q 004790          417 DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLD  496 (730)
Q Consensus       417 sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~  496 (730)
                      +|..++.... ..+++..+..++.||+.||.|||++|++||||||+||+++.++.+||+|||++......          
T Consensus        78 ~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~----------  146 (250)
T cd05085          78 DFLSFLRKKK-DELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDG----------  146 (250)
T ss_pred             cHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceecccc----------
Confidence            9998776542 45789999999999999999999999999999999999999999999999998431100          


Q ss_pred             CCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccC
Q 004790          497 SDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYL  576 (730)
Q Consensus       497 ~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~  576 (730)
                                .                                                       ........+++.|+
T Consensus       147 ----------~-------------------------------------------------------~~~~~~~~~~~~y~  161 (250)
T cd05085         147 ----------I-------------------------------------------------------YSSSGLKQIPIKWT  161 (250)
T ss_pred             ----------c-------------------------------------------------------cccCCCCCCccccc
Confidence                      0                                                       00000113467899


Q ss_pred             ChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          577 APEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       577 APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      |||++.+..++.++|||||||++|+|++ |..||.+........++. ...........+..+.+||.+||..+|++||+
T Consensus       162 aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~  240 (250)
T cd05085         162 APEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVE-KGYRMSCPQKCPDDVYKVMQRCWDYKPENRPK  240 (250)
T ss_pred             CHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHHHcccCcccCCC
Confidence            9999998889999999999999999998 999998765443333322 22233333457899999999999999999999


Q ss_pred             chh
Q 004790          656 VKR  658 (730)
Q Consensus       656 ~~~  658 (730)
                      +.+
T Consensus       241 ~~~  243 (250)
T cd05085         241 FSE  243 (250)
T ss_pred             HHH
Confidence            543

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=1e-37  Score=320.76  Aligned_cols=250  Identities=23%  Similarity=0.351  Sum_probs=201.6

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      ..+|++.+.||.|+||.||++.+.. +..+|+|.+.......    ..+.+|+++++.++||||+++++++......|+|
T Consensus         3 ~~~~~~~~~ig~g~~g~v~~~~~~~-~~~~~~k~~~~~~~~~----~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v   77 (256)
T cd05112           3 PSELTLVQEIGSGQFGLVWLGYWLE-KRKVAIKTIREGAMSE----EDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLV   77 (256)
T ss_pred             hhHeEEEeeecCcccceEEEEEEeC-CCeEEEEECCCCCCCH----HHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEE
Confidence            3579999999999999999998864 5579999987554322    3467899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+.+++|.+++.... ..+++..++.++.|++.||+|||++|++||||||+||+++.++.+||+|||++.......  
T Consensus        78 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~--  154 (256)
T cd05112          78 FEFMEHGCLSDYLRAQR-GKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQ--  154 (256)
T ss_pred             EEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeecccCc--
Confidence            99999999998876542 458899999999999999999999999999999999999999999999999884321000  


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       155 -------------------------------------------------------------------------~~~~~~~  161 (256)
T cd05112         155 -------------------------------------------------------------------------YTSSTGT  161 (256)
T ss_pred             -------------------------------------------------------------------------ccccCCC
Confidence                                                                                     0000112


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .++..|+|||++.+..++.++|+|||||++|||++ |+.||........+..+... .........+.++.+|+.+||..
T Consensus       162 ~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~  240 (256)
T cd05112         162 KFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAG-FRLYKPRLASQSVYELMQHCWKE  240 (256)
T ss_pred             ccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhCC-CCCCCCCCCCHHHHHHHHHHccc
Confidence            35678999999999899999999999999999998 99999865544333332221 22222344688999999999999


Q ss_pred             CCCCcCCchhcHHHHHc
Q 004790          649 EPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~  665 (730)
                      +|++||+    +.++++
T Consensus       241 ~p~~Rp~----~~~~l~  253 (256)
T cd05112         241 RPEDRPS----FSLLLH  253 (256)
T ss_pred             ChhhCCC----HHHHHH
Confidence            9999999    567665

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.3e-37  Score=323.31  Aligned_cols=248  Identities=25%  Similarity=0.336  Sum_probs=200.2

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCC---CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSST---RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t---~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      ...+|.+.+.||+|+||.||+|.+...   ...||||.+.....  ....+.+.+|+.+++.++||||+++++++.++ .
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~--~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-~   80 (270)
T cd05056           4 QREDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS--PSVREKFLQEAYIMRQFDHPHIVKLIGVITEN-P   80 (270)
T ss_pred             chhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCC--HHHHHHHHHHHHHHHhCCCCchhceeEEEcCC-C
Confidence            346799999999999999999987544   44689998865431  24456788999999999999999999988764 5


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      .|+||||+++++|.+++.... ..+++..++.++.||+.||+|||++|++||||||+|||++.++.+||+|||++..+..
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~  159 (270)
T cd05056          81 VWIVMELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLED  159 (270)
T ss_pred             cEEEEEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeeccc
Confidence            789999999999999886542 3589999999999999999999999999999999999999999999999999853210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ...                                                                           ..
T Consensus       160 ~~~---------------------------------------------------------------------------~~  164 (270)
T cd05056         160 ESY---------------------------------------------------------------------------YK  164 (270)
T ss_pred             ccc---------------------------------------------------------------------------ee
Confidence            000                                                                           00


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~  644 (730)
                      .....++..|+|||.+.+..++.++|+|||||++|||++ |..||.+......+..+.. ....+....++..+++||.+
T Consensus       165 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~  243 (270)
T cd05056         165 ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIEN-GERLPMPPNCPPTLYSLMTK  243 (270)
T ss_pred             cCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHc-CCcCCCCCCCCHHHHHHHHH
Confidence            001234568999999998899999999999999999995 9999987765544433322 22334445678999999999


Q ss_pred             hhcCCCCCcCCc
Q 004790          645 LLVKEPQHRLGV  656 (730)
Q Consensus       645 lL~~DP~~R~t~  656 (730)
                      ||..+|++||++
T Consensus       244 ~l~~~P~~Rpt~  255 (270)
T cd05056         244 CWAYDPSKRPRF  255 (270)
T ss_pred             HcCCChhhCcCH
Confidence            999999999994

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=5.7e-38  Score=326.38  Aligned_cols=250  Identities=30%  Similarity=0.453  Sum_probs=198.3

Q ss_pred             EEEeEEccCCcEEEEEEEEC----CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          334 RLLKRLGCGDIGSVYLSELS----STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       334 ~il~~LG~G~fG~Vyla~~~----~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .+.+.||.|.||.||+|.+.    ..+..|+||+++..  ........+.+|+++|+.++||||+++++++.....+++|
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~--~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv   79 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPS--SSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLV   79 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTT--SSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEE
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccc--cccccceeeeeccccccccccccccccccccccccccccc
Confidence            56789999999999999988    45678999999542  2234467788999999999999999999999988889999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||||++|+|.+++.......+++.....++.||+.||.|||+++|+|+||++.|||++.++.+||+|||++........ 
T Consensus        80 ~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~-  158 (259)
T PF07714_consen   80 MEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSK-  158 (259)
T ss_dssp             EE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSS-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            9999999999988876456799999999999999999999999999999999999999999999999999854200000 


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       159 -------------------------------------------------------------------------~~~~~~~  165 (259)
T PF07714_consen  159 -------------------------------------------------------------------------YKNDSSQ  165 (259)
T ss_dssp             -------------------------------------------------------------------------EEESTTS
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0001122


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .+...|+|||++.+..++.++||||||+++|||++ |+.||...........+ ......+....++..+.+||.+||..
T Consensus       166 ~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~C~~~  244 (259)
T PF07714_consen  166 QLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKL-KQGQRLPIPDNCPKDIYSLIQQCWSH  244 (259)
T ss_dssp             ESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHH-HTTEETTSBTTSBHHHHHHHHHHT-S
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccceeccchhHHHHHHHHHHcCC
Confidence            46778999999999999999999999999999999 78999877555544444 33344444556899999999999999


Q ss_pred             CCCCcCCchhcHHHHH
Q 004790          649 EPQHRLGVKRGATEIK  664 (730)
Q Consensus       649 DP~~R~t~~~~a~elL  664 (730)
                      ||++||++    .+|+
T Consensus       245 ~p~~RPs~----~~i~  256 (259)
T PF07714_consen  245 DPEKRPSF----QEIL  256 (259)
T ss_dssp             SGGGS--H----HHHH
T ss_pred             ChhhCcCH----HHHH
Confidence            99999994    5655

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=1.3e-37  Score=323.13  Aligned_cols=243  Identities=20%  Similarity=0.302  Sum_probs=186.6

Q ss_pred             eEEccCCcEEEEEEEECC--CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecC
Q 004790          337 KRLGCGDIGSVYLSELSS--TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCP  414 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~--t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~  414 (730)
                      ++||+|+||+||+|+...  ....+|+|.+....  .......+.+|+.+++.++||||+++++.+.+...+|+||||++
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~   78 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASA--TPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCP   78 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccC--ChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCC
Confidence            369999999999997543  34578888875432  22334567889999999999999999999999999999999999


Q ss_pred             CCCccccccccCC---CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          415 GGDLHTLRQRQPG---KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       415 GGsL~~ll~~~~~---~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      +|+|.+++.....   ..+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......     
T Consensus        79 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~-----  153 (269)
T cd05042          79 LGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPE-----  153 (269)
T ss_pred             CCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccccccc-----
Confidence            9999998765432   33567888899999999999999999999999999999999999999999987421000     


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                    +.                                                       ........+
T Consensus       154 --------------~~-------------------------------------------------------~~~~~~~~~  164 (269)
T cd05042         154 --------------DY-------------------------------------------------------YITKDCHAV  164 (269)
T ss_pred             --------------hh-------------------------------------------------------eeccCCCCC
Confidence                          00                                                       000012346


Q ss_pred             CcccCChhhhcc-------CCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecc-cccCCC---CCCCChhHH
Q 004790          572 THEYLAPEIIKG-------EGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQ-QLRFPD---SPATSYASR  639 (730)
Q Consensus       572 T~~Y~APEvl~g-------~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~-~~~~p~---~~~~s~~~~  639 (730)
                      ++.|+|||++..       ..++.++|||||||++|||++ |..||....+.+.+..++.. ...++.   ....+....
T Consensus       165 ~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (269)
T cd05042         165 PLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWY  244 (269)
T ss_pred             cccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHH
Confidence            788999999853       346789999999999999998 88999876555444433322 222222   235677888


Q ss_pred             HHHHhhhcCCCCCcCCc
Q 004790          640 DLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~  656 (730)
                      +++..|+ .||++||++
T Consensus       245 ~~~~~~~-~dp~~Rpt~  260 (269)
T cd05042         245 EVMQFCW-LDPETRPTA  260 (269)
T ss_pred             HHHHHHh-cCcccccCH
Confidence            9999998 599999994

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=4.5e-38  Score=325.53  Aligned_cols=238  Identities=22%  Similarity=0.292  Sum_probs=188.7

Q ss_pred             eEEccCCcEEEEEEEECCCCeE-------EEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          337 KRLGCGDIGSVYLSELSSTRCY-------FAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~-------vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +.||.|+||.||+|.++..+..       +|+|.+.+..   ....+.+..|+.+|+.++||||+++++++..+...|+|
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv   77 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSH---RNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMV   77 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchh---HHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEE
Confidence            3689999999999998665433       8888876542   23445678899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc--------eEEecccccc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH--------IMLSDFDLSL  481 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~--------vKL~DFGlA~  481 (730)
                      |||+++|+|..++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++.        ++|+|||++.
T Consensus        78 ~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~  156 (258)
T cd05078          78 QEYVKFGSLDTYLKKNK-NLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISI  156 (258)
T ss_pred             EecCCCCcHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEeccccccc
Confidence            99999999999887542 36889999999999999999999999999999999999987765        6888888763


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      ...                                                                             
T Consensus       157 ~~~-----------------------------------------------------------------------------  159 (258)
T cd05078         157 TVL-----------------------------------------------------------------------------  159 (258)
T ss_pred             ccC-----------------------------------------------------------------------------
Confidence            210                                                                             


Q ss_pred             ccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhC-CCCCCCCCCccceeeeecccccCCCCCCCChhHH
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYG-KTPFKGSGNRATLFNVVGQQLRFPDSPATSYASR  639 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG-~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~  639 (730)
                         ....+.+++.|+|||++.+. .++.++|||||||++|||++| ..||........ ..+......+|.  ..+.++.
T Consensus       160 ---~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~  233 (258)
T cd05078         160 ---PKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKK-LQFYEDRHQLPA--PKWTELA  233 (258)
T ss_pred             ---CchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHH-HHHHHccccCCC--CCcHHHH
Confidence               00124678899999999874 478999999999999999998 466655433222 122223333332  3567899


Q ss_pred             HHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          640 DLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      +||.+||+.||++||+    +++|++
T Consensus       234 ~li~~~l~~~p~~Rps----~~~il~  255 (258)
T cd05078         234 NLINQCMDYEPDFRPS----FRAIIR  255 (258)
T ss_pred             HHHHHHhccChhhCCC----HHHHHH
Confidence            9999999999999999    567765

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=1.3e-37  Score=322.80  Aligned_cols=251  Identities=25%  Similarity=0.386  Sum_probs=201.8

Q ss_pred             CeEEEeEEccCCcEEEEEEEECC-CCeEEEEEEeehhhh-------hhHHHHHHHHHHHHHHHh-cCCCCCccccccccc
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSS-TRCYFAMKVMDKASL-------ASRKKLTRAQTEREILQL-LDHPFLPTLYTHFET  402 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~-t~~~vAvKvi~k~~~-------~~~~~~~~~~~E~~IL~~-L~HPnIV~L~~~f~~  402 (730)
                      +|++.+.||+|+||.||++++.. +++.+|+|.+.....       ........+.+|+.++.. ++||||++++++|..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            48889999999999999999988 688999998864321       223445567788888865 799999999999999


Q ss_pred             cceeeEEeeecCCCCccccccc--cCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQR--QPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDL  479 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~--~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGl  479 (730)
                      ++..|+||||++|++|.+++..  .....+++..++.++.|++.||.|||+ .||+||||||+|||++.++.+||+|||+
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~dfg~  160 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGL  160 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEecccc
Confidence            9999999999999999887643  223568999999999999999999996 7899999999999999999999999999


Q ss_pred             cccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccc
Q 004790          480 SLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVA  559 (730)
Q Consensus       480 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (730)
                      +......                                                                         
T Consensus       161 ~~~~~~~-------------------------------------------------------------------------  167 (269)
T cd08528         161 AKQKQPE-------------------------------------------------------------------------  167 (269)
T ss_pred             eeecccc-------------------------------------------------------------------------
Confidence            8431100                                                                         


Q ss_pred             ccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHH
Q 004790          560 EPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASR  639 (730)
Q Consensus       560 e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~  639 (730)
                          .......|+..|+|||.+.+..++.++|+||||+++|||++|+.||...........+.............+.++.
T Consensus       168 ----~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  243 (269)
T cd08528         168 ----SKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLSLATKIVEAVYEPLPEGMYSEDVT  243 (269)
T ss_pred             ----cccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHHHHHHHHhhccCCcCCcccCCHHHH
Confidence                0011246889999999999988999999999999999999999999765544333333333332222235678999


Q ss_pred             HHHHhhhcCCCCCcCCchhc
Q 004790          640 DLIRGLLVKEPQHRLGVKRG  659 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~~~  659 (730)
                      +||++||..||++||++.+.
T Consensus       244 ~li~~cl~~~p~~Rp~~~e~  263 (269)
T cd08528         244 DVITSCLTPDAEARPDIIQV  263 (269)
T ss_pred             HHHHHHCCCCCccCCCHHHH
Confidence            99999999999999996433

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.1e-37  Score=322.46  Aligned_cols=252  Identities=25%  Similarity=0.368  Sum_probs=200.7

Q ss_pred             CCeEEEeEEccCCcEEEEEEEEC----CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc--cc
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELS----STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET--DR  404 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~----~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~--~~  404 (730)
                      .+|++++.||+|+||.||++++.    .++..||+|++......  .....+++|+++++.++||||+++++++..  ..
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~   81 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE--QHRSDFEREIEILRTLDHENIVKYKGVCEKPGGR   81 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch--HHHHHHHHHHHHHHhCCCCChheEEeeeecCCCC
Confidence            57889999999999999999865    34789999999765432  455678999999999999999999998877  66


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      ..|+||||+++++|..++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.++|+|||++....
T Consensus        82 ~~~lv~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  160 (284)
T cd05038          82 SLRLIMEYLPSGSLRDYLQRHR-DQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLP  160 (284)
T ss_pred             ceEEEEecCCCCCHHHHHHhCc-cccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccccccc
Confidence            8999999999999999887653 358999999999999999999999999999999999999999999999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ......                                                                         .
T Consensus       161 ~~~~~~-------------------------------------------------------------------------~  167 (284)
T cd05038         161 EDKDYY-------------------------------------------------------------------------Y  167 (284)
T ss_pred             cCCcce-------------------------------------------------------------------------e
Confidence            000000                                                                         0


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccc--------------eeeeecccccCCC
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT--------------LFNVVGQQLRFPD  630 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~--------------l~~i~~~~~~~p~  630 (730)
                      ......++..|+|||.+.+..++.++|+|||||++|||++|+.||........              +...+.....++.
T Consensus       168 ~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (284)
T cd05038         168 VKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPR  247 (284)
T ss_pred             ccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCCcCCC
Confidence            00012345679999999988999999999999999999999999876432210              1111222333444


Q ss_pred             CCCCChhHHHHHHhhhcCCCCCcCCchh
Q 004790          631 SPATSYASRDLIRGLLVKEPQHRLGVKR  658 (730)
Q Consensus       631 ~~~~s~~~~dLI~~lL~~DP~~R~t~~~  658 (730)
                      ...++.++.+||.+||..+|++||++.+
T Consensus       248 ~~~~~~~~~~li~~cl~~~p~~Rpt~~e  275 (284)
T cd05038         248 PPSCPDEVYDLMKLCWEAEPQDRPSFAD  275 (284)
T ss_pred             CccCCHHHHHHHHHHhccChhhCCCHHH
Confidence            4566789999999999999999999543

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-38  Score=339.12  Aligned_cols=273  Identities=27%  Similarity=0.428  Sum_probs=221.6

Q ss_pred             cCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh----hHHHHHHHHHHHHHHHhcCCCCCcccccc
Q 004790          324 RDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA----SRKKLTRAQTEREILQLLDHPFLPTLYTH  399 (730)
Q Consensus       324 ~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~----~~~~~~~~~~E~~IL~~L~HPnIV~L~~~  399 (730)
                      .+..+..++|-++..||+|+|+.||+|.+....++||+|+-....-.    .....+++.+|.+|.+.|+||.||++|++
T Consensus       456 kDHptLn~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDy  535 (775)
T KOG1151|consen  456 KDHPTLNDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDY  535 (775)
T ss_pred             ccCcchHHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeee
Confidence            44556678899999999999999999999999999999986432222    22345678999999999999999999999


Q ss_pred             cc-ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc--eeecccCCccEEecC---CCceE
Q 004790          400 FE-TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG--VVYRDLKPENVLVRD---DGHIM  473 (730)
Q Consensus       400 f~-~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g--IVHRDLKPeNILl~~---~g~vK  473 (730)
                      |. +...+|-|+|||+|.||.-+++.+  +.++|..|+.|+-||+.||.||.+..  |||-||||.|||+-.   -|.||
T Consensus       536 fslDtdsFCTVLEYceGNDLDFYLKQh--klmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIK  613 (775)
T KOG1151|consen  536 FSLDTDSFCTVLEYCEGNDLDFYLKQH--KLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIK  613 (775)
T ss_pred             eeeccccceeeeeecCCCchhHHHHhh--hhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeE
Confidence            97 556789999999999999888776  68999999999999999999999765  999999999999954   47899


Q ss_pred             EecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCC
Q 004790          474 LSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSST  553 (730)
Q Consensus       474 L~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (730)
                      |+||||++.+.....          .+.                                             .      
T Consensus       614 ITDFGLSKIMdddSy----------~~v---------------------------------------------d------  632 (775)
T KOG1151|consen  614 ITDFGLSKIMDDDSY----------NSV---------------------------------------------D------  632 (775)
T ss_pred             eeecchhhhccCCcc----------Ccc---------------------------------------------c------
Confidence            999999976532110          000                                             0      


Q ss_pred             CcccccccccccccccccCcccCChhhhccC----CCCCcceeechhHHHHHHhhCCCCCCCCCCcccee---eee-ccc
Q 004790          554 LPELVAEPTAARSMSFVGTHEYLAPEIIKGE----GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF---NVV-GQQ  625 (730)
Q Consensus       554 ~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~----~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~---~i~-~~~  625 (730)
                              ...-+..+.||.||++||.+.-.    ..+.++||||+|||+|.+++|+-||...-....+.   .|+ ...
T Consensus       633 --------GmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlkAtE  704 (775)
T KOG1151|consen  633 --------GMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKATE  704 (775)
T ss_pred             --------ceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhhhchhccee
Confidence                    00122346899999999998533    36889999999999999999999997654332221   122 356


Q ss_pred             ccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          626 LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       626 ~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      +.||..+-++.++++||++||++.-++|+.    +.+|-.||||.-
T Consensus       705 VqFP~KPvVsseAkaFIRRCLaYRKeDR~D----V~qLA~dpyllP  746 (775)
T KOG1151|consen  705 VQFPPKPVVSSEAKAFIRRCLAYRKEDRID----VQQLACDPYLLP  746 (775)
T ss_pred             ccCCCCCccCHHHHHHHHHHHHhhhhhhhh----HHHHccCccccc
Confidence            789999999999999999999999999999    689999999973

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=9.7e-38  Score=323.30  Aligned_cols=244  Identities=21%  Similarity=0.308  Sum_probs=194.5

Q ss_pred             eEEccCCcEEEEEEEECCCC------eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          337 KRLGCGDIGSVYLSELSSTR------CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~------~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +.||+|+||.||+|+++...      ..+|+|.+.+...  ......+.+|+.+|+.++||||+++++++......|+||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGAT--DQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIM   78 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccc--hhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEE
Confidence            36899999999999986544      6899998865421  233456788999999999999999999999999999999


Q ss_pred             eecCCCCcccccccc-----CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC-----ceEEeccccc
Q 004790          411 EYCPGGDLHTLRQRQ-----PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG-----HIMLSDFDLS  480 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~-----~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g-----~vKL~DFGlA  480 (730)
                      ||+++++|..++...     ....+++..+..++.||+.||.|||+++++|+||||+|||++.++     .++|+|||++
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~  158 (269)
T cd05044          79 ELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLA  158 (269)
T ss_pred             eccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccc
Confidence            999999999887643     223478899999999999999999999999999999999999877     8999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ..+.....                                                                        
T Consensus       159 ~~~~~~~~------------------------------------------------------------------------  166 (269)
T cd05044         159 RDIYKSDY------------------------------------------------------------------------  166 (269)
T ss_pred             cccccccc------------------------------------------------------------------------
Confidence            53210000                                                                        


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHH
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASR  639 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~  639 (730)
                        ........++..|+|||++.+..++.++|||||||++|||++ |+.||...+.......+. ....+......+..+.
T Consensus       167 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  243 (269)
T cd05044         167 --YRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVT-AGGRLQKPENCPDKIY  243 (269)
T ss_pred             --cccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHh-cCCccCCcccchHHHH
Confidence              000011245778999999999999999999999999999997 999998765544333322 2223333456788999


Q ss_pred             HHHHhhhcCCCCCcCCch
Q 004790          640 DLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~  657 (730)
                      +||.+||..+|++||++.
T Consensus       244 ~li~~~l~~~p~~Rp~~~  261 (269)
T cd05044         244 QLMTNCWAQDPSERPTFD  261 (269)
T ss_pred             HHHHHHcCCCcccCCCHH
Confidence            999999999999999953

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=2.6e-37  Score=321.41  Aligned_cols=247  Identities=23%  Similarity=0.292  Sum_probs=189.2

Q ss_pred             eEEccCCcEEEEEEEEC--CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecC
Q 004790          337 KRLGCGDIGSVYLSELS--STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCP  414 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~--~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~  414 (730)
                      +.||+|+||.||+|.+.  .++..+|+|.++....  ......+.+|+.+++.++||||+++++++.+...+|+||||++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   78 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSAS--VQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCP   78 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCC--hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCC
Confidence            36899999999999864  3456799998865432  2233467889999999999999999999999999999999999


Q ss_pred             CCCccccccccC---CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          415 GGDLHTLRQRQP---GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       415 GGsL~~ll~~~~---~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      +|+|.+++....   ...+++..++.++.||+.||+|||++||+||||||+|||++.++++||+|||++......     
T Consensus        79 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~-----  153 (269)
T cd05087          79 LGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKE-----  153 (269)
T ss_pred             CCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCc-----
Confidence            999998876432   134567788889999999999999999999999999999999999999999987321000     


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                    .                                                       .........|
T Consensus       154 --------------~-------------------------------------------------------~~~~~~~~~~  164 (269)
T cd05087         154 --------------D-------------------------------------------------------YYVTPDQLWV  164 (269)
T ss_pred             --------------c-------------------------------------------------------eeecCCCcCC
Confidence                          0                                                       0000112467


Q ss_pred             CcccCChhhhccC-------CCCCcceeechhHHHHHHhh-CCCCCCCCCCccceee-eecccccCCCC---CCCChhHH
Q 004790          572 THEYLAPEIIKGE-------GHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFN-VVGQQLRFPDS---PATSYASR  639 (730)
Q Consensus       572 T~~Y~APEvl~g~-------~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~-i~~~~~~~p~~---~~~s~~~~  639 (730)
                      ++.|+|||++.+.       .++.++|||||||++|||++ |+.||........+.. +......++..   ...+..+.
T Consensus       165 ~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (269)
T cd05087         165 PLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWY  244 (269)
T ss_pred             cccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHH
Confidence            8899999998643       35789999999999999996 9999987654433222 22222222221   24577889


Q ss_pred             HHHHhhhcCCCCCcCCchhcHHHHH
Q 004790          640 DLIRGLLVKEPQHRLGVKRGATEIK  664 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~~~a~elL  664 (730)
                      +||++|+ .+|++||+    +++|+
T Consensus       245 ~l~~~c~-~~P~~Rpt----~~~l~  264 (269)
T cd05087         245 EVMQFCW-LQPEQRPS----AEEVH  264 (269)
T ss_pred             HHHHHHh-cCcccCCC----HHHHH
Confidence            9999998 68999999    45654

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=3.6e-37  Score=327.23  Aligned_cols=254  Identities=22%  Similarity=0.301  Sum_probs=201.8

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCe----EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRC----YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~----~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      +..++|+.++.||+|+||.||+|++..++.    .+|+|++.....  ......+.+|+.+++.++||||+++++++...
T Consensus         4 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~   81 (303)
T cd05110           4 LKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTG--PKANVEFMDEALIMASMDHPHLVRLLGVCLSP   81 (303)
T ss_pred             cchhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCC--HHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC
Confidence            455789999999999999999999877765    478898865432  23334578899999999999999999988764


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                       ..++|+||+++|+|.+++... ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.+
T Consensus        82 -~~~~v~e~~~~g~l~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~  159 (303)
T cd05110          82 -TIQLVTQLMPHGCLLDYVHEH-KDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLL  159 (303)
T ss_pred             -CceeeehhcCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccc
Confidence             467999999999999887654 245889999999999999999999999999999999999999999999999998542


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      .....                                                                          .
T Consensus       160 ~~~~~--------------------------------------------------------------------------~  165 (303)
T cd05110         160 EGDEK--------------------------------------------------------------------------E  165 (303)
T ss_pred             cCccc--------------------------------------------------------------------------c
Confidence            10000                                                                          0


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      .......++..|+|||++.+..++.++|||||||++|||++ |..||.+.... .+..++.....++.....+..+.++|
T Consensus       166 ~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li  244 (303)
T cd05110         166 YNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTR-EIPDLLEKGERLPQPPICTIDVYMVM  244 (303)
T ss_pred             cccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHHCCCCCCCCCCCCHHHHHHH
Confidence            00011245778999999999999999999999999999997 99999775432 23333333444455556788999999


Q ss_pred             HhhhcCCCCCcCCchhcH
Q 004790          643 RGLLVKEPQHRLGVKRGA  660 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a  660 (730)
                      .+||..||++||++++.+
T Consensus       245 ~~c~~~~p~~Rp~~~~l~  262 (303)
T cd05110         245 VKCWMIDADSRPKFKELA  262 (303)
T ss_pred             HHHcCCChhhCcCHHHHH
Confidence            999999999999964433

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-37  Score=353.91  Aligned_cols=258  Identities=28%  Similarity=0.442  Sum_probs=225.4

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccc-----cc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFE-----TD  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~-----~~  403 (730)
                      ...|+++.+||.|.+|.||+++++.+++..|+|++....-.    -+.+..|.+||+.+ +|||++.+|++|.     .+
T Consensus        18 ~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~----deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~   93 (953)
T KOG0587|consen   18 ADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDE----EEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNG   93 (953)
T ss_pred             CCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccc----cHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCC
Confidence            35699999999999999999999999999999998765422    23466788999887 8999999999884     46


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      +.+|||||||.||+..++.+...+..+.|..+..|+++++.||.+||.+.++|||||-.|||++.+|.|||+|||++.++
T Consensus        94 DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQl  173 (953)
T KOG0587|consen   94 DQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL  173 (953)
T ss_pred             CeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeeeeeeee
Confidence            78999999999999999998888889999999999999999999999999999999999999999999999999998543


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                            +.
T Consensus       174 ds----------------------------------------------------------------------------T~  177 (953)
T KOG0587|consen  174 DS----------------------------------------------------------------------------TV  177 (953)
T ss_pred             ec----------------------------------------------------------------------------cc
Confidence            10                                                                            23


Q ss_pred             ccccccccCcccCChhhhccC-----CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-cCCCCCCCChh
Q 004790          564 ARSMSFVGTHEYLAPEIIKGE-----GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-RFPDSPATSYA  637 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~-----~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-~~p~~~~~s~~  637 (730)
                      .+..+++|||.|||||++...     .|+..+|+||||++..||.-|.+|+........+|.|...+. +...+..++.+
T Consensus       178 grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmraLF~IpRNPPPkLkrp~kWs~~  257 (953)
T KOG0587|consen  178 GRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKRPKKWSKK  257 (953)
T ss_pred             ccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhhhhccCCCCCCccccchhhHHHH
Confidence            355678999999999999754     478899999999999999999999999988888888865443 23335667889


Q ss_pred             HHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          638 SRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      +.|||..||.+|-.+||+    ..++|+|||...
T Consensus       258 FndFIs~cL~Kd~e~RP~----~~~ll~hpFi~e  287 (953)
T KOG0587|consen  258 FNDFISTCLVKDYEQRPS----TEELLKHPFITE  287 (953)
T ss_pred             HHHHHHHHHhhccccCcc----hhhhccCCcccc
Confidence            999999999999999999    689999999985

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=5.8e-37  Score=316.27  Aligned_cols=245  Identities=18%  Similarity=0.275  Sum_probs=188.2

Q ss_pred             eEEccCCcEEEEEEEECC---CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc-ccceeeEEeee
Q 004790          337 KRLGCGDIGSVYLSELSS---TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE-TDRFSCLVMEY  412 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~---t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~-~~~~l~LVmEy  412 (730)
                      +.||+|+||.||+|.+..   ....+|+|.+....  .......+.+|+.+++.++||||+++++++. .++..|+||||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~   78 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRIT--DLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPY   78 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccC--CHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEec
Confidence            368999999999998643   34679999885422  2244567788999999999999999999664 56678999999


Q ss_pred             cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccccc
Q 004790          413 CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT  492 (730)
Q Consensus       413 ~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~  492 (730)
                      +.+|+|..++.+.. ..+++..+..++.||+.||.|||+.+|+||||||+|||++.++.+||+|||++.........   
T Consensus        79 ~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~---  154 (262)
T cd05058          79 MKHGDLRNFIRSET-HNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYY---  154 (262)
T ss_pred             CCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcce---
Confidence            99999999876542 34677778889999999999999999999999999999999999999999998432100000   


Q ss_pred             CCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccC
Q 004790          493 SSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT  572 (730)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT  572 (730)
                                                                                           .........++
T Consensus       155 ---------------------------------------------------------------------~~~~~~~~~~~  165 (262)
T cd05058         155 ---------------------------------------------------------------------SVHNHTGAKLP  165 (262)
T ss_pred             ---------------------------------------------------------------------eecccccCcCC
Confidence                                                                                 00000112467


Q ss_pred             cccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCC
Q 004790          573 HEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQ  651 (730)
Q Consensus       573 ~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~  651 (730)
                      ..|+|||++.+..++.++|||||||++|||++ |.+||...+.......+... ...+.....+..+.+||.+||..+|+
T Consensus       166 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~~p~  244 (262)
T cd05058         166 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQG-RRLLQPEYCPDPLYEVMLSCWHPKPE  244 (262)
T ss_pred             ccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcC-CCCCCCCcCCHHHHHHHHHHcCCChh
Confidence            78999999999899999999999999999999 56677665443333222222 22233345678999999999999999


Q ss_pred             CcCCch
Q 004790          652 HRLGVK  657 (730)
Q Consensus       652 ~R~t~~  657 (730)
                      +||++.
T Consensus       245 ~Rp~~~  250 (262)
T cd05058         245 MRPTFS  250 (262)
T ss_pred             hCCCHH
Confidence            999953

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=4.3e-37  Score=319.98  Aligned_cols=239  Identities=21%  Similarity=0.274  Sum_probs=187.1

Q ss_pred             eEEccCCcEEEEEEEECCC------------CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          337 KRLGCGDIGSVYLSELSST------------RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t------------~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      +.||+|+||.||+|+....            ...+|+|++....   ......+.+|+.+++.++||||+++++++..+.
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~---~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~   77 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSH---RDISLAFFETASMMRQVSHKHIVLLYGVCVRDV   77 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhh---hhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            3689999999999986432            2358899876542   233456788999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc-------eEEecc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH-------IMLSDF  477 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~-------vKL~DF  477 (730)
                      ..|+||||+++|+|..++.+. ...+++..++.++.||+.||+|||++||+||||||+|||++.++.       ++|+||
T Consensus        78 ~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~  156 (262)
T cd05077          78 ENIMVEEFVEFGPLDLFMHRK-SDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDP  156 (262)
T ss_pred             CCEEEEecccCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCC
Confidence            999999999999998877643 246899999999999999999999999999999999999987664       899999


Q ss_pred             cccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccc
Q 004790          478 DLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPEL  557 (730)
Q Consensus       478 GlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (730)
                      |++....                                                                         
T Consensus       157 g~~~~~~-------------------------------------------------------------------------  163 (262)
T cd05077         157 GIPITVL-------------------------------------------------------------------------  163 (262)
T ss_pred             CCCcccc-------------------------------------------------------------------------
Confidence            9873210                                                                         


Q ss_pred             ccccccccccccccCcccCChhhhc-cCCCCCcceeechhHHHHHHh-hCCCCCCCCCCccceeeeecccccCCCCCCCC
Q 004790          558 VAEPTAARSMSFVGTHEYLAPEIIK-GEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLFNVVGQQLRFPDSPATS  635 (730)
Q Consensus       558 ~~e~~~~~~~s~vGT~~Y~APEvl~-g~~~~~~sDIWSLG~iLyELl-tG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s  635 (730)
                             ......||..|+|||++. +..++.++|||||||++|||+ .|..||......+. ..........  ....+
T Consensus       164 -------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~-~~~~~~~~~~--~~~~~  233 (262)
T cd05077         164 -------SRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEK-ERFYEGQCML--VTPSC  233 (262)
T ss_pred             -------CcccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHH-HHHHhcCccC--CCCCh
Confidence                   001135788899999987 466899999999999999998 58998876432211 1111222211  22345


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      .++++||.+||..||.+||+    ..+|+++
T Consensus       234 ~~~~~li~~cl~~dp~~Rp~----~~~il~~  260 (262)
T cd05077         234 KELADLMTHCMNYDPNQRPF----FRAIMRD  260 (262)
T ss_pred             HHHHHHHHHHcCCChhhCcC----HHHHHHh
Confidence            78999999999999999999    4677654

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.3e-38  Score=369.37  Aligned_cols=271  Identities=30%  Similarity=0.442  Sum_probs=207.9

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc------
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET------  402 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~------  402 (730)
                      ...+|+.++.||+||||.||+++++-+|+.||||.|....  +.+...++.+|+..|.+|+|||||++|..|..      
T Consensus       477 Y~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~--s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~  554 (1351)
T KOG1035|consen  477 YLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA--SDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELT  554 (1351)
T ss_pred             HhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch--HHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccc
Confidence            3578999999999999999999999999999999998765  55677889999999999999999999876600      


Q ss_pred             --------------------------------------------------------------------------------
Q 004790          403 --------------------------------------------------------------------------------  402 (730)
Q Consensus       403 --------------------------------------------------------------------------------  402 (730)
                                                                                                      
T Consensus       555 ~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS  634 (1351)
T KOG1035|consen  555 VLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTS  634 (1351)
T ss_pred             cccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccccc
Confidence                                                                                            


Q ss_pred             -------------------------c--------ceeeEEeeecCCCCccccccccCCCCc--cHHHHHHhHHHHHHHHH
Q 004790          403 -------------------------D--------RFSCLVMEYCPGGDLHTLRQRQPGKHF--SEYAARFYAAEVLLALE  447 (730)
Q Consensus       403 -------------------------~--------~~l~LVmEy~~GGsL~~ll~~~~~~~l--se~~a~~~~~qIl~AL~  447 (730)
                                               +        ..+||-||||+...|.+++.+.   .+  ....++.+++||+.||.
T Consensus       635 ~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N---~~~~~~d~~wrLFreIlEGLa  711 (1351)
T KOG1035|consen  635 DSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRN---HFNSQRDEAWRLFREILEGLA  711 (1351)
T ss_pred             ccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhc---ccchhhHHHHHHHHHHHHHHH
Confidence                                     0        2368999999888888887765   33  36788999999999999


Q ss_pred             HhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCc
Q 004790          448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACF  527 (730)
Q Consensus       448 yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~  527 (730)
                      |+|++|||||||||.||+++.+++|||+|||+|+........     .+.+.+                           
T Consensus       712 YIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~-----~d~~~~---------------------------  759 (1351)
T KOG1035|consen  712 YIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLES-----IDQDLS---------------------------  759 (1351)
T ss_pred             HHHhCceeeccCCcceeEEcCCCCeeecccccchhhhhhhhh-----HhhccC---------------------------
Confidence            999999999999999999999999999999999652210000     000000                           


Q ss_pred             cCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCC---CCCcceeechhHHHHHHhh
Q 004790          528 IPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEG---HGSAVDWWTFGIFLHELLY  604 (730)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~---~~~~sDIWSLG~iLyELlt  604 (730)
                                ..+                ..........++.+||.-|+|||++.+..   |+.++||||||||||||++
T Consensus       760 ----------~~~----------------~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y  813 (1351)
T KOG1035|consen  760 ----------FST----------------NRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY  813 (1351)
T ss_pred             ----------ccc----------------cccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhc
Confidence                      000                00011112345679999999999998766   9999999999999999995


Q ss_pred             CCCCCCCCCCccc-eeeeecccccCC---CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          605 GKTPFKGSGNRAT-LFNVVGQQLRFP---DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       605 G~~PF~g~~~~~~-l~~i~~~~~~~p---~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                         ||...-++.. +.++-.+.++++   ..+..+ .-..+|+.||..||.+|||    |.|+|++.||-
T Consensus       814 ---PF~TsMERa~iL~~LR~g~iP~~~~f~~~~~~-~e~slI~~Ll~hdP~kRPt----A~eLL~s~llp  875 (1351)
T KOG1035|consen  814 ---PFGTSMERASILTNLRKGSIPEPADFFDPEHP-EEASLIRWLLSHDPSKRPT----ATELLNSELLP  875 (1351)
T ss_pred             ---cCCchHHHHHHHHhcccCCCCCCcccccccch-HHHHHHHHHhcCCCccCCC----HHHHhhccCCC
Confidence               5765433332 333334445444   222222 3458999999999999999    89999999998

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.8e-38  Score=350.60  Aligned_cols=253  Identities=24%  Similarity=0.390  Sum_probs=213.1

Q ss_pred             EEEeEEccCCcEEEEEEEECCCCeEEEEEEeehh-hhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce--eeEEe
Q 004790          334 RLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKA-SLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF--SCLVM  410 (730)
Q Consensus       334 ~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~-~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~--l~LVm  410 (730)
                      +.-.+||+|+|-+||+|.+..+|..||--.++.. .....+.++++..|+.+|+.|+||||+++|++|.+..+  +-+|+
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            4457899999999999999999988875443332 23445667899999999999999999999999987655  88999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc--eeecccCCccEEecC-CCceEEecccccccccCCC
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG--VVYRDLKPENVLVRD-DGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g--IVHRDLKPeNILl~~-~g~vKL~DFGlA~~~~~~~  487 (730)
                      |++..|+|..|+.++  +.++...++.|++||+.||.|||++.  |||||||-+||+|+. -|.|||+|+|||+...   
T Consensus       123 EL~TSGtLr~Y~kk~--~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r---  197 (632)
T KOG0584|consen  123 ELFTSGTLREYRKKH--RRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLR---  197 (632)
T ss_pred             ecccCCcHHHHHHHh--ccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhh---
Confidence            999999999999987  67889999999999999999999987  999999999999986 4999999999995321   


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 ..+..
T Consensus       198 ---------------------------------------------------------------------------~s~ak  202 (632)
T KOG0584|consen  198 ---------------------------------------------------------------------------KSHAK  202 (632)
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       01223


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeee-ecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV-VGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i-~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      +.+|||+|||||+.. +.|+..+||||||+.+.||+|+..||.--.+.+++++- ..+..+-....--..++++||.+||
T Consensus       203 svIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl  281 (632)
T KOG0584|consen  203 SVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPEVREFIEKCL  281 (632)
T ss_pred             eeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHh
Confidence            579999999999998 77999999999999999999999999887777776654 4444332223344779999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      .. ..+|++    +.|||+||||+.-
T Consensus       282 ~~-~~~R~s----a~eLL~d~Ff~~d  302 (632)
T KOG0584|consen  282 AT-KSERLS----AKELLKDPFFDED  302 (632)
T ss_pred             cC-chhccC----HHHHhhChhhccc
Confidence            99 999999    7999999999864

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=4.8e-37  Score=318.77  Aligned_cols=253  Identities=21%  Similarity=0.311  Sum_probs=196.9

Q ss_pred             eEEEeEEccCCcEEEEEEEEC---CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc-----
Q 004790          333 FRLLKRLGCGDIGSVYLSELS---STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR-----  404 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~---~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~-----  404 (730)
                      |++.+.||+|+||.||+|.+.   .+++.||||++.... ......+.+++|+++|+.++||||+++++++....     
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   79 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADI-FSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRL   79 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEecccc-CChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcc
Confidence            677899999999999999864   357899999996543 23345667889999999999999999999875432     


Q ss_pred             -eeeEEeeecCCCCcccccccc----CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccc
Q 004790          405 -FSCLVMEYCPGGDLHTLRQRQ----PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL  479 (730)
Q Consensus       405 -~l~LVmEy~~GGsL~~ll~~~----~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGl  479 (730)
                       ..++++||+.+|+|..++...    ....+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~  159 (273)
T cd05074          80 PIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGL  159 (273)
T ss_pred             cceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECcccc
Confidence             347899999999998765422    112578889999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccc
Q 004790          480 SLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVA  559 (730)
Q Consensus       480 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (730)
                      ++.......                                                                       
T Consensus       160 ~~~~~~~~~-----------------------------------------------------------------------  168 (273)
T cd05074         160 SKKIYSGDY-----------------------------------------------------------------------  168 (273)
T ss_pred             cccccCCcc-----------------------------------------------------------------------
Confidence            854210000                                                                       


Q ss_pred             ccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhH
Q 004790          560 EPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYAS  638 (730)
Q Consensus       560 e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~  638 (730)
                         ........+++.|++||.+.+..++.++|||||||++|||++ |+.||.+.+.......+... .........+..+
T Consensus       169 ---~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  244 (273)
T cd05074         169 ---YRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKG-NRLKQPPDCLEDV  244 (273)
T ss_pred             ---eecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHcC-CcCCCCCCCCHHH
Confidence               000012245678999999999999999999999999999998 99999876554333323222 1223334567899


Q ss_pred             HHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          639 RDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       639 ~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .+|+.+||..+|++||++    .++++
T Consensus       245 ~~l~~~~l~~~p~~Rps~----~~~~~  267 (273)
T cd05074         245 YELMCQCWSPEPKCRPSF----QHLRD  267 (273)
T ss_pred             HHHHHHHcCCChhhCcCH----HHHHH
Confidence            999999999999999995    55543

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=4.9e-37  Score=315.39  Aligned_cols=236  Identities=23%  Similarity=0.278  Sum_probs=187.4

Q ss_pred             eEEccCCcEEEEEEEECCCC----------eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          337 KRLGCGDIGSVYLSELSSTR----------CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~----------~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      +.||+|+||.||+|.+..++          ..+++|++.....    ....+.+|+.+|+.++||||+++++++.. ...
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~   75 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHR----DSLAFFETASLMSQLSHKHLVKLYGVCVR-DEN   75 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchh----hHHHHHHHHHHHHcCCCcchhheeeEEec-CCc
Confidence            46999999999999998776          3478887754421    14667889999999999999999999887 778


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC-------ceEEecccc
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG-------HIMLSDFDL  479 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g-------~vKL~DFGl  479 (730)
                      |+||||+++|+|..++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++       .+||+|||+
T Consensus        76 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~  154 (259)
T cd05037          76 IMVEEYVKFGPLDVFLHREK-NNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGI  154 (259)
T ss_pred             EEEEEcCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCc
Confidence            99999999999999887653 2688999999999999999999999999999999999999888       899999998


Q ss_pred             cccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccc
Q 004790          480 SLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVA  559 (730)
Q Consensus       480 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (730)
                      +.....                                                                          
T Consensus       155 a~~~~~--------------------------------------------------------------------------  160 (259)
T cd05037         155 PITVLS--------------------------------------------------------------------------  160 (259)
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            843100                                                                          


Q ss_pred             ccccccccccccCcccCChhhhccC--CCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCCh
Q 004790          560 EPTAARSMSFVGTHEYLAPEIIKGE--GHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSY  636 (730)
Q Consensus       560 e~~~~~~~s~vGT~~Y~APEvl~g~--~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~  636 (730)
                            .....++..|+|||++.+.  .++.++|||||||++|||++ |..||.......... ........+.  ....
T Consensus       161 ------~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~-~~~~~~~~~~--~~~~  231 (259)
T cd05037         161 ------REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKER-FYQDQHRLPM--PDCA  231 (259)
T ss_pred             ------ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHH-HHhcCCCCCC--CCch
Confidence                  0012567789999999887  78999999999999999999 688887654322211 1111112222  1237


Q ss_pred             hHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          637 ASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       637 ~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .+.+||.+||..+|.+||++    .++++
T Consensus       232 ~~~~li~~~l~~~p~~Rpt~----~~il~  256 (259)
T cd05037         232 ELANLINQCWTYDPTKRPSF----RAILR  256 (259)
T ss_pred             HHHHHHHHHhccChhhCCCH----HHHHH
Confidence            88999999999999999994    56553

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=1.1e-36  Score=322.67  Aligned_cols=259  Identities=17%  Similarity=0.235  Sum_probs=188.5

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCC---CeEEEEEEeehhhhh--hHHH------HHHHHHHHHHHHhcCCCCCccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSST---RCYFAMKVMDKASLA--SRKK------LTRAQTEREILQLLDHPFLPTL  396 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t---~~~vAvKvi~k~~~~--~~~~------~~~~~~E~~IL~~L~HPnIV~L  396 (730)
                      +..++|++.+.||+|+||+||+|++..+   +..+|+|+.......  .+..      ......+...+..++|+||+++
T Consensus         9 i~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~   88 (294)
T PHA02882          9 ITGKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKY   88 (294)
T ss_pred             cCCCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcE
Confidence            4457899999999999999999999887   667888865422211  1000      0111223334556799999999


Q ss_pred             cccccccc----eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCce
Q 004790          397 YTHFETDR----FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHI  472 (730)
Q Consensus       397 ~~~f~~~~----~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~v  472 (730)
                      ++++....    ..|++||++ ..++..++...  ..+++..++.++.||+.||.|||+++|+||||||+|||++.++.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~  165 (294)
T PHA02882         89 YGCGSFKRCRMYYRFILLEKL-VENTKEIFKRI--KCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRG  165 (294)
T ss_pred             EEeeeEecCCceEEEEEEehh-ccCHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcE
Confidence            98765433    457888887 45666655543  346788899999999999999999999999999999999999999


Q ss_pred             EEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCC
Q 004790          473 MLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSS  552 (730)
Q Consensus       473 KL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (730)
                      +|+|||+|+.+........                                                             
T Consensus       166 ~l~DFGla~~~~~~~~~~~-------------------------------------------------------------  184 (294)
T PHA02882        166 YIIDYGIASHFIIHGKHIE-------------------------------------------------------------  184 (294)
T ss_pred             EEEEcCCceeeccCCcccc-------------------------------------------------------------
Confidence            9999999865321000000                                                             


Q ss_pred             CCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccce---------eeeec
Q 004790          553 TLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---------FNVVG  623 (730)
Q Consensus       553 ~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l---------~~i~~  623 (730)
                              ..........||+.|+|||++.+..++.++|||||||+||||++|+.||.+......+         .++..
T Consensus       185 --------~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~  256 (294)
T PHA02882        185 --------YSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHE  256 (294)
T ss_pred             --------cccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHhhh
Confidence                    0000112347999999999999999999999999999999999999999887433222         12222


Q ss_pred             ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       624 ~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      ....+   ...+..+.++++.|+..+|++||++    ++|++
T Consensus       257 ~~~~~---~~~~~~~~~~~~~~~~~~~~~rp~~----~~l~~  291 (294)
T PHA02882        257 GKIKI---KNANKFIYDFIECVTKLSYEEKPDY----DALIK  291 (294)
T ss_pred             hhhcc---CCCCHHHHHHHHHHHhCCCCCCCCH----HHHHH
Confidence            22222   2457889999999999999999994    66653

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.2e-38  Score=359.01  Aligned_cols=257  Identities=26%  Similarity=0.375  Sum_probs=219.9

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF  400 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f  400 (730)
                      ..+...+.++.+.||+|+||+||+|+..+     ....||||.++...  +.+....|+||+++|..|+|||||+|++.+
T Consensus       481 ~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a--~~~~~~dF~REaeLla~l~H~nIVrLlGVC  558 (774)
T KOG1026|consen  481 LEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKA--ENQARQDFRREAELLAELQHPNIVRLLGVC  558 (774)
T ss_pred             eEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccc--cHHHHHHHHHHHHHHHhccCCCeEEEEEEE
Confidence            34667788999999999999999998643     35679999997653  334667899999999999999999999999


Q ss_pred             cccceeeEEeeecCCCCccccccccC--------C----CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC
Q 004790          401 ETDRFSCLVMEYCPGGDLHTLRQRQP--------G----KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD  468 (730)
Q Consensus       401 ~~~~~l~LVmEy~~GGsL~~ll~~~~--------~----~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~  468 (730)
                      ..++-+|||+|||..|||+.+|....        +    ..|+..+...++.||+.|++||-++.+|||||-..|+||.+
T Consensus       559 ~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge  638 (774)
T KOG1026|consen  559 REGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGE  638 (774)
T ss_pred             ccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceecc
Confidence            99999999999999999999876431        1    23788899999999999999999999999999999999999


Q ss_pred             CCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCC
Q 004790          469 DGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELG  548 (730)
Q Consensus       469 ~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (730)
                      +-.|||+||||++..           +..|+.+-                                              
T Consensus       639 ~l~VKIsDfGLsRdi-----------YssDYYk~----------------------------------------------  661 (774)
T KOG1026|consen  639 NLVVKISDFGLSRDI-----------YSSDYYKV----------------------------------------------  661 (774)
T ss_pred             ceEEEecccccchhh-----------hhhhhhcc----------------------------------------------
Confidence            999999999999642           12222110                                              


Q ss_pred             CCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHh-hCCCCCCCCCCccceeeeeccccc
Q 004790          549 LPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLFNVVGQQLR  627 (730)
Q Consensus       549 ~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELl-tG~~PF~g~~~~~~l~~i~~~~~~  627 (730)
                                      +. ...-...||+||.|....|+.++||||+||+|||++ +|+.||.+..+.+.+..|..+++ 
T Consensus       662 ----------------~~-~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g~l-  723 (774)
T KOG1026|consen  662 ----------------RG-NTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAGQL-  723 (774)
T ss_pred             ----------------cC-CceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcCCc-
Confidence                            00 012356799999999999999999999999999999 69999999999999999888887 


Q ss_pred             CCCCCCCChhHHHHHHhhhcCCCCCcCCchhc
Q 004790          628 FPDSPATSYASRDLIRGLLVKEPQHRLGVKRG  659 (730)
Q Consensus       628 ~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~  659 (730)
                      ++-+..++.++.+|+..||+.+|.+||+|++.
T Consensus       724 L~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI  755 (774)
T KOG1026|consen  724 LSCPENCPTEVYSLMLECWNENPKRRPSFKEI  755 (774)
T ss_pred             ccCCCCCCHHHHHHHHHHhhcCcccCCCHHHH
Confidence            78888999999999999999999999998543

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.6e-39  Score=323.85  Aligned_cols=264  Identities=26%  Similarity=0.379  Sum_probs=207.9

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc------
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET------  402 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~------  402 (730)
                      ..+.|.-+.+||+|.||.||+|+.+.+++.||+|++-... .....-....+|++||+.|+|+|++.|++.+.+      
T Consensus        15 ~~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmen-eKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~   93 (376)
T KOG0669|consen   15 EVSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMEN-EKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTN   93 (376)
T ss_pred             cchHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhc-cccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcc
Confidence            4467888899999999999999999999999998653211 111223456789999999999999999988743      


Q ss_pred             --cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          403 --DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       403 --~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                        ...+||||.+| .-||..++... ..+|+...++.++.+++.||.|+|...|+|||+|++|+||+.+|.+||+|||++
T Consensus        94 r~r~t~ylVf~~c-ehDLaGlLsn~-~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGla  171 (376)
T KOG0669|consen   94 RDRATFYLVFDFC-EHDLAGLLSNR-KVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLA  171 (376)
T ss_pred             cccceeeeeHHHh-hhhHHHHhcCc-cccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeeccccc
Confidence              34589999999 66888877653 357999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +.+..+....                                                                      
T Consensus       172 r~fs~~~n~~----------------------------------------------------------------------  181 (376)
T KOG0669|consen  172 RAFSTSKNVV----------------------------------------------------------------------  181 (376)
T ss_pred             cceecccccC----------------------------------------------------------------------
Confidence            6542111100                                                                      


Q ss_pred             cccccccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeee--ccccc----------
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV--GQQLR----------  627 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~--~~~~~----------  627 (730)
                        ..+.+..+-|.+|++||.|.|.. |+...|||..|||+.||++|.+.|.+..+..++..|-  .+...          
T Consensus       182 --kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~l  259 (376)
T KOG0669|consen  182 --KPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNL  259 (376)
T ss_pred             --CCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccc
Confidence              00122347799999999999875 8999999999999999999999999987766654321  01000          


Q ss_pred             ----------CCC-----------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          628 ----------FPD-----------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       628 ----------~p~-----------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                                .|.           .-..++++.||+.+||..||.+|+.    ++++++|.||-.
T Consensus       260 pL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~----ad~alnh~~F~k  320 (376)
T KOG0669|consen  260 PLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRID----ADQALNHDFFWK  320 (376)
T ss_pred             hHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcc----hHhhhchhhhhc
Confidence                      000           0112457789999999999999999    899999999964

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=6.4e-37  Score=321.06  Aligned_cols=238  Identities=22%  Similarity=0.284  Sum_probs=187.3

Q ss_pred             EEccCCcEEEEEEEECCC------------------------CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCC
Q 004790          338 RLGCGDIGSVYLSELSST------------------------RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFL  393 (730)
Q Consensus       338 ~LG~G~fG~Vyla~~~~t------------------------~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnI  393 (730)
                      .||+|+||.||+|.+..+                        ...||+|++....   ......+.+|+.+++.++||||
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~---~~~~~~~~~~~~~~~~l~h~ni   78 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSH---RDIALAFFETASLMSQVSHIHL   78 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHH---HHHHHHHHHHHHHHhcCCCCCe
Confidence            599999999999985321                        2358999986542   2334567789999999999999


Q ss_pred             ccccccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC---
Q 004790          394 PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG---  470 (730)
Q Consensus       394 V~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g---  470 (730)
                      +++++++..+...||||||+++|+|..++.+. .+.+++..+..++.||+.||+|||++||+||||||+|||++..+   
T Consensus        79 v~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~  157 (274)
T cd05076          79 AFVHGVCVRGSENIMVEEFVEHGPLDVCLRKE-KGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAE  157 (274)
T ss_pred             eeEEEEEEeCCceEEEEecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCccc
Confidence            99999999999999999999999998877543 35688999999999999999999999999999999999997644   


Q ss_pred             ----ceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCcc
Q 004790          471 ----HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSE  546 (730)
Q Consensus       471 ----~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (730)
                          .+||+|||++....                                                              
T Consensus       158 ~~~~~~kl~d~g~~~~~~--------------------------------------------------------------  175 (274)
T cd05076         158 GTSPFIKLSDPGVSFTAL--------------------------------------------------------------  175 (274)
T ss_pred             CccceeeecCCccccccc--------------------------------------------------------------
Confidence                48999999873210                                                              


Q ss_pred             CCCCCCCCcccccccccccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHh-hCCCCCCCCCCccceeeeecc
Q 004790          547 LGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLFNVVGQ  624 (730)
Q Consensus       547 ~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELl-tG~~PF~g~~~~~~l~~i~~~  624 (730)
                                        ......++..|+|||++.+ ..++.++|+|||||++|||+ +|+.||.+...... ......
T Consensus       176 ------------------~~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~-~~~~~~  236 (274)
T cd05076         176 ------------------SREERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEK-ERFYEK  236 (274)
T ss_pred             ------------------cccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHH-HHHHHh
Confidence                              0001246788999999976 45899999999999999995 79999987544322 222223


Q ss_pred             cccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       625 ~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      ...++.  ..+..+.+||++||..+|++||+    +.+++++
T Consensus       237 ~~~~~~--~~~~~~~~li~~cl~~~p~~Rps----~~~il~~  272 (274)
T cd05076         237 KHRLPE--PSCKELATLISQCLTYEPTQRPS----FRTILRD  272 (274)
T ss_pred             ccCCCC--CCChHHHHHHHHHcccChhhCcC----HHHHHHh
Confidence            333332  34568899999999999999999    5777653

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=100.00  E-value=8.4e-38  Score=339.36  Aligned_cols=277  Identities=27%  Similarity=0.402  Sum_probs=221.3

Q ss_pred             CCCCCchhhHHh-hhhhcCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHH
Q 004790          308 HKGNDPRWKAIL-AIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ  386 (730)
Q Consensus       308 ~~~~~p~~~~~~-~~~~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~  386 (730)
                      ..+...+|...- .+.++-+++..++|.+....|+|-|++|.+|.+...+..||||+|+....-.    ..=++|++||+
T Consensus       408 ~~~L~DNWdDaEGYYrv~igE~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~----KtGl~EleiLk  483 (752)
T KOG0670|consen  408 NPGLQDNWDDAEGYYRVRIGELLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMH----KTGLKELEILK  483 (752)
T ss_pred             CCccccCcccccceEEEehhhhhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHh----hhhhHHHHHHH
Confidence            344555676543 4667788889999999999999999999999999999999999998764322    33467999999


Q ss_pred             hcC------CCCCccccccccccceeeEEeeecCCCCccccccccC-CCCccHHHHHHhHHHHHHHHHHhHhcceeeccc
Q 004790          387 LLD------HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQP-GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDL  459 (730)
Q Consensus       387 ~L~------HPnIV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~-~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDL  459 (730)
                      .|+      .-|+++|+-+|...+++|||+|-+ ..+|..++.+.. .-.|...+++.|+.|++.||..|...||+|-||
T Consensus       484 KL~~AD~Edk~Hclrl~r~F~hknHLClVFE~L-slNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDI  562 (752)
T KOG0670|consen  484 KLNDADPEDKFHCLRLFRHFKHKNHLCLVFEPL-SLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADI  562 (752)
T ss_pred             HhhccCchhhhHHHHHHHHhhhcceeEEEehhh-hchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeeccc
Confidence            994      458999999999999999999998 778888887652 346888999999999999999999999999999


Q ss_pred             CCccEEecCC-CceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCccccccccc
Q 004790          460 KPENVLVRDD-GHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKK  538 (730)
Q Consensus       460 KPeNILl~~~-g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~  538 (730)
                      ||+|||++.. ..+||||||.|....                     .                                
T Consensus       563 KPDNiLVNE~k~iLKLCDfGSA~~~~---------------------e--------------------------------  589 (752)
T KOG0670|consen  563 KPDNILVNESKNILKLCDFGSASFAS---------------------E--------------------------------  589 (752)
T ss_pred             CccceEeccCcceeeeccCccccccc---------------------c--------------------------------
Confidence            9999999875 578999999883210                     0                                


Q ss_pred             ccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccce
Q 004790          539 KTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL  618 (730)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l  618 (730)
                                               ..-+.+.-+..|+|||+|+|..|+...|+||+||+||||+||+..|.|.++..++
T Consensus       590 -------------------------neitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~ML  644 (752)
T KOG0670|consen  590 -------------------------NEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQML  644 (752)
T ss_pred             -------------------------ccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHH
Confidence                                     0111234567799999999999999999999999999999999999998776665


Q ss_pred             eeeeccccc---------------------------------------------------------CCC-CCCCChhHHH
Q 004790          619 FNVVGQQLR---------------------------------------------------------FPD-SPATSYASRD  640 (730)
Q Consensus       619 ~~i~~~~~~---------------------------------------------------------~p~-~~~~s~~~~d  640 (730)
                      .-.+.-.-.                                                         +|. .+..-..++|
T Consensus       645 rl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rd  724 (752)
T KOG0670|consen  645 RLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRD  724 (752)
T ss_pred             HHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHH
Confidence            211100000                                                         000 0111236789


Q ss_pred             HHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          641 LIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||.+||..||++|++    +.++|+||||.+
T Consensus       725 LLdkml~LdP~KRit----~nqAL~HpFi~~  751 (752)
T KOG0670|consen  725 LLDKMLILDPEKRIT----VNQALKHPFITE  751 (752)
T ss_pred             HHHHHhccChhhcCC----HHHHhcCCcccC
Confidence            999999999999999    689999999974

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-36  Score=332.78  Aligned_cols=252  Identities=27%  Similarity=0.330  Sum_probs=197.1

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc-eee
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR-FSC  407 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~-~l~  407 (730)
                      ..++|.--..||+|+||.||+|...++ ..||||.+.......   ...+++|+++|..++|||+|+|++||.+.+ ..+
T Consensus        73 AT~~Fs~~~~ig~Ggfg~VYkG~l~~~-~~vAVK~~~~~~~~~---~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~  148 (361)
T KOG1187|consen   73 ATNNFSESNLIGEGGFGTVYKGVLSDG-TVVAVKRLSSNSGQG---EREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRL  148 (361)
T ss_pred             HHhCCchhcceecCCCeEEEEEEECCC-CEEEEEEecCCCCcc---hhHHHHHHHHHhcCCCcCcccEEEEEecCCceEE
Confidence            457899999999999999999999875 789999886654321   344999999999999999999999999888 599


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc---eeecccCCccEEecCCCceEEeccccccccc
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG---VVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g---IVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      ||+|||++|+|.+++.......+++.....|+.+++.||+|||...   |||||||+.|||||.++..||+|||||+...
T Consensus       149 LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~  228 (361)
T KOG1187|consen  149 LVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGP  228 (361)
T ss_pred             EEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCC
Confidence            9999999999999887754337899999999999999999999854   9999999999999999999999999994310


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                            ..
T Consensus       229 ~~----------------------------------------------------------------------------~~  232 (361)
T KOG1187|consen  229 EG----------------------------------------------------------------------------DT  232 (361)
T ss_pred             cc----------------------------------------------------------------------------cc
Confidence            00                                                                            00


Q ss_pred             ccccc-ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc--c-------------ceeeeecccccC
Q 004790          565 RSMSF-VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR--A-------------TLFNVVGQQLRF  628 (730)
Q Consensus       565 ~~~s~-vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~--~-------------~l~~i~~~~~~~  628 (730)
                      ...+. .||.+|+|||++.....+.++||||||++|.||++|+.+.......  .             .+..++...+..
T Consensus       233 ~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~  312 (361)
T KOG1187|consen  233 SVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKE  312 (361)
T ss_pred             ceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccC
Confidence            00111 6999999999999988999999999999999999999888753211  1             111222222110


Q ss_pred             CCCCCCC--hh---HHHHHHhhhcCCCCCcCCchhcHHHH
Q 004790          629 PDSPATS--YA---SRDLIRGLLVKEPQHRLGVKRGATEI  663 (730)
Q Consensus       629 p~~~~~s--~~---~~dLI~~lL~~DP~~R~t~~~~a~el  663 (730)
                         ....  .+   +..+..+|+..+|.+||++.+.+..+
T Consensus       313 ---~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L  349 (361)
T KOG1187|consen  313 ---GEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKEL  349 (361)
T ss_pred             ---CCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHH
Confidence               1112  22   34678899999999999975544333

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=1.7e-36  Score=315.84  Aligned_cols=247  Identities=19%  Similarity=0.277  Sum_probs=187.2

Q ss_pred             eEEccCCcEEEEEEEECCC--CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecC
Q 004790          337 KRLGCGDIGSVYLSELSST--RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCP  414 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t--~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~  414 (730)
                      +.||+|+||+||+++....  ...+++|.+.....  ......+.+|+.+++.++||||+++++.|.+....|+||||++
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   78 (268)
T cd05086           1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANAS--SKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCE   78 (268)
T ss_pred             CcCCCCcCceEEEEEEEcCCCcceEEEEEecCCCC--hHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCC
Confidence            3699999999999976433  33466777654321  2345678899999999999999999999999999999999999


Q ss_pred             CCCccccccccC--CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccccc
Q 004790          415 GGDLHTLRQRQP--GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT  492 (730)
Q Consensus       415 GGsL~~ll~~~~--~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~  492 (730)
                      +|+|..++.+..  ...+++..++.++.||+.||+|||+++|+||||||+|||++.++++||+|||++.......     
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~-----  153 (268)
T cd05086          79 LGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKED-----  153 (268)
T ss_pred             CCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccccCcch-----
Confidence            999998876532  2346777888999999999999999999999999999999999999999999873210000     


Q ss_pred             CCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccC
Q 004790          493 SSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT  572 (730)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT  572 (730)
                                                                                           ........+|+
T Consensus       154 ---------------------------------------------------------------------~~~~~~~~~~~  164 (268)
T cd05086         154 ---------------------------------------------------------------------YIETEDDKCVP  164 (268)
T ss_pred             ---------------------------------------------------------------------hhhcccCCcCc
Confidence                                                                                 00001134688


Q ss_pred             cccCChhhhccC-------CCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeeccc-ccC--C-CCCCCChhHHH
Q 004790          573 HEYLAPEIIKGE-------GHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQ-LRF--P-DSPATSYASRD  640 (730)
Q Consensus       573 ~~Y~APEvl~g~-------~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~-~~~--p-~~~~~s~~~~d  640 (730)
                      ..|+|||++...       .++.++|||||||++|||++ |..||......+.+..++.+. ...  | ....++..+.+
T Consensus       165 ~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (268)
T cd05086         165 LRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYE  244 (268)
T ss_pred             ccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHH
Confidence            999999998532       35678999999999999996 677887665544444433322 111  1 12346788899


Q ss_pred             HHHhhhcCCCCCcCCchhcHHHHH
Q 004790          641 LIRGLLVKEPQHRLGVKRGATEIK  664 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~~~a~elL  664 (730)
                      +|+.|| .+|++||++    ++++
T Consensus       245 l~~~c~-~~P~~Rp~~----~~i~  263 (268)
T cd05086         245 VLQFCW-LSPEKRATA----EEVH  263 (268)
T ss_pred             HHHHHh-hCcccCCCH----HHHH
Confidence            999999 679999994    5554

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-37  Score=345.64  Aligned_cols=244  Identities=31%  Similarity=0.453  Sum_probs=194.9

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc------e
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR------F  405 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~------~  405 (730)
                      -+..-+.||+|+||.||+++++.+|+.||||.+++..  .....++..+|++||++|+|||||++++.-++..      .
T Consensus        14 ~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~--~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~   91 (732)
T KOG4250|consen   14 LWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKES--SLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRL   91 (732)
T ss_pred             ceeehhhhcCCccceeeeecccccccchhHHhhhhhc--ccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCccccc
Confidence            3666788999999999999999999999999998765  2344567789999999999999999999877654      4


Q ss_pred             eeEEeeecCCCCccccccccC-CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC--CC--ceEEeccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQP-GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD--DG--HIMLSDFDLS  480 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~-~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~--~g--~vKL~DFGlA  480 (730)
                      ..+|||||.||||+.++++-. ...|+|.+.+.++..+..||.|||++|||||||||.||++-.  +|  ..||+|||.|
T Consensus        92 ~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~A  171 (732)
T KOG4250|consen   92 PVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAA  171 (732)
T ss_pred             ceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeeccccc
Confidence            679999999999999887642 357999999999999999999999999999999999999843  34  3699999999


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +....                                                                           
T Consensus       172 rel~d---------------------------------------------------------------------------  176 (732)
T KOG4250|consen  172 RELDD---------------------------------------------------------------------------  176 (732)
T ss_pred             ccCCC---------------------------------------------------------------------------
Confidence            64311                                                                           


Q ss_pred             cccccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCc----cceeeeec------------
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR----ATLFNVVG------------  623 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~----~~l~~i~~------------  623 (730)
                        ...-.+++||+.|++||++.. ..|+..+|.|||||++|+++||..||......    ...+.++.            
T Consensus       177 --~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~~~~~~~~~~tkkp~~v~i~~~~  254 (732)
T KOG4250|consen  177 --NSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGPKNNKEIMWHIITKKPSGVAIGAQE  254 (732)
T ss_pred             --CCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCccccchhhhhhhccCCCceeEeeec
Confidence              012247899999999999995 77899999999999999999999999754332    22322221            


Q ss_pred             ---cc----ccCCCCCCCChhH----HHHHHhhhcCCCCCcC
Q 004790          624 ---QQ----LRFPDSPATSYAS----RDLIRGLLVKEPQHRL  654 (730)
Q Consensus       624 ---~~----~~~p~~~~~s~~~----~dLI~~lL~~DP~~R~  654 (730)
                         ++    ..+|.+...+..+    -.++..+|..+|++|.
T Consensus       255 ~eNgpv~~s~~lP~p~~Ls~~l~~~~~kwLa~~L~~~~~~~~  296 (732)
T KOG4250|consen  255 EENGPVEWSSTLPQPNHLSRGLATRLTKWLASMLEWNPRKRG  296 (732)
T ss_pred             ccCCceeeeccCCCcccccHHHHhhhhHHHHHHHhhhHHHhC
Confidence               11    2234433344333    4688999999999999

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=100.00  E-value=3e-36  Score=348.45  Aligned_cols=261  Identities=19%  Similarity=0.237  Sum_probs=181.0

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCC----CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc---
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSST----RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF---  400 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t----~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f---  400 (730)
                      +..++|++.+.||+|+||.||+|++..+    +..||+|.+.......     ....|  .++...+.++..++..|   
T Consensus       129 ~~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e-----~~~~e--~l~~~~~~~~~~~~~~~~~~  201 (566)
T PLN03225        129 FKKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVE-----IWMNE--RVRRACPNSCADFVYGFLEP  201 (566)
T ss_pred             CccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhH-----HHHHH--HHHhhchhhHHHHHHhhhcc
Confidence            4568999999999999999999999988    8899999886432111     01111  12222333333333322   


Q ss_pred             ---cccceeeEEeeecCCCCccccccccCC------------------CCccHHHHHHhHHHHHHHHHHhHhcceeeccc
Q 004790          401 ---ETDRFSCLVMEYCPGGDLHTLRQRQPG------------------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDL  459 (730)
Q Consensus       401 ---~~~~~l~LVmEy~~GGsL~~ll~~~~~------------------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDL  459 (730)
                         ..+..+||||||+.+++|.+++.....                  ....+..++.++.||+.||+|||++|||||||
T Consensus       202 ~~~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDL  281 (566)
T PLN03225        202 VSSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDV  281 (566)
T ss_pred             cccccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcC
Confidence               456789999999999999887764311                  11224456789999999999999999999999


Q ss_pred             CCccEEecC-CCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCccccccccc
Q 004790          460 KPENVLVRD-DGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKK  538 (730)
Q Consensus       460 KPeNILl~~-~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~  538 (730)
                      ||+|||++. ++.+||+|||+|+.+...                                                    
T Consensus       282 KP~NILl~~~~~~~KL~DFGlA~~l~~~----------------------------------------------------  309 (566)
T PLN03225        282 KPQNIIFSEGSGSFKIIDLGAAADLRVG----------------------------------------------------  309 (566)
T ss_pred             CHHHEEEeCCCCcEEEEeCCCccccccc----------------------------------------------------
Confidence            999999986 589999999998532100                                                    


Q ss_pred             ccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCC----------------------CCCcceeechh
Q 004790          539 KTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEG----------------------HGSAVDWWTFG  596 (730)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~----------------------~~~~sDIWSLG  596 (730)
                                             .......++||+.|+|||++....                      ++.++||||||
T Consensus       310 -----------------------~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlG  366 (566)
T PLN03225        310 -----------------------INYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAG  366 (566)
T ss_pred             -----------------------cccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHH
Confidence                                   000112458899999999775332                      34467999999


Q ss_pred             HHHHHHhhCCCCCCCCCCccceeeeec--------------ccc------cCCCCCCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          597 IFLHELLYGKTPFKGSGNRATLFNVVG--------------QQL------RFPDSPATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       597 ~iLyELltG~~PF~g~~~~~~l~~i~~--------------~~~------~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      |+||||+++..++...  ...+..++.              ...      .+........+++|||.+||.+||++||+ 
T Consensus       367 viL~el~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~t-  443 (566)
T PLN03225        367 LIFLQMAFPNLRSDSN--LIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRIS-  443 (566)
T ss_pred             HHHHHHHhCcCCCchH--HHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcccCCC-
Confidence            9999999977665421  111111110              000      00000112334669999999999999999 


Q ss_pred             hhcHHHHHcCCCCCCCCcch
Q 004790          657 KRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       657 ~~~a~elL~HPfF~~v~w~~  676 (730)
                         ++++|+||||++.++..
T Consensus       444 ---a~e~L~Hpff~~~~~~~  460 (566)
T PLN03225        444 ---AKAALAHPYFDREGLLG  460 (566)
T ss_pred             ---HHHHhCCcCcCCCCccc
Confidence               79999999999987753

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-37  Score=323.08  Aligned_cols=256  Identities=26%  Similarity=0.428  Sum_probs=214.9

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc------
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD------  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~------  403 (730)
                      ..+|.-++.+|.|.- .|..+.+.-+++.||+|.+... ........++++|..++..++|+||++++.+|.-.      
T Consensus        16 ~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~p-f~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~   93 (369)
T KOG0665|consen   16 PKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRP-FQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEF   93 (369)
T ss_pred             eeeeeeecccCCCCc-eEEecchhhccCceehhhhcCc-cccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHH
Confidence            467888999999999 8888999889999999988766 44455667899999999999999999999999643      


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ...|+||||| ..+|..+++.    .++-...++++.|++.|+.|||+.||+||||||+||++..++.+||.|||+|+.-
T Consensus        94 ~e~y~v~e~m-~~nl~~vi~~----elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e  168 (369)
T KOG0665|consen   94 QEVYLVMELM-DANLCQVILM----ELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTE  168 (369)
T ss_pred             HhHHHHHHhh-hhHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhccc
Confidence            4679999999 7889888773    5788899999999999999999999999999999999999999999999999431


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      .                                                                             ..
T Consensus       169 ~-----------------------------------------------------------------------------~~  171 (369)
T KOG0665|consen  169 D-----------------------------------------------------------------------------TD  171 (369)
T ss_pred             C-----------------------------------------------------------------------------cc
Confidence            0                                                                             11


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-------------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-------------------  624 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-------------------  624 (730)
                      .+.+-++.|..|+|||++.+.+|...+||||+||++.||++|...|.|.+..+++.+++..                   
T Consensus       172 ~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~y  251 (369)
T KOG0665|consen  172 FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNY  251 (369)
T ss_pred             cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHH
Confidence            2344579999999999999999999999999999999999999999988766666544310                   


Q ss_pred             ------------cccCCCC---------CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          625 ------------QLRFPDS---------PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       625 ------------~~~~p~~---------~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                                  .-.||+.         +.....++||+.+||..||++|++    ++++|+||||+  -|.
T Consensus       252 v~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Ris----v~daL~HPY~~--vw~  317 (369)
T KOG0665|consen  252 VENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRIS----VDDALRHPYIK--VWY  317 (369)
T ss_pred             hhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhccc----HHHHhcCCeee--eec
Confidence                        0112321         233457899999999999999999    79999999999  564

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-34  Score=313.97  Aligned_cols=141  Identities=29%  Similarity=0.459  Sum_probs=123.2

Q ss_pred             hcCCcccc-CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc---C--C---CCC
Q 004790          323 ARDGILGM-SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL---D--H---PFL  393 (730)
Q Consensus       323 ~~~~~l~~-~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L---~--H---PnI  393 (730)
                      ++.|.+.. .+|.+.++||.|-|++||+|.+..+.++||||+.+...    ...+.+..|+++|+++   +  |   .+|
T Consensus        69 V~IGD~F~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAq----hYtEaAlDEIklL~~v~~~Dp~~~~~~~V  144 (590)
T KOG1290|consen   69 VRIGDVFNGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQ----HYTEAALDEIKLLQQVREGDPNDPGKKCV  144 (590)
T ss_pred             eeccccccCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhh----HHHHHHHHHHHHHHHHHhcCCCCCCCcee
Confidence            34454444 89999999999999999999999999999999997653    4456678899999987   2  3   379


Q ss_pred             cccccccc----ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecC
Q 004790          394 PTLYTHFE----TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRD  468 (730)
Q Consensus       394 V~L~~~f~----~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~  468 (730)
                      |+|+++|.    .+.++|||+|++ |.+|..+|++...+.++...++.|++|||.||.|||. .||||-||||+|||+..
T Consensus       145 V~LlD~FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPENvLl~~  223 (590)
T KOG1290|consen  145 VQLLDHFKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPENVLLCS  223 (590)
T ss_pred             eeeeccceecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcceeeeec
Confidence            99999996    467999999999 9999999998888899999999999999999999995 79999999999999954

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-35  Score=350.32  Aligned_cols=253  Identities=24%  Similarity=0.371  Sum_probs=213.8

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCC-----eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTR-----CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~-----~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      .....++++.||+|.||.||.|......     ..||||.+.+.  .+.+....+.+|..+|+.++|||||+|++++-+.
T Consensus       690 ~~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~--~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~  767 (1025)
T KOG1095|consen  690 PRKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRL--SSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDS  767 (1025)
T ss_pred             ChhheEeeeeeccccccceEEEEEecCCCCccceEEEEEecccc--CCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCC
Confidence            3678899999999999999999886542     24899988764  3456677899999999999999999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccC-----CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQP-----GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFD  478 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~-----~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFG  478 (730)
                      ...+|++|||+||||..+|+..+     ...++......++.||+.|+.||+++++|||||-..|+||+....+||+|||
T Consensus       768 ~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFG  847 (1025)
T KOG1095|consen  768 GPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFG  847 (1025)
T ss_pred             CCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccc
Confidence            99999999999999999988652     3457888899999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccc
Q 004790          479 LSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELV  558 (730)
Q Consensus       479 lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (730)
                      ||+.+-           +.++.+.                                 .                      
T Consensus       848 lArDiy-----------~~~yyr~---------------------------------~----------------------  861 (1025)
T KOG1095|consen  848 LARDIY-----------DKDYYRK---------------------------------H----------------------  861 (1025)
T ss_pred             hhHhhh-----------hchheec---------------------------------c----------------------
Confidence            996321           1111000                                 0                      


Q ss_pred             cccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChh
Q 004790          559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYA  637 (730)
Q Consensus       559 ~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~  637 (730)
                         .  +   ..-...|||||.++...++.++|||||||+|||+++ |.+||.+.++.+.+..++.+. +++.+..++..
T Consensus       862 ---~--~---a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~gg-RL~~P~~CP~~  932 (1025)
T KOG1095|consen  862 ---G--E---AMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGG-RLDPPSYCPEK  932 (1025)
T ss_pred             ---C--c---cccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCC-ccCCCCCCChH
Confidence               0  0   012346999999999999999999999999999996 999999999988887666665 77777899999


Q ss_pred             HHHHHHhhhcCCCCCcCCchh
Q 004790          638 SRDLIRGLLVKEPQHRLGVKR  658 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~~  658 (730)
                      +.+||.+||..+|++||++..
T Consensus       933 ly~lM~~CW~~~pe~RP~F~~  953 (1025)
T KOG1095|consen  933 LYQLMLQCWKHDPEDRPSFRT  953 (1025)
T ss_pred             HHHHHHHHccCChhhCccHHH
Confidence            999999999999999999743

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=100.00  E-value=1.3e-34  Score=329.20  Aligned_cols=264  Identities=20%  Similarity=0.247  Sum_probs=191.4

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEEC----------------CCCeEEEEEEeehhhhhhHH-----------HHHHHHH
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELS----------------STRCYFAMKVMDKASLASRK-----------KLTRAQT  380 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~----------------~t~~~vAvKvi~k~~~~~~~-----------~~~~~~~  380 (730)
                      +..++|++.++||+|+||+||+|.+.                ..++.||||.+........+           ..+....
T Consensus       142 ~~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~v  221 (507)
T PLN03224        142 WSSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMV  221 (507)
T ss_pred             ccccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHH
Confidence            45789999999999999999999752                23467999998643211111           1122345


Q ss_pred             HHHHHHhcCCCCC-----ccccccccc--------cceeeEEeeecCCCCccccccccC---------------------
Q 004790          381 EREILQLLDHPFL-----PTLYTHFET--------DRFSCLVMEYCPGGDLHTLRQRQP---------------------  426 (730)
Q Consensus       381 E~~IL~~L~HPnI-----V~L~~~f~~--------~~~l~LVmEy~~GGsL~~ll~~~~---------------------  426 (730)
                      |+.++.+++|.++     +.++++|..        +...||||||+++++|.++++...                     
T Consensus       222 E~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~  301 (507)
T PLN03224        222 EAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNM  301 (507)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhc
Confidence            7777777766554     667776642        356899999999999988776421                     


Q ss_pred             -CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCC
Q 004790          427 -GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPG  505 (730)
Q Consensus       427 -~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~  505 (730)
                       ...+++..++.++.||+.||.|||+++|+||||||+|||++.++.+||+|||++.......                  
T Consensus       302 ~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~------------------  363 (507)
T PLN03224        302 PQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGI------------------  363 (507)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccccccCC------------------
Confidence             1123566788899999999999999999999999999999999999999999984321000                  


Q ss_pred             CCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCC
Q 004790          506 GSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEG  585 (730)
Q Consensus       506 ~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~  585 (730)
                                                                               ........+|+.|+|||++....
T Consensus       364 ---------------------------------------------------------~~~~~~g~~tp~Y~aPE~l~~~~  386 (507)
T PLN03224        364 ---------------------------------------------------------NFNPLYGMLDPRYSPPEELVMPQ  386 (507)
T ss_pred             ---------------------------------------------------------ccCccccCCCcceeChhhhcCCC
Confidence                                                                     00001124589999999986432


Q ss_pred             --------------------CC--CcceeechhHHHHHHhhCCC-CCCCCCCc-----------cceeeeecccccCCCC
Q 004790          586 --------------------HG--SAVDWWTFGIFLHELLYGKT-PFKGSGNR-----------ATLFNVVGQQLRFPDS  631 (730)
Q Consensus       586 --------------------~~--~~sDIWSLG~iLyELltG~~-PF~g~~~~-----------~~l~~i~~~~~~~p~~  631 (730)
                                          |+  ...||||+||++|+|++|.. ||.+....           ..+..+....+.++..
T Consensus       387 ~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~~~~  466 (507)
T PLN03224        387 SCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDFSLL  466 (507)
T ss_pred             CCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCcccc
Confidence                                22  34799999999999999985 77542111           1111223345566666


Q ss_pred             CCCChhHHHHHHhhhcCCC---CCcCCchhcHHHHHcCCCCC
Q 004790          632 PATSYASRDLIRGLLVKEP---QHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       632 ~~~s~~~~dLI~~lL~~DP---~~R~t~~~~a~elL~HPfF~  670 (730)
                      ...+..++|||.+||.++|   .+|++    ++|+|+||||.
T Consensus       467 d~~s~~~~dLi~~LL~~~~~~~~~RlS----a~eaL~Hp~f~  504 (507)
T PLN03224        467 DRNKEAGWDLACKLITKRDQANRGRLS----VGQALSHRFFL  504 (507)
T ss_pred             cccChHHHHHHHHHhccCCCCcccCCC----HHHHhCCCCcC
Confidence            6788999999999999876   68999    79999999996

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=100.00  E-value=9.3e-35  Score=291.83  Aligned_cols=242  Identities=46%  Similarity=0.761  Sum_probs=200.2

Q ss_pred             CcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCccccc
Q 004790          343 DIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLR  422 (730)
Q Consensus       343 ~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL~~ll  422 (730)
                      +||.||+|.+..+++.+|+|++........  ...+.+|+++++.++|+||+++++++..+...|+||||+++++|..++
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~   78 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKK--RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLL   78 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccH--HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHH
Confidence            589999999999999999999976543321  567889999999999999999999999999999999999999999987


Q ss_pred             cccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCC
Q 004790          423 QRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRR  502 (730)
Q Consensus       423 ~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~  502 (730)
                      ....  .+++..+..++.+++.+|.|||+.||+|+||+|.||+++.++.++|+|||++.......               
T Consensus        79 ~~~~--~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~---------------  141 (244)
T smart00220       79 KKRG--RLSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG---------------  141 (244)
T ss_pred             Hhcc--CCCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeecccc---------------
Confidence            7652  38899999999999999999999999999999999999999999999999985421000               


Q ss_pred             CCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhc
Q 004790          503 GPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIK  582 (730)
Q Consensus       503 ~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~  582 (730)
                                                                                    ......|+..|++||.+.
T Consensus       142 --------------------------------------------------------------~~~~~~~~~~~~~pE~~~  159 (244)
T smart00220      142 --------------------------------------------------------------LLTTFVGTPEYMAPEVLL  159 (244)
T ss_pred             --------------------------------------------------------------ccccccCCcCCCCHHHHc
Confidence                                                                          011236788999999999


Q ss_pred             cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-cccCCCCCC-CChhHHHHHHhhhcCCCCCcCCchhcH
Q 004790          583 GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-QLRFPDSPA-TSYASRDLIRGLLVKEPQHRLGVKRGA  660 (730)
Q Consensus       583 g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-~~~~p~~~~-~s~~~~dLI~~lL~~DP~~R~t~~~~a  660 (730)
                      +..++.++|+|+||+++|+|++|..||........+...+.. ......... ++.++.++|.+||..+|++||+    +
T Consensus       160 ~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~----~  235 (244)
T smart00220      160 GKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLT----A  235 (244)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccC----H
Confidence            888999999999999999999999999874333333333222 222221111 7789999999999999999999    7


Q ss_pred             HHHHcCCCC
Q 004790          661 TEIKQHPFF  669 (730)
Q Consensus       661 ~elL~HPfF  669 (730)
                      .++++||||
T Consensus       236 ~~~~~~~~~  244 (244)
T smart00220      236 EEALQHPFF  244 (244)
T ss_pred             HHHhhCCCC
Confidence            999999998

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-36  Score=307.95  Aligned_cols=261  Identities=23%  Similarity=0.334  Sum_probs=207.4

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHH-hcCCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ-LLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~-~L~HPnIV~L~~~f~~~~~l  406 (730)
                      +...+.+-+..||.|+||+|++-.++.+|+..|||.|+....  .+.+.++..|.+... .-+.||||++|+....++..
T Consensus        61 F~~~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~--~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdc  138 (361)
T KOG1006|consen   61 FTSDNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNI--EKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDC  138 (361)
T ss_pred             cccchHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccc--hHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCce
Confidence            344566777889999999999999999999999999976544  355567888887654 45899999999999999999


Q ss_pred             eEEeeecCCCCccccccc---cCCCCccHHHHHHhHHHHHHHHHHhH-hcceeecccCCccEEecCCCceEEeccccccc
Q 004790          407 CLVMEYCPGGDLHTLRQR---QPGKHFSEYAARFYAAEVLLALEYLH-MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~---~~~~~lse~~a~~~~~qIl~AL~yLH-~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      |+.||+| ..+|..+..+   -....++|...-.+....+.||+||. .+.|||||+||+|||++..|.|||||||++-.
T Consensus       139 WiCMELM-d~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFGIcGq  217 (361)
T KOG1006|consen  139 WICMELM-DISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFGICGQ  217 (361)
T ss_pred             eeeHHHH-hhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeecccchHh
Confidence            9999999 6677554322   12357899999999999999999997 57899999999999999999999999999743


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      +..+.                                                  .+                       
T Consensus       218 Lv~Si--------------------------------------------------Ak-----------------------  224 (361)
T KOG1006|consen  218 LVDSI--------------------------------------------------AK-----------------------  224 (361)
T ss_pred             HHHHH--------------------------------------------------Hh-----------------------
Confidence            21100                                                  00                       


Q ss_pred             cccccccccCcccCChhhhcc--CCCCCcceeechhHHHHHHhhCCCCCCCCCC-ccceeeeecccccC-CCC---CCCC
Q 004790          563 AARSMSFVGTHEYLAPEIIKG--EGHGSAVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNVVGQQLRF-PDS---PATS  635 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g--~~~~~~sDIWSLG~iLyELltG~~PF~g~~~-~~~l~~i~~~~~~~-p~~---~~~s  635 (730)
                          +.-+|-..|||||.|..  .+|+-++|+||||++|||+.||+.||.+-+. .+++..++.+..+. ..+   ...+
T Consensus       225 ----T~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~Vv~gdpp~l~~~~~~~~~s  300 (361)
T KOG1006|consen  225 ----TVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQVVIGDPPILLFDKECVHYS  300 (361)
T ss_pred             ----hhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHHHHHHHHHHHcCCCCeecCcccccccC
Confidence                11268889999999964  4689999999999999999999999987654 34444444433221 111   3468


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ..++++|.-||.+|-.+||.    ..+++.|||++..
T Consensus       301 ~~~~~fintCl~Kd~~~Rpk----y~~Lk~~~fyr~y  333 (361)
T KOG1006|consen  301 FSMVRFINTCLIKDRSDRPK----YDDLKKFPFYRMY  333 (361)
T ss_pred             HHHHHHHHHHhhcccccCcc----hhhhhcCchhhhh
Confidence            88999999999999999999    5899999999853

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-35  Score=302.07  Aligned_cols=260  Identities=25%  Similarity=0.371  Sum_probs=208.5

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc-----ceee
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD-----RFSC  407 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~-----~~l~  407 (730)
                      .+--+-||.|+||.||.+.+..+|+.||+|.+.. .+.+-...+++.+|+.+|.-++|.|++.+++..+..     ..+|
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pn-vfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiY  133 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPN-VFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELY  133 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcch-HHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHH
Confidence            3444679999999999999999999999998853 333444557788999999999999999999887753     3578


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +|+|+| ..||+.++-.-  ..++.+.++-+++||+.||+|||+.||.||||||.|+|++.+..+||||||||+..... 
T Consensus       134 V~TELm-QSDLHKIIVSP--Q~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d-  209 (449)
T KOG0664|consen  134 VLTELM-QSDLHKIIVSP--QALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQR-  209 (449)
T ss_pred             HHHHHH-HhhhhheeccC--CCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEecccccccccchh-
Confidence            999999 78999877653  57999999999999999999999999999999999999999999999999999531100 


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                .....+
T Consensus       210 --------------------------------------------------------------------------~~~hMT  215 (449)
T KOG0664|consen  210 --------------------------------------------------------------------------DRLNMT  215 (449)
T ss_pred             --------------------------------------------------------------------------hhhhhH
Confidence                                                                                      011222


Q ss_pred             ccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeee-----------------------c
Q 004790          568 SFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV-----------------------G  623 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~-----------------------~  623 (730)
                      .-+-|..|+|||++.|.. |+.++||||+|||+.||+-.+..|...+..+++.-|.                       .
T Consensus       216 qEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR  295 (449)
T KOG0664|consen  216 HEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLR  295 (449)
T ss_pred             HHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhc
Confidence            347799999999999986 7899999999999999999999999887665553332                       1


Q ss_pred             ccccCCCC---------CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          624 QQLRFPDS---------PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       624 ~~~~~p~~---------~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      ...+.|..         .....++.+++.+||..||++|++    .++.++|+|.......
T Consensus       296 ~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris----~~~A~~~~~~~e~R~r  352 (449)
T KOG0664|consen  296 AGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRIS----VEEALQHRYLEEGRLR  352 (449)
T ss_pred             cCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCccccc----Hhhhccccccccccee
Confidence            22222221         122346778999999999999999    5899999999876543

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=2.6e-35  Score=294.09  Aligned_cols=252  Identities=26%  Similarity=0.469  Sum_probs=205.2

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccc--ccee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFET--DRFS  406 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~--~~~l  406 (730)
                      .++|++++++|+|.|+.||.|....++..++||+++.-      ....+.+|+.||+.|. ||||++|++...+  .+..
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV------kkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~Sktp  110 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPV------KKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTP  110 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechH------HHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCc
Confidence            47899999999999999999999989999999998643      3356889999999995 9999999999976  4567


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC-CceEEecccccccccC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD-GHIMLSDFDLSLRCAV  485 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~-g~vKL~DFGlA~~~~~  485 (730)
                      .||+||+++.|...+..     .|+...+++|+.|++.||.|+|++||+|||+||.|++||.. -.++|+|+|||....+
T Consensus       111 aLiFE~v~n~Dfk~ly~-----tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp  185 (338)
T KOG0668|consen  111 SLIFEYVNNTDFKQLYP-----TLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHP  185 (338)
T ss_pred             hhHhhhhccccHHHHhh-----hhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCC
Confidence            89999999988877653     58889999999999999999999999999999999999874 5799999999965432


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ...                                                                             
T Consensus       186 ~~e-----------------------------------------------------------------------------  188 (338)
T KOG0668|consen  186 GKE-----------------------------------------------------------------------------  188 (338)
T ss_pred             Cce-----------------------------------------------------------------------------
Confidence            111                                                                             


Q ss_pred             ccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCC-CCCCCccceeeeec--------------------
Q 004790          566 SMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPF-KGSGNRATLFNVVG--------------------  623 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF-~g~~~~~~l~~i~~--------------------  623 (730)
                      ..-.+.+..|--||+|..-+ |+..-|+|||||+|..|+..+-|| .|.++.+++.+|..                    
T Consensus       189 YnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp  268 (338)
T KOG0668|consen  189 YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDP  268 (338)
T ss_pred             eeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCCh
Confidence            01125667788999997654 799999999999999999988876 56677666654431                    


Q ss_pred             -------cccc-----C--CC-CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          624 -------QQLR-----F--PD-SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       624 -------~~~~-----~--p~-~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                             +-.+     |  +. ....++++.|||.++|.+|-++|+|    |.|++.||||..+.
T Consensus       269 ~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlT----akEam~HpyF~~~~  329 (338)
T KOG0668|consen  269 QFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLT----AKEAMAHPYFAPVR  329 (338)
T ss_pred             hHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccc----hHHHhcCchHHHHH
Confidence                   0000     1  01 1234689999999999999999999    89999999998654

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=9.2e-34  Score=312.71  Aligned_cols=250  Identities=25%  Similarity=0.360  Sum_probs=208.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCC----CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSST----RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t----~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      +.-+...+.+.||.|-||.||.|.....    .--||||+.+++.-.  +..+.+..|.-|++.++|||||+|++++.+.
T Consensus       386 l~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~--d~tekflqEa~iMrnfdHphIikLIGv~~e~  463 (974)
T KOG4257|consen  386 LRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTP--DDTEKFLQEASIMRNFDHPHIIKLIGVCVEQ  463 (974)
T ss_pred             eehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCCh--hhHHHHHHHHHHHHhCCCcchhheeeeeecc
Confidence            4445566678899999999999987433    335899999764322  3356789999999999999999999999865


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                       ..|||||+++-|.|..+++... ..++......|++||+.||.|||+..+|||||-..|||+....-|||+||||++.+
T Consensus       464 -P~WivmEL~~~GELr~yLq~nk-~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~  541 (974)
T KOG4257|consen  464 -PMWIVMELAPLGELREYLQQNK-DSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYL  541 (974)
T ss_pred             -ceeEEEecccchhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhhhc
Confidence             4789999999999999998763 57888999999999999999999999999999999999999999999999999764


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..+.- +                                                                         
T Consensus       542 ed~~y-Y-------------------------------------------------------------------------  547 (974)
T KOG4257|consen  542 EDDAY-Y-------------------------------------------------------------------------  547 (974)
T ss_pred             cccch-h-------------------------------------------------------------------------
Confidence            21100 0                                                                         


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHh-hCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELl-tG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                       ......-..-|||||-+.-..++.++|+|.|||.+||++ .|.-||.|-.+.+.+-.+-++. +.|-++.++..+..|+
T Consensus       548 -kaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGe-RlP~P~nCPp~LYslm  625 (974)
T KOG4257|consen  548 -KASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGE-RLPCPPNCPPALYSLM  625 (974)
T ss_pred             -hccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCC-CCCCCCCCChHHHHHH
Confidence             000011245699999999999999999999999999998 6999999999988887665443 6677788999999999


Q ss_pred             HhhhcCCCCCcCCch
Q 004790          643 RGLLVKEPQHRLGVK  657 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~  657 (730)
                      .+||++||.+||.+.
T Consensus       626 skcWayeP~kRPrft  640 (974)
T KOG4257|consen  626 SKCWAYEPSKRPRFT  640 (974)
T ss_pred             HHHhccCcccCCcHH
Confidence            999999999999984

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-34  Score=321.51  Aligned_cols=253  Identities=22%  Similarity=0.319  Sum_probs=213.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCC-C--eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSST-R--CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t-~--~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      |..++..+.++||+|.||+|++|.|... |  -.||||+++...+..  .+..+.+|+.+|..|+|||+++||+...+ .
T Consensus       107 Ipee~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~--~mddflrEas~M~~L~H~hliRLyGvVl~-q  183 (1039)
T KOG0199|consen  107 IPEEQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNA--IMDDFLREASHMLKLQHPHLIRLYGVVLD-Q  183 (1039)
T ss_pred             ccHHHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccch--hHHHHHHHHHHHHhccCcceeEEeeeecc-c
Confidence            4556778889999999999999988643 3  358999998765543  66789999999999999999999999988 7


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+.||||++++|+|.+.|.+.....|.......|+.||+.|+.||..+++|||||-..|||+-..-.|||+||||.+.+.
T Consensus       184 p~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg  263 (1039)
T KOG0199|consen  184 PAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALG  263 (1039)
T ss_pred             hhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccC
Confidence            78899999999999998877666789999999999999999999999999999999999999988899999999986542


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      .....+.                  .+                                                +    
T Consensus       264 ~ned~Yv------------------m~------------------------------------------------p----  273 (1039)
T KOG0199|consen  264 ENEDMYV------------------MA------------------------------------------------P----  273 (1039)
T ss_pred             CCCcceE------------------ec------------------------------------------------C----
Confidence            2111100                  00                                                0    


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHh-hCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELl-tG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                         ..--...|+|||.|+...++.++|+|++||+||||+ +|..||.|......+.+|- ..-+++....++.++.+++.
T Consensus       274 ---~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD-~~erLpRPk~csedIY~imk  349 (1039)
T KOG0199|consen  274 ---QRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNID-AGERLPRPKYCSEDIYQIMK  349 (1039)
T ss_pred             ---CCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhcc-ccccCCCCCCChHHHHHHHH
Confidence               001234699999999999999999999999999999 5999999988877777766 45566777789999999999


Q ss_pred             hhhcCCCCCcCCch
Q 004790          644 GLLVKEPQHRLGVK  657 (730)
Q Consensus       644 ~lL~~DP~~R~t~~  657 (730)
                      .||..+|++||+|-
T Consensus       350 ~cWah~paDRptFs  363 (1039)
T KOG0199|consen  350 NCWAHNPADRPTFS  363 (1039)
T ss_pred             HhccCCccccccHH
Confidence            99999999999973

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-34  Score=322.87  Aligned_cols=254  Identities=24%  Similarity=0.335  Sum_probs=218.5

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCe---EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRC---YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~---~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      ++..+...+.++||.|.||.||+|+++..++   .||||.++...  .+++...++.|+.||-+++||||++|.++....
T Consensus       625 EId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gy--tekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks  702 (996)
T KOG0196|consen  625 EIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGY--TEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKS  702 (996)
T ss_pred             hcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCc--cHHHHhhhhhhhhhcccCCCCcEEEEEEEEecC
Confidence            4666788899999999999999999987764   69999996543  345667899999999999999999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      +-+.||+|||++|+|..+|..+. +.|+..+..-+++.|+.|+.||-++|+|||||-..|||++.+-.+|++||||++.+
T Consensus       703 ~PvMIiTEyMENGsLDsFLR~~D-GqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRvl  781 (996)
T KOG0196|consen  703 KPVMIITEYMENGSLDSFLRQND-GQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRVL  781 (996)
T ss_pred             ceeEEEhhhhhCCcHHHHHhhcC-CceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEeccccceeec
Confidence            99999999999999999988765 55999999999999999999999999999999999999999999999999999754


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..++....+          ..||                                                         
T Consensus       782 edd~~~~yt----------t~GG---------------------------------------------------------  794 (996)
T KOG0196|consen  782 EDDPEAAYT----------TLGG---------------------------------------------------------  794 (996)
T ss_pred             ccCCCcccc----------ccCC---------------------------------------------------------
Confidence            322210000          0000                                                         


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHh-hCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELl-tG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                            --...|.|||.|....++.++|+||+||+|||.+ +|..||-...+++.+.. +.+.+++|.+.+++..+..|+
T Consensus       795 ------KIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIka-Ie~gyRLPpPmDCP~aL~qLM  867 (996)
T KOG0196|consen  795 ------KIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKA-IEQGYRLPPPMDCPAALYQLM  867 (996)
T ss_pred             ------ccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHHHHHH-HHhccCCCCCCCCcHHHHHHH
Confidence                  1135799999999999999999999999999988 79999999888877744 567789999999999999999


Q ss_pred             HhhhcCCCCCcCCch
Q 004790          643 RGLLVKEPQHRLGVK  657 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~  657 (730)
                      ..||++|-.+||.+.
T Consensus       868 ldCWqkdR~~RP~F~  882 (996)
T KOG0196|consen  868 LDCWQKDRNRRPKFA  882 (996)
T ss_pred             HHHHHHHhhcCCCHH
Confidence            999999999999973

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-34  Score=319.76  Aligned_cols=256  Identities=29%  Similarity=0.476  Sum_probs=222.2

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      .+|++++++|.|+||.||+++++.+++..|+|+++...   ...+.-++.|+-+++.++|||||-+++.+-....+|++|
T Consensus        15 ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep---~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM   91 (829)
T KOG0576|consen   15 DDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEP---GDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM   91 (829)
T ss_pred             cchhheeeecCCcccchhhhcccccCchhhheeeeccC---CccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence            68999999999999999999999999999999997542   245566889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |||.||+|.+..+..  +.++|.++.+..++.+.+|+|||+.|-+|||||-.|||+++.|.+||+|||.+..+.      
T Consensus        92 EycgggslQdiy~~T--gplselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqit------  163 (829)
T KOG0576|consen   92 EYCGGGSLQDIYHVT--GPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQIT------  163 (829)
T ss_pred             EecCCCcccceeeec--ccchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhhhh------
Confidence            999999999876665  789999999999999999999999999999999999999999999999999873321      


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                            .+.++..+|+
T Consensus       164 ----------------------------------------------------------------------ati~Krksfi  173 (829)
T KOG0576|consen  164 ----------------------------------------------------------------------ATIAKRKSFI  173 (829)
T ss_pred             ----------------------------------------------------------------------hhhhhhhccc
Confidence                                                                                  1234556899


Q ss_pred             cCcccCChhhh---ccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc---cCCCCCCCChhHHHHHHh
Q 004790          571 GTHEYLAPEII---KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL---RFPDSPATSYASRDLIRG  644 (730)
Q Consensus       571 GT~~Y~APEvl---~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~---~~p~~~~~s~~~~dLI~~  644 (730)
                      ||+.|||||+-   +..+|...+|+|++|++..||---++|......+..++-..+..+   ...+...++..+.+|++.
T Consensus       174 GtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~  253 (829)
T KOG0576|consen  174 GTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKG  253 (829)
T ss_pred             CCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHHhhccCCCCCcccCCccchHHHHHHHHH
Confidence            99999999986   456799999999999999999988888776666666655444333   334456778899999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      +|.++|.+||+    ++.+|+|||...
T Consensus       254 altknpKkRpt----aeklL~h~fvs~  276 (829)
T KOG0576|consen  254 ALTKNPKKRPT----AEKLLQHPFVSQ  276 (829)
T ss_pred             HhcCCCccCCC----hhhheeceeecc
Confidence            99999999999    789999999875

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-34  Score=324.57  Aligned_cols=250  Identities=28%  Similarity=0.390  Sum_probs=196.2

Q ss_pred             eEEEeEEccCCcEE-EEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEEe
Q 004790          333 FRLLKRLGCGDIGS-VYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       333 y~il~~LG~G~fG~-Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      |.--+.+|.|+-|+ ||+|...  ++.||||.+-.      +....+++|+..|+.. +|||||++|+.-++.+++||+.
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye--~R~VAVKrll~------e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIal  582 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYE--GREVAVKRLLE------EFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIAL  582 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeC--CceehHHHHhh------HhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEe
Confidence            44456789999885 7999885  45899998743      3455689999999998 7999999999999999999999


Q ss_pred             eecCCCCcccccccc-CC-CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---C--CceEEecccccccc
Q 004790          411 EYCPGGDLHTLRQRQ-PG-KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---D--GHIMLSDFDLSLRC  483 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~-~~-~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~--g~vKL~DFGlA~~~  483 (730)
                      |.| .-+|.+++... .. ........+..+.|++.||++||+.+||||||||+||||..   +  ..++|+|||+++++
T Consensus       583 ELC-~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl  661 (903)
T KOG1027|consen  583 ELC-ACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKL  661 (903)
T ss_pred             hHh-hhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEeccccccccc
Confidence            999 77999988763 11 11111456788999999999999999999999999999976   3  46899999999775


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      .......                                                                         
T Consensus       662 ~~~~sS~-------------------------------------------------------------------------  668 (903)
T KOG1027|consen  662 AGGKSSF-------------------------------------------------------------------------  668 (903)
T ss_pred             CCCcchh-------------------------------------------------------------------------
Confidence            4322111                                                                         


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhC-CCCCCCCCCccceeeeecccccCCCC-CCCChhHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYG-KTPFKGSGNRATLFNVVGQQLRFPDS-PATSYASRDL  641 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG-~~PF~g~~~~~~l~~i~~~~~~~p~~-~~~s~~~~dL  641 (730)
                      .+.....||-+|+|||++....-..++|||||||++|+.++| ..||...-  +.-.+|+.+.+..-.- +....+++||
T Consensus       669 ~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~--~R~~NIl~~~~~L~~L~~~~d~eA~dL  746 (903)
T KOG1027|consen  669 SRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSL--ERQANILTGNYTLVHLEPLPDCEAKDL  746 (903)
T ss_pred             hcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchH--HhhhhhhcCccceeeeccCchHHHHHH
Confidence            012235799999999999999989999999999999999986 99997542  3334566555433211 1112289999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      |.+||..||..||+    |.++|.||||=
T Consensus       747 I~~ml~~dP~~RPs----a~~VL~HPlFW  771 (903)
T KOG1027|consen  747 ISRMLNPDPQLRPS----ATDVLNHPLFW  771 (903)
T ss_pred             HHHhcCCCcccCCC----HHHHhCCCccC
Confidence            99999999999999    89999999994

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.8e-33  Score=303.47  Aligned_cols=253  Identities=24%  Similarity=0.340  Sum_probs=205.6

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +.-+...+.++||+|-||.|.+++... +..||+|.++....  ......+.+|+++|.+|+||||+.|++++..++.+|
T Consensus       535 fPRs~L~~~ekiGeGqFGEVhLCeveg-~lkVAVK~Lr~~a~--~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePic  611 (807)
T KOG1094|consen  535 FPRSRLRFKEKIGEGQFGEVHLCEVEG-PLKVAVKILRPDAT--KNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLC  611 (807)
T ss_pred             cchhheehhhhhcCcccceeEEEEecC-ceEEEEeecCcccc--hhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchH
Confidence            334567889999999999999999865 57899999976532  234567899999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +|||||+.|+|.+++.++....+.......++.||+.|++||.+.++|||||.+.|+|++.++++||+|||+++.+-.  
T Consensus       612 mI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lys--  689 (807)
T KOG1094|consen  612 MITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYS--  689 (807)
T ss_pred             HHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCccccccccc--
Confidence            999999999999998876333334455566999999999999999999999999999999999999999999964310  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                       |.-+.+|                                                       .
T Consensus       690 -----------------g~yy~vq-------------------------------------------------------g  697 (807)
T KOG1094|consen  690 -----------------GDYYRVQ-------------------------------------------------------G  697 (807)
T ss_pred             -----------------CCceeee-------------------------------------------------------c
Confidence                             1111111                                                       1


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHh--hCCCCCCCCCCccceeee---e---cccccCCCCCCCChhHH
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL--YGKTPFKGSGNRATLFNV---V---GQQLRFPDSPATSYASR  639 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELl--tG~~PF~g~~~~~~l~~i---~---~~~~~~p~~~~~s~~~~  639 (730)
                      .++-...|||+|.|.-..++.++|+|+||++|||++  +...||....+++...+.   .   ..+.-.+.++.+++.+-
T Consensus       698 r~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~ly  777 (807)
T KOG1094|consen  698 RAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLY  777 (807)
T ss_pred             ceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHH
Confidence            246678899999999999999999999999999987  689999877666555432   1   12223344567899999


Q ss_pred             HHHHhhhcCCCCCcCCch
Q 004790          640 DLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~  657 (730)
                      .||.+||..|-.+||+++
T Consensus       778 elml~Cw~~es~~RPsFe  795 (807)
T KOG1094|consen  778 ELMLRCWRRESEQRPSFE  795 (807)
T ss_pred             HHHHHHhchhhhcCCCHH
Confidence            999999999999999963

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-33  Score=308.30  Aligned_cols=252  Identities=19%  Similarity=0.323  Sum_probs=216.7

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      +++.-.+..+-.+||-|.||.||.|.|+.....||||.++.+.+    .++.+..|..+|+.++|||+|+|+++|..+.-
T Consensus       262 WEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtM----eveEFLkEAAvMKeikHpNLVqLLGVCT~EpP  337 (1157)
T KOG4278|consen  262 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM----EVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPP  337 (1157)
T ss_pred             hhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcch----hHHHHHHHHHHHHhhcCccHHHHhhhhccCCC
Confidence            44555677788999999999999999999999999999976553    45678899999999999999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|||+|||..|+|.+++.+.....++.-....++.||..|++||..+++|||||-..|.|+.++..||++||||++.+..
T Consensus       338 FYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtg  417 (1157)
T KOG4278|consen  338 FYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTG  417 (1157)
T ss_pred             eEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhcC
Confidence            99999999999999999887667788888888999999999999999999999999999999999999999999976532


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      +                    .|.+..+                                                    
T Consensus       418 D--------------------TYTAHAG----------------------------------------------------  425 (1157)
T KOG4278|consen  418 D--------------------TYTAHAG----------------------------------------------------  425 (1157)
T ss_pred             C--------------------ceecccC----------------------------------------------------
Confidence            1                    1111000                                                    


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHh-hCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELl-tG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~  644 (730)
                         .--..-|.|||-|..+.++.++|+|+|||+|||+. +|..||.|.+ ..+.+..+...+++.....++.....|++.
T Consensus       426 ---AKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGid-lSqVY~LLEkgyRM~~PeGCPpkVYeLMra  501 (1157)
T KOG4278|consen  426 ---AKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGID-LSQVYGLLEKGYRMDGPEGCPPKVYELMRA  501 (1157)
T ss_pred             ---ccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCcc-HHHHHHHHhccccccCCCCCCHHHHHHHHH
Confidence               01134689999999999999999999999999999 5999999964 445556677788888888999999999999


Q ss_pred             hhcCCCCCcCCch
Q 004790          645 LLVKEPQHRLGVK  657 (730)
Q Consensus       645 lL~~DP~~R~t~~  657 (730)
                      ||.+.|.+||++.
T Consensus       502 CW~WsPsDRPsFa  514 (1157)
T KOG4278|consen  502 CWNWSPSDRPSFA  514 (1157)
T ss_pred             HhcCCcccCccHH
Confidence            9999999999973

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=100.00  E-value=4.2e-33  Score=298.81  Aligned_cols=300  Identities=25%  Similarity=0.361  Sum_probs=208.2

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECC---CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccc
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSS---TRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDR  404 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~---t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~  404 (730)
                      ..+.|.++.+||.|+|++||++.+..   .+++||+|.+....     ...++.+|+++|..+ .+.||+.+.++|..++
T Consensus        34 ~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts-----~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd  108 (418)
T KOG1167|consen   34 ISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS-----SPSRILNELEMLYRLGGSDNIIKLNGCFRNND  108 (418)
T ss_pred             hhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc-----CchHHHHHHHHHHHhccchhhhcchhhhccCC
Confidence            35789999999999999999999877   78899999987653     345688999999988 7999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-CCceEEecccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-DGHIMLSDFDLSLRC  483 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-~g~vKL~DFGlA~~~  483 (730)
                      ..++||||++..+..+++.     .++...++.|++.++.||.++|.+|||||||||.|+|++. .++-.|+|||||.+.
T Consensus       109 ~v~ivlp~~~H~~f~~l~~-----~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~  183 (418)
T KOG1167|consen  109 QVAIVLPYFEHDRFRDLYR-----SLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRY  183 (418)
T ss_pred             eeEEEecccCccCHHHHHh-----cCCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHHH
Confidence            9999999999888888764     3678899999999999999999999999999999999975 588999999999742


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ...........+.........|....        ...|.+.                .++.   +     ......+...
T Consensus       184 d~~~~~~~s~~~~~~~~~~~~g~~~~--------~~~~~~~----------------~~p~---g-----~~~~~~~~r~  231 (418)
T KOG1167|consen  184 DGYQQTEHSRSYSGRHATPAMGKDVH--------CQSVATA----------------SKPA---G-----YYRRCNDGRP  231 (418)
T ss_pred             HhhhhhhhhhhhhcccCCccccCccc--------ccccccc----------------cCCC---C-----ceeccCCCcc
Confidence            11110000000000000000000000        0000000                0000   0     0000001111


Q ss_pred             ccccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCc-cce-----------------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATL-----------------------  618 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l-----------------------  618 (730)
                      .......||++|+|||++..-+ .+.++||||.|||+.-+++++.||....+. +.+                       
T Consensus       232 ~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~  311 (418)
T KOG1167|consen  232 SERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRIL  311 (418)
T ss_pred             ceecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCcee
Confidence            2233568999999999997665 689999999999999999999999643111 000                       


Q ss_pred             -ee------e---------e--c-----cc--ccC-CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          619 -FN------V---------V--G-----QQ--LRF-PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       619 -~~------i---------~--~-----~~--~~~-p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                       ..      +         +  .     .+  ... ......+..+-||+.+||..||.+|++    |+++|+||||...
T Consensus       312 l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRit----AEeALkHpFF~~~  387 (418)
T KOG1167|consen  312 LWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRIT----AEDALKHPFFDEA  387 (418)
T ss_pred             eeccccccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHHccCChhhccc----HHHHhcCcCCcch
Confidence             00      0         0  0     00  000 011223447789999999999999999    8999999999976


Q ss_pred             Cc
Q 004790          673 NW  674 (730)
Q Consensus       673 ~w  674 (730)
                      +-
T Consensus       388 ~~  389 (418)
T KOG1167|consen  388 DR  389 (418)
T ss_pred             hh
Confidence            53

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-33  Score=307.31  Aligned_cols=203  Identities=31%  Similarity=0.482  Sum_probs=178.2

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHH-----HHHHHHHHHHHHhcC---CCCCccccccc
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKK-----LTRAQTEREILQLLD---HPFLPTLYTHF  400 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~-----~~~~~~E~~IL~~L~---HPnIV~L~~~f  400 (730)
                      ...+|..++.||.|+||.|++|.++.....|+||.|.|..+.....     +-.+--|+.||..|+   |+||++++++|
T Consensus       559 k~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfF  638 (772)
T KOG1152|consen  559 KFSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFF  638 (772)
T ss_pred             ccccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhhee
Confidence            3467999999999999999999999999999999998876654332     334567999999997   99999999999


Q ss_pred             cccceeeEEeeec-CCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccc
Q 004790          401 ETDRFSCLVMEYC-PGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL  479 (730)
Q Consensus       401 ~~~~~l~LVmEy~-~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGl  479 (730)
                      ++++++||+||-- +|.||++++...  ..++|..++.|++||+.|+++||+.||||||||-|||+++.+|-+||+|||.
T Consensus       639 Eddd~yyl~te~hg~gIDLFd~IE~k--p~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgs  716 (772)
T KOG1152|consen  639 EDDDYYYLETEVHGEGIDLFDFIEFK--PRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGS  716 (772)
T ss_pred             ecCCeeEEEecCCCCCcchhhhhhcc--CccchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEEEeeccc
Confidence            9999999999965 456899999887  5799999999999999999999999999999999999999999999999998


Q ss_pred             cccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccc
Q 004790          480 SLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVA  559 (730)
Q Consensus       480 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (730)
                      |...                 +.|                                                        
T Consensus       717 aa~~-----------------ksg--------------------------------------------------------  723 (772)
T KOG1152|consen  717 AAYT-----------------KSG--------------------------------------------------------  723 (772)
T ss_pred             hhhh-----------------cCC--------------------------------------------------------
Confidence            7321                 000                                                        


Q ss_pred             ccccccccccccCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCC
Q 004790          560 EPTAARSMSFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKG  611 (730)
Q Consensus       560 e~~~~~~~s~vGT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g  611 (730)
                           ..-.|+||..|.|||+|.|..| +..-|||+||++||.+++...||+.
T Consensus       724 -----pfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyyn  771 (772)
T KOG1152|consen  724 -----PFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYYN  771 (772)
T ss_pred             -----CcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCcC
Confidence                 1125899999999999999998 8899999999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.98  E-value=1.5e-32  Score=335.77  Aligned_cols=234  Identities=21%  Similarity=0.280  Sum_probs=181.2

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ..|...+.||+|+||.||+|+++.++..||+|.++.....       ...|+++++.++|||||++++++.++...|+||
T Consensus       690 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-------~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~  762 (968)
T PLN00113        690 SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI-------PSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIH  762 (968)
T ss_pred             hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc-------cHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEE
Confidence            3466678899999999999999999999999998653211       134688899999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhH---hcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH---MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH---~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      ||+++|+|.++++.     +++..+..++.||+.||+|||   +.+|+||||||+|||++.++..++. ||......   
T Consensus       763 Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~---  833 (968)
T PLN00113        763 EYIEGKNLSEVLRN-----LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLC---  833 (968)
T ss_pred             eCCCCCcHHHHHhc-----CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccc---
Confidence            99999999998853     788889999999999999999   6799999999999999988887775 55431100   


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                   ...
T Consensus       834 -----------------------------------------------------------------------------~~~  836 (968)
T PLN00113        834 -----------------------------------------------------------------------------TDT  836 (968)
T ss_pred             -----------------------------------------------------------------------------cCC
Confidence                                                                                         001


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc-cceee-------------eeccccc--CCCC
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFN-------------VVGQQLR--FPDS  631 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~-------------i~~~~~~--~p~~  631 (730)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||...... ..+..             ++.....  .+..
T Consensus       837 ~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  916 (968)
T PLN00113        837 KCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVN  916 (968)
T ss_pred             CccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCcc
Confidence            126889999999999999999999999999999999999999543211 00000             0000000  0000


Q ss_pred             CCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          632 PATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       632 ~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      .....++.+++.+||..||++||+++
T Consensus       917 ~~~~~~~~~l~~~Cl~~~P~~RPt~~  942 (968)
T PLN00113        917 QNEIVEVMNLALHCTATDPTARPCAN  942 (968)
T ss_pred             HHHHHHHHHHHHhhCcCCchhCcCHH
Confidence            11123567899999999999999953

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.98  E-value=1e-33  Score=316.51  Aligned_cols=262  Identities=42%  Similarity=0.723  Sum_probs=223.6

Q ss_pred             EEccCCcEEEEEEEE---CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeEEeeec
Q 004790          338 RLGCGDIGSVYLSEL---SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCLVMEYC  413 (730)
Q Consensus       338 ~LG~G~fG~Vyla~~---~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~LVmEy~  413 (730)
                      .+|.|+||.|++++.   ...+..||||+.++......... +...|..++...+ ||++++++.+|+++..+|++++|.
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~-~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~   79 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRT-HTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFL   79 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhccccccccccccc-ccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhc
Confidence            379999999998754   44577899999998877665544 6778999999996 999999999999999999999999


Q ss_pred             CCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccC
Q 004790          414 PGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS  493 (730)
Q Consensus       414 ~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~  493 (730)
                      .||+|...+...  ..+.+...++|.++++.|++++|+.||+|||+|++||+++.+||+++.|||+++...         
T Consensus        80 rgg~lft~l~~~--~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v---------  148 (612)
T KOG0603|consen   80 RGGDLFTRLSKE--VMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAV---------  148 (612)
T ss_pred             ccchhhhccccC--CchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhH---------
Confidence            999998876655  578999999999999999999999999999999999999999999999999985321         


Q ss_pred             CCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCc
Q 004790          494 SLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTH  573 (730)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~  573 (730)
                                                                                       .+      ...|||.
T Consensus       149 -----------------------------------------------------------------~~------~~~cgt~  157 (612)
T KOG0603|consen  149 -----------------------------------------------------------------KE------KIACGTY  157 (612)
T ss_pred             -----------------------------------------------------------------hh------hhcccch
Confidence                                                                             00      0118999


Q ss_pred             ccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCc
Q 004790          574 EYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR  653 (730)
Q Consensus       574 ~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R  653 (730)
                      .|||||++.  +|..++||||||+++|||++|..||.+    ++..+|....+.+|  ...+..++++++.|+.++|..|
T Consensus       158 eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~----~~~~~Il~~~~~~p--~~l~~~a~~~~~~l~~r~p~nr  229 (612)
T KOG0603|consen  158 EYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG----DTMKRILKAELEMP--RELSAEARSLFRQLFKRNPENR  229 (612)
T ss_pred             hhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch----HHHHHHhhhccCCc--hhhhHHHHHHHHHHHhhCHHHH
Confidence            999999999  789999999999999999999999987    56666766666555  4678899999999999999999


Q ss_pred             CCch-hcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCC
Q 004790          654 LGVK-RGATEIKQHPFFEGVNWALI--RCSTPPEVPRPME  690 (730)
Q Consensus       654 ~t~~-~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~  690 (730)
                      +... +++.++++|+||..++|..+  +...+|+.|....
T Consensus       230 Lg~~~~~~~eik~h~f~~~i~~~~l~~r~~~~~fkp~~~~  269 (612)
T KOG0603|consen  230 LGAGPDGVDEIKQHEFFQSIDWNELEARSRPPPFKPGSIT  269 (612)
T ss_pred             hccCcchhHHHhccchheeeeHhhHhhcCCCCCCCCcccc
Confidence            9974 68999999999999999966  4445555555443

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-31  Score=264.35  Aligned_cols=217  Identities=26%  Similarity=0.378  Sum_probs=173.6

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      +.-++...+..||+|++|.|-+.++..+|...|+|.+.... . .+.+.++.+|+++..+. ++|++|.+|+.+..+...
T Consensus        43 V~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tv-n-~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdv  120 (282)
T KOG0984|consen   43 VPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATV-N-SQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDV  120 (282)
T ss_pred             cchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhc-C-hHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccE
Confidence            44456677889999999999999999999999999996543 3 34556788899887665 899999999999999999


Q ss_pred             eEEeeecCCCCccccccc--cCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccccccc
Q 004790          407 CLVMEYCPGGDLHTLRQR--QPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~--~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      |+.||.| ..+|..+...  ..++.++|...-.++..|+.||.|||+ ..|||||+||.||||+.+|++|+||||++-.+
T Consensus       121 wIcME~M-~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L  199 (282)
T KOG0984|consen  121 WICMELM-DTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYL  199 (282)
T ss_pred             EEeHHHh-hhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceee
Confidence            9999999 6777654332  245789999999999999999999996 58999999999999999999999999998432


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..+.                                                                       +    
T Consensus       200 ~dSi-----------------------------------------------------------------------A----  204 (282)
T KOG0984|consen  200 VDSI-----------------------------------------------------------------------A----  204 (282)
T ss_pred             hhhh-----------------------------------------------------------------------H----
Confidence            1100                                                                       0    


Q ss_pred             ccccccccCcccCChhhhcc----CCCCCcceeechhHHHHHHhhCCCCCCCCC-Cccceeeeecc
Q 004790          564 ARSMSFVGTHEYLAPEIIKG----EGHGSAVDWWTFGIFLHELLYGKTPFKGSG-NRATLFNVVGQ  624 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g----~~~~~~sDIWSLG~iLyELltG~~PF~g~~-~~~~l~~i~~~  624 (730)
                       . +--.|-..|||||.+..    .+|+-++||||||++++||.+++.||..-. +.+++.+++..
T Consensus       205 -k-t~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkqvVee  268 (282)
T KOG0984|consen  205 -K-TMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQVVEE  268 (282)
T ss_pred             -H-HHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccCCHHHHHHHHhcC
Confidence             0 00246778999999864    378999999999999999999999997543 33444444443

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.8e-30  Score=301.28  Aligned_cols=263  Identities=24%  Similarity=0.361  Sum_probs=210.2

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECC-------CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSS-------TRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYT  398 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~-------t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~  398 (730)
                      ++..++..+.+.||+|.||.||+|....       ....||||.++.....  .....+..|+++|+.+ .||||+.|.+
T Consensus       292 e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~--~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  292 EIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS--SEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             eechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCc--HHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            3445566777799999999999997531       1456999998655433  5567789999999988 6999999999


Q ss_pred             cccccceeeEEeeecCCCCccccccccC------C--------CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccE
Q 004790          399 HFETDRFSCLVMEYCPGGDLHTLRQRQP------G--------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENV  464 (730)
Q Consensus       399 ~f~~~~~l~LVmEy~~GGsL~~ll~~~~------~--------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNI  464 (730)
                      ++...+.+++|+|||..|+|..++...+      .        ..++......++.||+.|++||++..+|||||-..||
T Consensus       370 ~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNV  449 (609)
T KOG0200|consen  370 ACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNV  449 (609)
T ss_pred             eeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhE
Confidence            9999999999999999999999887653      0        1388889999999999999999999999999999999


Q ss_pred             EecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          465 LVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       465 Ll~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                      |+..+..+||+|||||+........                                                       
T Consensus       450 Li~~~~~~kIaDFGlar~~~~~~~y-------------------------------------------------------  474 (609)
T KOG0200|consen  450 LITKNKVIKIADFGLARDHYNKDYY-------------------------------------------------------  474 (609)
T ss_pred             EecCCCEEEEccccceeccCCCCce-------------------------------------------------------
Confidence            9999999999999999642110000                                                       


Q ss_pred             ccCCCCCCCCccccccccccccccccc--CcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeee
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVG--THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNV  621 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vG--T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i  621 (730)
                                          +...-.|  ...|||||.+....|+.++|+||+||+|||+++ |..||.+......+.+.
T Consensus       475 --------------------~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~~  534 (609)
T KOG0200|consen  475 --------------------RTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLEF  534 (609)
T ss_pred             --------------------EecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHHH
Confidence                                0000112  234999999999999999999999999999995 99999985533333445


Q ss_pred             ecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       622 ~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      +....+...+..++.++.+|++.||..+|++||++.+..+.+-.|
T Consensus       535 l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~  579 (609)
T KOG0200|consen  535 LKEGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKH  579 (609)
T ss_pred             HhcCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHH
Confidence            566666666677899999999999999999999986555555554

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.97  E-value=2e-29  Score=245.74  Aligned_cols=213  Identities=39%  Similarity=0.610  Sum_probs=183.3

Q ss_pred             EccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCc
Q 004790          339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL  418 (730)
Q Consensus       339 LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL  418 (730)
                      ||.|++|.||+++...+++.+++|++.......  ....+.+|+++++.+.|++|+++++++......+++|||+.|++|
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~--~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l   78 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS--LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSL   78 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh--HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcH
Confidence            689999999999999889999999997654322  345688999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-CCceEEecccccccccCCCcccccCCCCC
Q 004790          419 HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-DGHIMLSDFDLSLRCAVSPTLIKTSSLDS  497 (730)
Q Consensus       419 ~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-~g~vKL~DFGlA~~~~~~~~~~~~~~~~~  497 (730)
                      ..++.... ..++...++.++.+++.+|.|||+.|++|+||+|.||+++. +++++|+|||.+........         
T Consensus        79 ~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~---------  148 (215)
T cd00180          79 KDLLKENE-GKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS---------  148 (215)
T ss_pred             HHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc---------
Confidence            99877532 35889999999999999999999999999999999999999 89999999998843210000         


Q ss_pred             CCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCC
Q 004790          498 DPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLA  577 (730)
Q Consensus       498 ~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~A  577 (730)
                                                                                         ......+...|++
T Consensus       149 -------------------------------------------------------------------~~~~~~~~~~~~~  161 (215)
T cd00180         149 -------------------------------------------------------------------LLKTIVGTPAYMA  161 (215)
T ss_pred             -------------------------------------------------------------------hhhcccCCCCccC
Confidence                                                                               0112357888999


Q ss_pred             hhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          578 PEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       578 PEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      ||.+... .++.+.|+|+||+++|+|                                 ..+.++|.+||..||++|++ 
T Consensus       162 pe~~~~~~~~~~~~D~~~lg~~~~~l---------------------------------~~~~~~l~~~l~~~p~~R~~-  207 (215)
T cd00180         162 PEVLLGKGYYSEKSDIWSLGVILYEL---------------------------------PELKDLIRKMLQKDPEKRPS-  207 (215)
T ss_pred             hhHhcccCCCCchhhhHHHHHHHHHH---------------------------------HHHHHHHHHHhhCCcccCcC-
Confidence            9999887 788999999999999999                                 67889999999999999999 


Q ss_pred             hhcHHHHHcCC
Q 004790          657 KRGATEIKQHP  667 (730)
Q Consensus       657 ~~~a~elL~HP  667 (730)
                         +.++++|+
T Consensus       208 ---~~~l~~~~  215 (215)
T cd00180         208 ---AKEILEHL  215 (215)
T ss_pred             ---HHHHhhCC
Confidence               68888775

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=2.2e-30  Score=293.12  Aligned_cols=253  Identities=23%  Similarity=0.274  Sum_probs=207.4

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCe----EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRC----YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~----~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ..+..++||+|+||+||+|.+-..++    .||||++....  ..+....+.+|+-+|..|+|||+++|++++.... +.
T Consensus       697 elkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t--~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~q  773 (1177)
T KOG1025|consen  697 ELKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFT--SPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQ  773 (1177)
T ss_pred             hhhhhceeccccceeEEeeeEecCCceecceeEEEEeeccC--CchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HH
Confidence            45667899999999999998855444    58999886543  2344566889999999999999999999998776 88


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      ||++|+++|.|.++.+.++ ..+.......|..||++||.|||++++|||||-..|||+..-.++|++|||+|+......
T Consensus       774 lvtq~mP~G~LlDyvr~hr-~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~  852 (1177)
T KOG1025|consen  774 LVTQLMPLGCLLDYVREHR-DNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDE  852 (1177)
T ss_pred             HHHHhcccchHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCccc
Confidence            9999999999999887754 457777888999999999999999999999999999999999999999999996543211


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                      .-+.                                                                          ..
T Consensus       853 ~ey~--------------------------------------------------------------------------~~  858 (1177)
T KOG1025|consen  853 KEYS--------------------------------------------------------------------------AP  858 (1177)
T ss_pred             cccc--------------------------------------------------------------------------cc
Confidence            1000                                                                          00


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...-.+-|||-|.+....|+.++|||||||++|||+| |..|+.+... +.+-+.+...-+++.++.++.++.-++.+||
T Consensus       859 ~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~-~eI~dlle~geRLsqPpiCtiDVy~~mvkCw  937 (1177)
T KOG1025|consen  859 GGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPA-EEIPDLLEKGERLSQPPICTIDVYMVMVKCW  937 (1177)
T ss_pred             ccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCH-HHhhHHHhccccCCCCCCccHHHHHHHHHHh
Confidence            0122456999999999999999999999999999996 9999988643 3444555555667888899999999999999


Q ss_pred             cCCCCCcCCchhcHHHH
Q 004790          647 VKEPQHRLGVKRGATEI  663 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~el  663 (730)
                      ..|+..||+++..++++
T Consensus       938 mid~~~rp~fkel~~~f  954 (1177)
T KOG1025|consen  938 MIDADSRPTFKELAEEF  954 (1177)
T ss_pred             ccCcccCccHHHHHHHH
Confidence            99999999987665554

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=3.6e-30  Score=278.94  Aligned_cols=242  Identities=26%  Similarity=0.356  Sum_probs=185.6

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHh--cCCCCCccccccccccc---
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL--LDHPFLPTLYTHFETDR---  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~--L~HPnIV~L~~~f~~~~---  404 (730)
                      ....++++.||+|.||.||+|++..  +.||||++..      +..+.+++|.+|...  ++|+||+++++.-+...   
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL~~--~~VAVKifp~------~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~  280 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQLDN--RLVAVKIFPE------QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADR  280 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhccC--ceeEEEecCH------HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccc
Confidence            4567788999999999999999865  6899999864      334568899999886  58999999999876544   


Q ss_pred             -eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh---------cceeecccCCccEEecCCCceEE
Q 004790          405 -FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM---------LGVVYRDLKPENVLVRDDGHIML  474 (730)
Q Consensus       405 -~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~---------~gIVHRDLKPeNILl~~~g~vKL  474 (730)
                       .++||+||.+.|+|.++|..+   .+++.....++.-|+.||+|||+         ..|+|||||..||||..|++..|
T Consensus       281 ~eywLVt~fh~kGsL~dyL~~n---tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccI  357 (534)
T KOG3653|consen  281 MEYWLVTEFHPKGSLCDYLKAN---TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCI  357 (534)
T ss_pred             cceeEEeeeccCCcHHHHHHhc---cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEe
Confidence             899999999999999999876   79999999999999999999996         24999999999999999999999


Q ss_pred             ecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCC
Q 004790          475 SDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTL  554 (730)
Q Consensus       475 ~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (730)
                      +|||||.++.+....                                                                 
T Consensus       358 aDFGLAl~~~p~~~~-----------------------------------------------------------------  372 (534)
T KOG3653|consen  358 ADFGLALRLEPGKPQ-----------------------------------------------------------------  372 (534)
T ss_pred             eccceeEEecCCCCC-----------------------------------------------------------------
Confidence            999999775311000                                                                 


Q ss_pred             cccccccccccccccccCcccCChhhhccCCC------CCcceeechhHHHHHHhhCCCCCC-CCCCc------------
Q 004790          555 PELVAEPTAARSMSFVGTHEYLAPEIIKGEGH------GSAVDWWTFGIFLHELLYGKTPFK-GSGNR------------  615 (730)
Q Consensus       555 ~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~------~~~sDIWSLG~iLyELltG~~PF~-g~~~~------------  615 (730)
                               .....-|||..|||||+|.|.--      -.+.||||+|.+||||++...-+. +.-..            
T Consensus       373 ---------~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~h  443 (534)
T KOG3653|consen  373 ---------GDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNH  443 (534)
T ss_pred             ---------cchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCC
Confidence                     00112489999999999987532      136899999999999998655443 21111            


Q ss_pred             ---cceee-eec--ccccCCCC---CCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          616 ---ATLFN-VVG--QQLRFPDS---PATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       616 ---~~l~~-i~~--~~~~~p~~---~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                         +.+.+ ++.  +...+|+.   ..--..+++.|..||..|++.|+|.
T Consensus       444 Pt~e~mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA  493 (534)
T KOG3653|consen  444 PTLEEMQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTA  493 (534)
T ss_pred             CCHHHHHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhh
Confidence               11111 121  22223321   1123456899999999999999995

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.96  E-value=2.4e-29  Score=251.29  Aligned_cols=205  Identities=44%  Similarity=0.688  Sum_probs=174.3

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeee
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEY  412 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy  412 (730)
                      |.+.+.||.|++|.||++.+..+++.+|+|.+......  .....+.+|++.++.++|+|++++++++......|+++||
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~   78 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE--KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEY   78 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch--HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEec
Confidence            67889999999999999999998899999999865433  2456788999999999999999999999999999999999


Q ss_pred             cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccccc
Q 004790          413 CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT  492 (730)
Q Consensus       413 ~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~  492 (730)
                      +++++|..++..... .+++..+..++.+++.+|.|||++|++|+||+|.||+++.++.++|+|||++.......     
T Consensus        79 ~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~-----  152 (225)
T smart00221       79 CEGGDLFDYLRKKGG-KLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDL-----  152 (225)
T ss_pred             cCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcc-----
Confidence            999999998876522 18899999999999999999999999999999999999999999999999885421000     


Q ss_pred             CCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccC
Q 004790          493 SSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT  572 (730)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT  572 (730)
                                                                                            ........++
T Consensus       153 ----------------------------------------------------------------------~~~~~~~~~~  162 (225)
T smart00221      153 ----------------------------------------------------------------------AALLKTVKGT  162 (225)
T ss_pred             ----------------------------------------------------------------------cccccceecc
Confidence                                                                                  0001124678


Q ss_pred             cccCChhhh-ccCCCCCcceeechhHHHHHHhhCCCCCCC-CCCc
Q 004790          573 HEYLAPEII-KGEGHGSAVDWWTFGIFLHELLYGKTPFKG-SGNR  615 (730)
Q Consensus       573 ~~Y~APEvl-~g~~~~~~sDIWSLG~iLyELltG~~PF~g-~~~~  615 (730)
                      ..|++||.+ ....++.++|+|+||+++|+|++|+.||.+ ..+.
T Consensus       163 ~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~~~~~~  207 (225)
T smart00221      163 PFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSGEGEFT  207 (225)
T ss_pred             CCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccccchhH
Confidence            899999999 666788899999999999999999999977 4444

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.8e-29  Score=271.83  Aligned_cols=243  Identities=26%  Similarity=0.351  Sum_probs=185.8

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHh--cCCCCCcccccccccc----c
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL--LDHPFLPTLYTHFETD----R  404 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~--L~HPnIV~L~~~f~~~----~  404 (730)
                      .+.++++.||+|.||.||+|.+++.  .||||++.....      ....+|.+|.+.  |+|+||+.+++.=..+    .
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~wrGe--~VAVKiF~srdE------~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~T  282 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRWRGE--DVAVKIFSSRDE------RSWFRETEIYQTVMLRHENILGFIAADNKDNGSWT  282 (513)
T ss_pred             heeEEEEEecCccccceeeccccCC--ceEEEEecccch------hhhhhHHHHHHHHHhccchhhhhhhccccCCCceE
Confidence            5689999999999999999999865  599999965432      235678888774  6999999999876543    4


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhc--------ceeecccCCccEEecCCCceEEec
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML--------GVVYRDLKPENVLVRDDGHIMLSD  476 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~--------gIVHRDLKPeNILl~~~g~vKL~D  476 (730)
                      ++|||++|-+.|+|+++|.++   .++......++.-++.||+|||..        .|.|||||..|||+..+|.+.|+|
T Consensus       283 QLwLvTdYHe~GSL~DyL~r~---tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IAD  359 (513)
T KOG2052|consen  283 QLWLVTDYHEHGSLYDYLNRN---TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD  359 (513)
T ss_pred             EEEEeeecccCCcHHHHHhhc---cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEee
Confidence            689999999999999999985   789999999999999999999952        399999999999999999999999


Q ss_pred             ccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcc
Q 004790          477 FDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPE  556 (730)
Q Consensus       477 FGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (730)
                      +|||.+.....+.+                                                         +        
T Consensus       360 LGLAv~h~~~t~~i---------------------------------------------------------d--------  374 (513)
T KOG2052|consen  360 LGLAVRHDSDTDTI---------------------------------------------------------D--------  374 (513)
T ss_pred             ceeeEEecccCCcc---------------------------------------------------------c--------
Confidence            99997643221110                                                         0        


Q ss_pred             cccccccccccccccCcccCChhhhccCC---C---CCcceeechhHHHHHHhhC----------CCCCCCC----CCcc
Q 004790          557 LVAEPTAARSMSFVGTHEYLAPEIIKGEG---H---GSAVDWWTFGIFLHELLYG----------KTPFKGS----GNRA  616 (730)
Q Consensus       557 ~~~e~~~~~~~s~vGT~~Y~APEvl~g~~---~---~~~sDIWSLG~iLyELltG----------~~PF~g~----~~~~  616 (730)
                             ...+.-|||-.|||||+|...-   +   -..+||||||.++||++..          ++||.+.    ...+
T Consensus       375 -------i~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~e  447 (513)
T KOG2052|consen  375 -------IPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFE  447 (513)
T ss_pred             -------CCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHH
Confidence                   0112349999999999997542   1   2469999999999999852          6788753    2334


Q ss_pred             ceeeeec-cccc--CCCCCCCChhH---HHHHHhhhcCCCCCcCCc
Q 004790          617 TLFNVVG-QQLR--FPDSPATSYAS---RDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       617 ~l~~i~~-~~~~--~p~~~~~s~~~---~dLI~~lL~~DP~~R~t~  656 (730)
                      .+.+++. ++++  +|..-.-.+.+   -.|++.||..||.-|+|.
T Consensus       448 eMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltA  493 (513)
T KOG2052|consen  448 EMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTA  493 (513)
T ss_pred             HHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHH
Confidence            4555543 2333  22222222333   478999999999999994

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.96  E-value=2.6e-30  Score=300.50  Aligned_cols=263  Identities=38%  Similarity=0.623  Sum_probs=201.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|..++.|-.|+||.||+++|+.+.+.+||| |+|..+..+          .||...+.|++|                
T Consensus        83 ~df~~IklisngAygavylvrh~~trqrfa~k-iNkq~lilR----------nilt~a~npfvv----------------  135 (1205)
T KOG0606|consen   83 SDFNTIKLISNGAYGAVYLVRHKETRQRFAMK-INKQNLILR----------NILTFAGNPFVV----------------  135 (1205)
T ss_pred             cccceeEeeccCCCCceeeeeccccccchhhc-ccccchhhh----------ccccccCCccee----------------
Confidence            57999999999999999999999999999995 444332111          155566677766                


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                           ||=..+++..  +.++.        +++.+++|||..||+|||+||+|+||..-||+||+||||++......+..
T Consensus       136 -----gDc~tllk~~--g~lPv--------dmvla~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atn  200 (1205)
T KOG0606|consen  136 -----GDCATLLKNI--GPLPV--------DMVLAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATN  200 (1205)
T ss_pred             -----chhhhhcccC--CCCcc--------hhhHHhHhhccCCeecCCCCCCcceeeecccccccchhhhhhhhhhccch
Confidence                 5555555543  33443        23789999999999999999999999999999999999986432111100


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                      ...            |                            --++.+                     ........|
T Consensus       201 l~e------------g----------------------------~I~k~t---------------------~Ef~dKqvc  219 (1205)
T KOG0606|consen  201 LKE------------G----------------------------HIEKDT---------------------HEFQDKQVC  219 (1205)
T ss_pred             hhh------------c----------------------------chHHHH---------------------HHhhhcccc
Confidence            000            0                            000000                     111223569


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCC-CCCChhHHHHHHhhhcCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS-PATSYASRDLIRGLLVKE  649 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~-~~~s~~~~dLI~~lL~~D  649 (730)
                      |||.|+||||+...+|+..+|||++|+|+||.+.|..||.|...++.+-.++...+.+|+. .....+++++|.+||+.+
T Consensus       220 gTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~visd~i~wpE~dea~p~Ea~dli~~LL~qn  299 (1205)
T KOG0606|consen  220 GTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEEDEALPPEAQDLIEQLLRQN  299 (1205)
T ss_pred             CCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhhhhhccccccCcCCCHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999998888887888877777764 456889999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCCcCCCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKF  697 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~~~~p~~~  697 (730)
                      |..|+.- .++-++++|+||+.+||..+-++..+++|.-...+...+|
T Consensus       300 p~~Rlgt-~ga~evk~h~ff~~LDw~~llRqkaefvpql~~eddtsyf  346 (1205)
T KOG0606|consen  300 PLCRLGT-GGALEVKQHGFFQLLDWKSLLRQKAEFVPQLESEDDTSYF  346 (1205)
T ss_pred             hHhhccc-chhhhhhhccceeecccchhhhhhccccccccccccchhh
Confidence            9999985 4889999999999999997766777888876555444333

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.4e-29  Score=258.42  Aligned_cols=254  Identities=24%  Similarity=0.349  Sum_probs=190.4

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccc-cccccceee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYT-HFETDRFSC  407 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~-~f~~~~~l~  407 (730)
                      -+.|.+.+.||+|-||.+.++++++++..+++|.+.+..    ..+..+++|...--.| .|.||+.-|+ .|++.+.++
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~----tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~Yv   98 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ----TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYV   98 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcch----hhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEE
Confidence            367999999999999999999999999999999998764    3455677887764444 7999999887 789999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC--CCceEEecccccccccC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD--DGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~--~g~vKL~DFGlA~~~~~  485 (730)
                      ++|||++.|||..-+..   ..+-|...+.+++|++.||+|||++++||||||.+||||-.  ...|||||||+.+..+.
T Consensus        99 F~qE~aP~gdL~snv~~---~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~  175 (378)
T KOG1345|consen   99 FVQEFAPRGDLRSNVEA---AGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGT  175 (378)
T ss_pred             EeeccCccchhhhhcCc---ccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeecccccccCc
Confidence            99999999999876554   36889999999999999999999999999999999999943  35899999999743110


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                                                                            +              .+         
T Consensus       176 ------------------------------------------------------t--------------V~---------  178 (378)
T KOG1345|consen  176 ------------------------------------------------------T--------------VK---------  178 (378)
T ss_pred             ------------------------------------------------------e--------------eh---------
Confidence                                                                  0              00         


Q ss_pred             ccccccCcccCChhhhccC---C--CCCcceeechhHHHHHHhhCCCCCCCCCCccce-ee---ee-cccccCCC-CCCC
Q 004790          566 SMSFVGTHEYLAPEIIKGE---G--HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL-FN---VV-GQQLRFPD-SPAT  634 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~---~--~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l-~~---i~-~~~~~~p~-~~~~  634 (730)
                        ..--+..|.+||++...   .  ..+.+|+|.||+++|.+|+|++||......+.- .+   .. ......|. ....
T Consensus       179 --~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~~F~~f  256 (378)
T KOG1345|consen  179 --YLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPALPKKFNPF  256 (378)
T ss_pred             --hhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCccCchhhccc
Confidence              00124568999987533   2  367899999999999999999999854322111 11   11 11122232 1346


Q ss_pred             ChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          635 SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       635 s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      ++.+..+.++-|..++++|--+. .+.......|.+
T Consensus       257 s~~a~r~Fkk~lt~~~~drcki~-~~kk~rk~~w~E  291 (378)
T KOG1345|consen  257 SEKALRLFKKSLTPRFKDRCKIW-TAKKMRKCLWKE  291 (378)
T ss_pred             CHHHHHHHHHhcCCcccccchhH-HHHHHHHHHHHH
Confidence            78889999999999999993321 134444444443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.5e-29  Score=303.90  Aligned_cols=234  Identities=16%  Similarity=0.215  Sum_probs=155.4

Q ss_pred             cCC-CCCccccccc-------cccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeeccc
Q 004790          388 LDH-PFLPTLYTHF-------ETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDL  459 (730)
Q Consensus       388 L~H-PnIV~L~~~f-------~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDL  459 (730)
                      +.| +||.+++++|       .....++++|||+ +++|+.++... ...+++.+++.|++||+.||.|||++|||||||
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDl  106 (793)
T PLN00181         29 LSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNP-DRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNV  106 (793)
T ss_pred             hhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcc-cccccHHHHHHHHHHHHHHHHHHHhCCeeeccC
Confidence            445 5778888877       2335678899988 77999988653 356999999999999999999999999999999


Q ss_pred             CCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccc
Q 004790          460 KPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKK  539 (730)
Q Consensus       460 KPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~  539 (730)
                      ||+||||+..|.+||+|||++.........        .......|.......                   ....  ..
T Consensus       107 KP~NiLl~~~~~~k~~d~~~~~~~~~~~~~--------~~ki~DfG~a~~~~~-------------------~~~~--~~  157 (793)
T PLN00181        107 RPSCFVMSSFNHVSFIESASCSDSGSDEDA--------TTKSREIGSSRREEI-------------------LSER--RI  157 (793)
T ss_pred             CchhEEEcccCcEEEeeccccCcccccccC--------ccccccccccccccc-------------------cccc--ch
Confidence            999999999999999999987432110000        000000000000000                   0000  00


Q ss_pred             cCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcccee
Q 004790          540 TRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF  619 (730)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~  619 (730)
                      . +           .......+........+||++|||||++.+..|+.++|||||||+||||++|.+||.....  .+.
T Consensus       158 ~-~-----------~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~--~~~  223 (793)
T PLN00181        158 E-K-----------LEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSR--TMS  223 (793)
T ss_pred             h-h-----------hhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHH--HHH
Confidence            0 0           0000000001112235899999999999999999999999999999999999998764321  111


Q ss_pred             eeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          620 NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       620 ~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      .+... ...+..........+++.+||.+||.+||+    +.|+++||||..
T Consensus       224 ~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~P~~Rps----~~eil~h~~~~~  270 (793)
T PLN00181        224 SLRHR-VLPPQILLNWPKEASFCLWLLHPEPSCRPS----MSELLQSEFINE  270 (793)
T ss_pred             HHHHh-hcChhhhhcCHHHHHHHHHhCCCChhhCcC----hHHHhhchhhhh
Confidence            11111 111111122456679999999999999999    699999999975

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.94  E-value=2.8e-26  Score=234.14  Aligned_cols=262  Identities=36%  Similarity=0.573  Sum_probs=201.9

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCC-CCccccccccccceeeEEee
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP-FLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HP-nIV~L~~~f~~~~~l~LVmE  411 (730)
                      |.+.+.||.|+||.||++.+.   ..+|+|.+.+...........+.+|..+++.+.|+ +|+++++++......+++++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   78 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVME   78 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec---cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEe
Confidence            788999999999999999998   67999999877655444567789999999999988 79999999988888899999


Q ss_pred             ecCCCCccccccccCC-CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC-ceEEecccccccccCCCcc
Q 004790          412 YCPGGDLHTLRQRQPG-KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG-HIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~-~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g-~vKL~DFGlA~~~~~~~~~  489 (730)
                      |+.+++|..++..... ..+.+..+..++.|++.++.|+|..|++||||||+|||++..+ .++++|||++.........
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~  158 (384)
T COG0515          79 YVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGST  158 (384)
T ss_pred             cCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCcc
Confidence            9999999966554321 2688999999999999999999999999999999999999988 7999999998421100000


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                      .                     .                                                 ........
T Consensus       159 ~---------------------~-------------------------------------------------~~~~~~~~  168 (384)
T COG0515         159 S---------------------S-------------------------------------------------IPALPSTS  168 (384)
T ss_pred             c---------------------c-------------------------------------------------cccccccc
Confidence            0                     0                                                 00112356


Q ss_pred             ccCcccCChhhhcc---CCCCCcceeechhHHHHHHhhCCCCCCCCCC---ccceeeee-ccccc-CC--CCCCC----C
Q 004790          570 VGTHEYLAPEIIKG---EGHGSAVDWWTFGIFLHELLYGKTPFKGSGN---RATLFNVV-GQQLR-FP--DSPAT----S  635 (730)
Q Consensus       570 vGT~~Y~APEvl~g---~~~~~~sDIWSLG~iLyELltG~~PF~g~~~---~~~l~~i~-~~~~~-~p--~~~~~----s  635 (730)
                      +||..|+|||++.+   ..+....|+|++|++++++++|..||.....   .......+ ..... ..  .....    .
T Consensus       169 ~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (384)
T COG0515         169 VGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELIS  248 (384)
T ss_pred             ccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCcccccccCccccchhh
Confidence            89999999999998   5788999999999999999999999887653   12222222 11111 11  11111    2


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ..+.+++.+++..+|..|.+    ..+...++|...
T Consensus       249 ~~~~~~~~~~~~~~~~~r~~----~~~~~~~~~~~~  280 (384)
T COG0515         249 KAASDLLKKLLAKDPKNRLS----SSSDLSHDLLAH  280 (384)
T ss_pred             HHHHHHHHHHHhcCchhcCC----HHHHhhchHhhC
Confidence            57889999999999999999    455555555443

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.1e-27  Score=277.76  Aligned_cols=262  Identities=26%  Similarity=0.366  Sum_probs=203.4

Q ss_pred             EEEeEEccCCcEEEEEEEECCCCeEEEEEEeeh---hhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          334 RLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDK---ASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       334 ~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k---~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      .....+|.|++|.|+.+......+.++.|....   ......+....+..|..|-..|.|||++.....+++....+-+|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            456789999999999988877776677765542   22223333334777888888899999998888777766666669


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |||++ ||+.++.+.  +.+....+..++.|++.||.|||..||.|||||++|+|+..+|.+||+|||.+..+..     
T Consensus       401 E~~~~-Dlf~~~~~~--~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~-----  472 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSN--GKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRY-----  472 (601)
T ss_pred             hcccH-HHHHHHhcc--cccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeecc-----
Confidence            99999 999988764  5788899999999999999999999999999999999999999999999998732210     


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                         ..|.+......++
T Consensus       473 -------------------------------------------------------------------~~e~~~~~~~g~~  485 (601)
T KOG0590|consen  473 -------------------------------------------------------------------PWEKNIHESSGIV  485 (601)
T ss_pred             -------------------------------------------------------------------CcchhhhhhcCcc
Confidence                                                                               0011112234579


Q ss_pred             cCcccCChhhhccCCCCC-cceeechhHHHHHHhhCCCCCCCCCCcccee--eeeccccc-----CCCCCCCChhHHHHH
Q 004790          571 GTHEYLAPEIIKGEGHGS-AVDWWTFGIFLHELLYGKTPFKGSGNRATLF--NVVGQQLR-----FPDSPATSYASRDLI  642 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~-~sDIWSLG~iLyELltG~~PF~g~~~~~~l~--~i~~~~~~-----~p~~~~~s~~~~dLI  642 (730)
                      |+-.|+|||++.+..|.+ .+||||.|++++.|++|+.||+-....+..+  .....+..     .+....++...+.+|
T Consensus       486 gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~  565 (601)
T KOG0590|consen  486 GSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIII  565 (601)
T ss_pred             cCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHH
Confidence            999999999999999965 6899999999999999999998765554431  11111111     112245677889999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      .+||+.||.+|++    +++|++.+||+.++-
T Consensus       566 ~~~l~~~P~~R~t----i~~i~~d~W~~~i~~  593 (601)
T KOG0590|consen  566 YRMLQLDPTKRIT----IEQILNDEWIRSIEC  593 (601)
T ss_pred             HHHccCChhheec----HHHHhhChHhhhcce
Confidence            9999999999999    699999999998763

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.93  E-value=1.5e-26  Score=225.68  Aligned_cols=161  Identities=21%  Similarity=0.201  Sum_probs=125.8

Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCC
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL  495 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~  495 (730)
                      |+|.+++... +..+++.+++.|+.||+.||.|||+++      ||+|||++.++.+|+  ||++.....          
T Consensus         1 GsL~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~~~~~~~--fG~~~~~~~----------   61 (176)
T smart00750        1 VSLADILEVR-GRPLNEEEIWAVCLQCLRALRELHRQA------KSGNILLTWDGLLKL--DGSVAFKTP----------   61 (176)
T ss_pred             CcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhcC------CcccEeEcCccceee--ccceEeecc----------
Confidence            6788887653 356999999999999999999999998      999999999999999  998742100          


Q ss_pred             CCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCccc
Q 004790          496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEY  575 (730)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y  575 (730)
                                                                                             ....||+.|
T Consensus        62 -----------------------------------------------------------------------~~~~g~~~y   70 (176)
T smart00750       62 -----------------------------------------------------------------------EQSRVDPYF   70 (176)
T ss_pred             -----------------------------------------------------------------------ccCCCcccc
Confidence                                                                                   011589999


Q ss_pred             CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcccee-eeecccccC-----CCCCCCCh--hHHHHHHhhhc
Q 004790          576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVGQQLRF-----PDSPATSY--ASRDLIRGLLV  647 (730)
Q Consensus       576 ~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~-~i~~~~~~~-----p~~~~~s~--~~~dLI~~lL~  647 (730)
                      ||||++.+..++.++|||||||++|||++|+.||.......... .+.......     +.....+.  ++++||.+||.
T Consensus        71 ~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~  150 (176)
T smart00750       71 MAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCAS  150 (176)
T ss_pred             cChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHh
Confidence            99999999999999999999999999999999997654322221 222111111     11112233  68999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      .||.+||+    +.++++|+|+.
T Consensus       151 ~~p~~Rp~----~~~ll~~~~~~  169 (176)
T smart00750      151 RLPQRREA----ANHYLAHCRAL  169 (176)
T ss_pred             cccccccC----HHHHHHHHHHH
Confidence            99999999    68999999875

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.93  E-value=1.1e-25  Score=246.59  Aligned_cols=143  Identities=20%  Similarity=0.132  Sum_probs=115.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECC-CCeEEEEEEeehhhh--hhHHHHHHHHHHHHHHHhcCCCCCcc-cccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSS-TRCYFAMKVMDKASL--ASRKKLTRAQTEREILQLLDHPFLPT-LYTHFETD  403 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~-t~~~vAvKvi~k~~~--~~~~~~~~~~~E~~IL~~L~HPnIV~-L~~~f~~~  403 (730)
                      ...++|.+.+.||+|+||+||+|+++. ++..||||++.....  ........+.+|+++|+.++|+||+. ++++    
T Consensus        15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~----   90 (365)
T PRK09188         15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT----   90 (365)
T ss_pred             cccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc----
Confidence            346789999999999999999999876 677889998753311  12234556899999999999999985 5543    


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeeccc-CCccEEecCCCceEEeccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDL-KPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDL-KPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      ...|||||||+|++|... ...  .      ...++.|++.||.|||++||+|||| ||+|||++.++.+||+|||+|+.
T Consensus        91 ~~~~LVmE~~~G~~L~~~-~~~--~------~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~  161 (365)
T PRK09188         91 GKDGLVRGWTEGVPLHLA-RPH--G------DPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASV  161 (365)
T ss_pred             CCcEEEEEccCCCCHHHh-Ccc--c------hHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECcccee
Confidence            357999999999999632 111  1      1457899999999999999999999 99999999999999999999965


Q ss_pred             c
Q 004790          483 C  483 (730)
Q Consensus       483 ~  483 (730)
                      +
T Consensus       162 ~  162 (365)
T PRK09188        162 F  162 (365)
T ss_pred             c
Confidence            4

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.93  E-value=9.8e-26  Score=239.34  Aligned_cols=258  Identities=20%  Similarity=0.252  Sum_probs=204.5

Q ss_pred             hhcCCccccCCeEEEeEEccCCcEEEEEEEECCCCe-----EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccc
Q 004790          322 RARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRC-----YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTL  396 (730)
Q Consensus       322 ~~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~-----~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L  396 (730)
                      +..+..+.-.++++...+-+|.||.||.|.++..+.     .|-+|.++..  .++-++..+..|..+|..+.|||+..+
T Consensus       275 r~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~--AS~iQv~~~L~es~lly~~sH~nll~V  352 (563)
T KOG1024|consen  275 RLQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQH--ASQIQVNLLLQESMLLYGASHPNLLSV  352 (563)
T ss_pred             hHHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhc--ccHHHHHHHHHHHHHHhcCcCCCccce
Confidence            334445566789999999999999999997765432     3455655332  355677888999999999999999999


Q ss_pred             cccc-cccceeeEEeeecCCCCccccccccC------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC
Q 004790          397 YTHF-ETDRFSCLVMEYCPGGDLHTLRQRQP------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD  469 (730)
Q Consensus       397 ~~~f-~~~~~l~LVmEy~~GGsL~~ll~~~~------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~  469 (730)
                      .+.. ++....+.++.++.-|+|..+++..+      ...++..+...++.|++.|++|||.+||||.||-..|.+|++.
T Consensus       353 ~~V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~  432 (563)
T KOG1024|consen  353 LGVSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQ  432 (563)
T ss_pred             eEEEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhh
Confidence            8865 45667888899998899988877221      2457778888899999999999999999999999999999999


Q ss_pred             CceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCC
Q 004790          470 GHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGL  549 (730)
Q Consensus       470 g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (730)
                      -++||+|=.|++.+.           ..|+.                    |++.                         
T Consensus       433 LqVkltDsaLSRDLF-----------P~DYh--------------------cLGD-------------------------  456 (563)
T KOG1024|consen  433 LQVKLTDSALSRDLF-----------PGDYH--------------------CLGD-------------------------  456 (563)
T ss_pred             eeEEeccchhccccC-----------ccccc--------------------ccCC-------------------------
Confidence            999999999986542           11211                    1110                         


Q ss_pred             CCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccC
Q 004790          550 PSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRF  628 (730)
Q Consensus       550 ~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~  628 (730)
                                  ..      -....||+||.|....|+.++|+|||||+||||++ |+.|+...++.++.. .+...+++
T Consensus       457 ------------nE------nRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~-ylkdGyRl  517 (563)
T KOG1024|consen  457 ------------NE------NRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEH-YLKDGYRL  517 (563)
T ss_pred             ------------CC------CCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHH-HHhcccee
Confidence                        00      12456999999999999999999999999999996 999998776655543 44556677


Q ss_pred             CCCCCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          629 PDSPATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       629 p~~~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      ..+..+++++-.++..||..+|++||++
T Consensus       518 aQP~NCPDeLf~vMacCWallpeeRPsf  545 (563)
T KOG1024|consen  518 AQPFNCPDELFTVMACCWALLPEERPSF  545 (563)
T ss_pred             cCCCCCcHHHHHHHHHHHhcCcccCCCH
Confidence            7777899999999999999999999996

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.92  E-value=9.2e-25  Score=236.11  Aligned_cols=256  Identities=26%  Similarity=0.333  Sum_probs=195.1

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCC-eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC----CCCccccccc-cccce
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTR-CYFAMKVMDKASLASRKKLTRAQTEREILQLLDH----PFLPTLYTHF-ETDRF  405 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~-~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H----PnIV~L~~~f-~~~~~  405 (730)
                      +|.+.++||+|+||.||++.+..++ ..+|+|+.........   ..+..|+.+|..+..    .+++.+++.+ ..+.+
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~---~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~   95 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKP---SVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDF   95 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCC---ccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCce
Confidence            8999999999999999999988774 6799998866422111   146678888888863    6999999999 58889


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC-----CceEEeccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD-----GHIMLSDFDLS  480 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~-----g~vKL~DFGlA  480 (730)
                      -|+||+.+ |.+|.+++...+.+.|+...+..++.|++.+|++||+.|+|||||||+|+++...     -.+.|.|||++
T Consensus        96 ~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGla  174 (322)
T KOG1164|consen   96 NFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLA  174 (322)
T ss_pred             eEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCC
Confidence            99999999 9999998877766889999999999999999999999999999999999999765     36999999999


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ++......                .+..                               .+.+                 
T Consensus       175 r~~~~~~~----------------~~~~-------------------------------~~~~-----------------  190 (322)
T KOG1164|consen  175 RRFKYVGD----------------SGGN-------------------------------LRPP-----------------  190 (322)
T ss_pred             ccccccCC----------------CCcc-------------------------------cccC-----------------
Confidence            73211000                0000                               0000                 


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc--cccCC-CCCCCChh
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--QLRFP-DSPATSYA  637 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~--~~~~p-~~~~~s~~  637 (730)
                        ......+.||..|+++.+..+...+.+.|+||++.++.||+.|..||.+.........+...  ..... .....+.+
T Consensus       191 --r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (322)
T KOG1164|consen  191 --RPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKDPRKLLTDRFGDLKPEE  268 (322)
T ss_pred             --CCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHHhhhhccccccCCChHH
Confidence              00012357999999999999999999999999999999999999999876543332222111  11111 12334567


Q ss_pred             HHHHHHhhhcCCCCCcCCch
Q 004790          638 SRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~  657 (730)
                      +..+...+-..+...+|...
T Consensus       269 ~~~~~~~~~~~~~~~~Pdy~  288 (322)
T KOG1164|consen  269 FAKILEYIDSLDYEDKPDYE  288 (322)
T ss_pred             HHHHHHHhhccCCcCCCCHH
Confidence            77787777778899999853

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.90  E-value=6.6e-24  Score=214.04  Aligned_cols=277  Identities=17%  Similarity=0.240  Sum_probs=203.2

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC-CCCccccccccccce
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH-PFLPTLYTHFETDRF  405 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H-PnIV~L~~~f~~~~~  405 (730)
                      .+....|+++++||+|+||.+|+|....+|..||||+-....-     ...+..|..+.+.|+| ..|+.+..++.+..+
T Consensus        11 ~iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~-----hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~y   85 (341)
T KOG1163|consen   11 LIVGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK-----HPQLLYESKVYRILQGGVGIPHIRHYGTEKDY   85 (341)
T ss_pred             heeccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC-----CcchhHHHHHHHHhccCCCCchhhhhcccccc
Confidence            3556899999999999999999999999999999998755422     2346779999999854 688899999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---CCceEEeccccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---DGHIMLSDFDLSLR  482 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~g~vKL~DFGlA~~  482 (730)
                      -.|||+++ |.+|.++.+-. .+.|+...+..++-||+.-|+|+|.+++|||||||+|+|..-   -..+.|+|||||++
T Consensus        86 nvlVMdLL-GPsLEdLfnfC-~R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKk  163 (341)
T KOG1163|consen   86 NVLVMDLL-GPSLEDLFNFC-SRRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKK  163 (341)
T ss_pred             ceeeeecc-CccHHHHHHHH-hhhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchhh
Confidence            99999999 99999887643 357999999999999999999999999999999999999954   35699999999976


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      +-...+-..                                        +                             .
T Consensus       164 y~d~~t~~H----------------------------------------I-----------------------------p  174 (341)
T KOG1163|consen  164 YRDIRTRQH----------------------------------------I-----------------------------P  174 (341)
T ss_pred             hcccccccc----------------------------------------C-----------------------------c
Confidence            532111000                                        0                             0


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc---cceeeeecccccCCC---CCCCCh
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR---ATLFNVVGQQLRFPD---SPATSY  636 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~---~~l~~i~~~~~~~p~---~~~~s~  636 (730)
                      ........||..|.+--...+...+..-|+=|+|.+|.++.-|..||.|....   ..+.+|.......|.   ....+.
T Consensus       175 yre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~QKyEkI~EkK~s~~ie~LC~G~P~  254 (341)
T KOG1163|consen  175 YREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQKYEKISEKKMSTPIEVLCKGFPA  254 (341)
T ss_pred             cccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhhHHHHHHHHHHhhcCCCHHHHhCCCcH
Confidence            11223568999999988888888889999999999999999999999986432   333344443333332   234566


Q ss_pred             hHHHHHHhhhcCCCCCcCCch---h---cHHHHHcCCCCCCCCcchhcc
Q 004790          637 ASRDLIRGLLVKEPQHRLGVK---R---GATEIKQHPFFEGVNWALIRC  679 (730)
Q Consensus       637 ~~~dLI~~lL~~DP~~R~t~~---~---~a~elL~HPfF~~v~w~~~r~  679 (730)
                      ++.-.|.-|-..--++-|...   .   .+-.-|+|-+=--.||..+..
T Consensus       255 EF~myl~Y~R~L~F~E~Pdy~ylrqlFriLfr~ln~~~d~iyDW~~lkq  303 (341)
T KOG1163|consen  255 EFAMYLNYCRGLGFEEKPDYMYLRQLFRILFRTLNHQYDYIYDWTMLKQ  303 (341)
T ss_pred             HHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHhhccccCCeEeeHHHHHH
Confidence            666666655544444444421   0   111123444433468987753

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.89  E-value=3.4e-24  Score=249.88  Aligned_cols=317  Identities=31%  Similarity=0.484  Sum_probs=252.5

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ..+.|.+++-+-+|.++.++.+.-..++...++|+..+.........+.+..+..++-...||.+++....|.....++|
T Consensus       802 S~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~L  881 (1205)
T KOG0606|consen  802 SPDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLPL  881 (1205)
T ss_pred             CCccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcch
Confidence            45778899999999999999999999998899998877665555556666777777777788999988888888889999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||+|+.|++|...++..  +..++..++.++..+..+++|||...++|||++|.|+|+..+|+.+++|||+......-+.
T Consensus       882 ~~~~~~~~~~~Skl~~~--~~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p  959 (1205)
T KOG0606|consen  882 VGHYLNGGDLPSKLHNS--GCLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPP  959 (1205)
T ss_pred             hhHHhccCCchhhhhcC--CCcccccccchhHHHHhhhhccccchhhcccccccchhhcccCCcccCccccccccccccC
Confidence            99999999999988876  4788899999999999999999999999999999999999999999999996533211111


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                      ....+.                            +.....++.+...    .++  .+          +-. ....+...
T Consensus       960 ~~~~sg----------------------------~~~~~~~~~~~~~----~~~--~~----------l~~-~~~~~~~~  994 (1205)
T KOG0606|consen  960 TTDLSG----------------------------PSSSGTPRRLSRS----ERR--PQ----------LSA-DEARRKHA  994 (1205)
T ss_pred             cCCccc----------------------------ccccCcccccccc----ccc--cc----------ccc-chhhcccc
Confidence            110000                            0001111111111    000  00          000 12233456


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCC-CCCChhHHHHHHhhhc
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS-PATSYASRDLIRGLLV  647 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~-~~~s~~~~dLI~~lL~  647 (730)
                      .+||+.|+|||++.+..++.++|||++|++++|.++|.+||........+.+|.+....+|.. ...++++++++.++|.
T Consensus       995 ~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq~~f~ni~~~~~~~p~g~~~~s~~aq~~~~~ll~ 1074 (1205)
T KOG0606|consen  995 VVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETPQQIFENILNRDIPWPEGPEEGSYEAQDLINRLLT 1074 (1205)
T ss_pred             ccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcchhhhhhccccCCCCCCCCccccChhhhhhhhhhhc
Confidence            799999999999999999999999999999999999999999999999999999988888865 3568899999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCCcCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAEL  693 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~~~~  693 (730)
                      .+|.+|.++ .++.++..|+||+.++|+.+.....+++|.+.....
T Consensus      1075 ~~~~qr~~a-~~~~e~k~~~~~~~~~~~~l~~q~~~~~p~~~s~~d 1119 (1205)
T KOG0606|consen 1075 EEPTQRLGA-KGAAEVKGHPFFQDVDWENLALQKAEFVPQPESTQD 1119 (1205)
T ss_pred             cCchhccCc-ccccccccCCccCCCCccccccccCccCCCCCCCCc
Confidence            999999996 356689999999999999999899999999876443

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.89  E-value=5.2e-23  Score=215.42  Aligned_cols=216  Identities=24%  Similarity=0.380  Sum_probs=177.2

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~L  408 (730)
                      .-+|++.++||+|+||..++|+..-++.+||||.-.+...+     -.+..|.+..+.| ..+.|++.|.+.+.+.+-.|
T Consensus        27 G~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~A-----PQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiL  101 (449)
T KOG1165|consen   27 GPHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEA-----PQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNIL  101 (449)
T ss_pred             cccceeccccccCcceeeecccccccCceEEEEeccccCCc-----chHHHHHHHHHHHcCCCCCCceeeeccccchhhh
Confidence            35799999999999999999999999999999986554322     2356688888877 67999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC-----CceEEecccccccc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD-----GHIMLSDFDLSLRC  483 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~-----g~vKL~DFGlA~~~  483 (730)
                      |||++ |.+|.++..-. ++.|+...+..++.||+.-++|+|++.+|+|||||+|+||..-     ..|.|+|||+|+.+
T Consensus       102 VidLL-GPSLEDLFD~C-gR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~Y  179 (449)
T KOG1165|consen  102 VIDLL-GPSLEDLFDLC-GRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEY  179 (449)
T ss_pred             hhhhh-CcCHHHHHHHh-cCcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhh
Confidence            99999 99999887654 5689999999999999999999999999999999999999643     46999999999765


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ....+.                                                    ..                 ...
T Consensus       180 rDp~Tk----------------------------------------------------qH-----------------IPY  190 (449)
T KOG1165|consen  180 RDPKTK----------------------------------------------------QH-----------------IPY  190 (449)
T ss_pred             cCcccc----------------------------------------------------cc-----------------Ccc
Confidence            321110                                                    00                 011


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCC---Cccceeee
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG---NRATLFNV  621 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~---~~~~l~~i  621 (730)
                      ....+..||..||+--...|...+.+-|+=|||-++++.|-|..||.|..   +.+.+.+|
T Consensus       191 rE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKI  251 (449)
T KOG1165|consen  191 REHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKI  251 (449)
T ss_pred             ccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHh
Confidence            12346789999999999999999999999999999999999999999853   34444444

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.89  E-value=3.8e-23  Score=207.67  Aligned_cols=141  Identities=23%  Similarity=0.218  Sum_probs=109.8

Q ss_pred             EeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHH-----------------------HHHHHHHHHHHHHhcCCCC
Q 004790          336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRK-----------------------KLTRAQTEREILQLLDHPF  392 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~-----------------------~~~~~~~E~~IL~~L~HPn  392 (730)
                      ...||+|+||.||+|.+. +|+.||||+++........                       ......+|.++|..+.+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05147           2 NGCISTGKEANVYHATTA-NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAG   80 (190)
T ss_pred             CCccccccceEEEEEECC-CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            467999999999999997 8999999999764321111                       0123356999999998887


Q ss_pred             CccccccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHh-HhcceeecccCCccEEecCCCc
Q 004790          393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL-HMLGVVYRDLKPENVLVRDDGH  471 (730)
Q Consensus       393 IV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yL-H~~gIVHRDLKPeNILl~~~g~  471 (730)
                      +...+.... . ..||||||++|++|...+...  ..+++..+..++.||+.+|.|| |+.||+||||||+|||++ ++.
T Consensus        81 v~~p~~~~~-~-~~~iVmE~i~g~~l~~~~~~~--~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~-~~~  155 (190)
T cd05147          81 IPCPEPILL-K-SHVLVMEFIGDDGWAAPRLKD--APLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH-DGK  155 (190)
T ss_pred             CCCCcEEEe-c-CCEEEEEEeCCCCCcchhhhc--CCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE-CCc
Confidence            754333222 2 238999999888776543222  4689999999999999999999 799999999999999998 588


Q ss_pred             eEEeccccccc
Q 004790          472 IMLSDFDLSLR  482 (730)
Q Consensus       472 vKL~DFGlA~~  482 (730)
                      ++|+|||+|..
T Consensus       156 v~LiDFG~a~~  166 (190)
T cd05147         156 LYIIDVSQSVE  166 (190)
T ss_pred             EEEEEcccccc
Confidence            99999999853

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.87  E-value=4.9e-22  Score=199.00  Aligned_cols=142  Identities=20%  Similarity=0.213  Sum_probs=111.8

Q ss_pred             EeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhh-----------------------HHHHHHHHHHHHHHHhcCCCC
Q 004790          336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS-----------------------RKKLTRAQTEREILQLLDHPF  392 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~-----------------------~~~~~~~~~E~~IL~~L~HPn  392 (730)
                      ++.||+|+||+||+|++. +|+.||||+++......                       ......+.+|.+.+.++.|++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05145           2 NGCISTGKEANVYHARTG-DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAG   80 (190)
T ss_pred             CceeecCCCcEEEEEEcC-CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            468999999999999987 89999999998652110                       011233468999999999998


Q ss_pred             CccccccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCc
Q 004790          393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGH  471 (730)
Q Consensus       393 IV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~  471 (730)
                      |.....+....  .||||||++|+++.......  ..+++..+..++.|++.+|.+||. +||+||||||+|||++ ++.
T Consensus        81 i~~p~~~~~~~--~~lVmE~~~g~~~~~~~l~~--~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~~~  155 (190)
T cd05145          81 VPVPEPILLKK--NVLVMEFIGDDGSPAPRLKD--VPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-DGK  155 (190)
T ss_pred             CCCceEEEecC--CEEEEEEecCCCchhhhhhh--ccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-CCC
Confidence            85544433322  48999999888654432222  467888899999999999999999 9999999999999998 899


Q ss_pred             eEEecccccccc
Q 004790          472 IMLSDFDLSLRC  483 (730)
Q Consensus       472 vKL~DFGlA~~~  483 (730)
                      ++|+|||++...
T Consensus       156 ~~liDFG~a~~~  167 (190)
T cd05145         156 PYIIDVSQAVEL  167 (190)
T ss_pred             EEEEEcccceec
Confidence            999999999653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.87  E-value=3.9e-22  Score=205.40  Aligned_cols=140  Identities=19%  Similarity=0.200  Sum_probs=115.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHH------HHHHHHHHHhcCCCCCcccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTR------AQTEREILQLLDHPFLPTLYTHFE  401 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~------~~~E~~IL~~L~HPnIV~L~~~f~  401 (730)
                      +..++|++++.||.|+||.||++..  ++..+|||+++............      +.+|+..+.++.||+|+.+.+++.
T Consensus        28 ~l~~~y~~~~~l~~~~f~~v~l~~~--~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~  105 (232)
T PRK10359         28 FLSYNIKTIKVFRNIDDTKVSLIDT--DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYL  105 (232)
T ss_pred             HhhCceEEEEEecCCCceEEEEEec--CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeee
Confidence            3458999999999999999999766  35579999997654444444444      578999999999999999998876


Q ss_pred             cc--------ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceE
Q 004790          402 TD--------RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIM  473 (730)
Q Consensus       402 ~~--------~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vK  473 (730)
                      ..        ...||||||++|.+|.++.      .+++.    ...+|+.+|..||..||+||||||.|||++.+| ++
T Consensus       106 ~~~~~~~~~~~~~~lvmEyi~G~tL~~~~------~~~~~----~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~  174 (232)
T PRK10359        106 LAERKTLRYAHTYIMLIEYIEGVELNDMP------EISED----VKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG-LR  174 (232)
T ss_pred             ecccccccccCCeEEEEEEECCccHHHhh------hccHH----HHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC-EE
Confidence            43        3589999999999997762      23332    456999999999999999999999999999988 99


Q ss_pred             Eeccccc
Q 004790          474 LSDFDLS  480 (730)
Q Consensus       474 L~DFGlA  480 (730)
                      |+|||..
T Consensus       175 liDfg~~  181 (232)
T PRK10359        175 IIDLSGK  181 (232)
T ss_pred             EEECCCc
Confidence            9999976

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.87  E-value=8e-22  Score=208.82  Aligned_cols=236  Identities=25%  Similarity=0.304  Sum_probs=152.4

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC----------CCCcccccc--
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH----------PFLPTLYTH--  399 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H----------PnIV~L~~~--  399 (730)
                      .+...+.||.|+++.||.+++..|++.+|+|+............+.+.+|.-....+.+          -.++.-++.  
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~   92 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLR   92 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEE
T ss_pred             EEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEE
Confidence            45677899999999999999999999999999876554555556666666654444322          111111111  


Q ss_pred             -------ccccc--------eeeEEeeecCCCCccccccc---cCCC--CccHHHHHHhHHHHHHHHHHhHhcceeeccc
Q 004790          400 -------FETDR--------FSCLVMEYCPGGDLHTLRQR---QPGK--HFSEYAARFYAAEVLLALEYLHMLGVVYRDL  459 (730)
Q Consensus       400 -------f~~~~--------~l~LVmEy~~GGsL~~ll~~---~~~~--~lse~~a~~~~~qIl~AL~yLH~~gIVHRDL  459 (730)
                             ++...        +.+++|+-+ -+||..++..   ....  .+.......+..|++..+++||..||||+||
T Consensus        93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi  171 (288)
T PF14531_consen   93 IPGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHGDI  171 (288)
T ss_dssp             ETTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-
T ss_pred             EcCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceEeccc
Confidence                   11111        347788877 7788776442   1111  2223333445699999999999999999999


Q ss_pred             CCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccc
Q 004790          460 KPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKK  539 (730)
Q Consensus       460 KPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~  539 (730)
                      ||+|+|++.+|.++|+||+...+...                     .                                
T Consensus       172 ~~~nfll~~~G~v~Lg~F~~~~r~g~---------------------~--------------------------------  198 (288)
T PF14531_consen  172 KPENFLLDQDGGVFLGDFSSLVRAGT---------------------R--------------------------------  198 (288)
T ss_dssp             SGGGEEE-TTS-EEE--GGGEEETTE---------------------E--------------------------------
T ss_pred             ceeeEEEcCCCCEEEcChHHHeecCc---------------------e--------------------------------
Confidence            99999999999999999987744210                     0                                


Q ss_pred             cCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccC--------CCCCcceeechhHHHHHHhhCCCCCCC
Q 004790          540 TRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGE--------GHGSAVDWWTFGIFLHELLYGKTPFKG  611 (730)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~--------~~~~~sDIWSLG~iLyELltG~~PF~g  611 (730)
                                               .. ....+..|.+||.....        .++.+.|.|+||++||.|++|..||..
T Consensus       199 -------------------------~~-~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~  252 (288)
T PF14531_consen  199 -------------------------YR-CSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGL  252 (288)
T ss_dssp             -------------------------EE-GGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCC
T ss_pred             -------------------------ee-ccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCC
Confidence                                     00 01235678999987543        368899999999999999999999986


Q ss_pred             CCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCc
Q 004790          612 SGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR  653 (730)
Q Consensus       612 ~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R  653 (730)
                      ........      ..|.....+++..++||++||.+||.+|
T Consensus       253 ~~~~~~~~------~~f~~C~~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  253 SSPEADPE------WDFSRCRDMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             CGGGSTSG------GGGTTSS---HHHHHHHHHHT-SSGGGS
T ss_pred             CCcccccc------ccchhcCCcCHHHHHHHHHHccCCcccC
Confidence            54322221      1334444678999999999999999988

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.86  E-value=1.4e-22  Score=236.43  Aligned_cols=252  Identities=23%  Similarity=0.302  Sum_probs=180.4

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhh-hhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS-LASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~-~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +|...+.||.+.|=+|.+|++...  +|+||++-+.. ..+-....+...|++ ...++|||++.+.-+-++++..|||-
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG--~vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvR  100 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREG--LVVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVR  100 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCc--eEEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHH
Confidence            688899999999999999998754  49999986643 222222333344555 66779999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      +|+ ..+|++.+..+  .-+...+.++|+.||+.||.-+|..||+|+|||.|||||.....+.|+||.--+     |+..
T Consensus       101 qyv-khnLyDRlSTR--PFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFK-----PtYL  172 (1431)
T KOG1240|consen  101 QYV-KHNLYDRLSTR--PFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFK-----PTYL  172 (1431)
T ss_pred             HHH-hhhhhhhhccc--hHHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccC-----CccC
Confidence            999 77898877765  467888899999999999999999999999999999999999999999997432     1111


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                      .                                          ..+             |..  +....+ +      --
T Consensus       173 P------------------------------------------eDN-------------Pad--f~fFFD-T------Sr  188 (1431)
T KOG1240|consen  173 P------------------------------------------EDN-------------PAD--FTFFFD-T------SR  188 (1431)
T ss_pred             C------------------------------------------CCC-------------ccc--ceEEEe-c------CC
Confidence            1                                          000             000  000010 0      01


Q ss_pred             cCcccCChhhhccCC-----------CCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCC---CCCCCC
Q 004790          571 GTHEYLAPEIIKGEG-----------HGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFP---DSPATS  635 (730)
Q Consensus       571 GT~~Y~APEvl~g~~-----------~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p---~~~~~s  635 (730)
                      .-..|+|||.+....           ..++-||||+||+++||++ |++||.-.    +++..-.+.-..+   -...-+
T Consensus       189 RRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS----QL~aYr~~~~~~~e~~Le~Ied  264 (1431)
T KOG1240|consen  189 RRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS----QLLAYRSGNADDPEQLLEKIED  264 (1431)
T ss_pred             ceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH----HHHhHhccCccCHHHHHHhCcC
Confidence            123699999986522           4678999999999999996 89999521    1111111100000   001123


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      ..+|+||..|++.||.+|++    |++.|+.
T Consensus       265 ~~~Rnlil~Mi~rdPs~RlS----AedyL~~  291 (1431)
T KOG1240|consen  265 VSLRNLILSMIQRDPSKRLS----AEDYLQK  291 (1431)
T ss_pred             ccHHHHHHHHHccCchhccC----HHHHHHh
Confidence            46899999999999999999    7787765

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.85  E-value=4e-21  Score=194.85  Aligned_cols=203  Identities=20%  Similarity=0.184  Sum_probs=142.1

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHH-HHHHHHHHHHHHHhcC-CCCCccccccccccceeeEEe
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRK-KLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~-~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +.+...|++|+||+||++..  .+..++.+.+.......+. ....+++|+++|++|. |++|++++++    ...|++|
T Consensus         4 ~~~~~~l~~~~f~~v~~~~~--~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvm   77 (218)
T PRK12274          4 PAVNEPLKSDTFGRILLVRG--GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDR   77 (218)
T ss_pred             cccceeecCCCcceEEEeec--CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEE
Confidence            34668899999999998766  4556777766544332221 1235789999999995 5889999886    3469999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeeccc-CCccEEecCCCceEEecccccccccCCCcc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDL-KPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDL-KPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||+.|.+|...+..        . ...++.|++.+|++||++||+|||| ||+|||++.+|+++|+|||+|.........
T Consensus        78 eyI~G~~L~~~~~~--------~-~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~  148 (218)
T PRK12274         78 SYLAGAAMYQRPPR--------G-DLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARW  148 (218)
T ss_pred             eeecCccHHhhhhh--------h-hHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecCCcchH
Confidence            99999998653221        1 1347789999999999999999999 799999999999999999999532110000


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                      .                                       +++..          .+           +   ......--
T Consensus       149 ~---------------------------------------r~L~~----------rD-----------l---~~llk~~~  165 (218)
T PRK12274        149 M---------------------------------------RLLAR----------ED-----------L---RHLLKHKR  165 (218)
T ss_pred             H---------------------------------------HHHHH----------HH-----------H---HHHHHHHH
Confidence            0                                       00000          00           0   00000011


Q ss_pred             ccCcccCChhhhccC-CCC-CcceeechhHHHHHHhhCCCCCCCCC
Q 004790          570 VGTHEYLAPEIIKGE-GHG-SAVDWWTFGIFLHELLYGKTPFKGSG  613 (730)
Q Consensus       570 vGT~~Y~APEvl~g~-~~~-~~sDIWSLG~iLyELltG~~PF~g~~  613 (730)
                      ..++.|+.|+...-. ..+ .+.+|++.|+-+|.++|+..++-+.+
T Consensus       166 ~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~  211 (218)
T PRK12274        166 MYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWEDN  211 (218)
T ss_pred             hcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccccC
Confidence            368899999876543 233 67899999999999999999987654

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=1.6e-21  Score=207.91  Aligned_cols=272  Identities=23%  Similarity=0.302  Sum_probs=183.9

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCe-----------------------------------EEEEEEeehhhhh-
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRC-----------------------------------YFAMKVMDKASLA-  370 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~-----------------------------------~vAvKvi~k~~~~-  370 (730)
                      .+.+++|++...||+|.-..||.|+....+.                                   +.|||+|-.-... 
T Consensus       153 kFtiddyeiG~~igkGC~AaVY~A~~~~dg~~le~~~~t~~~pgf~p~ts~p~e~~q~~~p~~~aFPLAiKmMfN~~~~s  232 (598)
T KOG4158|consen  153 KFTIDDYEIGEFIGKGCNAAVYSARLANDGSDLESSGNTHYGPGFNPVTSIPAEIPQVSKPAQKAFPLAIKMMFNFEHDS  232 (598)
T ss_pred             ccchhhhcccchhhccchhhhhhhhcCCCcccccccCCCCcCCCcCCCcCCcccCCcccCccccccchHHHHhcccccCC
Confidence            3556899999999999999999987653110                                   2567765321111 


Q ss_pred             -hHHHHHHHHHHHH------HH--------H--------hcCCCCCccccccccc-------------------------
Q 004790          371 -SRKKLTRAQTERE------IL--------Q--------LLDHPFLPTLYTHFET-------------------------  402 (730)
Q Consensus       371 -~~~~~~~~~~E~~------IL--------~--------~L~HPnIV~L~~~f~~-------------------------  402 (730)
                       +...++...+|.-      .+        +        .-.|||||+++.+|.+                         
T Consensus       233 ~~~~iL~sM~~ElvPa~~~a~~~e~~~~t~R~l~nqtvhLa~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~  312 (598)
T KOG4158|consen  233 GDAHILKSMGNELVPAPNAAKLLEGQMGTFRPLPNQTVHLAKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGA  312 (598)
T ss_pred             chHHHHHHhhhhccCcchhhhhcccccceeeeCCCCCcccCCCCCEEeehhhhhhhhccCCchhhhCcccccceeccccc
Confidence             1111111112210      01        1        1269999999998843                         


Q ss_pred             --cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec--CCC--ceEEec
Q 004790          403 --DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR--DDG--HIMLSD  476 (730)
Q Consensus       403 --~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~--~~g--~vKL~D  476 (730)
                        ...+||||.-. .-+|+.++-.+   ..+-...+-+++|+++|+.|||++||.|||||.+||||.  +|+  .+.|+|
T Consensus       313 g~~~tlylvMkrY-~~tLr~yl~~~---~~s~r~~~~~laQlLEav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaD  388 (598)
T KOG4158|consen  313 GEPKTLYLVMKRY-RQTLREYLWTR---HRSYRTGRVILAQLLEAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVAD  388 (598)
T ss_pred             CCCceEEEehhcc-hhhHHHHHhcC---CCchHHHHHHHHHHHHHHHHHHHccchhhcccccceEEEecCCCCcEEEEcc
Confidence              35689999988 66888887765   577788889999999999999999999999999999994  343  689999


Q ss_pred             ccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcc
Q 004790          477 FDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPE  556 (730)
Q Consensus       477 FGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (730)
                      ||.+..+...  .... .+.+                                                           
T Consensus       389 FGCcLAd~~h--Glql-py~S-----------------------------------------------------------  406 (598)
T KOG4158|consen  389 FGCCLADDNH--GLQL-PYES-----------------------------------------------------------  406 (598)
T ss_pred             cceeeecccc--cccc-cccc-----------------------------------------------------------
Confidence            9987432110  0000 0000                                                           


Q ss_pred             cccccccccccccccCcccCChhhhccCC------CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC-
Q 004790          557 LVAEPTAARSMSFVGTHEYLAPEIIKGEG------HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP-  629 (730)
Q Consensus       557 ~~~e~~~~~~~s~vGT~~Y~APEvl~g~~------~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p-  629 (730)
                              ..-..-|.-..||||+....+      -..++|.|+.|.+.||++...-||++.+..-.-.+-. ++-.+| 
T Consensus       407 --------~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Y-qe~qLPa  477 (598)
T KOG4158|consen  407 --------DEVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTY-QESQLPA  477 (598)
T ss_pred             --------ccccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhhh-hhhhCCC
Confidence                    001124666789999987543      1358999999999999999999999854321111111 122222 


Q ss_pred             CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          630 DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       630 ~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      .+..++..+++|+..+|..||.+|++- +.|+.+++---|..-+|
T Consensus       478 lp~~vpp~~rqlV~~lL~r~pskRvsp-~iAANvl~LsLw~~~~~  521 (598)
T KOG4158|consen  478 LPSRVPPVARQLVFDLLKRDPSKRVSP-NIAANVLNLSLWRMGED  521 (598)
T ss_pred             CcccCChHHHHHHHHHhcCCccccCCc-cHHHhHHHHHHhcCchH
Confidence            335688999999999999999999994 45777777665555554

>PRK10345 hypothetical protein; Provisional

Probab=99.83  E-value=2e-20  Score=190.99  Aligned_cols=134  Identities=20%  Similarity=0.246  Sum_probs=106.8

Q ss_pred             EeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-----CCCCCccccccccccc---eee
Q 004790          336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-----DHPFLPTLYTHFETDR---FSC  407 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-----~HPnIV~L~~~f~~~~---~l~  407 (730)
                      .+.||+|+||.||.  +..+... +||++.....   .....+.+|+.+++.+     +||||+++|++++++.   .+|
T Consensus         7 ~~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~~---~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~   80 (210)
T PRK10345          7 QSPLGTGRHRKCYA--HPEDAQR-CIKIVYHRGD---GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVY   80 (210)
T ss_pred             cceecCCCceEEEE--CCCCcCe-EEEEEecccc---chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEE
Confidence            46799999999995  6666655 6998876432   2335689999999999     6799999999999873   434


Q ss_pred             -EEeee--cCCCCccccccccCCCCccHHHHHHhHHHHHHHH-HHhHhcceeecccCCccEEecC----CCceEEecccc
Q 004790          408 -LVMEY--CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL-EYLHMLGVVYRDLKPENVLVRD----DGHIMLSDFDL  479 (730)
Q Consensus       408 -LVmEy--~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL-~yLH~~gIVHRDLKPeNILl~~----~g~vKL~DFGl  479 (730)
                       +||||  +.+++|.+++.+.   .+++.  ..++.|++.++ +|||+++||||||||+|||++.    ++.++|+||+-
T Consensus        81 ~~I~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G  155 (210)
T PRK10345         81 DVIADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIG  155 (210)
T ss_pred             EEEecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCC
Confidence             78999  5579999998653   46666  35678888888 9999999999999999999974    34899999544


Q ss_pred             c
Q 004790          480 S  480 (730)
Q Consensus       480 A  480 (730)
                      +
T Consensus       156 ~  156 (210)
T PRK10345        156 E  156 (210)
T ss_pred             C
Confidence            4

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=2e-20  Score=191.37  Aligned_cols=243  Identities=18%  Similarity=0.301  Sum_probs=201.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +.+++..++-+|.+.-.|..|+|+++++.  ++.|+++...... ..-..++.|.--|+.+.||||+.+++.+....++.
T Consensus       187 id~~~lnl~tkl~e~hsgelwrgrwqgnd--ivakil~vr~~t~-risrdfneefp~lrifshpnilpvlgacnsppnlv  263 (448)
T KOG0195|consen  187 IDVSSLNLITKLAESHSGELWRGRWQGND--IVAKILNVREVTA-RISRDFNEEFPALRIFSHPNILPVLGACNSPPNLV  263 (448)
T ss_pred             cchhhhhhhhhhccCCCcccccccccCcc--hhhhhhhhhhcch-hhcchhhhhCcceeeecCCchhhhhhhccCCCCce
Confidence            55677888899999999999999998776  6778886655443 33356888999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc--eeecccCCccEEecCCCceEE--ecccccccc
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG--VVYRDLKPENVLVRDDGHIML--SDFDLSLRC  483 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g--IVHRDLKPeNILl~~~g~vKL--~DFGlA~~~  483 (730)
                      ++..||+-|+|+.+++.+.+-..+..++..++.+|+.|+.|||+..  |.---|....++||++-+.+|  +|--++.++
T Consensus       264 ~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltarismad~kfsfqe  343 (448)
T KOG0195|consen  264 IISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQE  343 (448)
T ss_pred             EeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheecccceeeeec
Confidence            9999999999999999887777888999999999999999999875  444468888899988765444  343322110


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                                                                                                      
T Consensus       344 --------------------------------------------------------------------------------  343 (448)
T KOG0195|consen  344 --------------------------------------------------------------------------------  343 (448)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCcccCChhhhccCCCC---CcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHG---SAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRD  640 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~---~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~d  640 (730)
                         ....-.|.||+||.+...+-+   .++|+|||+++||||.|...||....+.+.-.+|.-+.++...++.++.....
T Consensus       344 ---~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmkialeglrv~ippgis~hm~k  420 (448)
T KOG0195|consen  344 ---VGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKIALEGLRVHIPPGISRHMNK  420 (448)
T ss_pred             ---cccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhhhhccccccCCCCccHHHHH
Confidence               001346889999999887643   57999999999999999999999988888777777777777777899999999


Q ss_pred             HHHhhhcCCCCCcCCc
Q 004790          641 LIRGLLVKEPQHRLGV  656 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~  656 (730)
                      |+.-|+..||.+||.+
T Consensus       421 lm~icmnedpgkrpkf  436 (448)
T KOG0195|consen  421 LMNICMNEDPGKRPKF  436 (448)
T ss_pred             HHHHHhcCCCCcCCCc
Confidence            9999999999999996

>smart00090 RIO RIO-like kinase

Probab=99.80  E-value=1.7e-19  Score=187.40  Aligned_cols=144  Identities=24%  Similarity=0.234  Sum_probs=113.3

Q ss_pred             CeEEEeEEccCCcEEEEEEE-ECCCCeEEEEEEeehhhhhh---------------------HHHHHHHHHHHHHHHhcC
Q 004790          332 HFRLLKRLGCGDIGSVYLSE-LSSTRCYFAMKVMDKASLAS---------------------RKKLTRAQTEREILQLLD  389 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~-~~~t~~~vAvKvi~k~~~~~---------------------~~~~~~~~~E~~IL~~L~  389 (730)
                      .|++.+.||+|+||.||+|. +..+|+.||||+++......                     ......+.+|.+++..+.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            48899999999999999999 67789999999997542110                     011234678999999997


Q ss_pred             CC--CCccccccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc-eeecccCCccEEe
Q 004790          390 HP--FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG-VVYRDLKPENVLV  466 (730)
Q Consensus       390 HP--nIV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g-IVHRDLKPeNILl  466 (730)
                      +.  .++++++.    ...||||||++|++|..+....  ..+.+..++.++.||+.+|.+||.+| |+||||||+|||+
T Consensus       109 ~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli  182 (237)
T smart00090      109 EAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKD--VEPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNILV  182 (237)
T ss_pred             hcCCCCCeeeEe----cCceEEEEEecCCccccccccc--CCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEE
Confidence            53  33444432    2358999999998887654322  34666777889999999999999999 9999999999999


Q ss_pred             cCCCceEEeccccccc
Q 004790          467 RDDGHIMLSDFDLSLR  482 (730)
Q Consensus       467 ~~~g~vKL~DFGlA~~  482 (730)
                      + ++.++|+|||++..
T Consensus       183 ~-~~~i~LiDFg~a~~  197 (237)
T smart00090      183 H-DGKVVIIDVSQSVE  197 (237)
T ss_pred             E-CCCEEEEEChhhhc
Confidence            9 88999999999854

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=2.2e-20  Score=217.01  Aligned_cols=263  Identities=25%  Similarity=0.379  Sum_probs=209.9

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECC-CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSS-TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~-t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~L  408 (730)
                      ..|.+.+.||+|+|+.|-+..... +...+|+|.+.... .......++..|..+-..+. |.|++.+++.....+..++
T Consensus        20 ~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~-~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~   98 (601)
T KOG0590|consen   20 SQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPP-KSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLL   98 (601)
T ss_pred             ccccccccccccccchhhhhhhcCCCcceeeccCCCCCC-CccchhhhcCccccccccccccccccccCCccCCCccccc
Confidence            458888889999999999987743 45567888776554 33455566778888888886 9999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhH-hcceeecccCCccEEecCCC-ceEEecccccccccCC
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH-MLGVVYRDLKPENVLVRDDG-HIMLSDFDLSLRCAVS  486 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH-~~gIVHRDLKPeNILl~~~g-~vKL~DFGlA~~~~~~  486 (730)
                      +++|..|++++..+........+...+.+|+.|+..+|.|+| ..++.||||||+|.+++..+ .++++|||+|..+...
T Consensus        99 ~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~  178 (601)
T KOG0590|consen   99 SLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRNK  178 (601)
T ss_pred             ccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCchhhcccccc
Confidence            999999999998774322236778889999999999999999 99999999999999999999 9999999999532110


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                     .+                                                          .....
T Consensus       179 ---------------~g----------------------------------------------------------~~~~~  185 (601)
T KOG0590|consen  179 ---------------NG----------------------------------------------------------AERSL  185 (601)
T ss_pred             ---------------CC----------------------------------------------------------cceee
Confidence                           00                                                          00011


Q ss_pred             ccccc-CcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccce-eeeeccc--ccCCCCCCCChhHHHH
Q 004790          567 MSFVG-THEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL-FNVVGQQ--LRFPDSPATSYASRDL  641 (730)
Q Consensus       567 ~s~vG-T~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l-~~i~~~~--~~~p~~~~~s~~~~dL  641 (730)
                      ...+| ++.|+|||...+.. .+...|+||+|+++.-|++|..|+......... .......  .....+..++....++
T Consensus       186 ~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (601)
T KOG0590|consen  186 KDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSISDQAHDL  265 (601)
T ss_pred             ecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccceeecccccccccCccccCChhhhhc
Confidence            23478 99999999999965 478999999999999999999999876544333 2222222  2344556778899999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      +.++|..+|..|.+    .+++..+||+..
T Consensus       266 l~k~l~~~~~~r~s----~~~~~~d~~~~~  291 (601)
T KOG0590|consen  266 LHKILKENPSNRLS----IEELKLDNWLSS  291 (601)
T ss_pred             ccccccCCchhccc----cccccccccccc
Confidence            99999999999999    489999999998

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=3.2e-19  Score=212.27  Aligned_cols=201  Identities=26%  Similarity=0.391  Sum_probs=158.1

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC---CCCCcccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD---HPFLPTLYTHFE  401 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~---HPnIV~L~~~f~  401 (730)
                      ...++...|.|-+.||+|+||+||+|.... ++.||||+=+......      +.-=.+++.+|+   -+-|..++.++.
T Consensus       692 ~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~-~~~~alK~e~P~~~WE------fYI~~q~~~RLk~~~~~~~~~~~~a~~  764 (974)
T KOG1166|consen  692 EFEVGGEKFCISKEIGEGSYGSVYVATHSN-GKLVALKVEKPPNPWE------FYICLQVMERLKPQMLPSIMHISSAHV  764 (974)
T ss_pred             eeeecceeEEEEeeeccccceEEEEeecCC-CcEEEEEeecCCCcee------eeehHHHHHhhchhhhcchHHHHHHHc
Confidence            345778899999999999999999999987 9999999865443221      111122333343   245556666666


Q ss_pred             ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-------CCceEE
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-------DGHIML  474 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-------~g~vKL  474 (730)
                      -.+..+||+||.+.|+|.++++.  .+.+++..+.+++.|||.-|++||..+|||+||||+|+||..       .--++|
T Consensus       765 ~~~~S~lv~ey~~~Gtlld~~N~--~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~l  842 (974)
T KOG1166|consen  765 FQNASVLVSEYSPYGTLLDLINT--NKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYL  842 (974)
T ss_pred             cCCcceeeeeccccccHHHhhcc--CCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEE
Confidence            66677899999999999999884  478999999999999999999999999999999999999963       235999


Q ss_pred             ecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCC
Q 004790          475 SDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTL  554 (730)
Q Consensus       475 ~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (730)
                      +|||-+..+..-+                                                                   
T Consensus       843 IDfG~siDm~lfp-------------------------------------------------------------------  855 (974)
T KOG1166|consen  843 IDFGRSIDMKLFP-------------------------------------------------------------------  855 (974)
T ss_pred             EecccceeeeEcC-------------------------------------------------------------------
Confidence            9999884432111                                                                   


Q ss_pred             cccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCC
Q 004790          555 PELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTP  608 (730)
Q Consensus       555 ~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~P  608 (730)
                             ...+....++|-.+-.+|.+.|..+++.+|.|.|+.++|-||.|+.-
T Consensus       856 -------~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~  902 (974)
T KOG1166|consen  856 -------DGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYM  902 (974)
T ss_pred             -------CCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHH
Confidence                   01122345788899999999999999999999999999999999753

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.78  E-value=1e-18  Score=176.17  Aligned_cols=136  Identities=22%  Similarity=0.252  Sum_probs=112.9

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhh-----hhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL-----ASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~-----~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      +.||+|++|.||+|.+  .+..+++|+......     .......++.+|++++..+.|++|+....++.+....++|||
T Consensus         2 ~~l~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e   79 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVME   79 (211)
T ss_pred             cccccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEE
Confidence            5799999999999988  455689997653221     112233567889999999999999887777777788899999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      |++|++|.+++....     . ....++.+|+.+|.+||+.|++||||+|.|||++ ++.++|+|||++.
T Consensus        80 ~~~G~~L~~~~~~~~-----~-~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~  142 (211)
T PRK14879         80 YIEGEPLKDLINSNG-----M-EELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAE  142 (211)
T ss_pred             EeCCcCHHHHHHhcc-----H-HHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCccc
Confidence            999999998876431     1 6778899999999999999999999999999999 7899999999984

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.76  E-value=1.8e-18  Score=173.78  Aligned_cols=139  Identities=24%  Similarity=0.206  Sum_probs=109.0

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhh-------------------HHHHHHHHHHHHHHHhcCCCC
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS-------------------RKKLTRAQTEREILQLLDHPF  392 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~-------------------~~~~~~~~~E~~IL~~L~HPn  392 (730)
                      .|.+.+.||.|+||.||++.+. +++.||||+++......                   ......+.+|..++..+.|++
T Consensus        16 ~~~~~~~i~~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   94 (198)
T cd05144          16 VESLGNQIGVGKESDVYLALDP-DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEG   94 (198)
T ss_pred             hhhcCCccccCcceEEEEEEcC-CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcC
Confidence            3888899999999999999885 78899999976532100                   011123678899999998874


Q ss_pred             --CccccccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC
Q 004790          393 --LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG  470 (730)
Q Consensus       393 --IV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g  470 (730)
                        ++..++.    ...|+||||++|++|..+...        .....++.+|+.++.++|+.||+||||||+|||++.++
T Consensus        95 i~v~~~~~~----~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~~  162 (198)
T cd05144          95 FPVPKPIDW----NRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDDDE  162 (198)
T ss_pred             CCCCceeec----CCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEcCCC
Confidence              4444432    345899999999998765431        23456889999999999999999999999999999999


Q ss_pred             ceEEecccccccc
Q 004790          471 HIMLSDFDLSLRC  483 (730)
Q Consensus       471 ~vKL~DFGlA~~~  483 (730)
                      .++|+|||++..+
T Consensus       163 ~~~liDfg~~~~~  175 (198)
T cd05144         163 KIYIIDWPQMVST  175 (198)
T ss_pred             cEEEEECCccccC
Confidence            9999999998543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.75  E-value=4.2e-18  Score=170.27  Aligned_cols=133  Identities=23%  Similarity=0.240  Sum_probs=106.3

Q ss_pred             EEccCCcEEEEEEEECCCCeEEEEEEeehhhh-----hhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeee
Q 004790          338 RLGCGDIGSVYLSELSSTRCYFAMKVMDKASL-----ASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEY  412 (730)
Q Consensus       338 ~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~-----~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy  412 (730)
                      .||+|+||.||++.+.  +..+++|+......     .......++.+|+++++.+.|+++....-++......++||||
T Consensus         1 ~ig~G~~~~vy~~~~~--~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   78 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFL--GLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEY   78 (199)
T ss_pred             CCCCCceEEEEEeecC--CccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEE
Confidence            3899999999999854  46799998643221     1222346778999999999988766555555566677999999


Q ss_pred             cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          413 CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       413 ~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      ++|++|..++....   .      .++.||+.+|.+||+.|++||||||.|||++ ++.++|+|||++..
T Consensus        79 ~~g~~l~~~~~~~~---~------~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        79 IEGKPLKDVIEEGN---D------ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             ECCccHHHHHhhcH---H------HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            99999988765421   1      6789999999999999999999999999999 89999999999843

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.74  E-value=5.5e-18  Score=195.63  Aligned_cols=139  Identities=23%  Similarity=0.222  Sum_probs=111.9

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehh-----hhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKA-----SLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~-----~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      ..|...+.||+|+||+||++.+....  +++|+....     .........++.+|+++++.++|++|+..+.++.+...
T Consensus       333 ~~~~~~~~iG~G~~g~Vy~~~~~~~~--~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~  410 (535)
T PRK09605        333 RRKIPDHLIGKGAEADIKKGEYLGRD--AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEE  410 (535)
T ss_pred             cccCccceeccCCcEEEEEEeecCcc--ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCC
Confidence            44567899999999999999886654  333432111     11222334678899999999999999988777777777


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      .|+||||++|++|.+++.          ....++.||+.+|.|||++||+||||||+|||+ .++.++|+|||+++.
T Consensus       411 ~~lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        411 KTIVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             CEEEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCccccc
Confidence            899999999999987654          346688999999999999999999999999999 678999999999854

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=2.6e-19  Score=197.97  Aligned_cols=185  Identities=29%  Similarity=0.411  Sum_probs=136.1

Q ss_pred             ceeeEEeeecCCCCccccccc-cCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQR-QPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~-~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      .++|+.|++|.-.+|.+++.+ ..+...+......++.|+..|++|   +|.+||||||.||++..+..+||.||||...
T Consensus       329 ~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~~ihrdlkp~nif~~~d~q~kIgDFgl~ts  405 (516)
T KOG1033|consen  329 VYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KGLIHRDLKPSNIFFSDDDQLKIGDFGLVTS  405 (516)
T ss_pred             cchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---ccchhhhccccccccccchhhhhhhhhheee
Confidence            368999999999999998864 334456677888899999999999   9999999999999999999999999999854


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ....++                       ..                                               +.
T Consensus       406 ~~~~~~-----------------------~~-----------------------------------------------~~  415 (516)
T KOG1033|consen  406 QDKDET-----------------------VA-----------------------------------------------PA  415 (516)
T ss_pred             cccCCc-----------------------cc-----------------------------------------------ch
Confidence            321110                       00                                               01


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      .+..+..+||++||+||.|.+..|+.++||||||+|||||++ =.+.|....   ++..+-.+.++...... ..+-.+|
T Consensus       416 ~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er~~---t~~d~r~g~ip~~~~~d-~p~e~~l  491 (516)
T KOG1033|consen  416 AASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFERIA---TLTDIRDGIIPPEFLQD-YPEEYTL  491 (516)
T ss_pred             hhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHHHH---hhhhhhcCCCChHHhhc-CcHHHHH
Confidence            123345689999999999999999999999999999999997 444443322   22222223322111122 2344589


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      +++||...|.+||+    +.+.-.|.|.
T Consensus       492 l~~lls~~p~~RP~----~~~~~~~~~~  515 (516)
T KOG1033|consen  492 LQQLLSPSPEERPS----AIEVALHEFL  515 (516)
T ss_pred             HHHhcCCCcccCch----HHHHhhhhhc
Confidence            99999999999997    4555556554

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.73  E-value=1.3e-17  Score=165.01  Aligned_cols=138  Identities=22%  Similarity=0.218  Sum_probs=99.8

Q ss_pred             EeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHH---------------------HHHHHHHHHHhcCCCC--
Q 004790          336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLT---------------------RAQTEREILQLLDHPF--  392 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~---------------------~~~~E~~IL~~L~HPn--  392 (730)
                      ++.||+|+||+||+|.+. ++..||||+++...........                     ....|.+++..+.+..  
T Consensus         2 ~~~lg~G~~g~Vy~a~~~-~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~   80 (187)
T cd05119           2 GGPIGTGKEADVYLALDG-DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVP   80 (187)
T ss_pred             CcccccccceeEEEEECC-CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCC
Confidence            467999999999999987 7889999998754322111111                     1235666666664432  


Q ss_pred             CccccccccccceeeEEeeecCCCCcccc-ccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCC
Q 004790          393 LPTLYTHFETDRFSCLVMEYCPGGDLHTL-RQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDG  470 (730)
Q Consensus       393 IV~L~~~f~~~~~l~LVmEy~~GGsL~~l-l~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g  470 (730)
                      +++.+++.    ..||||||++|+.+... +...   .. ...++.++.+++.++.++|. .||+||||||+||+++ ++
T Consensus        81 ~~~~~~~~----~~~lv~e~~~g~~~~~~~l~~~---~~-~~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~~  151 (187)
T cd05119          81 VPKPIDLN----RHVLVMEFIGGDGIPAPRLKDV---RL-LEDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-DG  151 (187)
T ss_pred             CCceEecC----CCEEEEEEeCCCCccChhhhhh---hh-cccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-CC
Confidence            44444432    35899999999665321 2211   11 15678899999999999999 9999999999999999 89


Q ss_pred             ceEEecccccccc
Q 004790          471 HIMLSDFDLSLRC  483 (730)
Q Consensus       471 ~vKL~DFGlA~~~  483 (730)
                      .++|+|||.+...
T Consensus       152 ~~~liDfg~a~~~  164 (187)
T cd05119         152 KVYIIDVPQAVEI  164 (187)
T ss_pred             cEEEEECcccccc
Confidence            9999999998543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.68  E-value=2.7e-16  Score=146.64  Aligned_cols=132  Identities=28%  Similarity=0.320  Sum_probs=111.9

Q ss_pred             EEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC--CCCccccccccccceeeEEeee
Q 004790          335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH--PFLPTLYTHFETDRFSCLVMEY  412 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H--PnIV~L~~~f~~~~~l~LVmEy  412 (730)
                      +++.||.|.++.||++...+  ..+++|++.....     ...+.+|..+++.+.|  .++++++.++...+..|++|||
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~--~~~~iK~~~~~~~-----~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~   74 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD--EDYVLKINPSREK-----GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEW   74 (155)
T ss_pred             cceecccccccceEEEEecC--CeEEEEecCCCCc-----hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEe
Confidence            45789999999999999865  5799999866432     3457789999999976  5999999999888899999999


Q ss_pred             cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhc---ceeecccCCccEEecCCCceEEeccccccc
Q 004790          413 CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML---GVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       413 ~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~---gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      +.|+.+..+         +......++.+++.+|.+||..   +++|+||||+|||++..+.++|+|||++..
T Consensus        75 ~~g~~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          75 IEGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             cCCeecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            998887654         3445566789999999999984   799999999999999989999999999853

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.67  E-value=2.4e-16  Score=164.09  Aligned_cols=137  Identities=23%  Similarity=0.288  Sum_probs=103.8

Q ss_pred             eEEc-cCCcEEEEEEEECCCCeEEEEEEeehhhhh----------hHHHHHHHHHHHHHHHhcCCCCC--cccccccccc
Q 004790          337 KRLG-CGDIGSVYLSELSSTRCYFAMKVMDKASLA----------SRKKLTRAQTEREILQLLDHPFL--PTLYTHFETD  403 (730)
Q Consensus       337 ~~LG-~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~----------~~~~~~~~~~E~~IL~~L~HPnI--V~L~~~f~~~  403 (730)
                      ..|| .|+.|+||+++..  +..++||.+.+....          ......++.+|++++..|.|++|  +..+++...+
T Consensus        37 ~~lg~~~g~gtv~~v~~~--~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTP--GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             ceeecCCCCccEEEEEeC--CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            3576 7888888888775  457899988643221          11233568899999999998875  6666654332


Q ss_pred             -ce---eeEEeeecCC-CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccc
Q 004790          404 -RF---SCLVMEYCPG-GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFD  478 (730)
Q Consensus       404 -~~---l~LVmEy~~G-GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFG  478 (730)
                       ..   .+|||||++| .+|..++...   .+++..    +.||+.+|.+||++||+||||||+|||++.++.++|+|||
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~---~l~~~~----~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg  187 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQEA---PLSEEQ----WQAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFD  187 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhcC---CCCHHH----HHHHHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECC
Confidence             22   3599999997 6888876542   455443    5689999999999999999999999999999999999999


Q ss_pred             cccc
Q 004790          479 LSLR  482 (730)
Q Consensus       479 lA~~  482 (730)
                      .+..
T Consensus       188 ~~~~  191 (239)
T PRK01723        188 RGEL  191 (239)
T ss_pred             Cccc
Confidence            8854

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.54  E-value=1.3e-14  Score=163.22  Aligned_cols=198  Identities=20%  Similarity=0.255  Sum_probs=146.9

Q ss_pred             HHhcCCCCCccccccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcce-eecccCCcc
Q 004790          385 LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGV-VYRDLKPEN  463 (730)
Q Consensus       385 L~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gI-VHRDLKPeN  463 (730)
                      |+.+.|.|+.++++.+.++...+.|.+||..|+|.+.+... ...++.--...++++|+.||.|||.--| .|+.|+..|
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~-~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~n   79 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNE-DIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSN   79 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhcc-ccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeecccc
Confidence            45689999999999999999999999999999999988763 3456777777789999999999997655 999999999


Q ss_pred             EEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCC
Q 004790          464 VLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKP  543 (730)
Q Consensus       464 ILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (730)
                      .+++..+.+||+|||+......                           .|..                           
T Consensus        80 Clvd~~w~lklt~~Gl~~~~~~---------------------------~~~~---------------------------  105 (484)
T KOG1023|consen   80 CLVDSRWVLKLTDFGLNSLLEE---------------------------TAEP---------------------------  105 (484)
T ss_pred             ceeeeeEEEEechhhhcccccc---------------------------cccc---------------------------
Confidence            9999999999999999732100                           0000                           


Q ss_pred             CccCCCCCCCCcccccccccccccccccCcccCChhhhccCC-------CCCcceeechhHHHHHHhhCCCCCCCCCCcc
Q 004790          544 RSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEG-------HGSAVDWWTFGIFLHELLYGKTPFKGSGNRA  616 (730)
Q Consensus       544 ~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~-------~~~~sDIWSLG~iLyELltG~~PF~g~~~~~  616 (730)
                                          .......-...|.|||.+.+..       -+.+.|+||+|+++||+++.+.||.......
T Consensus       106 --------------------~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~  165 (484)
T KOG1023|consen  106 --------------------EAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVE  165 (484)
T ss_pred             --------------------cccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccccccccC
Confidence                                0000011234689999998752       2567999999999999999999998643322


Q ss_pred             ----ceeeeec-ccc-cCCCC---CCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          617 ----TLFNVVG-QQL-RFPDS---PATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       617 ----~l~~i~~-~~~-~~p~~---~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                          .+..+.+ +.. ..|..   .....++..+++.||..+|..||+++
T Consensus       166 ~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~~rPs~~  215 (484)
T KOG1023|consen  166 DPDEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEIPEKRPSIE  215 (484)
T ss_pred             ChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccChhhCccHH
Confidence                2222222 111 11111   13445688999999999999999974

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.51  E-value=1.8e-14  Score=165.27  Aligned_cols=144  Identities=19%  Similarity=0.253  Sum_probs=101.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhh-------------------------------HHHHHHH
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS-------------------------------RKKLTRA  378 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~-------------------------------~~~~~~~  378 (730)
                      +.+|.. +.||+|++|+||+|+++.+|+.||||+++......                               .+..+.+
T Consensus       119 F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l  197 (537)
T PRK04750        119 FDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTL  197 (537)
T ss_pred             HHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence            456776 78999999999999999889999999997432100                               0222334


Q ss_pred             HHHHHHHHhcCCCCCccccccccccc-------------eeeEEeeecCCCCccccc--ccc--CCCCccHHHHHHhHHH
Q 004790          379 QTEREILQLLDHPFLPTLYTHFETDR-------------FSCLVMEYCPGGDLHTLR--QRQ--PGKHFSEYAARFYAAE  441 (730)
Q Consensus       379 ~~E~~IL~~L~HPnIV~L~~~f~~~~-------------~l~LVmEy~~GGsL~~ll--~~~--~~~~lse~~a~~~~~q  441 (730)
                      .+|+++++..  .|+.++...|.+..             ..+|||||+.|+.|.++.  ...  ....+.+..+..|+.|
T Consensus       198 ~~ElD~~~Ea--~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Q  275 (537)
T PRK04750        198 HDELDLMREA--ANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQ  275 (537)
T ss_pred             HHhhCHHHHH--HHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            4555554444  35555554444333             345999999999997642  221  0114566666667777


Q ss_pred             HHHHHHHhHhcceeecccCCccEEecCCC----ceEEecccccccc
Q 004790          442 VLLALEYLHMLGVVYRDLKPENVLVRDDG----HIMLSDFDLSLRC  483 (730)
Q Consensus       442 Il~AL~yLH~~gIVHRDLKPeNILl~~~g----~vKL~DFGlA~~~  483 (730)
                      |+       ..|++|+|+||.||+++.+|    .++++|||++..+
T Consensus       276 if-------~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l  314 (537)
T PRK04750        276 VF-------RDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSL  314 (537)
T ss_pred             HH-------hCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEEC
Confidence            65       58999999999999999888    9999999998664

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=2.6e-14  Score=160.98  Aligned_cols=260  Identities=22%  Similarity=0.246  Sum_probs=194.7

Q ss_pred             CCeEEEeEEcc--CCcEEEEEEEE--CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccce
Q 004790          331 SHFRLLKRLGC--GDIGSVYLSEL--SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRF  405 (730)
Q Consensus       331 ~~y~il~~LG~--G~fG~Vyla~~--~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~  405 (730)
                      ..|.+.+.+|.  |.+|.||.+..  ..++..+|+|.-+... .....-.+-.+|....+.+ .|+|.++.+..++..+.
T Consensus       114 ~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~-s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~  192 (524)
T KOG0601|consen  114 QRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPF-SPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGI  192 (524)
T ss_pred             hhcccccccccCCCCCceeecccCCcccCCcccccccccCCC-CCccccccccchhhcccccCccccccccCcccccCCc
Confidence            45778889999  99999999999  8889999999743221 1111222234566666666 59999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHH----HHHHhHhcceeecccCCccEEecCC-CceEEeccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL----ALEYLHMLGVVYRDLKPENVLVRDD-GHIMLSDFDLS  480 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~----AL~yLH~~gIVHRDLKPeNILl~~~-g~vKL~DFGlA  480 (730)
                      +|+-+|+| |.+|..+... ....+++..++.++.++..    ||.++|..+++|-|+||+||++..+ ..++++|||+.
T Consensus       193 lfiqtE~~-~~sl~~~~~~-~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v  270 (524)
T KOG0601|consen  193 LFIQTELC-GESLQSYCHT-PCNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTDFGLV  270 (524)
T ss_pred             ceeeeccc-cchhHHhhhc-ccccCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCCccee
Confidence            99999999 6788776543 3456889999999999999    9999999999999999999999988 88999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ..+....-.                                        ..+    .                       
T Consensus       271 ~~i~~~~~~----------------------------------------~~~----~-----------------------  283 (524)
T KOG0601|consen  271 SKISDGNFS----------------------------------------SVF----K-----------------------  283 (524)
T ss_pred             EEccCCccc----------------------------------------cce----e-----------------------
Confidence            654211100                                        000    0                       


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCC--CCccceeeeecccccCCCCCCCChhH
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGS--GNRATLFNVVGQQLRFPDSPATSYAS  638 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~--~~~~~l~~i~~~~~~~p~~~~~s~~~  638 (730)
                          .....-|...|++||.+++. ++.+.|+++||.++.+..+|..++...  .....+.+..   +........+.++
T Consensus       284 ----~~~r~~~~~~Y~~ke~~~~l-~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~---ip~e~~~~~s~~l  355 (524)
T KOG0601|consen  284 ----VSKRPEGDCIYAAKELLNGL-ATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGY---IPLEFCEGGSSSL  355 (524)
T ss_pred             ----eeecCCCCceEeChhhhccc-cchHhhhcchhhhhHhhHhhcccccCCCCCCcccccccc---CchhhhcCcchhh
Confidence                00111356679999998765 789999999999999999998887654  3333333222   1112223456677


Q ss_pred             HHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          639 RDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       639 ~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ...+..|+..+|-.|++    ++.+++|++....
T Consensus       356 ~~~~~~~~d~~~~~~~~----~q~~~~l~~i~s~  385 (524)
T KOG0601|consen  356 RSVTSQMLDEDPRLRLT----AQILTALNVIHSK  385 (524)
T ss_pred             hhHHHHhcCcchhhhhH----HHHHhccccccch
Confidence            77999999999999999    7899999998854

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.45  E-value=2.6e-13  Score=153.15  Aligned_cols=140  Identities=23%  Similarity=0.242  Sum_probs=95.1

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH-------------------------------HHHH------HHH
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR-------------------------------KKLT------RAQ  379 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~-------------------------------~~~~------~~~  379 (730)
                      +.||.|++|+||+|+.+ +|+.||||+.+......-                               +...      .+.
T Consensus       123 ~plasaSigQVh~A~l~-~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       123 KPLAAASIAQVHRARLV-DGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             cceeeeehhheEEEEec-CCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            57999999999999986 578999999864311000                               0000      234


Q ss_pred             HHHHHHHhc-----CCCC--CccccccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHH-HHHHhHh
Q 004790          380 TEREILQLL-----DHPF--LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL-ALEYLHM  451 (730)
Q Consensus       380 ~E~~IL~~L-----~HPn--IV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~-AL~yLH~  451 (730)
                      +|...+.++     ++++  |+++|..+  ....+|||||++|++|.++...... .+   ....++.+++. .+..+|.
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~--~~~~vLvmE~i~G~~L~~~~~~~~~-~~---~~~~ia~~~~~~~l~ql~~  275 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDR--TSERVLTMEWIDGIPLSDIAALDEA-GL---DRKALAENLARSFLNQVLR  275 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhh--cCCceEEEEeECCcccccHHHHHhc-CC---CHHHHHHHHHHHHHHHHHh
Confidence            455555444     2333  33444333  3346899999999999886543211 11   12335555555 4678899


Q ss_pred             cceeecccCCccEEecCCCceEEecccccccc
Q 004790          452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       452 ~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      .|++|+|+||.||+++.+|.++|+|||++..+
T Consensus       276 ~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l  307 (437)
T TIGR01982       276 DGFFHADLHPGNIFVLKDGKIIALDFGIVGRL  307 (437)
T ss_pred             CCceeCCCCcccEEECCCCcEEEEeCCCeeEC
Confidence            99999999999999999999999999999664

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.41  E-value=6e-13  Score=129.06  Aligned_cols=128  Identities=23%  Similarity=0.289  Sum_probs=96.5

Q ss_pred             EeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCC-CccccccccccceeeEEeeecC
Q 004790          336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF-LPTLYTHFETDRFSCLVMEYCP  414 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPn-IV~L~~~f~~~~~l~LVmEy~~  414 (730)
                      ++.|+.|.++.||+++..  +..|++|+......    ......+|..+++.+.+.+ +++++.+..+  ..++||||++
T Consensus         3 ~~~l~~G~~~~vy~~~~~--~~~~~lK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~--~~~lv~e~i~   74 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA--NKKYVVRIPGNGTE----LLINRENEAENSKLAAEAGIGPKLYYFDPE--TGVLITEFIE   74 (170)
T ss_pred             eeecCCcccCceEEEEEC--CeEEEEEeCCCCcc----cccCHHHHHHHHHHHHHhCCCCceEEEeCC--CCeEEEEecC
Confidence            467899999999999875  56799999765421    1123467899999885544 4566655432  3579999999


Q ss_pred             CCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcce-----eecccCCccEEecCCCceEEeccccccc
Q 004790          415 GGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGV-----VYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       415 GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gI-----VHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      |.++... .      .   ....++.+++.+|..||..++     +|+|++|.|||++ ++.++|+|||.+..
T Consensus        75 G~~l~~~-~------~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          75 GSELLTE-D------F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             CCccccc-c------c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            9888643 0      1   113356799999999999885     9999999999999 67899999999843

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=3.4e-13  Score=152.07  Aligned_cols=253  Identities=21%  Similarity=0.278  Sum_probs=190.0

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEEC-CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELS-STRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDR  404 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~-~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~  404 (730)
                      .....+|.++..||.|.|+.|+....+ .+++.|++|-..+.......+ .....|+.+...+ -|.+++.++..|...+
T Consensus       261 s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~d-i~sl~ev~l~~~l~~~~~~~g~~~~W~~~r  339 (524)
T KOG0601|consen  261 SCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASD-IFSLGEVILEAILGSHLPSVGKNSSWSQLR  339 (524)
T ss_pred             eeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhh-hcchhhhhHhhHhhcccccCCCCCCccccc
Confidence            345678999999999999999998765 788899999886554333233 2345577777766 6999999999999888


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC-CceEEecccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD-GHIMLSDFDLSLRC  483 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~-g~vKL~DFGlA~~~  483 (730)
                      +.|+=.|||+++++..-+..  ...+.+...+.+..|++.++.++|++.++|+|+||+||++..+ +..++.|||+..++
T Consensus       340 ~~~ip~e~~~~~s~~l~~~~--~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~~  417 (524)
T KOG0601|consen  340 QGYIPLEFCEGGSSSLRSVT--SQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWTRL  417 (524)
T ss_pred             cccCchhhhcCcchhhhhHH--HHhcCcchhhhhHHHHHhccccccchhhhcccccccceeeccchhhhhcccccccccc
Confidence            99999999999988654322  1357888889999999999999999999999999999999876 78899999987432


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ...                                                                             
T Consensus       418 ~~~-----------------------------------------------------------------------------  420 (524)
T KOG0601|consen  418 AFS-----------------------------------------------------------------------------  420 (524)
T ss_pred             cee-----------------------------------------------------------------------------
Confidence            110                                                                             


Q ss_pred             ccccccccCc-cc-CChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHH
Q 004790          564 ARSMSFVGTH-EY-LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       564 ~~~~s~vGT~-~Y-~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                        ...+.++- .| .+++.+....+..++|++|||..++|.++|...-..   ......|..+.+  |..+.....++.+
T Consensus       421 --~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~---~~~~~~i~~~~~--p~~~~~~~~~q~~  493 (524)
T KOG0601|consen  421 --SGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSES---GVQSLTIRSGDT--PNLPGLKLQLQVL  493 (524)
T ss_pred             --cccccccccccccchhhccccccccccccccccccccccccCcccCcc---cccceeeecccc--cCCCchHHhhhhh
Confidence              01112222 33 356666667789999999999999999998765332   233344444433  3334445788899


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      .+.++..++..|+.    +.++..|.=|.
T Consensus       494 ~kv~~~~~~~~~~l----~~~l~~~~~~~  518 (524)
T KOG0601|consen  494 LKVMINPDRKRRPS----AVELSLHSEFY  518 (524)
T ss_pred             hhhhcCCccccchh----hhhhcccchhh
Confidence            99999999999998    56777776654

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.37  E-value=4.5e-12  Score=128.18  Aligned_cols=138  Identities=19%  Similarity=0.179  Sum_probs=100.4

Q ss_pred             eEEccCCcEEEEEEEECC------CCeEEEEEEeehhhh--h-------------------hHHH--HHHHHHHHHHHHh
Q 004790          337 KRLGCGDIGSVYLSELSS------TRCYFAMKVMDKASL--A-------------------SRKK--LTRAQTEREILQL  387 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~------t~~~vAvKvi~k~~~--~-------------------~~~~--~~~~~~E~~IL~~  387 (730)
                      ..||.|.-+.||.|....      .+..+|||+.+....  .                   +...  ...+.+|...|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999997653      346899998852110  0                   0011  1224489999998


Q ss_pred             cC--CCCCccccccccccceeeEEeeecCCCCccc-cccccCCCCccHHHHHHhHHHHHHHHHHh-HhcceeecccCCcc
Q 004790          388 LD--HPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYL-HMLGVVYRDLKPEN  463 (730)
Q Consensus       388 L~--HPnIV~L~~~f~~~~~l~LVmEy~~GGsL~~-ll~~~~~~~lse~~a~~~~~qIl~AL~yL-H~~gIVHRDLKPeN  463 (730)
                      +.  .-++++++++    ..-+|||||+.++.+.. .+..   ..+++..+..+..|++.+|..| |..||||+||++.|
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd---~~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDLs~~N  155 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKD---AKLNDEEMKNAYYQVLSMMKQLYKECNLVHADLSEYN  155 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhc---cccCHHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHH
Confidence            84  3577777765    34679999996655532 2222   2455566777889999999999 89999999999999


Q ss_pred             EEecCCCceEEeccccccc
Q 004790          464 VLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       464 ILl~~~g~vKL~DFGlA~~  482 (730)
                      ||++ ++.+.|+|||.+..
T Consensus       156 IL~~-~~~v~iIDF~qav~  173 (197)
T cd05146         156 MLWH-DGKVWFIDVSQSVE  173 (197)
T ss_pred             EEEE-CCcEEEEECCCcee
Confidence            9997 57899999998843

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.29  E-value=2.6e-11  Score=138.34  Aligned_cols=122  Identities=18%  Similarity=0.196  Sum_probs=100.7

Q ss_pred             EEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCccccccccCCC
Q 004790          349 LSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGK  428 (730)
Q Consensus       349 la~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~  428 (730)
                      -|..+.++.+|.+.+.+...-   .....+.+-++-|+.|+||||+++++.++.++.+|||+|-+.  -|..++.+    
T Consensus        30 ~~t~k~~~~~vsVF~~~~~~~---~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~----  100 (690)
T KOG1243|consen   30 DGTRKADGGPVSVFVYKRSNG---EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKE----  100 (690)
T ss_pred             ccceeccCCceEEEEEeCCCc---hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHH----
Confidence            466677788888888865432   344556677888999999999999999999999999999883  34445544    


Q ss_pred             CccHHHHHHhHHHHHHHHHHhH-hcceeecccCCccEEecCCCceEEeccccc
Q 004790          429 HFSEYAARFYAAEVLLALEYLH-MLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       429 ~lse~~a~~~~~qIl~AL~yLH-~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                       +.......-++||+.||.||| +.+++|++|.-.-|+|+..|+.||.+|.++
T Consensus       101 -l~~~~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~GeWkLggle~v  152 (690)
T KOG1243|consen  101 -LGKEEVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFVNESGEWKLGGLELV  152 (690)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEEcCCCcEEEeeeEEE
Confidence             336667778899999999997 678999999999999999999999999987

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.21  E-value=7.9e-11  Score=118.55  Aligned_cols=139  Identities=22%  Similarity=0.230  Sum_probs=106.4

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC--CCCcccccccccc---ceeeEEee
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH--PFLPTLYTHFETD---RFSCLVME  411 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H--PnIV~L~~~f~~~---~~l~LVmE  411 (730)
                      +.||.|.++.||+++... |+.|++|+.......  .....+.+|.++++.+.+  .++++++.+....   +..|+|||
T Consensus         4 ~~l~~G~~n~~~~v~~~~-g~~~ilK~~~~~~~~--~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e   80 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGG-GRRLVLRRPPPGALL--PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVME   80 (223)
T ss_pred             eecCCCccceEEEEEecC-CcceEEEeCCCcccC--cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEE
Confidence            678999999999998754 567999998654321  123457889999999965  4567787777654   36789999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh----------------------------------------
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM----------------------------------------  451 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~----------------------------------------  451 (730)
                      |++|.+|...+..   ..+++.+...++.+++.+|.+||+                                        
T Consensus        81 ~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (223)
T cd05154          81 RVDGRVLRDRLLR---PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAM  157 (223)
T ss_pred             EeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHH
Confidence            9999988775432   246666777777888888888873                                        


Q ss_pred             ----------------cceeecccCCccEEecC--CCceEEecccccc
Q 004790          452 ----------------LGVVYRDLKPENVLVRD--DGHIMLSDFDLSL  481 (730)
Q Consensus       452 ----------------~gIVHRDLKPeNILl~~--~g~vKL~DFGlA~  481 (730)
                                      ..++|+|+.|.|||++.  ++.+.|+||+.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~  205 (223)
T cd05154         158 ERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT  205 (223)
T ss_pred             HHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence                            23699999999999998  6778999999874

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.19  E-value=1.3e-11  Score=130.32  Aligned_cols=211  Identities=21%  Similarity=0.263  Sum_probs=145.2

Q ss_pred             HHHHhcCCCCCccccccccccc-----eeeEEeeecCCCCccccccccC--CCCccHHHHHHhHHHHHHHHHHhHhcc--
Q 004790          383 EILQLLDHPFLPTLYTHFETDR-----FSCLVMEYCPGGDLHTLRQRQP--GKHFSEYAARFYAAEVLLALEYLHMLG--  453 (730)
Q Consensus       383 ~IL~~L~HPnIV~L~~~f~~~~-----~l~LVmEy~~GGsL~~ll~~~~--~~~lse~~a~~~~~qIl~AL~yLH~~g--  453 (730)
                      .-|-++.|-|||+++.++.+.+     ...++.|||..|+|..+|++..  ...+.+..-+.|+-||+.||.|||+..  
T Consensus       119 dnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~Pp  198 (458)
T KOG1266|consen  119 DNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPP  198 (458)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCc
Confidence            3455678999999999996543     4789999999999999888642  356778888899999999999999876  


Q ss_pred             eeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccc
Q 004790          454 VVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFP  533 (730)
Q Consensus       454 IVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~  533 (730)
                      |+|++|..+-|++..+|-||+.--...      .+                           .+            .+- 
T Consensus       199 iihgnlTc~tifiq~ngLIkig~~ap~------s~---------------------------h~------------s~~-  232 (458)
T KOG1266|consen  199 IIHGNLTCDTIFIQHNGLIKIGSVAPD------ST---------------------------HP------------SVN-  232 (458)
T ss_pred             cccCCcchhheeecCCceEEecccCcc------cc---------------------------ch------------hhh-
Confidence            999999999999998888777531110      00                           00            000 


Q ss_pred             cccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCC
Q 004790          534 QKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG  613 (730)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~  613 (730)
                           .++                     .+....-.|-++|.|||.=.....+.++|||+||....||..+..--....
T Consensus       233 -----~~~---------------------~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEiq~tnse  286 (458)
T KOG1266|consen  233 -----STR---------------------EAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEIQSTNSE  286 (458)
T ss_pred             -----hhh---------------------HhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHheeccCCCc
Confidence                 000                     000001135678899987666667789999999999999998875422111


Q ss_pred             Cc-cceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          614 NR-ATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       614 ~~-~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      .. ..-.++.+-.  +-..   ..--+++|++||.-.|+.||+    +.+++.||-.-++.-
T Consensus       287 S~~~~ee~ia~~i--~~le---n~lqr~~i~kcl~~eP~~rp~----ar~llfHpllfeVhs  339 (458)
T KOG1266|consen  287 SKVEVEENIANVI--IGLE---NGLQRGSITKCLEGEPNGRPD----ARLLLFHPLLFEVHS  339 (458)
T ss_pred             ceeehhhhhhhhe--eecc---CccccCcCcccccCCCCCCcc----hhhhhcCceeeecch
Confidence            11 1111111111  1110   112257999999999999999    799999998776543

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.10  E-value=2.9e-10  Score=112.80  Aligned_cols=133  Identities=22%  Similarity=0.237  Sum_probs=97.1

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEe-----ehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVM-----DKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi-----~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      ..+++|+-+.+|++.+.+-.  +++|.=     +...+..+-...+..+|..+|..+.--.|..-+=++.+.....|+||
T Consensus         2 ~~i~~GAEa~i~~~~~~g~~--av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me   79 (204)
T COG3642           2 DLIKQGAEAIIYLTDFLGLP--AVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVME   79 (204)
T ss_pred             chhhCCcceeEEeeeccCcc--eEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEE
Confidence            35789999999999775433  566632     22333334445677899999998865544444444555556679999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      |++|..|.+++...         .-.++..|-.-+.-||..||||+||.+.||++..++ +.++||||+.
T Consensus        80 ~I~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~-i~~IDfGLg~  139 (204)
T COG3642          80 YIEGELLKDALEEA---------RPDLLREVGRLVGKLHKAGIVHGDLTTSNIILSGGR-IYFIDFGLGE  139 (204)
T ss_pred             EeCChhHHHHHHhc---------chHHHHHHHHHHHHHHhcCeecCCCccceEEEeCCc-EEEEECCccc
Confidence            99988888777653         133566777778889999999999999999997654 9999999984

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.09  E-value=4.7e-10  Score=111.00  Aligned_cols=144  Identities=20%  Similarity=0.199  Sum_probs=105.7

Q ss_pred             EEeEEccCCcEEEEEEEECCCCeEEEEE-----EeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          335 LLKRLGCGDIGSVYLSELSSTRCYFAMK-----VMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~t~~~vAvK-----vi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .+..|-+|+-+.|+++.+.+.  .+.||     ..+...+..+-...+..+|+++|.++.--.|.--.-+|-+...-+|+
T Consensus        11 ~l~likQGAEArv~~~~~~Ge--~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~   88 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSGE--AAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIY   88 (229)
T ss_pred             cceeeeccceeeEeeeccCCc--eeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEE
Confidence            567788999999999988654  45555     33444444445566788999999988544444444446666667799


Q ss_pred             eeecCC-CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC---ceEEeccccc
Q 004790          410 MEYCPG-GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG---HIMLSDFDLS  480 (730)
Q Consensus       410 mEy~~G-GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g---~vKL~DFGlA  480 (730)
                      |||++| -++.+++...-...........++.+|-..|.-||.++|||+||..+|||+..+|   .+.|+||||+
T Consensus        89 ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls  163 (229)
T KOG3087|consen   89 MEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLS  163 (229)
T ss_pred             EEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecch
Confidence            999977 3666666654333333444467888999999999999999999999999997654   3589999998

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.01  E-value=2.4e-09  Score=107.81  Aligned_cols=127  Identities=25%  Similarity=0.258  Sum_probs=84.5

Q ss_pred             EEEEEEECCCCeEEEEEEeehhh-----------------------hhhHHHHHHHHHHHHHHHhcCCC--CCccccccc
Q 004790          346 SVYLSELSSTRCYFAMKVMDKAS-----------------------LASRKKLTRAQTEREILQLLDHP--FLPTLYTHF  400 (730)
Q Consensus       346 ~Vyla~~~~t~~~vAvKvi~k~~-----------------------~~~~~~~~~~~~E~~IL~~L~HP--nIV~L~~~f  400 (730)
                      .||.|... .+..+|||+.+...                       .........+++|.++|..+..-  ++++++++.
T Consensus         1 ~Vy~~~~~-~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~   79 (188)
T PF01163_consen    1 DVYHAIDP-DGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN   79 (188)
T ss_dssp             EEEEEEEC-TTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE
T ss_pred             CEEEEECC-CCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe
Confidence            38888874 45689999885211                       01112235678999999999655  677887553


Q ss_pred             cccceeeEEeeecC--CCCccccccccCCCCccHHHHHHhHHHHHHHHHH-hHhcceeecccCCccEEecCCCceEEecc
Q 004790          401 ETDRFSCLVMEYCP--GGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY-LHMLGVVYRDLKPENVLVRDDGHIMLSDF  477 (730)
Q Consensus       401 ~~~~~l~LVmEy~~--GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~y-LH~~gIVHRDLKPeNILl~~~g~vKL~DF  477 (730)
                          .-+|||||++  |..|..+...    .++......++.+++..+.. +|..||||+||.+.|||++.+ .+.|+||
T Consensus        80 ----~~~ivME~I~~~G~~~~~l~~~----~~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~NIlv~~~-~~~iIDf  150 (188)
T PF01163_consen   80 ----RNVIVMEYIGEDGVPLPRLKDV----DLSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEYNILVDDG-KVYIIDF  150 (188)
T ss_dssp             ----TTEEEEE--EETTEEGGCHHHC----GGGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STTSEEEETT-CEEE--G
T ss_pred             ----CCEEEEEecCCCccchhhHHhc----cccchhHHHHHHHHHHHHHHHHHhcCceecCCChhhEEeecc-eEEEEec
Confidence                3469999998  6566554332    23345566778888886666 579999999999999999876 9999999


Q ss_pred             ccccc
Q 004790          478 DLSLR  482 (730)
Q Consensus       478 GlA~~  482 (730)
                      |.+..
T Consensus       151 ~qav~  155 (188)
T PF01163_consen  151 GQAVD  155 (188)
T ss_dssp             TTEEE
T ss_pred             Cccee
Confidence            98853

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.96  E-value=5e-09  Score=111.17  Aligned_cols=135  Identities=16%  Similarity=0.066  Sum_probs=94.6

Q ss_pred             EEEEEEEECCCCeEEEEEEeehhhhhh-HH-------HHHHHHHHHHHHHhcCCCCCc--cccccccc-----cceeeEE
Q 004790          345 GSVYLSELSSTRCYFAMKVMDKASLAS-RK-------KLTRAQTEREILQLLDHPFLP--TLYTHFET-----DRFSCLV  409 (730)
Q Consensus       345 G~Vyla~~~~t~~~vAvKvi~k~~~~~-~~-------~~~~~~~E~~IL~~L~HPnIV--~L~~~f~~-----~~~l~LV  409 (730)
                      ..|++.+.  .|+.|.||......... -+       -...+.+|...+..|..-+|.  .+..+++.     ....+||
T Consensus        36 rrvvr~~~--~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LV  113 (268)
T PRK15123         36 RRTLRFEL--AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFII  113 (268)
T ss_pred             ceEEEEEE--CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEE
Confidence            34666655  35578899764332110 00       011477899998888444443  34445542     2357899


Q ss_pred             eeecCCC-CccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-------CCceEEecccccc
Q 004790          410 MEYCPGG-DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-------DGHIMLSDFDLSL  481 (730)
Q Consensus       410 mEy~~GG-sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-------~g~vKL~DFGlA~  481 (730)
                      ||++++. +|.+++........++.....++.+|+..+.-||.+||+|+||++.|||++.       ++.+.|+||+.+.
T Consensus       114 te~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~  193 (268)
T PRK15123        114 TEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQ  193 (268)
T ss_pred             EeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCccc
Confidence            9999876 7888765322234566777889999999999999999999999999999975       4689999999874

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.93  E-value=1.1e-09  Score=125.63  Aligned_cols=167  Identities=22%  Similarity=0.321  Sum_probs=118.9

Q ss_pred             HHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCc
Q 004790          441 EVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSS  519 (730)
Q Consensus       441 qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~  519 (730)
                      +++.||.|+|. .++||++|.|++|.++..|..||+.|+++.....                                  
T Consensus       107 ~v~dgl~flh~sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~----------------------------------  152 (700)
T KOG2137|consen  107 NVADGLAFLHRSAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANG----------------------------------  152 (700)
T ss_pred             cccchhhhhccCcceeecccchhheeeccCcceeeccchhhhccCC----------------------------------
Confidence            45589999995 6899999999999999999999999998732110                                  


Q ss_pred             cccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHH
Q 004790          520 VCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFL  599 (730)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iL  599 (730)
                          ++|+-...+             +.+.+.                ...-...|.|||++.+...+.++|++||||++
T Consensus       153 ----~~~~p~~~y-------------d~~lp~----------------~~~~~~~f~apE~~~~~~~~~~sd~fSlG~li  199 (700)
T KOG2137|consen  153 ----PTEYPFSEY-------------DPPLPL----------------LLQPHLNFLAPEYLLGTTNTPASDVFSLGVLI  199 (700)
T ss_pred             ----CCccccccC-------------CCCCCh----------------hhccCcccccchhhccccccccccceeeeeEE
Confidence                011000000             001111                11335679999999998889999999999999


Q ss_pred             HHHh-hCCCCCCCCCCccceee--eecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          600 HELL-YGKTPFKGSGNRATLFN--VVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       600 yELl-tG~~PF~g~~~~~~l~~--i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                      |.+. .|+..|.+.+....+..  ...+--.+-.+..++.++++=|.++|..+...||+    +.+++.-|||.+.--..
T Consensus       200 ~~i~~~gk~i~~a~~~~~~~~~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~~~~rp~----~~~l~~~~ff~D~~~~a  275 (700)
T KOG2137|consen  200 YTIYNGGKSIIAANGGLLSYSFSRNLLNAGAFGYSNNLPSELRESLKKLLNGDSAVRPT----LDLLLSIPFFSDPGLKA  275 (700)
T ss_pred             EEEecCCcchhhccCCcchhhhhhcccccccccccccCcHHHHHHHHHHhcCCcccCcc----hhhhhcccccCCchhhh
Confidence            9999 77877776543322211  11122223344678899999999999999999998    68999999999855444


Q ss_pred             hc
Q 004790          677 IR  678 (730)
Q Consensus       677 ~r  678 (730)
                      +|
T Consensus       276 Lr  277 (700)
T KOG2137|consen  276 LR  277 (700)
T ss_pred             hh
Confidence            43

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.83  E-value=2.3e-08  Score=111.64  Aligned_cols=135  Identities=20%  Similarity=0.176  Sum_probs=107.5

Q ss_pred             CcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc----cceeeEEeeecCC-CC
Q 004790          343 DIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET----DRFSCLVMEYCPG-GD  417 (730)
Q Consensus       343 ~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~----~~~l~LVmEy~~G-Gs  417 (730)
                      --.+.|++....+|..|++|.++........+   ...-+++++++.|+|||.+.++|.+    +..++||++|.++ ++
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk---~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~T  364 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQSTNK---DTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPT  364 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccccccCccc---chHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCch
Confidence            34678999999999999999995443332222   2345788999999999999999984    5578999999986 46


Q ss_pred             ccccccc-c------------CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          418 LHTLRQR-Q------------PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       418 L~~ll~~-~------------~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      |.++.-. .            .+...+|...|.|+.|+..||.++|+.|+.-+-|.|.+||++.+.+|+|+..|+.
T Consensus       365 L~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck~L~~~kIlv~G~~RIriS~C~i~  440 (655)
T KOG3741|consen  365 LYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACKTLDLKKILVTGKMRIRISGCGIM  440 (655)
T ss_pred             HHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceeecccHhHeEeeCcceEEEecccce
Confidence            6543211 1            1345788999999999999999999999999999999999998888999877765

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.71  E-value=5.2e-08  Score=99.21  Aligned_cols=106  Identities=29%  Similarity=0.285  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHhcCCCC--Ccccccccccc----ceeeEEeeecCCC-CccccccccCCCCccHHHHHHhHHHHHHHHH
Q 004790          375 LTRAQTEREILQLLDHPF--LPTLYTHFETD----RFSCLVMEYCPGG-DLHTLRQRQPGKHFSEYAARFYAAEVLLALE  447 (730)
Q Consensus       375 ~~~~~~E~~IL~~L~HPn--IV~L~~~f~~~----~~l~LVmEy~~GG-sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~  447 (730)
                      ..++.+|...+..|..-.  ++..+.+.+..    ...|||||+++|. +|.+++....  .++......++.+++..+.
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~--~~~~~~~~~ll~~l~~~i~  132 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWE--QLDPSQRRELLRALARLIA  132 (206)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhc--ccchhhHHHHHHHHHHHHH
Confidence            346788998888874333  44555555432    3458999999884 7888877632  2666777889999999999


Q ss_pred             HhHhcceeecccCCccEEecCCC---ceEEeccccccc
Q 004790          448 YLHMLGVVYRDLKPENVLVRDDG---HIMLSDFDLSLR  482 (730)
Q Consensus       448 yLH~~gIVHRDLKPeNILl~~~g---~vKL~DFGlA~~  482 (730)
                      -||.+||+|+||++.|||++.++   .+.|+||+-++.
T Consensus       133 ~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  133 KLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             HHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhcee
Confidence            99999999999999999999887   899999998753

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.68  E-value=1e-07  Score=99.88  Aligned_cols=136  Identities=24%  Similarity=0.234  Sum_probs=99.5

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhh--h----------h-------HHHHHHHHHHHHHHHhcCCC--
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--A----------S-------RKKLTRAQTEREILQLLDHP--  391 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~--~----------~-------~~~~~~~~~E~~IL~~L~HP--  391 (730)
                      +.+...||-|.-+.||.|... .|..+|||.-+....  .          .       .-....+++|.++|+.|.-.  
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~-~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~  171 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDP-KGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGV  171 (304)
T ss_pred             HhhccccccCccceEEEEECC-CCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCC
Confidence            567789999999999999987 466899997541110  0          0       11234578899999998544  


Q ss_pred             CCccccccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc
Q 004790          392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH  471 (730)
Q Consensus       392 nIV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~  471 (730)
                      .++.-+++-    ..++||||++|-.|..+.-       ....+..++..|+.-+.-+-..||||+|+.+=|||++.+|.
T Consensus       172 ~VP~P~~~n----RHaVvMe~ieG~eL~~~r~-------~~en~~~il~~il~~~~~~~~~GiVHGDlSefNIlV~~dg~  240 (304)
T COG0478         172 KVPKPIAWN----RHAVVMEYIEGVELYRLRL-------DVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTEDGD  240 (304)
T ss_pred             CCCCccccc----cceeeeehcccceeecccC-------cccCHHHHHHHHHHHHHHHHHcCccccCCchheEEEecCCC
Confidence            677766543    3579999999988876431       23334445566666666666899999999999999999999


Q ss_pred             eEEeccccc
Q 004790          472 IMLSDFDLS  480 (730)
Q Consensus       472 vKL~DFGlA  480 (730)
                      +.++||--+
T Consensus       241 ~~vIDwPQ~  249 (304)
T COG0478         241 IVVIDWPQA  249 (304)
T ss_pred             EEEEeCccc
Confidence            999999644

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.55  E-value=4.2e-08  Score=111.85  Aligned_cols=242  Identities=17%  Similarity=0.152  Sum_probs=168.3

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCC-CccccccccccceeeEEee
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF-LPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPn-IV~L~~~f~~~~~l~LVmE  411 (730)
                      |...+.+++|+++++|+.+...+...+ .|++...        ....-++++|.+++||| .+..++-++.+...+++|+
T Consensus       244 s~~fh~fvK~altknpKkRptaeklL~-h~fvs~~--------l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~  314 (829)
T KOG0576|consen  244 SEFFHNFVKGALTKNPKKRPTAEKLLQ-HPFVSQT--------LSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMR  314 (829)
T ss_pred             hHHHHHHHHHHhcCCCccCCChhhhee-ceeeccc--------hhhHHHHHHHHHccCCCCcccccccCCcccccchhhh
Confidence            444566789999999999887776544 7776543        22445889999999999 7777777888899999999


Q ss_pred             ecCCC-CccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          412 YCPGG-DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       412 y~~GG-sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ++.++ +-...+.. ....|.+.+...+.+.-+.+|+|||+.-=+|||    |||... +..|+.||+....+..     
T Consensus       315 i~s~~rs~~~~~~~-se~~~~~~~~~~~~r~et~~l~~l~~~~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~-----  383 (829)
T KOG0576|consen  315 ICSTGRSSALEMTV-SEIALEQYQFAYPLRKETRPLAELHSSYKVHRD----NILGSE-EEVKLLDFAVPPQLTR-----  383 (829)
T ss_pred             hhcCCccccccCCh-hhHhhhhhhhhhhhhhhcccccccccccccCcc----cccccc-cccccccccCCcccCc-----
Confidence            99887 22222111 112344555556677778899999998779999    887764 6789999987632100     


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              .....++.
T Consensus       384 ------------------------------------------------------------------------~~~~~t~~  391 (829)
T KOG0576|consen  384 ------------------------------------------------------------------------TMKPRTAI  391 (829)
T ss_pred             ------------------------------------------------------------------------ccccccCC
Confidence                                                                                    00123568


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCC--CCCChhH-HHHHHhhhc
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS--PATSYAS-RDLIRGLLV  647 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~--~~~s~~~-~dLI~~lL~  647 (730)
                      +|+.++|||++....+....|.|++|.--.+|.-|-+|-..  ....+..+-.+.-.+...  ...+... +++...|+.
T Consensus       392 ~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~~--P~~~~~~~g~~p~s~~L~~~~aw~~~~~~~~~~~~~~  469 (829)
T KOG0576|consen  392 GTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRSS--PPAVLPMIGNGPNSPMLTDKSAWSPVFHRDFPAPCLN  469 (829)
T ss_pred             CCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCCC--CccccCCCCCCCCccccchhhhcCcccccCCcccccC
Confidence            99999999999999999999999999987788888777654  223333322221011000  0111111 257788999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ..|..|..    ...++-|.+|++.
T Consensus       470 g~P~~pkv----~mgacfsKvfngC  490 (829)
T KOG0576|consen  470 GLPPTPKV----HMGACFSKVFNGC  490 (829)
T ss_pred             CCCCCCcc----hhhHHHHHHhccC
Confidence            99999988    6788999999985

>PRK09902 hypothetical protein; Provisional

Probab=98.53  E-value=4.3e-07  Score=92.83  Aligned_cols=139  Identities=16%  Similarity=0.132  Sum_probs=99.2

Q ss_pred             ccCCcEEEEEEEECCCCeEEEEEEeehh---hhhhHHHHHHHHHHHHHHHhcCCCC--Cccccccccc-----cceeeEE
Q 004790          340 GCGDIGSVYLSELSSTRCYFAMKVMDKA---SLASRKKLTRAQTEREILQLLDHPF--LPTLYTHFET-----DRFSCLV  409 (730)
Q Consensus       340 G~G~fG~Vyla~~~~t~~~vAvKvi~k~---~~~~~~~~~~~~~E~~IL~~L~HPn--IV~L~~~f~~-----~~~l~LV  409 (730)
                      |.||.+-|+.....+.  .|=+|.-...   .+....-...+.+|...|+.|..-+  +++.. ++..     ....+||
T Consensus        27 ~rgG~SgV~r~~~~g~--~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~~rA~LV  103 (216)
T PRK09902         27 RRNGMSGVQCVERNGK--KLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGEWRALLV  103 (216)
T ss_pred             CCCCcceEEEEEeCCc--EEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCceEEEEE
Confidence            5688889998876544  4777765311   1110112345788999998884333  45555 3321     2346899


Q ss_pred             eeecCC-CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc--eEEecccccc
Q 004790          410 MEYCPG-GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH--IMLSDFDLSL  481 (730)
Q Consensus       410 mEy~~G-GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~--vKL~DFGlA~  481 (730)
                      +|-+.| -+|.+++....-...++.....++.+|+.+|.-||..|+.|+|+-+.|||++.+|.  ++|+||.-++
T Consensus       104 Te~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r  178 (216)
T PRK09902        104 TEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSR  178 (216)
T ss_pred             EEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhccc
Confidence            998844 57777766543345677777889999999999999999999999999999987777  9999998664

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.49  E-value=3.9e-07  Score=104.66  Aligned_cols=136  Identities=25%  Similarity=0.321  Sum_probs=86.8

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhh-------------------------------HHHHHH------HH
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS-------------------------------RKKLTR------AQ  379 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~-------------------------------~~~~~~------~~  379 (730)
                      .-|+.++.|+||+|+.+. |+.||||+.+..-...                               .+..+.      +.
T Consensus       131 ~PiAsASIaQVH~A~L~s-G~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~  209 (517)
T COG0661         131 EPIASASIAQVHRAVLKS-GEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYR  209 (517)
T ss_pred             CchhhhhHhhheeEEecC-CCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHH
Confidence            568999999999999986 8899999985221100                               011111      23


Q ss_pred             HHHHHHHhc-----CCCCC--ccccccccccceeeEEeeecCCCCccccccccCCCCcc-----HHHHHHhHHHHHHHHH
Q 004790          380 TEREILQLL-----DHPFL--PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFS-----EYAARFYAAEVLLALE  447 (730)
Q Consensus       380 ~E~~IL~~L-----~HPnI--V~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~ls-----e~~a~~~~~qIl~AL~  447 (730)
                      +|..-+.++     +.|+|  +++|  ++-.+.-.|+|||++|--+.++..... ..++     +.-++.++.|+     
T Consensus       210 ~EA~n~~~~~~nf~~~~~v~VP~V~--we~t~~~VLtmE~i~Gi~i~d~~~l~~-~g~d~k~ia~~~~~~f~~q~-----  281 (517)
T COG0661         210 REAANAERFRENFKDDPDVYVPKVY--WEYTTRRVLTMEWIDGIKISDIAALKS-AGIDRKELAELLVRAFLRQL-----  281 (517)
T ss_pred             HHHHHHHHHHHHcCCCCCeEeceee--hhccCCcEEEEEeeCCEecccHHHHHh-cCCCHHHHHHHHHHHHHHHH-----
Confidence            344444333     23332  2333  222233469999999998887632211 2233     33333333333     


Q ss_pred             HhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       448 yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                        =..|++|.|..|.||+++.+|++.+.|||+..++
T Consensus       282 --~~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l  315 (517)
T COG0661         282 --LRDGFFHADPHPGNILVRSDGRIVLLDFGIVGRL  315 (517)
T ss_pred             --HhcCccccCCCccceEEecCCcEEEEcCcceecC
Confidence              3489999999999999999999999999998654

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.48  E-value=1.4e-06  Score=95.54  Aligned_cols=236  Identities=22%  Similarity=0.246  Sum_probs=150.9

Q ss_pred             EEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcc--------ccccccccce
Q 004790          335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPT--------LYTHFETDRF  405 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~--------L~~~f~~~~~  405 (730)
                      ..+.||+|+-+.+|-.-.-.+   -+-|++.+.......      ..+..|... +||-+-.        ||+--. ...
T Consensus        15 ~gr~LgqGgea~ly~l~e~~d---~VAKIYh~Pppa~~a------qk~a~la~~p~~p~~~~rvaWPqa~L~G~~~-~~~   84 (637)
T COG4248          15 PGRPLGQGGEADLYTLGEVRD---QVAKIYHAPPPAAQA------QKVAELAATPDAPLLNYRVAWPQATLHGGRR-GKV   84 (637)
T ss_pred             CCccccCCccceeeecchhhc---hhheeecCCCchHHH------HHHHHhccCCCCcchhhhhcccHHHhhCCCc-cce
Confidence            456799999999997654433   245888765433221      123334333 6775433        222222 222


Q ss_pred             eeEEeeecCCCCc-cccc----cccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          406 SCLVMEYCPGGDL-HTLR----QRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       406 l~LVmEy~~GGsL-~~ll----~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      +-++|..+.|..- +.++    .++....+.+.-+...++.|+.+.+.||..|.+-+|+.++|+|+.+++.|.|.|=+.-
T Consensus        85 iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~~~V~LVdsDsf  164 (637)
T COG4248          85 IGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLVDSDSF  164 (637)
T ss_pred             eEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcCCcccccCccceeeecCceEEEEcccce
Confidence            7788888877521 1111    1233345677888889999999999999999999999999999999999999985422


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ..+.                    +|                                                      
T Consensus       165 qi~~--------------------ng------------------------------------------------------  170 (637)
T COG4248         165 QINA--------------------NG------------------------------------------------------  170 (637)
T ss_pred             eecc--------------------CC------------------------------------------------------
Confidence            1100                    00                                                      


Q ss_pred             cccccccccccCcccCChhhhc-----cCCCCCcceeechhHHHHHHhhC-CCCCCCCCCc----ccee-eeec------
Q 004790          561 PTAARSMSFVGTHEYLAPEIIK-----GEGHGSAVDWWTFGIFLHELLYG-KTPFKGSGNR----ATLF-NVVG------  623 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~-----g~~~~~~sDIWSLG~iLyELltG-~~PF~g~~~~----~~l~-~i~~------  623 (730)
                         ....-.+|.++|.+||.-.     +..-+...|.|.||++||+||.| +.||.|....    .-+. .|..      
T Consensus       171 ---~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya  247 (637)
T COG4248         171 ---TLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYA  247 (637)
T ss_pred             ---ceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeec
Confidence               0011248999999999865     34456789999999999999986 9999874211    0011 1111      


Q ss_pred             --cc-ccCC-----CCCCCChhHHHHHHhhhcC--CCCCcCCch
Q 004790          624 --QQ-LRFP-----DSPATSYASRDLIRGLLVK--EPQHRLGVK  657 (730)
Q Consensus       624 --~~-~~~p-----~~~~~s~~~~dLI~~lL~~--DP~~R~t~~  657 (730)
                        ++ ...|     .+..++.+++.|..+|+..  ++.-||+.+
T Consensus       248 ~~~~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~  291 (637)
T COG4248         248 SDQRRGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAK  291 (637)
T ss_pred             hhccCCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHH
Confidence              11 1111     1235677888999999874  366899964

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.45  E-value=2.2e-06  Score=88.18  Aligned_cols=140  Identities=19%  Similarity=0.233  Sum_probs=93.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHH------HHHHHHHHHhcCCC---CCccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTR------AQTEREILQLLDHP---FLPTLYT  398 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~------~~~E~~IL~~L~HP---nIV~L~~  398 (730)
                      +...+|.+++.+-......|.+-...  ++.+++|..+.........+..      ..+++..+..+...   .+..++.
T Consensus        28 i~~~~~~~~kv~k~~~r~~ValIei~--~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl  105 (229)
T PF06176_consen   28 ILDNNYKIIKVFKNTKRNYVALIEID--GKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYL  105 (229)
T ss_pred             HHhCCceEEEeecCCCccEEEEEEEC--CcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCcccccccee
Confidence            44578999999999888888877664  4579999886433222222221      23444444444222   2222222


Q ss_pred             c-----ccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceE
Q 004790          399 H-----FETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIM  473 (730)
Q Consensus       399 ~-----f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vK  473 (730)
                      +     +.-....+|||||++|..|.++..      +++.    +...|..++.-||..|++|+|..|.|+++..+ .++
T Consensus       106 ~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~------i~e~----~~~ki~~~ikqlH~~G~~HGD~hpgNFlv~~~-~i~  174 (229)
T PF06176_consen  106 AAEKKIFRYTSSYVLLMEYIEGVELNDIED------IDED----LAEKIVEAIKQLHKHGFYHGDPHPGNFLVSNN-GIR  174 (229)
T ss_pred             eeeeeeccceeEEEEEEEEecCeecccchh------cCHH----HHHHHHHHHHHHHHcCCccCCCCcCcEEEECC-cEE
Confidence            2     222344569999999999877532      3332    44567788999999999999999999999855 599


Q ss_pred             Eeccccc
Q 004790          474 LSDFDLS  480 (730)
Q Consensus       474 L~DFGlA  480 (730)
                      ++||+..
T Consensus       175 iID~~~k  181 (229)
T PF06176_consen  175 IIDTQGK  181 (229)
T ss_pred             EEECccc
Confidence            9999865

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.37  E-value=7e-06  Score=85.50  Aligned_cols=137  Identities=23%  Similarity=0.258  Sum_probs=93.2

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHH-------------------H--HHHHHHHHHHHHhc--CCCCC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRK-------------------K--LTRAQTEREILQLL--DHPFL  393 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~-------------------~--~~~~~~E~~IL~~L--~HPnI  393 (730)
                      ..|..|.-+.||+|.. .++..+|+|+++.....-+.                   +  ..-...|..-|+++  .+-.+
T Consensus        54 g~istGKEA~Vy~a~~-~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVrv  132 (268)
T COG1718          54 GCISTGKEANVYLAET-GDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVRV  132 (268)
T ss_pred             eeecCCcceEEEeecc-CCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3667788889999976 45678999998644322111                   1  12234566666666  34455


Q ss_pred             ccccccccccceeeEEeeecCCCCccc-cccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCc
Q 004790          394 PTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGH  471 (730)
Q Consensus       394 V~L~~~f~~~~~l~LVmEy~~GGsL~~-ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~  471 (730)
                      ++-+.++.    -.|||||+....+.. .|..   -.+....+..+..+++..+.-|-. .|+||+||..=|||+. ++.
T Consensus       133 P~Pi~~~~----nVLvMEfIg~~g~pAP~LkD---v~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~-~~~  204 (268)
T COG1718         133 PEPIAFRN----NVLVMEFIGDDGLPAPRLKD---VPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH-DGE  204 (268)
T ss_pred             CCceeecC----CeEEEEeccCCCCCCCCccc---CCcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE-CCe
Confidence            55555544    359999994431211 2221   233344677888999999988866 9999999999999999 889


Q ss_pred             eEEeccccccc
Q 004790          472 IMLSDFDLSLR  482 (730)
Q Consensus       472 vKL~DFGlA~~  482 (730)
                      +.++|||-|..
T Consensus       205 p~iID~~QaV~  215 (268)
T COG1718         205 PYIIDVSQAVT  215 (268)
T ss_pred             EEEEECccccc
Confidence            99999998743

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.34  E-value=7.1e-06  Score=82.69  Aligned_cols=139  Identities=24%  Similarity=0.349  Sum_probs=83.3

Q ss_pred             EeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCC--CCcccccccc---ccceeeEEe
Q 004790          336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP--FLPTLYTHFE---TDRFSCLVM  410 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HP--nIV~L~~~f~---~~~~l~LVm  410 (730)
                      ++.|+.|..+.||++.... + .+++|+....     .....+.+|..+++.|...  -+++++....   .....+++|
T Consensus         2 i~~l~~G~~n~~~~v~~~~-~-~~vlK~~~~~-----~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~   74 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD-G-RYVLKFYRPP-----DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLM   74 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT-S-EEEEEEESSH-----HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEE
T ss_pred             CccCCCCCeeeEEEEEECC-c-EEEEEEeCCC-----CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEE
Confidence            5789999999999999876 4 7899997654     2344567888888887433  3567776332   334578999


Q ss_pred             eecCCCCccc----------------ccc---cc--CCCCccHHH---HH---H-------h--------HHHHHH-HHH
Q 004790          411 EYCPGGDLHT----------------LRQ---RQ--PGKHFSEYA---AR---F-------Y--------AAEVLL-ALE  447 (730)
Q Consensus       411 Ey~~GGsL~~----------------ll~---~~--~~~~lse~~---a~---~-------~--------~~qIl~-AL~  447 (730)
                      ++++|..+..                ++.   ..  ....+....   ..   .       +        ...+.. .+.
T Consensus        75 ~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (239)
T PF01636_consen   75 EYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQ  154 (239)
T ss_dssp             EEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             EEeccccccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHHH
Confidence            9999987766                110   00  001110000   00   0       0        112222 233


Q ss_pred             HhH-------hcceeecccCCccEEec-CCCceEEecccccc
Q 004790          448 YLH-------MLGVVYRDLKPENVLVR-DDGHIMLSDFDLSL  481 (730)
Q Consensus       448 yLH-------~~gIVHRDLKPeNILl~-~~g~vKL~DFGlA~  481 (730)
                      .++       ...++|+|+.|.|||++ .++.+.|+||+.+.
T Consensus       155 ~~~~~~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~  196 (239)
T PF01636_consen  155 ELEALLPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAG  196 (239)
T ss_dssp             HHHHHHHCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred             HHHhhhccCCCcEEEEeccccccceeeeccceeEEEecccce
Confidence            333       25699999999999999 66777899999874

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.21  E-value=7.6e-06  Score=84.79  Aligned_cols=134  Identities=13%  Similarity=0.127  Sum_probs=83.1

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCC--CccccccccccceeeEEeeecC
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF--LPTLYTHFETDRFSCLVMEYCP  414 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPn--IV~L~~~f~~~~~l~LVmEy~~  414 (730)
                      ..||.|..+.||+..    +..+++|......     ....+.+|.++++.+..-.  +++.+.+.+..+..++|||+++
T Consensus         7 ~~i~~G~t~~~y~~~----~~~~VlR~~~~~~-----~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~   77 (226)
T TIGR02172         7 TQTGEGGNGESYTHK----TGKWMLKLYNPGF-----DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIV   77 (226)
T ss_pred             eeecCCCCcceeEec----CCCEEEEeCCCCC-----CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecC
Confidence            568999999999841    3357889876532     1223578999999885433  5677877777778899999998


Q ss_pred             CCC-ccccc---------------------ccc--CCCCccHHHHHHhHH----------HHHHH-HHHhH----hccee
Q 004790          415 GGD-LHTLR---------------------QRQ--PGKHFSEYAARFYAA----------EVLLA-LEYLH----MLGVV  455 (730)
Q Consensus       415 GGs-L~~ll---------------------~~~--~~~~lse~~a~~~~~----------qIl~A-L~yLH----~~gIV  455 (730)
                      |.+ +...+                     +..  +...+..... .+..          .+... ..+|.    ...++
T Consensus        78 G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~  156 (226)
T TIGR02172        78 GKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYKE-KIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCL  156 (226)
T ss_pred             CccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHH-HHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceE
Confidence            864 11111                     100  0111111110 0100          11111 12222    12478


Q ss_pred             ecccCCccEEecCCCceEEecccccc
Q 004790          456 YRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       456 HRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      |+|+.|.||+++.++ +.|+||+.+.
T Consensus       157 HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       157 HGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             ecCCCCCcEEEcCCC-cEEEechhcC
Confidence            999999999999888 9999999873

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.14  E-value=9.7e-06  Score=84.02  Aligned_cols=136  Identities=21%  Similarity=0.157  Sum_probs=84.1

Q ss_pred             EEccCCc-EEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeEEeeecCC
Q 004790          338 RLGCGDI-GSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       338 ~LG~G~f-G~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      .|-.|.. ..||+....+  ..+.+|+.....      ...+.+|+++++.+. +--+++++.+...++..++|||+++|
T Consensus         5 ~~~~g~~~~~v~~~~~~~--~~~~vk~~~~~~------~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G   76 (244)
T cd05150           5 RVTEGQSGATVYRLDGKN--PGLYLKIAPSGP------TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPG   76 (244)
T ss_pred             ecCCCCCcCeEEEEcCCC--CcEEEEecCCCc------ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCC
Confidence            3445555 7899997643  468889875432      224567999988883 44566888877776778999999999


Q ss_pred             CCccccc-------------------cccC--CCCccHH------HHHH-------------------hHHHHHHHHHHh
Q 004790          416 GDLHTLR-------------------QRQP--GKHFSEY------AARF-------------------YAAEVLLALEYL  449 (730)
Q Consensus       416 GsL~~ll-------------------~~~~--~~~lse~------~a~~-------------------~~~qIl~AL~yL  449 (730)
                      ..|....                   +..+  ...+...      ....                   -..+++..|...
T Consensus        77 ~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  156 (244)
T cd05150          77 VPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEAT  156 (244)
T ss_pred             ccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHHhh
Confidence            8775331                   0110  0011100      0000                   011112211111


Q ss_pred             ----HhcceeecccCCccEEecCCCceEEecccccc
Q 004790          450 ----HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       450 ----H~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                          ....++|+|+.|.|||++.++.+.|+||+.+.
T Consensus       157 ~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~  192 (244)
T cd05150         157 RPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLG  192 (244)
T ss_pred             CCCcCceEEECCCCCCccEEEeCCcEEEEEEccccc
Confidence                12448999999999999988778999999873

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PLN02876 acyl-CoA dehydrogenase

Probab=98.13  E-value=2e-05  Score=96.19  Aligned_cols=82  Identities=18%  Similarity=0.332  Sum_probs=58.2

Q ss_pred             EEeEEccCCcEEEEEEEECCCC--eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCC--cccccccccc---cee
Q 004790          335 LLKRLGCGDIGSVYLSELSSTR--CYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFL--PTLYTHFETD---RFS  406 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~t~--~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnI--V~L~~~f~~~---~~l  406 (730)
                      .++.|+.|.++.+|+......+  ..+++|+........  ....+.+|.++|+.|. |.+|  ++++.++.+.   +..
T Consensus        42 ~v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~--~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~  119 (822)
T PLN02876         42 KVSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQ--SAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTA  119 (822)
T ss_pred             eEEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCc--cHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCc
Confidence            4688899999999999876543  357778764432111  1234678999999995 6765  7777777654   467


Q ss_pred             eEEeeecCCCCc
Q 004790          407 CLVMEYCPGGDL  418 (730)
Q Consensus       407 ~LVmEy~~GGsL  418 (730)
                      |+||||++|..+
T Consensus       120 flVME~v~G~~~  131 (822)
T PLN02876        120 FYIMEYLEGRIF  131 (822)
T ss_pred             eEEEEecCCccc
Confidence            899999988654

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.96  E-value=3.1e-05  Score=89.12  Aligned_cols=139  Identities=22%  Similarity=0.243  Sum_probs=87.4

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhh----------------------------HHHHHHHHHHHHH----
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS----------------------------RKKLTRAQTEREI----  384 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~----------------------------~~~~~~~~~E~~I----  384 (730)
                      +-||.-+.|+||+|+.+. |..|||||-+..-...                            ++..+.+..|++.    
T Consensus       167 ~piaaASlaQVhrA~L~~-G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA  245 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKN-GEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEA  245 (538)
T ss_pred             chhhhcchhheEEEEecC-CCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHH
Confidence            579999999999999987 8899999875221100                            1111222222222    


Q ss_pred             ------HHhcCCCC------CccccccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHH-HHhHh
Q 004790          385 ------LQLLDHPF------LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL-EYLHM  451 (730)
Q Consensus       385 ------L~~L~HPn------IV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL-~yLH~  451 (730)
                            .+.+.|-+      |+++|..+.+.  -.|+||||+|.-+.++..-. ...++...+..   .+.++. +-|=.
T Consensus       246 ~Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~--RVLtME~~~G~~i~Dl~~i~-~~gi~~~~i~~---~l~~~~~~qIf~  319 (538)
T KOG1235|consen  246 KNAERFRENFKDFSLLTYVLVPKVYWDLSTK--RVLTMEYVDGIKINDLDAID-KRGISPHDILN---KLVEAYLEQIFK  319 (538)
T ss_pred             HhHHHHHHHHHhcccccceeCCeehhhcCcc--eEEEEEecCCccCCCHHHHH-HcCCCHHHHHH---HHHHHHHHHHHh
Confidence                  22334544      66666555444  46999999998887653221 12344443322   222221 22235


Q ss_pred             cceeecccCCccEEecC----CCceEEeccccccc
Q 004790          452 LGVVYRDLKPENVLVRD----DGHIMLSDFDLSLR  482 (730)
Q Consensus       452 ~gIVHRDLKPeNILl~~----~g~vKL~DFGlA~~  482 (730)
                      .|++|.|=.|.|||++.    ++.+.|-|||+...
T Consensus       320 ~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~  354 (538)
T KOG1235|consen  320 TGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAV  354 (538)
T ss_pred             cCCccCCCCCCcEEEecCCCCCccEEEEccccccc
Confidence            78999999999999984    67899999999854

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.93  E-value=6.7e-05  Score=77.12  Aligned_cols=75  Identities=24%  Similarity=0.389  Sum_probs=50.5

Q ss_pred             EeEEccCCcEEEEEEEECC-CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeEEeeec
Q 004790          336 LKRLGCGDIGSVYLSELSS-TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCLVMEYC  413 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~-t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~LVmEy~  413 (730)
                      ++.|..|-...+|++.... .++.|++|+......    ......+|..+++.+. +...++++..+..    .+||||+
T Consensus         3 i~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~----~~~d~~~E~~~~~~l~~~gl~P~v~~~~~~----~~l~e~i   74 (235)
T cd05157           3 FKRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTE----LIIDRERELRIHKLLSKHGLAPKLYATFQN----GLIYEFI   74 (235)
T ss_pred             EEEcCCcccceEEEEEcCCCCCCeEEEEEccCCcc----ceecHHHHHHHHHHHHhCCCCCeEEEEeCC----cEEEEee
Confidence            5678889999999997653 345788998754311    1122346888888883 4445666654432    3899999


Q ss_pred             CCCCc
Q 004790          414 PGGDL  418 (730)
Q Consensus       414 ~GGsL  418 (730)
                      +|.+|
T Consensus        75 ~G~~l   79 (235)
T cd05157          75 PGRTL   79 (235)
T ss_pred             CCCcC
Confidence            99776

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.93  E-value=5.6e-05  Score=78.17  Aligned_cols=74  Identities=12%  Similarity=0.149  Sum_probs=47.8

Q ss_pred             EeEEccCCcE-EEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCC---CCcccccccccc---ceeeE
Q 004790          336 LKRLGCGDIG-SVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP---FLPTLYTHFETD---RFSCL  408 (730)
Q Consensus       336 l~~LG~G~fG-~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HP---nIV~L~~~f~~~---~~l~L  408 (730)
                      ++.|+.|+.. .||+..     ..+++|+.+...     ....+.+|.++|+.|...   -+++.++.....   ...|+
T Consensus         2 ~~~~~~gG~~n~vy~~~-----~~~VlR~~~~~~-----~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~~~~   71 (235)
T cd05155           2 IEPVDSGGTDNATFRLG-----DDMSVRLPSAAG-----YAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWS   71 (235)
T ss_pred             ceeccCCCcccceEEcC-----CceEEEcCCccc-----hHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCcceE
Confidence            3567777776 599762     247788765421     223578899999888532   355555544432   24589


Q ss_pred             EeeecCCCCcc
Q 004790          409 VMEYCPGGDLH  419 (730)
Q Consensus       409 VmEy~~GGsL~  419 (730)
                      ||++++|.++.
T Consensus        72 l~~~i~G~~l~   82 (235)
T cd05155          72 VYRWLEGETAT   82 (235)
T ss_pred             EEEeecCCCCC
Confidence            99999998774

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=3.3e-05  Score=93.80  Aligned_cols=203  Identities=23%  Similarity=0.271  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCcccccccccc---c-eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhH
Q 004790          375 LTRAQTEREILQLLDHPFLPTLYTHFETD---R-FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH  450 (730)
Q Consensus       375 ~~~~~~E~~IL~~L~HPnIV~L~~~f~~~---~-~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH  450 (730)
                      +.....|.+.+....|+|++.++.+-...   + .+.+..|+|..-++..+++.-  ...+...++.|..+++.||.|+|
T Consensus       226 i~~~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v--~~i~~~~~r~~~~~~~~GL~~~h  303 (1351)
T KOG1035|consen  226 IQTTEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSV--GSIPLETLRILHQKLLEGLAYLH  303 (1351)
T ss_pred             HHHHHHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhc--cccCHHHHHHHHHHHhhhHHHHH
Confidence            34445566777888999999998876432   2 345566899999998887765  67888999999999999999999


Q ss_pred             hcceeecccCCc---cEEecCCCceEEe--cccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCC
Q 004790          451 MLGVVYRDLKPE---NVLVRDDGHIMLS--DFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPA  525 (730)
Q Consensus       451 ~~gIVHRDLKPe---NILl~~~g~vKL~--DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~  525 (730)
                      +....|.-|...   +-..+.++.+.++  ||+.+....                                         
T Consensus       304 ~~~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~-----------------------------------------  342 (1351)
T KOG1035|consen  304 SLSLEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLP-----------------------------------------  342 (1351)
T ss_pred             HhccceeEEecccccccccCccceeecchhhhcccccCC-----------------------------------------
Confidence            985555444333   3333444555555  666553211                                         


Q ss_pred             CccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCc--ceeechhHHHHHHh
Q 004790          526 CFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSA--VDWWTFGIFLHELL  603 (730)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~--sDIWSLG~iLyELl  603 (730)
                                                          ......+..-+..|.|+|......+..+  .|+|.+|..+..+.
T Consensus       343 ------------------------------------d~~~~~~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~~~~~  386 (1351)
T KOG1035|consen  343 ------------------------------------DNEKSFSDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLLLQLS  386 (1351)
T ss_pred             ------------------------------------CcccchhhcCccccccccccccccchhhhhhHHHHHHHHHhhhh
Confidence                                                0011112344566788888887776554  69999999999998


Q ss_pred             hCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          604 YGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       604 tG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      .|..+-.-.   ......+.       ... .....+++.+|+..++++|++    +.+++.|+|.+-
T Consensus       387 ~~~~i~~~~---~~~~~~l~-------~~~-~~~~~d~~~~~~~~~~~~Rl~----~~~ll~~~f~~~  439 (1351)
T KOG1035|consen  387 QGEDISEKS---AVPVSLLD-------VLS-TSELLDALPKCLDEDSEERLS----ALELLTHPFLRF  439 (1351)
T ss_pred             hcCcccccc---cchhhhhc-------ccc-chhhhhhhhhhcchhhhhccc----hhhhhhchhccc
Confidence            776442111   11111110       011 115678999999999999999    799999999874

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.89  E-value=0.0001  Score=75.09  Aligned_cols=128  Identities=24%  Similarity=0.289  Sum_probs=87.9

Q ss_pred             CCeEEEeEEccCCc-EEEEEEEECCCCeEEEEEEeehhh----------hhh--------HHHHHHHHHHHHHHHhc---
Q 004790          331 SHFRLLKRLGCGDI-GSVYLSELSSTRCYFAMKVMDKAS----------LAS--------RKKLTRAQTEREILQLL---  388 (730)
Q Consensus       331 ~~y~il~~LG~G~f-G~Vyla~~~~t~~~vAvKvi~k~~----------~~~--------~~~~~~~~~E~~IL~~L---  388 (730)
                      .+++.++.||.|.- |.||+++..  |+.||+|+...-.          ...        .....-+..|.+...+|   
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I~--g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~  114 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEID--GRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEA  114 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEEC--CeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhc
Confidence            68999999999999 999999985  4589999932100          000        02233456677765555   


Q ss_pred             CCCCC--cccccccccc------------------ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHH
Q 004790          389 DHPFL--PTLYTHFETD------------------RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY  448 (730)
Q Consensus       389 ~HPnI--V~L~~~f~~~------------------~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~y  448 (730)
                      .+.++  |+.|+++.-.                  ...-||.||++...           .+...    -+.+|+.-|..
T Consensus       115 ~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-----------~~~~~----~~~~~~~dl~~  179 (207)
T PF13095_consen  115 GREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-----------PLQIR----DIPQMLRDLKI  179 (207)
T ss_pred             cccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc-----------ccchh----HHHHHHHHHHH
Confidence            55666  8888877211                  11246777664433           12222    34678888999


Q ss_pred             hHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       449 LH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      ||..||+-+|+|+.|..     .-||+|||.+
T Consensus       180 ~~k~gI~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  180 LHKLGIVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             HHHCCeeeccCcccccc-----CCEEEecccC
Confidence            99999999999999986     2489999854

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.80  E-value=0.0001  Score=75.00  Aligned_cols=134  Identities=21%  Similarity=0.275  Sum_probs=92.2

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh-------------hHHHHHHHHHHHHHHHhcC------CCCCcccc
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA-------------SRKKLTRAQTEREILQLLD------HPFLPTLY  397 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~-------------~~~~~~~~~~E~~IL~~L~------HPnIV~L~  397 (730)
                      ..||+|+.-.||.--+   .....||++......             .........+|+.....+.      +.+|.++|
T Consensus         7 ~~i~~G~~R~cy~HP~---dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~~   83 (199)
T PF10707_consen    7 DLIAQGGERDCYQHPD---DPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRFY   83 (199)
T ss_pred             cccccCCCceEEECCC---CCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccEe
Confidence            4589999999996432   234688998766510             0112344566766665554      88999999


Q ss_pred             ccccccceeeEEeeecCCC------CccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC--
Q 004790          398 THFETDRFSCLVMEYCPGG------DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD--  469 (730)
Q Consensus       398 ~~f~~~~~l~LVmEy~~GG------sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~--  469 (730)
                      ++.+++.-+-+|+|.+.+.      +|.+++..   ..+++ ..   ...+-.-..||-+++|+.+||+|.||++...  
T Consensus        84 G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~---~~~~~-~~---~~~L~~f~~~l~~~~Iv~~dl~~~NIv~~~~~~  156 (199)
T PF10707_consen   84 GFVETNLGLGLVVELIRDADGNISPTLEDYLKE---GGLTE-EL---RQALDEFKRYLLDHHIVIRDLNPHNIVVQRRDS  156 (199)
T ss_pred             EEEecCCceEEEEEEEECCCCCcCccHHHHHHc---CCccH-HH---HHHHHHHHHHHHHcCCeecCCCcccEEEEecCC
Confidence            9999999999999987542      45555543   24555 32   2334445578889999999999999999643  


Q ss_pred             C--ceEEec-cccc
Q 004790          470 G--HIMLSD-FDLS  480 (730)
Q Consensus       470 g--~vKL~D-FGlA  480 (730)
                      |  .+.|+| ||-.
T Consensus       157 ~~~~lvlIDG~G~~  170 (199)
T PF10707_consen  157 GEFRLVLIDGLGEK  170 (199)
T ss_pred             CceEEEEEeCCCCc
Confidence            2  688998 6643

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=97.74  E-value=4.1e-06  Score=102.97  Aligned_cols=259  Identities=12%  Similarity=-0.011  Sum_probs=162.8

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhh--HHHHHHHHHHHHHHHhcCCCCCcccccccc--ccc
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS--RKKLTRAQTEREILQLLDHPFLPTLYTHFE--TDR  404 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~--~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~--~~~  404 (730)
                      .+.++++.=-+|.|.+++--.-+.+-.  .+-+|+.+.-.+..  +-..+....|++-++...|+++...+.-..  +..
T Consensus      1227 ~~e~~EV~l~i~~~~~~R~k~Lr~kid--~Fk~~I~ke~d~e~LsePlkemll~e~de~~~~~h~~~~~~p~rI~ps~s~ 1304 (2724)
T KOG1826|consen 1227 AMEHSEVNLGISNHFHFRNKWLRSKID--WFKFSIYKEYDFENLSEPLKEMLLSERDELREAKHYLTEVDPLRIPPSEST 1304 (2724)
T ss_pred             HhhhhheeeecccceeeccchHhhhhc--eeEEEeehhhhHHHHhhHHHHhhhhhhhhhhhhhceeeecccccCCCCCCh
Confidence            456777776777766654322222222  35666664433221  122334556666677789999988776554  345


Q ss_pred             eeeEEeeecCCCCccccccccCC--CCccHHHHHHhHHHHHHHHHHhHhc-----ceeecccCCccEEecCCCceEEecc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPG--KHFSEYAARFYAAEVLLALEYLHML-----GVVYRDLKPENVLVRDDGHIMLSDF  477 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~--~~lse~~a~~~~~qIl~AL~yLH~~-----gIVHRDLKPeNILl~~~g~vKL~DF  477 (730)
                      ..|.+++|+.+|+++..+-+.-.  ..+.+.-+.....+.+.+..-+|..     -.+|++||+-|.+|..+..+|+.++
T Consensus      1305 ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIVtny~v~~gk~ 1384 (2724)
T KOG1826|consen 1305 EEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIVTNYNVKLGKG 1384 (2724)
T ss_pred             HHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhhhhhhhccceecCCccccccc
Confidence            67899999999999987765322  2233333333334447777777753     2799999999999999999999999


Q ss_pred             cccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccc
Q 004790          478 DLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPEL  557 (730)
Q Consensus       478 GlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (730)
                      |+.+...                                                                         
T Consensus      1385 gLdKIkn------------------------------------------------------------------------- 1391 (2724)
T KOG1826|consen 1385 GLDKIKN------------------------------------------------------------------------- 1391 (2724)
T ss_pred             ccccccC-------------------------------------------------------------------------
Confidence            9985110                                                                         


Q ss_pred             ccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChh
Q 004790          558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYA  637 (730)
Q Consensus       558 ~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~  637 (730)
                         +........++++.|++|++...-.++.++|+|..|+.+|++..|..+|.... +..+..++.....+......+.+
T Consensus      1392 ---p~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~fi~fl-q~~Lkgiidn~tf~sIe~l~pgd 1467 (2724)
T KOG1826|consen 1392 ---PVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAYFIFFL-QPALKGIIDNHTFFSIEKLKPGD 1467 (2724)
T ss_pred             ---chHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHHHHHH-HHHHcCcccccccccccccCCCc
Confidence               01111234688999999999999999889999999999999999998885321 12222222222222222222334


Q ss_pred             HHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          638 SRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      +-.+...+|-+.-.+||+    -...+.-+.|.
T Consensus      1468 aNve~~~~Ll~K~~~rp~----q~isls~d~~a 1496 (2724)
T KOG1826|consen 1468 ANVEALHRLLWKYMERPG----QYISLSRDHFA 1496 (2724)
T ss_pred             ccHHHHHHHHHHhhhcch----hhhhccccccc
Confidence            444555555555678888    34555555554

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.67  E-value=0.00011  Score=73.28  Aligned_cols=130  Identities=28%  Similarity=0.334  Sum_probs=90.3

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCC-ccccccccccceeeEEe
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFL-PTLYTHFETDRFSCLVM  410 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnI-V~L~~~f~~~~~l~LVm  410 (730)
                      ..+..+.||+|.+|.||++.+.+.  .+|+|+-+.+.     ....++.|.++|..+.--++ +++|.+-++    ++.|
T Consensus        23 ~~~v~~~L~KG~~s~Vyl~~~~~~--~~a~Kvrr~ds-----~r~~l~kEakiLeil~g~~~~p~vy~yg~~----~i~m   91 (201)
T COG2112          23 ELRVEKELAKGTTSVVYLGEWRGG--EVALKVRRRDS-----PRRNLEKEAKILEILAGEGVTPEVYFYGED----FIRM   91 (201)
T ss_pred             hhhhhhhhhcccccEEEEeeccCc--eEEEEEecCCc-----chhhHHHHHHHHHHhhhcCCCceEEEechh----hhhh
Confidence            345667899999999999999654  79999875542     33457889999999976655 455555443    3559


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccC-CccEEecCCCceEEecccccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLK-PENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLK-PeNILl~~~g~vKL~DFGlA~  481 (730)
                      ||+.|-.|..+-..     .+    +.-+..++.+---|-.+||-|..|. |..++|-.++.+.|+||.-|+
T Consensus        92 e~i~G~~L~~~~~~-----~~----rk~l~~vlE~a~~LD~~GI~H~El~~~~k~vlv~~~~~~iIDFd~At  154 (201)
T COG2112          92 EYIDGRPLGKLEIG-----GD----RKHLLRVLEKAYKLDRLGIEHGELSRPWKNVLVNDRDVYIIDFDSAT  154 (201)
T ss_pred             hhhcCcchhhhhhc-----cc----HHHHHHHHHHHHHHHHhccchhhhcCCceeEEecCCcEEEEEccchh
Confidence            99998888664331     11    1223345555455667899998886 555555556699999999884

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.60  E-value=0.0002  Score=74.92  Aligned_cols=133  Identities=21%  Similarity=0.213  Sum_probs=76.8

Q ss_pred             EccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCC-CCccccccccccceeeEEeeecCCCC
Q 004790          339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP-FLPTLYTHFETDRFSCLVMEYCPGGD  417 (730)
Q Consensus       339 LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HP-nIV~L~~~f~~~~~l~LVmEy~~GGs  417 (730)
                      +..|-.+.+|+...  ++..+++|+......   ...-...+|.++|+.+..- -.++++....    -++||||++|..
T Consensus         4 ~~~G~tn~~y~~~~--~~~~~vlR~~~~~~~---~~~~~r~~E~~~l~~l~~~g~~P~~i~~~~----~~~v~e~i~G~~   74 (256)
T TIGR02721         4 LSGGLTNRSWRIEH--PGISFVWRPQSPVCK---ALGVDRQREYQILQALSALGLAPKPILVNE----HWLLVEWLEGEV   74 (256)
T ss_pred             CCCcCcCCeEEEEe--CCccEEEeeCCcccc---cccCcHHHHHHHHHHHHhcCCCCceEEEeC----CEEEEEeccCcc
Confidence            55677888998873  455688897654311   1001246788999888533 3355555443    268999999877


Q ss_pred             cccc-----------------ccccC--CCCccH-HHHHHhHHHH---------HHHHHHhHh--------cceeecccC
Q 004790          418 LHTL-----------------RQRQP--GKHFSE-YAARFYAAEV---------LLALEYLHM--------LGVVYRDLK  460 (730)
Q Consensus       418 L~~l-----------------l~~~~--~~~lse-~~a~~~~~qI---------l~AL~yLH~--------~gIVHRDLK  460 (730)
                      +...                 ++..+  +..++. .....|..++         ...+..+-.        ..++|+|+.
T Consensus        75 ~~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~Dl~  154 (256)
T TIGR02721        75 ITLDQFVALDLLLELAALLHQLHSQPRFGYPLSLKARIAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAPLHMDVH  154 (256)
T ss_pred             cccccccCchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCeeecCCCC
Confidence            6421                 11111  111111 1112222111         111222211        258999999


Q ss_pred             CccEEecCCCceEEecccccc
Q 004790          461 PENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       461 PeNILl~~~g~vKL~DFGlA~  481 (730)
                      |.|||++.++ +.|+||..|.
T Consensus       155 ~~Nil~~~~~-~~lIDwE~a~  174 (256)
T TIGR02721       155 AYNLVVTPQG-LKLIDWEYAS  174 (256)
T ss_pred             cCcEEEeCCC-CEEEeccccC
Confidence            9999999877 8999999874

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PRK10593 hypothetical protein; Provisional

Probab=97.60  E-value=0.0007  Score=73.02  Aligned_cols=80  Identities=16%  Similarity=0.084  Sum_probs=56.9

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC---CCCccccccccc---cce
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH---PFLPTLYTHFET---DRF  405 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H---PnIV~L~~~f~~---~~~  405 (730)
                      ...-.+.||.|..+.||+....+.  .+.+|+.+...     ....+.+|.+.|+.|.-   -.++++++++.+   .+.
T Consensus        15 ~~~~~~~i~~G~~~~vy~~~~~~~--~~~~k~~~~~~-----~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~   87 (297)
T PRK10593         15 KLSRVECISEQPYAALWALYDSQG--NPMPLMARSFS-----TPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGP   87 (297)
T ss_pred             hhheeeecCCccceeEEEEEcCCC--CEEEEEecccc-----cchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCC
Confidence            344567899999999999875433  36778743210     11357789999998843   467888876654   466


Q ss_pred             eeEEeeecCCCCc
Q 004790          406 SCLVMEYCPGGDL  418 (730)
Q Consensus       406 l~LVmEy~~GGsL  418 (730)
                      .+||||+++|+++
T Consensus        88 ~~LVmE~i~G~~~  100 (297)
T PRK10593         88 DVLLLERLRGVSV  100 (297)
T ss_pred             eEEEEeccCCEec
Confidence            8999999998765

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.57  E-value=0.00041  Score=74.77  Aligned_cols=143  Identities=20%  Similarity=0.196  Sum_probs=84.7

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCC--CCccccccc------cc
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP--FLPTLYTHF------ET  402 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HP--nIV~L~~~f------~~  402 (730)
                      +....++.|+.|....+|+++.. ++ .+++|+.....  .   ...+..|.++++.|..-  .+++++...      ..
T Consensus        22 ~~~~~i~~~~~G~~n~~y~v~t~-~~-~~vLK~~~~~~--~---~~~i~~e~~~l~~L~~~g~pvp~~i~t~~g~~~~~~   94 (307)
T TIGR00938        22 GELLSLKGIAEGVENSNYLLTTD-VG-RYILTLYEKRV--K---AEELPFFLALTTHLAARGLPVPKPVKSRDGRQLSTL   94 (307)
T ss_pred             CCceeccccCCccccceEEEEeC-CC-cEEEEEecCCC--C---HHHHHHHHHHHHHHHHCCCCCCccccCCCCCeehhc
Confidence            44556788888888999998753 33 47889875421  1   12344567777776322  244444321      22


Q ss_pred             cceeeEEeeecCCCCcccc--------------cccc-CCC--------CccH---HHHH----------HhHHHHHHHH
Q 004790          403 DRFSCLVMEYCPGGDLHTL--------------RQRQ-PGK--------HFSE---YAAR----------FYAAEVLLAL  446 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~l--------------l~~~-~~~--------~lse---~~a~----------~~~~qIl~AL  446 (730)
                      ++..|+||||++|..+...              ++.. .+-        .+..   ....          .....+...+
T Consensus        95 ~g~~~~l~e~i~G~~~~~~~~~~~~~~G~~LA~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~~~~~~~l~~~~  174 (307)
T TIGR00938        95 AGKPACLVEFLQGLSVGRPTAMHCRPVGEVLAWMHLAGAHFPENRKNSLRLEAWHILAEKCFEAAPQLEAHMGAELDKEL  174 (307)
T ss_pred             CCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCCCChHHHHHHHHhhhhcccccCHHHHHHHHHHH
Confidence            4567899999998654211              1100 000        0010   0000          0111233445


Q ss_pred             HHhH-------hcceeecccCCccEEecCCCceEEeccccc
Q 004790          447 EYLH-------MLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       447 ~yLH-------~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      +++.       ..+++|+|+.+.||+++.++.+.|+||+.+
T Consensus       175 ~~l~~~~~~~~~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~  215 (307)
T TIGR00938       175 DYLDKFWPRDLPRGVIHADLFPDNVLFDGDSVKGVIDFYFA  215 (307)
T ss_pred             HHHHhhhhhcCCCccCCCCCCcCcEEEECCceEEEeecccc
Confidence            5553       268999999999999998887799999987

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.56  E-value=0.00035  Score=74.82  Aligned_cols=76  Identities=20%  Similarity=0.317  Sum_probs=50.7

Q ss_pred             EeEEccCCcEEEEEEEECC------CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeE
Q 004790          336 LKRLGCGDIGSVYLSELSS------TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~------t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~L  408 (730)
                      ++.|..|-...||++....      .++.|++|+.....    .......+|.++++.+. +--.++++.++..    .+
T Consensus         3 i~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~----~~~~~r~~E~~~~~~l~~~g~~P~~~~~~~~----~~   74 (302)
T cd05156           3 VSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSV----ELLIDRERELVVFARLSERNLGPKLYGIFPN----GR   74 (302)
T ss_pred             EEEecCcccceeEEEEcCCcccccCCCCeEEEEEecCCC----cceechHHHHHHHHHHHhCCCCCceEEEeCC----Cc
Confidence            4567777778999987654      25679999976532    11233567888888874 2234566666652    36


Q ss_pred             EeeecCCCCcc
Q 004790          409 VMEYCPGGDLH  419 (730)
Q Consensus       409 VmEy~~GGsL~  419 (730)
                      ||||++|..+.
T Consensus        75 v~e~i~G~~l~   85 (302)
T cd05156          75 IEEFIPSRTLT   85 (302)
T ss_pred             hhheeCCCcCC
Confidence            89999987764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.52  E-value=0.00033  Score=70.69  Aligned_cols=97  Identities=28%  Similarity=0.274  Sum_probs=77.2

Q ss_pred             HHHHHHHHhcCC-CCCccccccccccceeeEEeeecCCCCcccc---ccccCCCCccHHHHHHhHHHHHHHHHHhHh---
Q 004790          379 QTEREILQLLDH-PFLPTLYTHFETDRFSCLVMEYCPGGDLHTL---RQRQPGKHFSEYAARFYAAEVLLALEYLHM---  451 (730)
Q Consensus       379 ~~E~~IL~~L~H-PnIV~L~~~f~~~~~l~LVmEy~~GGsL~~l---l~~~~~~~lse~~a~~~~~qIl~AL~yLH~---  451 (730)
                      +.|.-+|+.+.+ ++++++++++-.    ++|.||...+++...   +...  ...++..+..++.+++..+++|+.   
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~CG~----~~v~E~~~~~~~~~~~~~l~~~--~~~~w~~R~~iA~~lL~~l~~l~~~~~   80 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSCGR----FYVVEYVGAGSLYGIYRPLSQF--LQSPWEQRAKIALQLLELLEELDHGPL   80 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeECCC----EEEEEeecCccccccccccccc--cccCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            458888999966 699999999853    579999987776531   1111  235677888899999999999986   


Q ss_pred             cceeecccCCccEEecCCCceEEecccccc
Q 004790          452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       452 ~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      ..+.-.|++++|+-++++|++|++|.+.+.
T Consensus        81 ~~~~lcDv~~~nfgv~~~~~lk~iDld~v~  110 (188)
T PF12260_consen   81 GFFYLCDVSPDNFGVNDDGRLKLIDLDDVF  110 (188)
T ss_pred             CcEEEeecchHHeEEeCCCcEEEEechhcc
Confidence            447778999999999999999999998763

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.42  E-value=0.00026  Score=76.37  Aligned_cols=134  Identities=21%  Similarity=0.322  Sum_probs=93.8

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhh--h---h-H-------------HHHHHHHHHHHHHHhc-CCCC
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--A---S-R-------------KKLTRAQTEREILQLL-DHPF  392 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~--~---~-~-------------~~~~~~~~E~~IL~~L-~HPn  392 (730)
                      +.++..||-|.-+-||.+-+. .|+.+++|+-+....  .   . +             -..-.+.+|...|+.| .|-+
T Consensus        94 ~svGnqIGVGKESDIY~v~d~-~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~gf  172 (465)
T KOG2268|consen   94 ESVGNQIGVGKESDIYVVADE-EGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERGF  172 (465)
T ss_pred             hhhccccccccccceEEEecC-CCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence            678899999999999999876 355788886432111  0   0 0             0112356788888777 3332


Q ss_pred             -CccccccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc
Q 004790          393 -LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH  471 (730)
Q Consensus       393 -IV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~  471 (730)
                       +++.+++    ...|+|||++.|-.|..+.+..        .+..+...+..-+--|-.+|+||+|..-=||+++++++
T Consensus       173 pVPkpiD~----~RH~Vvmelv~g~Pl~~v~~v~--------d~~~ly~~lm~~Iv~la~~GlIHgDFNEFNimv~dd~~  240 (465)
T KOG2268|consen  173 PVPKPIDH----NRHCVVMELVDGYPLRQVRHVE--------DPPTLYDDLMGLIVRLANHGLIHGDFNEFNIMVKDDDK  240 (465)
T ss_pred             CCCCcccc----cceeeHHHhhcccceeeeeecC--------ChHHHHHHHHHHHHHHHHcCceecccchheeEEecCCC
Confidence             3344443    3478999999999887765432        12234445666667788999999999999999999999


Q ss_pred             eEEecccc
Q 004790          472 IMLSDFDL  479 (730)
Q Consensus       472 vKL~DFGl  479 (730)
                      ++++||--
T Consensus       241 i~vIDFPQ  248 (465)
T KOG2268|consen  241 IVVIDFPQ  248 (465)
T ss_pred             EEEeechH
Confidence            99999964

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.34  E-value=0.0017  Score=72.89  Aligned_cols=81  Identities=21%  Similarity=0.210  Sum_probs=56.3

Q ss_pred             EEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhh---hh-HHHHHHHHHHHHHHHhc---CCCCCccccccccccceee
Q 004790          335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL---AS-RKKLTRAQTEREILQLL---DHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~---~~-~~~~~~~~~E~~IL~~L---~HPnIV~L~~~f~~~~~l~  407 (730)
                      -.+.||.|.+..||++.....++.|+||.-.....   .. ....++...|.+.|+.+   .-.+++++|.+-.  ...+
T Consensus        30 ~~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~D~--~~~~  107 (401)
T PRK09550         30 TAREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHYDE--ELAV  107 (401)
T ss_pred             eeeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEECC--CCCE
Confidence            45789999999999999876546799997431100   00 12345677888888876   2356888887744  5578


Q ss_pred             EEeeecCCCC
Q 004790          408 LVMEYCPGGD  417 (730)
Q Consensus       408 LVmEy~~GGs  417 (730)
                      +||||+++..
T Consensus       108 lVME~L~~~~  117 (401)
T PRK09550        108 TVMEDLSDHK  117 (401)
T ss_pred             EEEecCCCcc
Confidence            9999998643

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.30  E-value=0.0023  Score=68.17  Aligned_cols=142  Identities=18%  Similarity=0.174  Sum_probs=85.1

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCC--CCcccccc------cccc
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP--FLPTLYTH------FETD  403 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HP--nIV~L~~~------f~~~  403 (730)
                      +..-++.|..|....+|+....+  ..+++|+....   .   ...+..|+++++.|.+-  .+++++..      ...+
T Consensus        15 ~~~~i~~i~~G~~n~~y~v~~~~--~~~vLr~~~~~---~---~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~   86 (296)
T cd05153          15 ELLSFEGISAGIENTNYFVTTDS--GRYVLTLFEKV---S---AEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELA   86 (296)
T ss_pred             chhheecccCccccceEEEEeCC--CcEEEEEcCCC---C---hHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeC
Confidence            34446778888889999987543  35889987641   1   12356678888777432  24555442      1234


Q ss_pred             ceeeEEeeecCCCCcccc--------------ccc----cCCC----Cc-c--HHHHH--------HhHHHHHHHHHHhH
Q 004790          404 RFSCLVMEYCPGGDLHTL--------------RQR----QPGK----HF-S--EYAAR--------FYAAEVLLALEYLH  450 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~l--------------l~~----~~~~----~l-s--e~~a~--------~~~~qIl~AL~yLH  450 (730)
                      +..++||+|++|..+...              ++.    ....    .. .  .....        .....+..++.++.
T Consensus        87 ~~~~~l~~~i~G~~~~~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  166 (296)
T cd05153          87 GKPAALVEFLAGEHLTRPTAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAEDRALLADELARQD  166 (296)
T ss_pred             CceEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHhccccCHHHHHHHHHHHHHHH
Confidence            567899999999776331              000    0000    00 0  00000        01112233444444


Q ss_pred             h-------cceeecccCCccEEecCCCceEEecccccc
Q 004790          451 M-------LGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       451 ~-------~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      .       .+++|+|+.|.|||++.++.+.|+||+.+.
T Consensus       167 ~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         167 AFDPSDLPRGVIHADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             hhhhhcCCCcCCccCcCcccEEEeCCceEEEeehhhhc
Confidence            3       479999999999999988777999999873

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>PRK05231 homoserine kinase; Provisional

Probab=97.25  E-value=0.0026  Score=68.69  Aligned_cols=140  Identities=16%  Similarity=0.129  Sum_probs=76.4

Q ss_pred             EEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCC--CCcccccc------ccccce
Q 004790          334 RLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP--FLPTLYTH------FETDRF  405 (730)
Q Consensus       334 ~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HP--nIV~L~~~------f~~~~~  405 (730)
                      .-++.|+.|....+|+..... + .+++|++...   ...   .+..|..+++.|...  .+++.+..      ....+.
T Consensus        25 ~~~~~l~~G~~n~~y~v~t~~-g-~~vLK~~~~~---~~~---~l~~~~~~l~~L~~~glpvP~~i~~~~G~~~~~~~g~   96 (319)
T PRK05231         25 LSLKGIAEGIENSNFFLTTTQ-G-EYVLTLFERL---TAE---DLPFFLGLMQHLAARGVPVPAPVARRDGAALGELAGK   96 (319)
T ss_pred             hccchhccccccceEEEEeCC-C-cEEEEEeccC---ChH---HhHHHHHHHHHHHHCCCCCCcceeCCCCCEeeeeCCE
Confidence            345667788888999987643 3 5889987521   112   233455555555211  23343321      123556


Q ss_pred             eeEEeeecCCCCcccc-----------c---cccC-C--------CCccH--HHH-----------HHhHHH-HHHHHHH
Q 004790          406 SCLVMEYCPGGDLHTL-----------R---QRQP-G--------KHFSE--YAA-----------RFYAAE-VLLALEY  448 (730)
Q Consensus       406 l~LVmEy~~GGsL~~l-----------l---~~~~-~--------~~lse--~~a-----------~~~~~q-Il~AL~y  448 (730)
                      .+++|||++|..+...           +   +... +        ..+..  ...           ...+.+ +-..++.
T Consensus        97 ~~~l~~~l~G~~~~~~~~~~~~~~G~~LA~lH~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  176 (319)
T PRK05231         97 PAAIVTFLEGKWPRAPTAAHCAEVGEMLARMHLAGRDFPLERPNLRGLAWWRELAPRLLPFLADEQAALLEAELAAQLAF  176 (319)
T ss_pred             EEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCccCCCCCChHHHHHHHHHHhhccChhHHHHHHHHHHHHHHh
Confidence            7899999998754210           0   0000 0        00000  000           001111 1112223


Q ss_pred             hH-------hcceeecccCCccEEecCCCceEEecccccc
Q 004790          449 LH-------MLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       449 LH-------~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      +.       ..|+||+|+.|.|||++.+...-|+||+.+.
T Consensus       177 ~~~~~~~~lp~~liHgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        177 LASAAWPALPRGVIHADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             hhccccccCCcccCCCCCCCCcEEEECCceEEEEeccccc
Confidence            32       2489999999999999866556899999873

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=97.20  E-value=0.0046  Score=68.00  Aligned_cols=159  Identities=22%  Similarity=0.271  Sum_probs=101.2

Q ss_pred             CCchhhHHhhhhhcCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh--------------------
Q 004790          311 NDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA--------------------  370 (730)
Q Consensus       311 ~~p~~~~~~~~~~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~--------------------  370 (730)
                      .+|+-..++.--...|.+    -.+-..|..|.-+.||.|... +|..+|||+++..-+.                    
T Consensus       128 LDPRTrmvLfrll~RG~i----~~inGCiSTGKEANVYHat~~-dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck  202 (520)
T KOG2270|consen  128 LDPRTRMVLFRLLNRGVI----VEINGCISTGKEANVYHATEE-DGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCK  202 (520)
T ss_pred             cChHHHHHHHHHHhcCee----eecccccccCccceeEeeecC-CCceEEEEEEeeeEEEEechhhhccceeeeeccccc
Confidence            455555544433344443    244466778999999998765 4557999998532110                    


Q ss_pred             -hHHHHH--HHHHHHHHHHhcCCCCCccccccccccceeeEEeeecCCCCccc-cccccCCCCccHHHHHHhHHHHHHHH
Q 004790          371 -SRKKLT--RAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLAL  446 (730)
Q Consensus       371 -~~~~~~--~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~GGsL~~-ll~~~~~~~lse~~a~~~~~qIl~AL  446 (730)
                       +...+-  -+..|++-|.+|....|+----+..  ....|||+|+.+..... .|..   ..++...++.+..|++.-+
T Consensus       203 ~NPRKMVk~WAEKE~RNLkRl~~aGIP~PePIlL--k~hVLVM~FlGrdgw~aPkLKd---~~ls~~ka~~~Y~~~v~~M  277 (520)
T KOG2270|consen  203 HNPRKMVKTWAEKEMRNLKRLNNAGIPCPEPILL--KNHVLVMEFLGRDGWAAPKLKD---ASLSTSKARELYQQCVRIM  277 (520)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhcCCCCCCceee--ecceEeeeeccCCCCcCccccc---ccCChHHHHHHHHHHHHHH
Confidence             112222  2345666677775444432111111  23469999994333322 2222   4577778888888888888


Q ss_pred             HHh-HhcceeecccCCccEEecCCCceEEeccccc
Q 004790          447 EYL-HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       447 ~yL-H~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      .-| |..++||.||.-=|+|+. +|++.++|-+-+
T Consensus       278 R~lY~~c~LVHADLSEfN~Lyh-dG~lyiIDVSQS  311 (520)
T KOG2270|consen  278 RRLYQKCRLVHADLSEFNLLYH-DGKLYIIDVSQS  311 (520)
T ss_pred             HHHHHHhceeccchhhhhheEE-CCEEEEEEcccc
Confidence            887 578999999999999995 789999998765

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=97.09  E-value=0.005  Score=65.82  Aligned_cols=29  Identities=28%  Similarity=0.426  Sum_probs=24.8

Q ss_pred             ceeecccCCccEEecCCCc-eEEecccccc
Q 004790          453 GVVYRDLKPENVLVRDDGH-IMLSDFDLSL  481 (730)
Q Consensus       453 gIVHRDLKPeNILl~~~g~-vKL~DFGlA~  481 (730)
                      .++|+|+.|.|||++.++. .-|+||+.+.
T Consensus       186 ~lvHGD~~~~Nilv~~~~~~~gviDWe~a~  215 (276)
T cd05152         186 VLVHGDLHPGHILIDEDARVTGLIDWTEAK  215 (276)
T ss_pred             eeEeCCCCCCcEEEeCCCCEEEEECcHhcc
Confidence            4899999999999997565 5699999874

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=96.85  E-value=0.0064  Score=66.62  Aligned_cols=141  Identities=13%  Similarity=0.208  Sum_probs=80.6

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCC---CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCC-ccccccccccceee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSST---RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFL-PTLYTHFETDRFSC  407 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t---~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnI-V~L~~~f~~~~~l~  407 (730)
                      .+++ +.|..|=...+|++...+.   +..|++|+......    ..-.-.+|..+++.+..-++ +++++++..+    
T Consensus        16 ~i~i-~~l~gGlTN~~~~v~~~~~~~~~~~~v~Ri~g~~t~----~~IdR~~E~~il~~l~~~gl~P~~l~~~~~G----   86 (330)
T PLN02421         16 DFSV-ERISGGITNLLLKVSVKEENGNEVSVTVRLFGPNTD----YVIDRERELQAIKYLSAAGFGAKLLGVFGNG----   86 (330)
T ss_pred             ceEE-EEeCCcccceEEEEEecCCCCCCceEEEEEecCCcC----eEechHHHHHHHHHHHhcCCCCceeEEeCCc----
Confidence            3444 4455577788999876542   23688998754321    11223568889988854333 5677766432    


Q ss_pred             EEeeecCCCCccc--c------------c---cccC--C-CCcc-HHHHHHhHHH----------------------HHH
Q 004790          408 LVMEYCPGGDLHT--L------------R---QRQP--G-KHFS-EYAARFYAAE----------------------VLL  444 (730)
Q Consensus       408 LVmEy~~GGsL~~--l------------l---~~~~--~-~~ls-e~~a~~~~~q----------------------Il~  444 (730)
                      +|.+|++|..|..  +            +   +..+  . ..++ ...+..|..+                      +..
T Consensus        87 ~i~~fi~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~  166 (330)
T PLN02421         87 MIQSFINARTLTPSDMRKPKVAAEIAKELRRLHQVEIPGSKEPQLWNDIFKFYEKASTVKFEDPEKQKKYETISFEELRD  166 (330)
T ss_pred             EeehhhcCCCCChHHCCCHHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHhhhcccCcHHHhhhhcccCHHHHHH
Confidence            5899998876632  1            0   0110  0 0011 1122222222                      111


Q ss_pred             HHHHhH----hc----ceeecccCCccEEecC-CCceEEecccccc
Q 004790          445 ALEYLH----ML----GVVYRDLKPENVLVRD-DGHIMLSDFDLSL  481 (730)
Q Consensus       445 AL~yLH----~~----gIVHRDLKPeNILl~~-~g~vKL~DFGlA~  481 (730)
                      -+..+.    ..    -++|.||.+.|||++. ++.++|+||..|.
T Consensus       167 ~~~~l~~~~~~~~~~~v~CHnDl~~~NiL~~~~~~~l~lID~EYag  212 (330)
T PLN02421        167 EIVELKEITDSLKAPVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGS  212 (330)
T ss_pred             HHHHHHHHhccCCCCeEEEECCCCcccEEEeCCCCcEEEEcccccC
Confidence            122221    11    2799999999999975 5789999999883

>PLN02236 choline kinase

Probab=96.84  E-value=0.0055  Score=67.56  Aligned_cols=140  Identities=15%  Similarity=0.191  Sum_probs=83.7

Q ss_pred             EEEeEEccCCcEEEEEEEECC----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeE
Q 004790          334 RLLKRLGCGDIGSVYLSELSS----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       334 ~il~~LG~G~fG~Vyla~~~~----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~L  408 (730)
                      .-++.|-.|-...+|++....    .++.|++|+.....   ...+. ..+|..+++.+. +---++++++|..+    .
T Consensus        39 ~~i~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t---~~~id-R~~E~~~~~~l~~~gl~P~~~~~~~~g----~  110 (344)
T PLN02236         39 LQVIPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGV---ELFFD-RDDEIRTFECMSRHGQGPRLLGRFPNG----R  110 (344)
T ss_pred             EEEEEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCC---Ceeec-hHHHHHHHHHHHHcCCCCceEEEECCc----e
Confidence            344566568888999987533    24678999886532   12222 267899998884 44445677777543    5


Q ss_pred             EeeecCCCCcccc-----------------cccc--CCCC-c-cHHHHHHhHHHH-----------------HHHHHHh-
Q 004790          409 VMEYCPGGDLHTL-----------------RQRQ--PGKH-F-SEYAARFYAAEV-----------------LLALEYL-  449 (730)
Q Consensus       409 VmEy~~GGsL~~l-----------------l~~~--~~~~-l-se~~a~~~~~qI-----------------l~AL~yL-  449 (730)
                      |+||++|.+|...                 ++..  ++.. + .......|..++                 ...+..| 
T Consensus       111 v~efi~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~L~  190 (344)
T PLN02236        111 VEEFIHARTLSAADLRDPEISALIAAKLREFHSLDMPGPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDSLEDEINLLE  190 (344)
T ss_pred             EEEeeCCCCCCHHHcCChHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhhcCcchhhhcCHHHHHHHHHHHH
Confidence            8999988776421                 0000  0110 1 112222232111                 1112122 


Q ss_pred             -------HhcceeecccCCccEEecC-CCceEEecccccc
Q 004790          450 -------HMLGVVYRDLKPENVLVRD-DGHIMLSDFDLSL  481 (730)
Q Consensus       450 -------H~~gIVHRDLKPeNILl~~-~g~vKL~DFGlA~  481 (730)
                             +...++|+||++.|||+++ ++.+.|+||..+.
T Consensus       191 ~~~~~~~~~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~  230 (344)
T PLN02236        191 KELSGDDQEIGFCHNDLQYGNIMIDEETRAITIIDYEYAS  230 (344)
T ss_pred             HHhcccCCCceEEeCCCCcCcEEEeCCCCcEEEEeehhcc
Confidence                   1236899999999999986 4789999999884

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=96.68  E-value=0.015  Score=62.21  Aligned_cols=28  Identities=29%  Similarity=0.545  Sum_probs=25.3

Q ss_pred             cceeecccCCccEEecCCCceEEeccccc
Q 004790          452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       452 ~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      .+++|+|+.+.|||++. +.+.|+||+.+
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~  214 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYC  214 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECccc
Confidence            57999999999999987 67899999976

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=96.41  E-value=0.01  Score=60.25  Aligned_cols=31  Identities=35%  Similarity=0.591  Sum_probs=21.8

Q ss_pred             cceeecccCCccEEe-cCCCceEEeccccccc
Q 004790          452 LGVVYRDLKPENVLV-RDDGHIMLSDFDLSLR  482 (730)
Q Consensus       452 ~gIVHRDLKPeNILl-~~~g~vKL~DFGlA~~  482 (730)
                      ..++|.||.+.|||+ +.++.++|+||..|..
T Consensus       143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~  174 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNKDGEVKLIDFEYAGY  174 (211)
T ss_dssp             EEEE-S--SGGGEEETSSSSCEEE--GTT-EE
T ss_pred             ceEeeccCccccEEeccCCCeEEEecHHHHhh
Confidence            458999999999999 8889999999998843

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=96.28  E-value=0.033  Score=60.03  Aligned_cols=76  Identities=21%  Similarity=0.258  Sum_probs=48.6

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc---CCCCCccccccccccceeeEE
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL---DHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L---~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .+-.+.|+-|....+|+..  .+++.|.+|+-....      ...+..|.+-|+.|   .--.+++.+.+.+.++..|||
T Consensus        19 i~~~~~v~GG~i~~a~~~~--~~~~~~FvK~~~~~~------~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLl   90 (288)
T PF03881_consen   19 ITSIEPVSGGDINEAYRLD--TDGGSYFVKVNSESG------RDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLL   90 (288)
T ss_dssp             --EEEEE--SSSSEEEEEE--TTS-EEEEEEEEGGG------CCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEE
T ss_pred             eeeeEecCCCChhheEEEE--CCCccEEEEecChhh------HHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEE
Confidence            4566789999999999987  566679999876322      23467788888887   344688899988877778999


Q ss_pred             eeecCCC
Q 004790          410 MEYCPGG  416 (730)
Q Consensus       410 mEy~~GG  416 (730)
                      |||++.+
T Consensus        91 le~l~~~   97 (288)
T PF03881_consen   91 LEFLEMG   97 (288)
T ss_dssp             EE-----
T ss_pred             EEeecCC
Confidence            9999876

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=96.09  E-value=0.015  Score=64.55  Aligned_cols=76  Identities=18%  Similarity=0.155  Sum_probs=49.6

Q ss_pred             EEccCCcEEEEEEEECCCCeEEEEEEeehhhh----hhHHHHHHHHHHHHHHHhcC--CC-CCccccccccccceeeEEe
Q 004790          338 RLGCGDIGSVYLSELSSTRCYFAMKVMDKASL----ASRKKLTRAQTEREILQLLD--HP-FLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       338 ~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~----~~~~~~~~~~~E~~IL~~L~--HP-nIV~L~~~f~~~~~l~LVm  410 (730)
                      .||-|....||++....+++-++||.-....-    .-.-...+...|.+.|+...  -| +++++|.  .+.....+||
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~--~D~e~~~~vM   79 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFH--FDTEMAVTVM   79 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEE--EccccceehH
Confidence            57999999999999865446799996432111    11233456778888887763  23 5666553  3344456999


Q ss_pred             eecCC
Q 004790          411 EYCPG  415 (730)
Q Consensus       411 Ey~~G  415 (730)
                      |+++.
T Consensus        80 EdL~~   84 (370)
T TIGR01767        80 EDLSH   84 (370)
T ss_pred             hhCcc
Confidence            99954

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=96.04  E-value=0.07  Score=58.33  Aligned_cols=149  Identities=12%  Similarity=0.149  Sum_probs=84.0

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCC--Cccccccccccc--ee
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF--LPTLYTHFETDR--FS  406 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPn--IV~L~~~f~~~~--~l  406 (730)
                      ....++..+-.|---.+|.....  ++.+++. ... ............+|..+|+.+.--.  +...++.+.++.  ..
T Consensus        25 ~~~~~v~~~~~G~sn~t~~~~~~--~~~~vlR-~P~-~~~~~~~~~~~~re~~~i~~l~~~~vP~p~~~~~~~~~~~g~p  100 (321)
T COG3173          25 AGLLIVEEISGGWSNDTFRLGDT--GQKYVLR-KPP-RGDPVESAHDEKREYRVIAALLDVDVPVPRAFGLCGEGYLGTP  100 (321)
T ss_pred             CCCceeeeccCCcccceEEEecC--CceEEEe-cCC-ccccchhhhHHHhHHHHHHHhcCCCCCCcccccccccCCCCCc
Confidence            34455555544444455555543  5667777 321 1122244455678888888874323  334555565555  67


Q ss_pred             eEEeeecCCCCccccccccC----------------------------CC--CccHHHHHHhHHHH--------------
Q 004790          407 CLVMEYCPGGDLHTLRQRQP----------------------------GK--HFSEYAARFYAAEV--------------  442 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~----------------------------~~--~lse~~a~~~~~qI--------------  442 (730)
                      |.||+|++|..+........                            +.  .+...+...+..+.              
T Consensus       101 f~v~~~veGe~~~~~~~~~~~~~~~~~~~l~~~La~LH~ida~~~~~~g~~~~~~~rql~~~~~~~~~~~~~~~~~~p~~  180 (321)
T COG3173         101 FYVMEWVEGEVVWSALPPESLGRQFALDALADFLAELHSIDAAGLPDPGKPNAYRGRQLARWDDEYRRAKKELGGRIPLA  180 (321)
T ss_pred             eEEEEEecceeccCcCCcccchHHHHHHHHHHHHHHHhCCCCcCCCCCCccCccccchhhHHHHHHHHHHHhccCCCchH
Confidence            99999998844422111000                            00  00111111122222              


Q ss_pred             HHHHHHhHhc--------ceeecccCCccEEecCCCceEEecccccccc
Q 004790          443 LLALEYLHML--------GVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       443 l~AL~yLH~~--------gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ..-..+|+.+        .+||+|+.+.||||+.++-+-++||+++..-
T Consensus       181 ~~~~~Wl~~~~p~~~~~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lG  229 (321)
T COG3173         181 DRLIKWLEANRPPWAGPPVLVHGDYRPGNLIIDPGRPTGVLDWELATLG  229 (321)
T ss_pred             HHHHHHHHhcCCCcCCCceeeeCCcccCCEEEeCCCeeEEEeccccccC
Confidence            2224444432        3899999999999999988999999998543

>PTZ00384 choline kinase; Provisional

Probab=95.93  E-value=0.029  Score=62.87  Aligned_cols=77  Identities=18%  Similarity=0.283  Sum_probs=48.9

Q ss_pred             EEeEEccCCcEEEEEEEECCCC-eE-----EEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceee
Q 004790          335 LLKRLGCGDIGSVYLSELSSTR-CY-----FAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~t~-~~-----vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~  407 (730)
                      .++.|..|-...+|++...... ..     |.+++....    ....-.-.+|.++++.|. +-.-+++++.|..    +
T Consensus        54 ~i~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~g~~----~~l~IdR~~E~~i~~~Ls~~glgP~l~~~f~~----g  125 (383)
T PTZ00384         54 EIKKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSSTY----NSLVIDNDLQYNIAKLLGDNNFGPKIIGRFGD----F  125 (383)
T ss_pred             EEEEeCCcccceEEEEEecCCCCCccccceEEEEeccCC----CceEeccHHHHHHHHHHHhCCCCCeEEEecCC----E
Confidence            4456666888999999764432 22     444432111    111122356899999984 5566778888864    5


Q ss_pred             EEeeecCCCCcc
Q 004790          408 LVMEYCPGGDLH  419 (730)
Q Consensus       408 LVmEy~~GGsL~  419 (730)
                      +|.||++|..|.
T Consensus       126 ~l~efIeGr~l~  137 (383)
T PTZ00384        126 TIQEWVEGNTMG  137 (383)
T ss_pred             EEEEEeccccCC
Confidence            999999998774

>PLN02756 S-methyl-5-thioribose kinase

Probab=95.90  E-value=0.06  Score=60.73  Aligned_cols=77  Identities=22%  Similarity=0.225  Sum_probs=53.0

Q ss_pred             EEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhh-hh---HHHHHHHHHHHHHHHhcC---CCCCccccccccccceee
Q 004790          335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL-AS---RKKLTRAQTEREILQLLD---HPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~-~~---~~~~~~~~~E~~IL~~L~---HPnIV~L~~~f~~~~~l~  407 (730)
                      ..+.||-|....||+....  +..|+||.-..... ..   .....+...|.+.|+.+.   ..+++++|.+.++  ..+
T Consensus        36 ~~~eiggGn~N~VyrV~~~--~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~ded--~~v  111 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVSS--SGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDRT--MAL  111 (418)
T ss_pred             eEEEcCCCceeeEEEEEcC--CccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECCC--CCE
Confidence            4688999999999999874  33588997541111 00   013455667777777663   3588889888774  357


Q ss_pred             EEeeecCC
Q 004790          408 LVMEYCPG  415 (730)
Q Consensus       408 LVmEy~~G  415 (730)
                      +||||+++
T Consensus       112 lvME~L~~  119 (418)
T PLN02756        112 IGMRYLEP  119 (418)
T ss_pred             EEEeecCC
Confidence            89999977

>PRK12396 5-methylribose kinase; Reviewed

Probab=94.91  E-value=0.064  Score=60.29  Aligned_cols=78  Identities=22%  Similarity=0.327  Sum_probs=51.7

Q ss_pred             EeEEccCCcEEEEEEEECCCCeEEEEEEeehhh---hhhHHHHHHHHHHHHHHHhcC--CC-CCccccccccccceeeEE
Q 004790          336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS---LASRKKLTRAQTEREILQLLD--HP-FLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~---~~~~~~~~~~~~E~~IL~~L~--HP-nIV~L~~~f~~~~~l~LV  409 (730)
                      ++.||-|.-..||++.+...++-++||.-....   ..-.-...+...|.++|+.+.  -| +++++|.  .+.....+|
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~vy~--~D~e~~~~v  111 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKVYL--FDSVMNCCV  111 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeEEE--ECcHHhhHH
Confidence            788999999999999985334568888642111   011233567788899988763  23 5666664  344455689


Q ss_pred             eeecCC
Q 004790          410 MEYCPG  415 (730)
Q Consensus       410 mEy~~G  415 (730)
                      ||+++.
T Consensus       112 MEdL~~  117 (409)
T PRK12396        112 MEDLSD  117 (409)
T ss_pred             HHhCcc
Confidence            998854

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=94.89  E-value=0.16  Score=54.94  Aligned_cols=29  Identities=14%  Similarity=0.114  Sum_probs=27.0

Q ss_pred             ceeecccCCccEEecCCCceEEecccccc
Q 004790          453 GVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       453 gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      +++|+|+.+.|||++.++.+.++||..+.
T Consensus       197 ~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~  225 (309)
T TIGR02904       197 VLVHGKLSLSHFLYDETRGGYFINFEKAS  225 (309)
T ss_pred             eeeCCCCcHHhEEEcCCCCEEEEEhhhcc
Confidence            79999999999999999999999999873

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PTZ00296 choline kinase; Provisional

Probab=94.86  E-value=0.19  Score=57.52  Aligned_cols=79  Identities=15%  Similarity=0.240  Sum_probs=51.2

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCC--------CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCC-cccccccc
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSST--------RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFL-PTLYTHFE  401 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t--------~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnI-V~L~~~f~  401 (730)
                      ++. -++.|..|=.-.+|++.....        ++.|.+|+.....   .... ...+|..+++.+..-.| +++++.|.
T Consensus       106 ~~I-~i~~l~gGlTN~~f~v~~~~~~~~~~~~~~~~~lvRiyG~~t---e~lI-dR~~E~~v~~~ls~~gi~P~l~~~f~  180 (442)
T PTZ00296        106 DDV-RVNQILSGLTNQLFEVSLKEETANNYPSIRRRVLFRIYGKDV---DELY-NPISEFEVYKTMSKYRIAPQLLNTFS  180 (442)
T ss_pred             ccE-EEEEecCcccCceEEEEecCCCCccccCcCceEEEEecCCCc---ccee-CHHHHHHHHHHHHHCCCCCceEEEeC
Confidence            455 667787888889999976522        4578999875432   1111 23568888887743333 46676664


Q ss_pred             ccceeeEEeeecCCCCc
Q 004790          402 TDRFSCLVMEYCPGGDL  418 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL  418 (730)
                          -+.|.||++|-.|
T Consensus       181 ----gg~I~efi~g~~l  193 (442)
T PTZ00296        181 ----GGRIEEWLYGDPL  193 (442)
T ss_pred             ----CCEEEEeeCCccC
Confidence                2467999988755

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=94.70  E-value=0.068  Score=59.06  Aligned_cols=85  Identities=21%  Similarity=0.281  Sum_probs=57.8

Q ss_pred             CCCCCccccccc-cccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEe
Q 004790          389 DHPFLPTLYTHF-ETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLV  466 (730)
Q Consensus       389 ~HPnIV~L~~~f-~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl  466 (730)
                      .-++..+++-+- ....++|++|++- |+.|... ..     -...++..++.+.+.-+.-+.. ...=||||.-.||||
T Consensus       283 g~~~~e~~~vv~~de~~y~yl~~kdh-gt~is~i-k~-----~~~~e~lsff~s~~sil~~lekkf~fehrnlt~~niLI  355 (488)
T COG5072         283 GSVFLETLKVVSLDETLYLYLHFKDH-GTPISII-KA-----DRSEEELSFFWSCISILDILEKKFPFEHRNLTLDNILI  355 (488)
T ss_pred             cchhhhcceEEecCCceEEEEEEecC-Cceeeee-ec-----ccHHHHHHHHHHHHHHHhhhhhcCCcccccccccceee
Confidence            344444444333 3445678899986 6666532 22     2334555566777766665553 358899999999999


Q ss_pred             cCCCceEEecccccc
Q 004790          467 RDDGHIMLSDFDLSL  481 (730)
Q Consensus       467 ~~~g~vKL~DFGlA~  481 (730)
                      + +|.|.|+||-+++
T Consensus       356 d-~GnvtLIDfklsR  369 (488)
T COG5072         356 D-EGNVTLIDFKLSR  369 (488)
T ss_pred             e-cCceEEEEeeeee
Confidence            9 9999999999986

>PRK06148 hypothetical protein; Provisional

Probab=94.13  E-value=0.38  Score=60.57  Aligned_cols=31  Identities=32%  Similarity=0.415  Sum_probs=26.4

Q ss_pred             cceeecccCCccEEecCCC--ceE-Eeccccccc
Q 004790          452 LGVVYRDLKPENVLVRDDG--HIM-LSDFDLSLR  482 (730)
Q Consensus       452 ~gIVHRDLKPeNILl~~~g--~vK-L~DFGlA~~  482 (730)
                      .++||.|+.+.|||++.++  ++. |+|||-+..
T Consensus       203 ~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~~  236 (1013)
T PRK06148        203 AQVIHNDANDYNILVDADDGERISGLIDFGDAVH  236 (1013)
T ss_pred             cceECCCCCcccEEEcCCCCcceEEEEECccccc
Confidence            5799999999999999875  565 999998754

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=93.65  E-value=0.45  Score=52.42  Aligned_cols=137  Identities=27%  Similarity=0.355  Sum_probs=80.0

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC---CCC---Cccccc----ccccccee
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD---HPF---LPTLYT----HFETDRFS  406 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~---HPn---IV~L~~----~f~~~~~l  406 (730)
                      ..|.+ .-..||+.+....+  +++|+.+.. . .   ...+.-|...|+.|.   .+=   +..+-+    .+....+.
T Consensus        32 ~~l~s-~eN~~f~~~~~~g~--~iLki~~~~-~-~---~~~i~~el~~l~~La~~~i~v~~Pl~~~dG~~l~~~~~~~r~  103 (331)
T COG2334          32 RGLNS-EENSNFRVQTEDGR--YILKIYRPG-W-T---RAEIPFELALLQHLAERGIPVPAPLPSLDGELLEALSGGPRP  103 (331)
T ss_pred             ccccc-ccCceEEEEecCCC--eEEEEecCC-C-C---HHHHHHHHHHHHHHHHcCCCCCCCccCCCcchhhhccCCcee
Confidence            34555 56679998876554  499998775 2 2   123556777777762   111   233222    22222377


Q ss_pred             eEEeeecCCCCccc-ccc------------------cc----CCC--CccHH----HH---------HHhHHHHHHHHHH
Q 004790          407 CLVMEYCPGGDLHT-LRQ------------------RQ----PGK--HFSEY----AA---------RFYAAEVLLALEY  448 (730)
Q Consensus       407 ~LVmEy~~GGsL~~-ll~------------------~~----~~~--~lse~----~a---------~~~~~qIl~AL~y  448 (730)
                      +-|++|++|..+.. ...                  ..    +..  ...+.    ..         .....++...++.
T Consensus       104 a~lf~~l~G~~~~~~~~~~~~~~lG~~LgrlH~a~~~f~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~~l~a~~~~~~~~  183 (331)
T COG2334         104 AALFEYLPGRPLERDDNAEQLEELGRMLGRLHLALRGFPFERPNALRRLEWDILEPRALLRLDLVEPEDLRAALLAALDR  183 (331)
T ss_pred             EEEEEecCCcCcCCCCcHHHHHHHHHHHHHHHHHhCcCCccCCCcccccchhhhcchhhhhhcccCchhhHHHHHHHHHH
Confidence            88999999988872 100                  00    000  01110    00         0123344445555


Q ss_pred             hHh--------cc--eeecccCCccEEecCCCc-eEEecccccc
Q 004790          449 LHM--------LG--VVYRDLKPENVLVRDDGH-IMLSDFDLSL  481 (730)
Q Consensus       449 LH~--------~g--IVHRDLKPeNILl~~~g~-vKL~DFGlA~  481 (730)
                      +.+        .+  +||.|+.|.|||++.+.. +.++|||-+.
T Consensus       184 ~~~~~~~~lp~~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         184 LLARLPAHLPALGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             HHhhchhhCCcccceeeecCCCccceeEcCCCCeeeEEEccccc
Confidence            543        34  999999999999998874 8999999873

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=92.93  E-value=0.04  Score=63.00  Aligned_cols=80  Identities=19%  Similarity=0.165  Sum_probs=53.3

Q ss_pred             CcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCC-----------CCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          588 SAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS-----------PATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       588 ~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~-----------~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      +++|||++|.++.|+..|...|....+.+.+..+.. -+..+..           ...+.-..++..+|+-..|..|+. 
T Consensus       110 pKsdVwsl~~i~~el~L~~~l~~~~~~s~~l~~i~k-~~~~d~~~~~~a~e~~~~~~~d~~~~~~~~~c~~~~~~ir~l-  187 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGISLEAELTESEYLEILLK-YYTDDQELLSTAMEHLIQLLADKKRLPLLKKCLWLEPIIRPL-  187 (725)
T ss_pred             cchhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-hccCchhHHHHHHHHHHHHhhhHhHHHHhccCCccccccccc-
Confidence            399999999999999999988875544333322211 0011100           122445567889999999999996 


Q ss_pred             hhcHHHHHcCCCCCCC
Q 004790          657 KRGATEIKQHPFFEGV  672 (730)
Q Consensus       657 ~~~a~elL~HPfF~~v  672 (730)
                         ..++.+|+-|.++
T Consensus       188 ---~~~~~k~~i~~ev  200 (725)
T KOG1093|consen  188 ---PMELSKRCSFTEV  200 (725)
T ss_pred             ---hhHHhcCccHHHH
Confidence               5777888877654

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=92.70  E-value=0.25  Score=55.46  Aligned_cols=60  Identities=27%  Similarity=0.188  Sum_probs=44.2

Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhH-hcceeecccCCccEEecC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH-MLGVVYRDLKPENVLVRD  468 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH-~~gIVHRDLKPeNILl~~  468 (730)
                      ..||-+|..|..+..++...   ..+|...+.++.-...||--|- --+++|.||.|.|||+.-
T Consensus       320 ~vl~E~~~~Gl~v~~~v~~~---~~pe~l~kkva~lg~~AllkMl~vDNFvHaDlHPGNVlirf  380 (565)
T KOG1236|consen  320 LVLVETYERGLSVLRFVKWK---SQPEALVKKVAKLGVNALLKMLIVDNFVHADLHPGNVLIRF  380 (565)
T ss_pred             ceeeeeccccccHHhhhhcc---cChHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcEEEEe
Confidence            45777899998888877653   4566666666666666655443 467999999999999964

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.43  E-value=0.77  Score=48.17  Aligned_cols=80  Identities=25%  Similarity=0.342  Sum_probs=58.2

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc---CCCCCccccccccccceeeE
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL---DHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L---~HPnIV~L~~~f~~~~~l~L  408 (730)
                      +.+..+.+--|..-..|...+-.  ..|-+|+-.      +.+...+..|+.-|+.|   +.-.+++.+.+-....+.||
T Consensus        17 ~i~er~~v~gG~inea~~v~dg~--~~~FvK~n~------~~~~~~f~AEa~gL~~la~s~ti~VP~vi~~G~~~~~syl   88 (286)
T COG3001          17 EIKEREEVSGGDINEAWRLRDGT--DPFFVKCNQ------REQLSMFTAEADGLELLARSNTITVPKVIAVGASRDHSYL   88 (286)
T ss_pred             hhhcccccCCccccceeEeecCC--cceEEEecc------hhhHHHHHHHHHHHHHHHhcCCccccceEEecCCCCeeEE
Confidence            44555666667777777776532  357788743      34556778888888777   34568889999999999999


Q ss_pred             EeeecCCCCcc
Q 004790          409 VMEYCPGGDLH  419 (730)
Q Consensus       409 VmEy~~GGsL~  419 (730)
                      ||||++-+.+.
T Consensus        89 Vle~L~~~~~d   99 (286)
T COG3001          89 VLEYLPTGPLD   99 (286)
T ss_pred             EEeeccCCCCC
Confidence            99999987664

>PRK11768 serine/threonine protein kinase; Provisional

Probab=92.34  E-value=0.89  Score=49.68  Aligned_cols=72  Identities=11%  Similarity=-0.030  Sum_probs=41.6

Q ss_pred             CCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCC--CCcccc---c--cccccceeeEEeeecC
Q 004790          342 GDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP--FLPTLY---T--HFETDRFSCLVMEYCP  414 (730)
Q Consensus       342 G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HP--nIV~L~---~--~f~~~~~l~LVmEy~~  414 (730)
                      +.-..||+..... +..|++|+.+....    ....+..|.+.+..|...  .++...   +  .+..++..+.|+++++
T Consensus        36 s~eN~vy~v~~~~-~~~~vlKv~r~~~~----~~~~i~~E~~~l~~L~~~gipv~~p~~~~G~~~~~~~g~~~~l~~~~~  110 (325)
T PRK11768         36 SYENRVYQFGDED-GRRVVAKFYRPERW----SDAQILEEHAFALELAEAEIPVVAPLAFNGQTLHEHQGFRFALFPRRG  110 (325)
T ss_pred             cccceEEEEecCC-CCEEEEEEcCcccC----CHHHHHHHHHHHHHHHHCCCCCCCCccCCCCEEEEECCEEEEEEeeeC
Confidence            4446799887643 44699998854321    123355677777766211  122211   1  1223567788999998


Q ss_pred             CCCc
Q 004790          415 GGDL  418 (730)
Q Consensus       415 GGsL  418 (730)
                      |..+
T Consensus       111 G~~~  114 (325)
T PRK11768        111 GRAP  114 (325)
T ss_pred             CCCC
Confidence            7643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	730
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		1e-28
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		1e-28
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		3e-27
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		3e-27
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		4e-27
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		1e-26
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		3e-26
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		3e-26
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		3e-26
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		3e-26
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		3e-26
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		4e-26
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		4e-26
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		4e-26
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		4e-26
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		5e-26
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		5e-26
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		5e-26
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		6e-26
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		6e-26
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		7e-26
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		7e-26
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		8e-26
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		8e-26
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		1e-25
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		1e-25
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		6e-24
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		2e-17
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		6e-24
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		2e-17
3g51_A	325	Structural Diversity Of The Active Conformation Of		7e-24
3g51_A	325	Structural Diversity Of The Active Conformation Of		2e-17
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		3e-23
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		3e-18
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		1e-22
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		2e-15
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		1e-22
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		4e-15
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		1e-22
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		4e-15
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		3e-22
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		3e-22
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		3e-15
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		3e-22
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		1e-14
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		3e-22
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-15
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		3e-22
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		2e-15
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		3e-22
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		3e-15
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		4e-22
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		4e-22
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		1e-15
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		4e-22
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		2e-15
4ae6_A	343	Structure And Function Of The Human Sperm-specific		4e-22
4ae6_A	343	Structure And Function Of The Human Sperm-specific		2e-15
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		4e-22
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		2e-15
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		4e-22
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		4e-15
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		4e-22
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		2e-15
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		4e-22
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		2e-15
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		4e-22
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		2e-15
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		5e-22
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		1e-15
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		6e-22
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		2e-15
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		7e-22
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		2e-15
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		7e-22
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		2e-15
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		7e-22
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		2e-15
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		8e-22
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		2e-15
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		9e-22
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		2e-20
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		1e-21
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		2e-15
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		1e-21
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		2e-15
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		1e-21
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		2e-15
4ae9_A	343	Structure And Function Of The Human Sperm-specific		1e-21
4ae9_A	343	Structure And Function Of The Human Sperm-specific		2e-15
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		1e-21
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		2e-15
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		1e-21
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		3e-15
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		3e-21
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		2e-15
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		3e-21
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		1e-16
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		3e-21
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		1e-17
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		3e-21
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		3e-15
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		3e-21
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		3e-15
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		5e-21
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		1e-16
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		5e-21
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		1e-16
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		5e-21
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		1e-17
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		5e-21
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		2e-17
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		5e-21
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		1e-17
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		5e-21
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		1e-16
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		7e-21
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		2e-15
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		8e-21
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		2e-15
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		8e-21
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		1e-14
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		8e-21
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		1e-14
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		9e-21
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		3e-14
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		9e-21
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		2e-15
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		9e-21
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		1e-14
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		9e-21
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		1e-14
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		9e-21
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		2e-15
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		9e-21
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		2e-15
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		1e-20
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		4e-15
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		1e-20
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		2e-15
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		1e-20
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		2e-15
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		1e-20
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		3e-15
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		1e-20
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		2e-15
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		2e-20
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		2e-15
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		2e-20
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		2e-15
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		3e-20
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		2e-15
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		4e-20
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		2e-15
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		4e-20
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		2e-15
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		4e-20
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		2e-15
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		6e-20
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		1e-18
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		7e-20
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		2e-18
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		8e-20
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		2e-18
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		9e-20
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		1e-18
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		3e-19
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		2e-14
2esm_A	415	Crystal Structure Of Rock 1 Bound To Fasudil Length		3e-19
2esm_A	415	Crystal Structure Of Rock 1 Bound To Fasudil Length		5e-16
3v8s_A	410	Human Rho-Associated Protein Kinase 1 (Rock 1) In C		3e-19
3v8s_A	410	Human Rho-Associated Protein Kinase 1 (Rock 1) In C		5e-16
2v55_A	406	Mechanism Of Multi-site Phosphorylation From A Rock		4e-19
2v55_A	406	Mechanism Of Multi-site Phosphorylation From A Rock		5e-16
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		5e-19
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		5e-08
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		6e-19
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		1e-14
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		6e-19
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		5e-17
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		2e-18
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		2e-18
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		7e-18
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		2e-16
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		9e-18
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		1e-17
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		4e-17
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		6e-17
2f2u_A	402	Crystal Structure Of The Rho-Kinase Kinase Domain L		1e-16
2f2u_A	402	Crystal Structure Of The Rho-Kinase Kinase Domain L		2e-16
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		2e-16
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		2e-15
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		2e-16
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		2e-15
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		3e-14
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		3e-14
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		3e-14
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		3e-14
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		4e-14
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		4e-14
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		4e-14
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		5e-14
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		5e-14
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		8e-14
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		4e-13
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		4e-13
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		7e-13
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		3e-10
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		7e-13
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		6e-11
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		8e-13
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		1e-10
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		1e-12
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		1e-10
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		1e-12
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		3e-07
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		1e-12
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		5e-06
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		1e-12
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		1e-10
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		1e-12
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		6e-06
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		1e-12
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		3e-10
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		2e-12
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		1e-10
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		2e-12
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		2e-10
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		2e-12
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		2e-04
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		2e-12
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		1e-04
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		2e-12
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		2e-10
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-12
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-04
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		2e-12
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		1e-10
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		2e-12
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		2e-10
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-12
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-04
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		2e-12
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		2e-10
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		2e-12
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		2e-10
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		2e-12
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		4e-10
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		3e-12
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		2e-10
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		3e-12
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		4e-10
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		3e-12
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		2e-10
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		3e-12
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		2e-10
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		3e-12
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		2e-10
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		3e-12
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		3e-12
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		2e-10
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		4e-12
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		4e-10
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		4e-12
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		1e-05
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		4e-12
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-04
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		4e-12
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		2e-04
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		4e-12
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		2e-10
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		4e-12
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		2e-10
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		4e-12
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		3e-10
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		5e-12
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		3e-10
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		5e-12
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		2e-10
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		5e-12
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		1e-10
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		6e-12
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		6e-12
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		3e-10
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		7e-12
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		2e-09
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		7e-12
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		2e-10
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		8e-12
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		6e-10
3udb_A	317	Crystal Structure Of Snrk2.6 Length = 317		8e-12
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		1e-11
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		1e-11
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		1e-11
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-11
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-04
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		1e-11
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		5e-10
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		1e-11
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		2e-11
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		2e-11
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		3e-09
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		2e-11
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		2e-11
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		2e-11
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		2e-11
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		2e-11
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		2e-11
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		2e-11
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		2e-11
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		2e-11
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		2e-11
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		2e-11
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		2e-11
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		3e-11
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		4e-11
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		4e-11
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		5e-10
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		5e-11
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		5e-11
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		5e-10
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		5e-11
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		6e-11
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		7e-11
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		1e-10
3zut_A	362	The Structure Of Ost1 (D160a) Kinase Length = 362		1e-10
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		2e-10
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		2e-10
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		2e-10
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		3e-07
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		3e-10
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		3e-10
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		2e-07
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		3e-10
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		2e-07
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		4e-10
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		2e-07
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		4e-10
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		4e-10
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		4e-10
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		4e-10
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		4e-10
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		5e-10
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		5e-10
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		7e-10
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		7e-10
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		7e-10
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		8e-10
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		9e-10
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		1e-05
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		1e-09
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		1e-05
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		1e-09
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		1e-09
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		3e-05
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		1e-09
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		7e-07
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		1e-09
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		2e-05
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		1e-09
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		2e-07
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		1e-09
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		4e-07
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		1e-09
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		1e-09
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		1e-09
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		1e-05
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		1e-09
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		2e-05
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		2e-09
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		2e-09
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		2e-09
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		2e-05
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		2e-09
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		7e-07
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-09
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		7e-07
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		3e-09
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		9e-07
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		5e-09
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		5e-09
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		5e-09
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		8e-04
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		6e-09
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		2e-06
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		9e-09
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		1e-07
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		1e-08
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		1e-08
3uc3_A	361	The Crystal Structure Of Snf1-Related Kinase 2.3 Le		2e-08
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		2e-08
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		2e-05
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		2e-08
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		3e-08
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		3e-08
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		3e-08
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		3e-08
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		3e-08
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		4e-08
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		4e-08
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		4e-08
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		4e-08
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		4e-08
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		4e-08
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		5e-08
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		2e-07
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		5e-08
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		2e-05
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		6e-08
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		6e-08
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		4e-05
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		7e-08
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		4e-05
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		7e-08
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		7e-08
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		3e-05
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		7e-08
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		7e-08
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		7e-08
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		8e-08
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		7e-08
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		7e-08
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		7e-08
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		3e-05
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		8e-08
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		8e-08
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		4e-05
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		8e-08
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		8e-08
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		8e-08
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		2e-06
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		8e-08
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		9e-08
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		9e-08
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		1e-07
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		1e-07
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		1e-07
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		1e-07
2ac3_A	316	Structure Of Human Mnk2 Kinase Domain Length = 316		1e-07
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		1e-07
2ac5_A	316	Structure Of Human Mnk2 Kinase Domain Mutant D228g		1e-07
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		1e-07
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		3e-06
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		1e-07
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		2e-07
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		2e-07
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		2e-07
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		5e-05
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-07
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		2e-07
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		2e-07
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		3e-07
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		5e-05
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		4e-07
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		5e-07
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		5e-07
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		5e-07
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		8e-06
1tki_A	321	Autoinhibited Serine Kinase Domain Of The Giant Mus		5e-07
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		7e-07
4euu_A	319	Structure Of Bx-795 Complexed With Human Tbk1 Kinas		7e-07
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		8e-07
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		7e-04
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		1e-06
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		5e-05
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		1e-06
4eut_A	396	Structure Of Bx-795 Complexed With Unphosphorylated		1e-06
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		1e-06
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		1e-06
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		1e-05
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-06
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		2e-06
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		8e-04
3kk9_A	282	Camkii Substrate Complex B Length = 282		2e-06
3kk9_A	282	Camkii Substrate Complex B Length = 282		7e-04
3kk8_A	284	Camkii Substrate Complex A Length = 284		2e-06
3kk8_A	284	Camkii Substrate Complex A Length = 284		7e-04
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		2e-06
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		2e-06
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		2e-06
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		2e-05
3hmn_A	342	Crystal Structure Of Human Mps1 Catalytic Domain In		3e-06
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		4e-06
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		4e-06
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		5e-06
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		2e-05
2zmc_A	390	Crystal Structure Of Human Mitotic Checkpoint Kinas		5e-06
2x9e_A	317	Human Mps1 In Complex With Nms-P715 Length = 317		5e-06
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		5e-06
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		5e-06
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		6e-06
3a7f_A	303	Human Mst3 Kinase Length = 303		6e-06
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		7e-06
3vqu_A	320	Crystal Structure Of Human Mps1 Catalytic Domain In		7e-06
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		7e-06
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		1e-04
3dbq_A	343	Crystal Structure Of Ttk Kinase Domain Length = 343		7e-06
3cek_A	313	Crystal Structure Of Human Dual Specificity Protein		7e-06
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		8e-06
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		9e-06
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		9e-06
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		1e-05
3h9f_A	313	Crystal Structure Of Human Dual Specificity Protein		1e-05
3soa_A	444	Full-Length Human Camkii Length = 444		1e-05
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		2e-05
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		2e-05
2zmd_A	390	Crystal Structure Of Human Mps1 Catalytic Domain T6		2e-05
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		2e-05
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		2e-05
1kwp_A	400	Crystal Structure Of Mapkap2 Length = 400		3e-05
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		3e-05
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		7e-04
2onl_C	406	Crystal Structure Of The P38a-Mapkap Kinase 2 Heter		3e-05
3ka0_A	320	Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4		3e-05
3r2b_A	318	Mk2 Kinase Bound To Compound 5b Length = 318		3e-05
2oza_A	356	Structure Of P38alpha Complex Length = 356		3e-05
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		3e-05
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		3e-05
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		8e-05
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		3e-05
3fhr_A	336	High Resolution Crystal Structure Of Mitogen-Activa		3e-05
3r2y_A	319	Mk2 Kinase Bound To Compound 1 Length = 319		3e-05
2pzy_A	324	Structure Of Mk2 Complexed With Compound 76 Length		3e-05
2p3g_X	327	Crystal Structure Of A Pyrrolopyridine Inhibitor Bo		3e-05
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		4e-05
2jbo_A	326	Protein Kinase Mk2 In Complex With An Inhibitor (Cr		4e-05
3r1n_A	317	Mk3 Kinase Bound To Compound 5b Length = 317		4e-05
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		4e-05
3fpm_A	325	Crystal Structure Of A Squarate Inhibitor Bound To		4e-05
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		4e-05
3gok_A	334	Binding Site Mapping Of Protein Ligands Length = 33		4e-05
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		4e-05
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		4e-05
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		5e-05
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		5e-05
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		6e-05
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		6e-05
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		6e-05
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		8e-05
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		9e-05
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		9e-05
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		9e-05
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		1e-04
4fie_A	423	Full-Length Human Pak4 Length = 423		1e-04
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		1e-04
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		1e-04
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		2e-04
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		2e-04
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		2e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		2e-04
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		2e-04
1nxk_A	400	Crystal Structure Of Staurosporine Bound To Map Kap		2e-04
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		2e-04
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		2e-04
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		2e-04
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		2e-04
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		2e-04
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		3e-04
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		3e-04
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		4e-04
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		4e-04
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		4e-04
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		4e-04
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		4e-04
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		4e-04
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		4e-04
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		4e-04
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		4e-04
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		4e-04
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		5e-04
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		5e-04
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		5e-04
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		5e-04
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		5e-04
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		6e-04
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		6e-04
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		7e-04
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		8e-04
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		8e-04
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		8e-04
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		8e-04
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		8e-04
3dls_A	335	Crystal Structure Of Human Pas Kinase Bound To Adp		8e-04
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		8e-04

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 150/364 (41%), Gaps = 88/364 (24%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M+ F  LK LG G  G V L +  +T  Y+AMK++ K  + ++ ++    TE  +LQ   
Sbjct: 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSR 206
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           HPFL  L   F+T    C VMEY  GG+L  H  R+R     FSE  ARF          
Sbjct: 207 HPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERV----FSEDRARFYGAEIVSALD 262
Query: 448 XXH-MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGG 506
             H    VVYRDLK EN+++  DGHI ++DF L          +KT              
Sbjct: 263 YLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKT-------------- 308
Query: 507 SFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS 566
            FC                                      G P    PE++ +    R+
Sbjct: 309 -FC--------------------------------------GTPEYLAPEVLEDNDYGRA 329
Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           + + G                        G+ ++E++ G+ PF    +      ++ +++
Sbjct: 330 VDWWG-----------------------LGVVMYEMMCGRLPFYNQDHEKLFELILMEEI 366
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRL-GVKRGATEIKQHPFFEGVNWALI--RCSTPP 683
           RFP +      ++ L+ GLL K+P+ RL G    A EI QH FF G+ W  +  +  +PP
Sbjct: 367 RFPRTLGPE--AKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPP 424
Query: 684 EVPR 687
             P+
Sbjct: 425 FKPQ 428

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 150/364 (41%), Gaps = 88/364 (24%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M+ F  LK LG G  G V L +  +T  Y+AMK++ K  + ++ ++    TE  +LQ   
Sbjct: 150 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSR 209
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           HPFL  L   F+T    C VMEY  GG+L  H  R+R     FSE  ARF          
Sbjct: 210 HPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERV----FSEDRARFYGAEIVSALD 265
Query: 448 XXH-MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGG 506
             H    VVYRDLK EN+++  DGHI ++DF L          +KT              
Sbjct: 266 YLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKT-------------- 311
Query: 507 SFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS 566
            FC                                      G P    PE++ +    R+
Sbjct: 312 -FC--------------------------------------GTPEYLAPEVLEDNDYGRA 332
Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           + + G                        G+ ++E++ G+ PF    +      ++ +++
Sbjct: 333 VDWWG-----------------------LGVVMYEMMCGRLPFYNQDHEKLFELILMEEI 369
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRL-GVKRGATEIKQHPFFEGVNWALI--RCSTPP 683
           RFP +      ++ L+ GLL K+P+ RL G    A EI QH FF G+ W  +  +  +PP
Sbjct: 370 RFPRTLGPE--AKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPP 427
Query: 684 EVPR 687
             P+
Sbjct: 428 FKPQ 431

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 143/348 (41%), Gaps = 85/348 (24%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M+ F  LK LG G  G V L    +T  Y+AMK++ K  + ++ ++    TE  +LQ   
Sbjct: 4   MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR 63
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           HPFL  L   F+T    C VMEY  GG+L  H  R+R     F+E  ARF          
Sbjct: 64  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAEIVSALE 119
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGS 507
             H   VVYRD+K EN+++  DGHI ++DF L          +KT               
Sbjct: 120 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKT--------------- 164
Query: 508 FCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM 567
           FC                                      G P    PE++ +    R++
Sbjct: 165 FC--------------------------------------GTPEYLAPEVLEDNDYGRAV 186
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
            + G                        G+ ++E++ G+ PF    +      ++ +++R
Sbjct: 187 DWWG-----------------------LGVVMYEMMCGRLPFYNQDHERLFELILMEEIR 223
Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNW 674
           FP +   S  ++ L+ GLL K+P+ RLG     A E+ +H FF  +NW
Sbjct: 224 FPRT--LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 143/348 (41%), Gaps = 85/348 (24%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M+ F  LK LG G  G V L    +T  Y+AMK++ K  + ++ ++    TE  +LQ   
Sbjct: 7   MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR 66
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           HPFL  L   F+T    C VMEY  GG+L  H  R+R     F+E  ARF          
Sbjct: 67  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAEIVSALE 122
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGS 507
             H   VVYRD+K EN+++  DGHI ++DF L          +KT               
Sbjct: 123 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKT--------------- 167
Query: 508 FCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM 567
           FC                                      G P    PE++ +    R++
Sbjct: 168 FC--------------------------------------GTPEYLAPEVLEDNDYGRAV 189
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
            + G                        G+ ++E++ G+ PF    +      ++ +++R
Sbjct: 190 DWWG-----------------------LGVVMYEMMCGRLPFYNQDHERLFELILMEEIR 226
Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNW 674
           FP +   S  ++ L+ GLL K+P+ RLG     A E+ +H FF  +NW
Sbjct: 227 FPRT--LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 272

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score =  120 bits (300), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 143/348 (41%), Gaps = 85/348 (24%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M+ F  LK LG G  G V L    +T  Y+AMK++ K  + ++ ++    TE  +LQ   
Sbjct: 4   MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR 63
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           HPFL  L   F+T    C VMEY  GG+L  H  R+R     F+E  ARF          
Sbjct: 64  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAEIVSALE 119
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGS 507
             H   VVYRD+K EN+++  DGHI ++DF L          +KT               
Sbjct: 120 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKT--------------- 164
Query: 508 FCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM 567
           FC                                      G P    PE++ +    R++
Sbjct: 165 FC--------------------------------------GTPEYLAPEVLEDNDYGRAV 186
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
            + G                        G+ ++E++ G+ PF    +      ++ +++R
Sbjct: 187 DWWG-----------------------LGVVMYEMMCGRLPFYNQDHERLFELILMEEIR 223
Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNW 674
           FP +   S  ++ L+ GLL K+P+ RLG     A E+ +H FF  +NW
Sbjct: 224 FPRT--LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 149/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 35  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 93
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 94  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 151
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++    SF   
Sbjct: 152 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANSF--- 195
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 196 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 216
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 217 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 256
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 257 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 311

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 149/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 32  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 90
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 91  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 148
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++    +F   
Sbjct: 149 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANAF--- 192
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 193 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 213
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 214 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 253
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 254 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 308

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 149/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 31  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 89
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 90  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 147
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++    SF   
Sbjct: 148 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANSF--- 191
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 192 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 212
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 213 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 252
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 253 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 307

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 34  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 92
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 150
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 151 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 194
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 195 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 215
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 216 -------------------DLWALGCIIYQLVAGLPPFR-AGNEGLIFAKIIKLEYDFPE 255
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 256 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 310

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 34  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 92
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 150
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 151 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 194
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 195 -----------------------------------VGTAQYVSPELLTEKSAXKSS---- 215
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 216 -------------------DLWALGCIIYQLVAGLPPFR-AGNEGLIFAKIIKLEYDFPE 255
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 256 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 310

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 150/357 (42%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 37  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 95
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 96  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 153
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 154 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 197
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 198 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 218
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS 631
                              D W  G  +++L+ G  PF+ +GN   +F  +  +L + D 
Sbjct: 219 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKI-IKLEY-DF 256
Query: 632 PATSY-ASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
           PA  +  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 257 PAAFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 313

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 149/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 34  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 92
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G L  L+  +    F E   RF            H 
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNGCL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 150
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++    SF   
Sbjct: 151 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANSF--- 194
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A++S     
Sbjct: 195 -----------------------------------VGTAQYVSPELLTEKSASKSS---- 215
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 216 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 255
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 256 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 310

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 34  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 92
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 150
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 151 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 194
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 195 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 215
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 216 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 255
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 256 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 310

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 32  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 90
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 91  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 148
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 149 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 192
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 193 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 213
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 214 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 253
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 254 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 308

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 35  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 93
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 94  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 151
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 152 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 195
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 196 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 216
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 217 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 256
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 257 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 311

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 34  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 92
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 150
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 151 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 194
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 195 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 215
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 216 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 255
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 256 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 310

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 32  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 90
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 91  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 148
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 149 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 192
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 193 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 213
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 214 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 253
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 254 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 308

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 34  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 92
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 150
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 151 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 194
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 195 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 215
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 216 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 255
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 256 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 310

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 16  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 74
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 75  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 132
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 133 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 176
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 177 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 197
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 198 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 237
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 238 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 292

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 9   FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 67
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 68  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 125
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 126 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 169
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 170 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 190
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 191 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 230
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 231 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 285

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 39  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 97
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 98  FFVKLYFCFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 155
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 156 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 199
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 200 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 220
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 221 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 260
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 261 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 315

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 10  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 68
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 69  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 126
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 127 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 170
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 171 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 191
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 192 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 231
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 232 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 286

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 31  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 89
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 90  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 147
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 148 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 191
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 192 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 212
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 213 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 252
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 253 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 307

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 12  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 70
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 71  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 128
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 129 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 172
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 173 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 193
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 194 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 233
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 234 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 288

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 147/356 (41%), Gaps = 84/356 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +V L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 11  FKFGKILGEGSFSTVVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 69
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 70  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 127
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 128 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 171
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 172 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 192
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 193 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 232
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPE 684
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP+
Sbjct: 233 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPK 286

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 147/357 (41%), Gaps = 84/357 (23%)
Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           F+  K LG G   +  L+ EL+++R Y A+K+++K  +    K+     ER+++  LDHP
Sbjct: 32  FKFGKILGEGSFSTTVLARELATSREY-AIKILEKRHIIKENKVPYVTRERDVMSRLDHP 90
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           F   LY  F+ D      + Y   G+L  L+  +    F E   RF            H 
Sbjct: 91  FFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALEYLHG 148
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+++RDLKPEN+L+ +D HI ++DF              T+ + S  S++     F   
Sbjct: 149 KGIIHRDLKPENILLNEDMHIQITDFG-------------TAKVLSPESKQARANXF--- 192
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                                              +G      PEL+ E +A +S     
Sbjct: 193 -----------------------------------VGTAQYVSPELLTEKSACKSS---- 213
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPD 630
                              D W  G  +++L+ G  PF+ +GN   +F  ++  +  FP+
Sbjct: 214 -------------------DLWALGCIIYQLVAGLPPFR-AGNEYLIFQKIIKLEYDFPE 253
Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALIRCSTPPEV 685
                  +RDL+  LLV +   RLG +   G   +K HPFFE V W  +   TPP++
Sbjct: 254 KFFPK--ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL 308

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 331 SHFRLLKRLGCGDIGSVYLSEL---SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           S F LLK LG G  G V+L +    S  R  +AMKV+ KA+L  R ++ R + ER+IL  
Sbjct: 25  SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRV-RTKMERDILVE 83
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           ++HPF+  L+  F+T+    L++++  GGDL T   ++    F+E   +F          
Sbjct: 84  VNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALD 141
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H LG++YRDLKPEN+L+ ++GHI L+DF LS
Sbjct: 142 HLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 174

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           ++ SF GT EY+APE++   GH  + DWW+FG+ + E+L G  PF+G   + T+  ++  
Sbjct: 183 KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKA 242
Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCST 681
           +L  P     S  ++ L+R L  + P +RLG    G  EIK+H FF  ++W  +  R   
Sbjct: 243 KLGMPQ--FLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRREIH 300
Query: 682 PPEVP 686
           PP  P
Sbjct: 301 PPFKP 305

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 331 SHFRLLKRLGCGDIGSVYLSEL---SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           S F LLK LG G  G V+L +    S  R  +AMKV+ KA+L  R ++ R + ER+IL  
Sbjct: 24  SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRV-RTKMERDILVE 82
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           ++HPF+  L+  F+T+    L++++  GGDL T   ++    F+E   +F          
Sbjct: 83  VNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALD 140
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H LG++YRDLKPEN+L+ ++GHI L+DF LS
Sbjct: 141 HLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 173

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           ++ SF GT EY+APE++   GH  + DWW+FG+ + E+L G  PF+G   + T+  ++  
Sbjct: 182 KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKA 241
Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCST 681
           +L  P     S  ++ L+R L  + P +RLG    G  EIK+H FF  ++W  +  R   
Sbjct: 242 KLGMPQ--FLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRREIH 299
Query: 682 PPEVP 686
           PP  P
Sbjct: 300 PPFKP 304

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score =  109 bits (272), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 331 SHFRLLKRLGCGDIGSVYLSEL---SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           S F LLK LG G  G V+L +    S  R  +AMKV+ KA+L  R ++ R + ER+IL  
Sbjct: 24  SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRV-RTKMERDILVE 82
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           ++HPF+  L+  F+T+    L++++  GGDL T   ++    F+E   +F          
Sbjct: 83  VNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALD 140
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H LG++YRDLKPEN+L+ ++GHI L+DF LS
Sbjct: 141 HLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 173

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           ++ SF GT EY+APE++   GH  + DWW+FG+ + E+L G  PF+G   + T+  ++  
Sbjct: 182 KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKA 241
Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCST 681
           +L  P     S  ++ L+R L  + P +RLG    G  EIK+H FF  ++W  +  R   
Sbjct: 242 KLGMPQ--FLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRREIH 299
Query: 682 PPEVP 686
           PP  P
Sbjct: 300 PPFKP 304

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 91/154 (59%), Gaps = 8/154 (5%)
Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTR----CYFAMKVMDKASLASRKKLTRAQTEREILQ 386
           SHF LLK LG G  G V+L     TR      +AMKV+ KA+L  R ++ R + ER+IL 
Sbjct: 28  SHFELLKVLGQGSFGKVFLVR-KVTRPDSGHLYAMKVLKKATLKVRDRV-RTKMERDILA 85
Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXX 446
            ++HPF+  L+  F+T+    L++++  GGDL T   ++    F+E   +F         
Sbjct: 86  DVNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALGL 143
Query: 447 XXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              H LG++YRDLKPEN+L+ ++GHI L+DF LS
Sbjct: 144 DHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 177

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 5/125 (4%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           ++ SF GT EY+APE++  +GH  + DWW++G+ + E+L G  PF+G   + T+  ++  
Sbjct: 186 KAYSFCGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTGSLPFQGKDRKETMTLILKA 245
Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCST 681
           +L  P   +T   ++ L+R L  + P +RLG    GA EIK+H F+  ++W  +  R   
Sbjct: 246 KLGMPQFLSTE--AQSLLRALFKRNPANRLGSGPDGAEEIKRHVFYSTIDWNKLYRREIK 303
Query: 682 PPEVP 686
           PP  P
Sbjct: 304 PPFKP 308

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  +FAMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEYSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  +FAMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEYSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  +FAMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEYSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 148/361 (40%), Gaps = 87/361 (24%)
Query: 333 FRLLKRLGCGDIGSVYLSEL---SSTRCYFAMKVMDKASLASRKKLT-RAQTEREILQLL 388
           F LL+ LG G  G V+       ++T   FAMKV+ KA +    K T   + ER IL+ +
Sbjct: 19  FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV 78
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HPF+              L+  +  GG L+ + +   G                     
Sbjct: 79  KHPFIVD------------LIYAFQTGGKLYLILEYLSG--------------------- 105
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSF 508
               G ++  L+ E + + D     L++  ++L       +I                  
Sbjct: 106 ----GELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRD--------------- 146
Query: 509 CVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS 568
                 ++P ++ +           Q + K T     + GL   ++ +         + +
Sbjct: 147 ------LKPENIMLNH---------QGHVKLT-----DFGLCKESIHD------GTVTHT 180
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT EY+APEI+   GH  AVDWW+ G  ++++L G  PF G   + T+  ++  +L  
Sbjct: 181 FCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNL 240
Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRG-ATEIKQHPFFEGVNWA--LIRCSTPPEV 685
           P  P  +  +RDL++ LL +    RLG   G A E++ HPFF  +NW   L R   PP  
Sbjct: 241 P--PYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFK 298
Query: 686 P 686
           P
Sbjct: 299 P 299

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 61  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 120
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 121 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 178
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 179 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 212

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 209 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 268
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 269 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 326
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 327 YQRKVEAPFIPK 338

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 158
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 192

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +I  H +F   +W  I
Sbjct: 249 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIXNHKWFATTDWIAI 306
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 158
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 192

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 249 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKEIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYAPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+++   G+I ++DF L+ R 
Sbjct: 158 HSLDLIYRDLKPENLMIDQQGYIQVTDFGLAKRV 191

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
           +A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF        
Sbjct: 187 LAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 246
Query: 618 LFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWAL 676
              +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  
Sbjct: 247 YEKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIA 304
Query: 677 I--RCSTPPEVPR 687
           I  R    P +P+
Sbjct: 305 IYQRKVEAPFIPK 317

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 158
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 192

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 249 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 147/361 (40%), Gaps = 87/361 (24%)
Query: 333 FRLLKRLGCGDIGSVYLSEL---SSTRCYFAMKVMDKASLASRKKLT-RAQTEREILQLL 388
           F LL+ LG G  G V+       ++T   FAMKV+ KA +    K T   + ER IL+ +
Sbjct: 19  FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV 78
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HPF+              L+  +  GG L+ + +   G                     
Sbjct: 79  KHPFIVD------------LIYAFQTGGKLYLILEYLSG--------------------- 105
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSF 508
               G ++  L+ E + + D     L++  ++L       +I                  
Sbjct: 106 ----GELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRD--------------- 146
Query: 509 CVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS 568
                 ++P ++ +           Q + K T     + GL   ++ +         +  
Sbjct: 147 ------LKPENIMLNH---------QGHVKLT-----DFGLCKESIHD------GTVTHX 180
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT EY+APEI+   GH  AVDWW+ G  ++++L G  PF G   + T+  ++  +L  
Sbjct: 181 FCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNL 240
Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRG-ATEIKQHPFFEGVNWA--LIRCSTPPEV 685
           P  P  +  +RDL++ LL +    RLG   G A E++ HPFF  +NW   L R   PP  
Sbjct: 241 P--PYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFK 298
Query: 686 P 686
           P
Sbjct: 299 P 299

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 158
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 192

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+ +  GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 189 AKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 249 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 33  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 92
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 93  FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 150
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 151 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 184

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 181 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 240
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 241 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 298
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 299 YQRKVEAPFIPK 310

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 158
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 192

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 249 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K +G G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGGD+ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYMPGGDMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIKVADFGFAKRV 191

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K +G G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGGD+ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYMPGGDMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIKVADFGFAKRV 191

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKEIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYAPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+++   G+I ++DF L+ R 
Sbjct: 158 HSLDLIYRDLKPENLMIDQQGYIKVTDFGLAKRV 191

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
           +A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF        
Sbjct: 187 LAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 246
Query: 618 LFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWAL 676
              +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  
Sbjct: 247 YEKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIA 304
Query: 677 I--RCSTPPEVPR 687
           I  R    P +P+
Sbjct: 305 IYQRKVEAPFIPK 317

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYAPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 158
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+++   G+I ++DF  + R 
Sbjct: 159 HSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRV 192

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 249 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 26  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 85
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 86  FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 143
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 144 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 177

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+ +  GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 174 AKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 233
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 234 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAI 291
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 292 YQRKVEAPFIPK 303

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYAPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+++   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLMIDQQGYIQVTDFGFAKRV 191

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 101 FPFLTKLEFSFKDNSNLYMVMEYAPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 158
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+++   G+I ++DF  + R 
Sbjct: 159 HSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRV 192

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 249 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score =  102 bits (254), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 101 FPFLTKLEFSFKDNSNLYMVMEYAPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 158
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+++   G+I ++DF  + R 
Sbjct: 159 HSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRV 192

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 249 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 9/167 (5%)
Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSS---TRCYFAMKVMDKASLASRKKLT-RAQTERE 383
           +G+ +F LLK LG G  G V+L    S   T   +AMKV+ KA++  + K T   +TER+
Sbjct: 51  VGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQ 110
Query: 384 ILQLLDH-PFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFXXXX 441
           +L+ +   PFL TL+  F+T+    L+++Y  GG+L T L QR+    F+E+  +     
Sbjct: 111 VLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRE---RFTEHEVQIYVGE 167
Query: 442 XXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT 488
                   H LG++YRD+K EN+L+  +GH++L+DF LS       T
Sbjct: 168 IVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADET 214

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 82/139 (58%), Gaps = 6/139 (4%)
Query: 556 ELVAEPTAARSMSFVGTHEYLAPEIIKG--EGHGSAVDWWTFGIFLHELLYGKTPFKGSG 613
           E VA+ T  R+  F GT EY+AP+I++G   GH  AVDWW+ G+ ++ELL G +PF   G
Sbjct: 208 EFVADETE-RAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDG 266
Query: 614 NRATLFNVVGQQLRF--PDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFE 670
            + +   +  + L+   P     S  ++DLI+ LL+K+P+ RLG   R A EIK+H FF+
Sbjct: 267 EKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQ 326
Query: 671 GVNWALIRCSTPPEVPRPM 689
            +NW  +     P   +P+
Sbjct: 327 KINWDDLAAKKVPAPFKPV 345

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYAPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+++   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRV 191

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K +G G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIKVADFGFAKRV 191

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ F E  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FXEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 33  LDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 92
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ F E  ARF            
Sbjct: 93  FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FXEPHARFYAAQIVLTFEYL 150
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 151 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 184

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 181 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 240
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 241 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 298
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 299 YQRKVEAPFIPK 310

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ F E  ARF            
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FXEPHARFYAAQIVLTFEYL 158
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 192

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 249 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ F E  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS-HLRRIGR-FXEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 41  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ F E  ARF            
Sbjct: 101 FPFLTKLEFSFKDNSNLYMVMEYAPGGEMFS-HLRRIGR-FXEPHARFYAAQIVLTFEYL 158
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+++   G+I ++DF  + R 
Sbjct: 159 HSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRV 192

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 249 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 323 ARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTER 382
           A D  + M+ F  LK LG G  G V L    +T  Y+AMK++ K  + ++ ++    TE 
Sbjct: 2   AMDPKVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTES 61
Query: 383 EILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFXXX 440
            +LQ   HPFL  L   F+T    C VMEY  GG+L  H  R+R     F+E  ARF   
Sbjct: 62  RVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGA 117
Query: 441 XXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
                    H   VVYRD+K EN+++  DGHI ++DF L
Sbjct: 118 EIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 156

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT EYLAPE+++   +G AVDWW  G+ ++E++ G+ PF    +      ++ +++RF
Sbjct: 170 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRF 229
Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNW 674
           P +   S  ++ L+ GLL K+P+ RLG     A E+ +H FF  +NW
Sbjct: 230 PRT--LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 274

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Query: 323 ARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTER 382
           A D  + M+ F  LK LG G  G V L +  +T  Y+AMK++ K  + ++ ++    TE 
Sbjct: 2   AMDPRVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTEN 61
Query: 383 EILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFXXX 440
            +LQ   HPFL  L   F+T    C VMEY  GG+L  H  R+R     FSE  ARF   
Sbjct: 62  RVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERV----FSEDRARFYGA 117
Query: 441 XXXXXXXXXH-MLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
                    H    VVYRDLK EN+++  DGHI ++DF L
Sbjct: 118 EIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGL 157

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT EYLAPE+++   +G AVDWW  G+ ++E++ G+ PF    +      ++ +++RF
Sbjct: 171 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRF 230
Query: 629 PDSPATSYASRDLIRGLLVKEPQHRL-GVKRGATEIKQHPFFEGVNWALI--RCSTPPEV 685
           P +      ++ L+ GLL K+P+ RL G    A EI QH FF G+ W  +  +  +PP  
Sbjct: 231 PRTLGPE--AKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPFK 288
Query: 686 PR 687
           P+
Sbjct: 289 PQ 290

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   T  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY PGG++ +   R+ G+ F E  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYAPGGEMFS-HLRRIGR-FXEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+++   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRV 191

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M+ F  LK LG G  G V L    +T  Y+AMK++ K  + ++ ++    TE  +LQ   
Sbjct: 4   MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR 63
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           HPFL  L   F+T    C VMEY  GG+L  H  R+R     F+E  ARF          
Sbjct: 64  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAEIVSALE 119
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
             H   VVYRD+K EN+++  DGHI ++DF L
Sbjct: 120 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 151

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT EYLAPE+++   +G AVDWW  G+ ++E++ G+ PF    +      ++ +++RF
Sbjct: 165 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRF 224
Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNW 674
           P +   S  ++ L+ GLL K+P+ RLG     A E+ +H FF  +NW
Sbjct: 225 PRT--LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M+ F  LK LG G  G V L    +T  Y+AMK++ K  + ++ ++    TE  +LQ   
Sbjct: 4   MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR 63
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           HPFL  L   F+T    C VMEY  GG+L  H  R+R     F+E  ARF          
Sbjct: 64  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAEIVSALE 119
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
             H   VVYRD+K EN+++  DGHI ++DF L
Sbjct: 120 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 151

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT EYLAPE+++   +G AVDWW  G+ ++E++ G+ PF    +      ++ +++RF
Sbjct: 165 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRF 224
Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNW 674
           P +   S  ++ L+ GLL K+P+ RLG     A E+ +H FF  +NW
Sbjct: 225 PRT--LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M+ F  LK LG G  G V L +  +T  Y+AMK++ K  + ++ ++    TE  +LQ   
Sbjct: 7   MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSR 66
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           HPFL  L   F+T    C VMEY  GG+L  H  R+R     FSE  ARF          
Sbjct: 67  HPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERV----FSEDRARFYGAEIVSALD 122
Query: 448 XXH-MLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
             H    VVYRDLK EN+++  DGHI ++DF L
Sbjct: 123 YLHSEKNVVYRDLKLENLMLDKDGHIKITDFGL 155

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT EYLAPE+++   +G AVDWW  G+ ++E++ G+ PF    +      ++ +++RF
Sbjct: 169 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRF 228
Query: 629 PDSPATSYASRDLIRGLLVKEPQHRL-GVKRGATEIKQHPFFEGVNWALI--RCSTPPEV 685
           P +      ++ L+ GLL K+P+ RL G    A EI QH FF G+ W  +  +  +PP  
Sbjct: 229 PRTLGPE--AKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPFK 286
Query: 686 PR 687
           P+
Sbjct: 287 PQ 288

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLD 389
           S F  LK +G G  G V L+   +   ++A+KV+ K ++  +K+     +ER +L + + 
Sbjct: 38  SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVK 97
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
           HPFL  L+  F+T      V++Y  GG+L    QR+  + F E  ARF            
Sbjct: 98  HPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYL 155
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFC 509
           H L +VYRDLKPEN+L+   GHI+L+DF L   C  +     T+S            +FC
Sbjct: 156 HSLNIVYRDLKPENILLDSQGHIVLTDFGL---CKENIEHNSTTS------------TFC 200
Query: 510 VQPACIEPSSVCIQP 524
             P  + P  +  QP
Sbjct: 201 GTPEYLAPEVLHKQP 215

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVGQQL 626
           +F GT EYLAPE++  + +   VDWW  G  L+E+LYG  PF  S N A ++ N++ + L
Sbjct: 198 TFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFY-SRNTAEMYDNILNKPL 256
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW--ALIRCSTPPE 684
           +    P  + ++R L+ GLL K+   RLG K    EIK H FF  +NW   + +  TPP 
Sbjct: 257 QL--KPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKITPPF 314
Query: 685 VP 686
            P
Sbjct: 315 NP 316

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M+ F  LK LG G  G V L +  +T  Y+AMK++ K  + ++ ++    TE  +LQ   
Sbjct: 8   MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSR 67
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           HPFL  L   F+T    C VMEY  GG+L  H  R+R     FSE  ARF          
Sbjct: 68  HPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERV----FSEDRARFYGAEIVSALD 123
Query: 448 XXH-MLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
             H    VVYRDLK EN+++  DGHI ++DF L
Sbjct: 124 YLHSEKNVVYRDLKLENLMLDKDGHIKITDFGL 156

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT EYLAPE+++   +G AVDWW  G+ ++E++ G+ PF    +      ++ +++RF
Sbjct: 170 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRF 229
Query: 629 PDSPATSYASRDLIRGLLVKEPQHRL-GVKRGATEIKQHPFFEGVNWALI--RCSTPPEV 685
           P +      ++ L+ GLL K+P+ RL G    A EI QH FF G+ W  +  +  +PP  
Sbjct: 230 PRTLGPE--AKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPFK 287
Query: 686 PR 687
           P+
Sbjct: 288 PQ 289

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M+ F  LK LG G  G V L    +T  Y+AMK++ K  + ++ ++    TE  +LQ   
Sbjct: 4   MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR 63
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           HPFL  L   F+T    C VMEY  GG+L  H  R+R     F+E  ARF          
Sbjct: 64  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAEIVSALE 119
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
             H   VVYRD+K EN+++  DGHI ++DF L
Sbjct: 120 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 151

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT EYLAPE+++   +G AVDWW  G+ ++E++ G+ PF    +      ++ +++RF
Sbjct: 165 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRF 224
Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNW 674
           P +   S  ++ L+ GLL K+P+ RLG     A E+ +H FF  +NW
Sbjct: 225 PRT--LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 99.4 bits (246), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLAGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLXGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 61  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 120
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 121 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 178
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 179 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 212

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+     + +  GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 209 AKRVKGATWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 268
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 269 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 326
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 327 YQRKVEAPFIPK 338

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +  G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLPNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT E LAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 27  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 86
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 87  FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 144
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+ + G+I ++DF  + R 
Sbjct: 145 HSLDLIYRDLKPENLLIDEQGYIQVTDFGFAKRV 178

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 175 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 234
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 235 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 292
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 293 YQRKVEAPFIPK 304

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +     G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKAFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAP II  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPAIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADEPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++++  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYQMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 41  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 100
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 158
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 192

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 249 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  ++ LG G  G V L +   T  ++AMK++DK  +   K++     E+ I Q ++
Sbjct: 41  LDQFERIRTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRIQQAVN 100
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +V+EY PGG++ +   R+ G+ FSE  ARF            
Sbjct: 101 FPFLVKLEFSFKDNSNLYMVLEYAPGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 158
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 159 HSLDLIYRDLKPENLLIDQQGYIKVADFGFAKRV 192

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 249 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ FSE  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FSEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+++   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLIIDQQGYIQVTDFGFAKRV 191

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIIISKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ F+E  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FAEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 61  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 120
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ F E  ARF            
Sbjct: 121 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FXEPHARFYAAQIVLTFEYL 178
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 179 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 212

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 209 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 268
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 269 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 326
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 327 YQRKVEAPFIPK 338

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ F E  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FXEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ F E  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FXEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 40  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 99
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ F E  ARF            
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FXEPHARFYAAQIVLTFEYL 157
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 158 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 248 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ ILQ ++
Sbjct: 35  LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 94
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
            PFL  L   F+ +    +VMEY  GG++ +   R+ G+ F E  ARF            
Sbjct: 95  FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS-HLRRIGR-FXEPHARFYAAQIVLTFEYL 152
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           H L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 153 HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 186

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A+    R+    GT EYLAPEII  +G+  AVDWW  G+ ++E+  G  PF         
Sbjct: 183 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 242
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI 677
             +V  ++RFP   ++    +DL+R LL  +   R G +K G  +IK H +F   +W  I
Sbjct: 243 EKIVSGKVRFPSHFSSDL--KDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 300
Query: 678 --RCSTPPEVPR 687
             R    P +P+
Sbjct: 301 YQRKVEAPFIPK 312

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 3/151 (1%)
Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-Q 386
           LG+  F LL+ +G G    V L  L  T   +AMKV+ K  +   + +   QTE+ +  Q
Sbjct: 17  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQ 76
Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXX 446
             +HPFL  L++ F+T+     V+EY  GGDL    QRQ  +   E  ARF         
Sbjct: 77  ASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLAL 134
Query: 447 XXXHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
              H  G++YRDLK +NVL+  +GHI L+D+
Sbjct: 135 NYLHERGIIYRDLKLDNVLLDSEGHIKLTDY 165

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 16/141 (11%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN--------RATLFN 620
           F GT  Y+APEI++GE +G +VDWW  G+ + E++ G++PF   G+           LF 
Sbjct: 181 FCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQ 240
Query: 621 VV-GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV--KRGATEIKQHPFFEGVNWALI 677
           V+  +Q+R P S +   AS  +++  L K+P+ RLG   + G  +I+ HPFF  V+W ++
Sbjct: 241 VILEKQIRIPRSMSVKAAS--VLKSFLNKDPKERLGCLPQTGFADIQGHPFFRNVDWDMM 298
Query: 678 RCSTPPEVPRPMEAELPGKFG 698
                 +V  P +  + G+FG
Sbjct: 299 E---QKQVVPPFKPNISGEFG 316

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 3/151 (1%)
Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-Q 386
           LG+  F LL+ +G G    V L  L  T   +AMKV+ K  +   + +   QTE+ +  Q
Sbjct: 2   LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQ 61
Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXX 446
             +HPFL  L++ F+T+     V+EY  GGDL    QRQ  +   E  ARF         
Sbjct: 62  ASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLAL 119
Query: 447 XXXHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
              H  G++YRDLK +NVL+  +GHI L+D+
Sbjct: 120 NYLHERGIIYRDLKLDNVLLDSEGHIKLTDY 150

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 16/141 (11%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN--------RATLFN 620
           F GT  Y+APEI++GE +G +VDWW  G+ + E++ G++PF   G+           LF 
Sbjct: 166 FCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQ 225
Query: 621 VV-GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV--KRGATEIKQHPFFEGVNWALI 677
           V+  +Q+R P S +   AS  +++  L K+P+ RLG   + G  +I+ HPFF  V+W ++
Sbjct: 226 VILEKQIRIPRSLSVKAAS--VLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMM 283
Query: 678 RCSTPPEVPRPMEAELPGKFG 698
                 +V  P +  + G+FG
Sbjct: 284 E---QKQVVPPFKPNISGEFG 301

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 95.9 bits (237), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 3/151 (1%)
Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-Q 386
           LG+  F LL+ +G G    V L  L  T   +AMKV+ K  +   + +   QTE+ +  Q
Sbjct: 6   LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQ 65
Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXX 446
             +HPFL  L++ F+T+     V+EY  GGDL    QRQ  +   E  ARF         
Sbjct: 66  ASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLAL 123
Query: 447 XXXHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
              H  G++YRDLK +NVL+  +GHI L+D+
Sbjct: 124 NYLHERGIIYRDLKLDNVLLDSEGHIKLTDY 154

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 16/141 (11%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN--------RATLFN 620
           F GT  Y+APEI++GE +G +VDWW  G+ + E++ G++PF   G+           LF 
Sbjct: 170 FCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQ 229
Query: 621 VV-GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV--KRGATEIKQHPFFEGVNWALI 677
           V+  +Q+R P S +   AS  +++  L K+P+ RLG   + G  +I+ HPFF  V+W ++
Sbjct: 230 VILEKQIRIPRSLSVKAAS--VLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMM 287
Query: 678 RCSTPPEVPRPMEAELPGKFG 698
                 +V  P +  + G+FG
Sbjct: 288 EQK---QVVPPFKPNISGEFG 305

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-Q 386
           LG+  F LL+ +G G    V L  L  T   +AM+V+ K  +   + +   QTE+ +  Q
Sbjct: 49  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQ 108
Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXX 446
             +HPFL  L++ F+T+     V+EY  GGDL    QRQ  +   E  ARF         
Sbjct: 109 ASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLAL 166
Query: 447 XXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
              H  G++YRDLK +NVL+  +GHI L+D+ +
Sbjct: 167 NYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM 199

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 16/142 (11%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN--------RATLF 619
           +F GT  Y+APEI++GE +G +VDWW  G+ + E++ G++PF   G+           LF
Sbjct: 212 TFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLF 271
Query: 620 NVV-GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV--KRGATEIKQHPFFEGVNWAL 676
            V+  +Q+R P S +   AS  +++  L K+P+ RLG   + G  +I+ HPFF  V+W +
Sbjct: 272 QVILEKQIRIPRSLSVKAAS--VLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDM 329
Query: 677 IRCSTPPEVPRPMEAELPGKFG 698
           +      +V  P +  + G+FG
Sbjct: 330 ME---QKQVVPPFKPNISGEFG 348

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 1/186 (0%)
Query: 304 ANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKV 363
           A   +  +  +W   + +R ++  L    F +LK +G G    V + ++  T   +AMK+
Sbjct: 34  AQDKYVADFLQWAEPIVVRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKI 93
Query: 364 MDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ 423
           M+K  +  R +++  + ER++L   D  ++  L+  F+ + +  LVMEY  GGDL TL  
Sbjct: 94  MNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLS 153
Query: 424 RQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           +  G+      ARF            H LG V+RD+KP+N+L+   GHI L+DF   L+ 
Sbjct: 154 KF-GERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKL 212
Query: 484 AVSPTL 489
               T+
Sbjct: 213 RADGTV 218

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSA-------VDWWTFGIFLHELLYGKTPFKGSGNRA 616
            RS+  VGT +YL+PEI++  G G          DWW  G+F +E+ YG+TPF       
Sbjct: 218 VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAE 277
Query: 617 TLFNVV--GQQLRFP-DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN 673
           T   +V   + L  P         +RD I+ LL   P+ RLG + GA + + HPFF G++
Sbjct: 278 TYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLCP-PETRLG-RGGAGDFRTHPFFFGLD 335
Query: 674 WALIRCSTPPEVP 686
           W  +R S PP  P
Sbjct: 336 WDGLRDSVPPFTP 348

>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil Length = 415

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Query: 322 RARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTE 381
           + RD  +    + ++K +G G  G V L    STR  +AMK++ K  +  R        E
Sbjct: 65  KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEE 124
Query: 382 REILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXX 441
           R+I+   + P++  L+  F+ DR+  +VMEY PGGDL  L          E  ARF    
Sbjct: 125 RDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNL---MSNYDVPEKWARFYTAE 181
Query: 442 XXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
                   H +G ++RD+KP+N+L+   GH+ L+DF
Sbjct: 182 VVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADF 217

>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil Length = 415

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query: 570 VGTHEYLAPEIIKGEG----HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
           VGT +Y++PE++K +G    +G   DWW+ G+FL+E+L G TPF       T   ++  +
Sbjct: 235 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHK 294
Query: 626 --LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL--IRCST 681
             L FPD    S  +++LI   L  + + RLG + G  EIK+H FF+   WA   +R + 
Sbjct: 295 NSLTFPDDNDISKEAKNLICAFLT-DREVRLG-RNGVEEIKRHLFFKNDQWAWETLRDTV 352
Query: 682 PPEVP 686
            P VP
Sbjct: 353 APVVP 357

>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex With Indazole Derivative (Compound 18) Length = 410

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Query: 322 RARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTE 381
           + RD  +    + ++K +G G  G V L    STR  +AMK++ K  +  R        E
Sbjct: 60  KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEE 119
Query: 382 REILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXX 441
           R+I+   + P++  L+  F+ DR+  +VMEY PGGDL  L          E  ARF    
Sbjct: 120 RDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNL---MSNYDVPEKWARFYTAE 176
Query: 442 XXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
                   H +G ++RD+KP+N+L+   GH+ L+DF
Sbjct: 177 VVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADF 212

>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex With Indazole Derivative (Compound 18) Length = 410

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query: 570 VGTHEYLAPEIIKGEG----HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
           VGT +Y++PE++K +G    +G   DWW+ G+FL+E+L G TPF       T   ++  +
Sbjct: 230 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHK 289
Query: 626 --LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL--IRCST 681
             L FPD    S  +++LI   L  + + RLG + G  EIK+H FF+   WA   +R + 
Sbjct: 290 NSLTFPDDNDISKEAKNLICAFLT-DREVRLG-RNGVEEIKRHLFFKNDQWAWETLRDTV 347
Query: 682 PPEVP 686
            P VP
Sbjct: 348 APVVP 352

>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 406

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Query: 322 RARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTE 381
           + RD  +    + ++K +G G  G V L    STR  +AMK++ K  +  R        E
Sbjct: 65  KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEE 124
Query: 382 REILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXX 441
           R+I+   + P++  L+  F+ DR+  +VMEY PGGDL  L          E  ARF    
Sbjct: 125 RDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNL---MSNYDVPEKWARFYTAE 181
Query: 442 XXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
                   H +G ++RD+KP+N+L+   GH+ L+DF
Sbjct: 182 VVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADF 217

>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 406

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query: 570 VGTHEYLAPEIIKGEG----HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
           VGT +Y++PE++K +G    +G   DWW+ G+FL+E+L G TPF       T   ++  +
Sbjct: 235 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHK 294
Query: 626 --LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL--IRCST 681
             L FPD    S  +++LI   L  + + RLG + G  EIK+H FF+   WA   +R + 
Sbjct: 295 NSLTFPDDNDISKEAKNLICAFLT-DREVRLG-RNGVEEIKRHLFFKNDQWAWETLRDTV 352
Query: 682 PPEVP 686
            P VP
Sbjct: 353 APVVP 357

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 14/192 (7%)
Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           +   HF +L+ +G G  G V + + + T+  +AMK M+K     R ++     E +I+Q 
Sbjct: 12  VNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQG 71
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L+HPFL  L+  F+ +    +V++   GGDL      Q   HF E   +           
Sbjct: 72  LEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRY--HLQQNVHFKEETVKLFICELVMALD 129
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL---------DSD 498
                 +++RD+KP+N+L+ + GH+ ++DF+++   A+ P   + +++         +  
Sbjct: 130 YLQNQRIIHRDMKPDNILLDEHGHVHITDFNIA---AMLPRETQITTMAGTKPYMAPEMF 186
Query: 499 PSRRGPGGSFCV 510
            SR+G G SF V
Sbjct: 187 SSRKGAGYSFAV 198

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 561 PTAARSMSFVGTHEYLAPEII---KGEGHGSAVDWWTFGIFLHELLYGKTPFK---GSGN 614
           P   +  +  GT  Y+APE+    KG G+  AVDWW+ G+  +ELL G+ P+     + +
Sbjct: 166 PRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSS 225
Query: 615 RATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
           +  +       + +P + +    S  L++ LL   P  R       ++++  P+   +NW
Sbjct: 226 KEIVHTFETTVVTYPSAWSQEMVS--LLKKLLEPNPDQRFS---QLSDVQNFPYMNDINW 280

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           LG+ +F  ++ LG G  G V L+ +  T   +A+KV+ K  +     +    TE+ IL L
Sbjct: 20  LGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSL 79
Query: 388 L-DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXX 446
             +HPFL  L+  F+T      VME+  GGDL  +   Q  + F E  ARF         
Sbjct: 80  ARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDL--MFHIQKSRRFDEARARFYAAEIISAL 137
Query: 447 XXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
              H  G++YRDLK +NVL+  +GH  L+DF +
Sbjct: 138 MFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGM 170

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
           + +F GT +Y+APEI++   +G AVDWW  G+ L+E+L G  PF+          ++  +
Sbjct: 181 TATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDE 240
Query: 626 LRFPDSPATSYASRD---LIRGLLVKEPQHRLG--VKRGATEIKQHPFFEGVNWALI--R 678
           + +P     ++   D   +++  + K P  RLG   + G   I +HPFF+ ++WA +  R
Sbjct: 241 VVYP-----TWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQLNHR 295
Query: 679 CSTPPEVPR 687
              PP  PR
Sbjct: 296 QIEPPFRPR 304

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 90/180 (50%), Gaps = 9/180 (5%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F++L+ LG G  G V+L        Y+AMKV+ K  +   K++     ER +L ++ 
Sbjct: 5   LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVT 64
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
           HPF+  ++  F+  +   ++M+Y  GG+L +L ++   + F    A+F            
Sbjct: 65  HPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRK--SQRFPNPVAKFYAAEVCLALEYL 122
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDF-------DLSLRCAVSPTLIKTSSLDSDPSRR 502
           H   ++YRDLKPEN+L+  +GHI ++DF       D++     +P  I    + + P  +
Sbjct: 123 HSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYXLCGTPDYIAPEVVSTKPYNK 182

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT +Y+APE++  + +  ++DWW+FGI ++E+L G TPF  S    T   ++  +LRFP 
Sbjct: 165 GTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFP- 223
Query: 631 SPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI---RCSTPPEVP 686
            P  +   +DL+  L+ ++   RLG ++ G  ++K HP+F+ V W  +      TP E P
Sbjct: 224 -PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPP 282

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
           A++  F GT +Y+APEI+ G+ +  +VDWW+FG+ L+E+L G++PF G        ++  
Sbjct: 174 AKTNEFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRM 233
Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
               +P        ++DL+  L V+EP+ RLGV RG  +I+QHP F  +NW
Sbjct: 234 DNPFYP--RWLEKEAKDLLVKLFVREPEKRLGV-RG--DIRQHPLFREINW 279

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
           A++  F GT +Y+APEI+ G+ +  +VDWW+FG+ L+E+L G++PF G        ++  
Sbjct: 173 AKTNXFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRM 232
Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
               +P        ++DL+  L V+EP+ RLGV RG  +I+QHP F  +NW
Sbjct: 233 DNPFYP--RWLEKEAKDLLVKLFVREPEKRLGV-RG--DIRQHPLFREINW 278

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 90/196 (45%), Gaps = 18/196 (9%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           ++ F  L  LG G  G V L++   T   +A+K++ K  +     +     E+ +L LLD
Sbjct: 18  LTDFNFLMVLGKGSFGKVMLADRKGTEELYAIKILKKDVVIQDDDVECTMVEKRVLALLD 77
Query: 390 HP-FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            P FL  L++ F+T      VMEY  GGDL     +Q GK F E  A F           
Sbjct: 78  KPPFLTQLHSCFQTVDRLYFVMEYVNGGDL-MYHIQQVGK-FKEPQAVFYAAEISIGLFF 135
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSF 508
            H  G++YRDLK +NV++  +GHI ++DF +           K   +D   +R      F
Sbjct: 136 LHKRGIIYRDLKLDNVMLDSEGHIKIADFGMC----------KEHMMDGVTTR-----EF 180
Query: 509 CVQPACIEPSSVCIQP 524
           C  P  I P  +  QP
Sbjct: 181 CGTPDYIAPEIIAYQP 196

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
            F GT +Y+APEII  + +G +VDWW +G+ L+E+L G+ PF G        +++   + 
Sbjct: 179 EFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVS 238
Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCSTPPE 684
           +P S +    S  + +GL+ K P  RLG    G  ++++H FF  ++W  +  R   PP 
Sbjct: 239 YPKSLSKEAVS--ICKGLMTKHPAKRLGCGPEGERDVREHAFFRRIDWEKLENREIQPPF 296
Query: 685 VPR 687
            P+
Sbjct: 297 KPK 299

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 1/168 (0%)
Query: 315 WKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKK 374
           W      + +   L    F +LK +G G  G V + +L +    FAMK+++K  +  R +
Sbjct: 58  WAKPFTSKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAE 117
Query: 375 LTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYA 434
               + ER++L   D  ++ TL+  F+ D    LVM+Y  GGDL TL  +   +   E  
Sbjct: 118 TACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDR-LPEEM 176
Query: 435 ARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
           ARF            H L  V+RD+KP+N+L+  +GHI L+DF   L+
Sbjct: 177 ARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLK 224

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 13/145 (8%)
Query: 558 VAEPTAARSMSFVGTHEYLAPEIIK----GEG-HGSAVDWWTFGIFLHELLYGKTPFKGS 612
           + E    +S   VGT +Y++PEI++    G+G +G   DWW+ G+ ++E+LYG+TPF   
Sbjct: 225 LMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAE 284
Query: 613 GNRATLFNVVGQQLRFP---DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
               T   ++  + RF         S  ++DLIR L+    +HRLG + G  + K+HPFF
Sbjct: 285 SLVETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSR-EHRLG-QNGIEDFKKHPFF 342
Query: 670 EGVNWALIR-CSTP--PEVPRPMEA 691
            G++W  IR C  P  PEV  P + 
Sbjct: 343 SGIDWDNIRNCEAPYIPEVSSPTDT 367

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT +Y+APEII  + +G +VDWW FG+ L+E+L G+ PF+G        +++   + +
Sbjct: 502 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAY 561
Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCSTPPEV 685
           P S +    +  + +GL+ K P  RLG    G  +IK+H FF  ++W  +  +   PP  
Sbjct: 562 PKSMSKEAVA--ICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYK 619
Query: 686 PR 687
           P+
Sbjct: 620 PK 621

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT +Y+APEII  + +G +VDWW FG+ L+E+L G+ PF+G        +++   + +
Sbjct: 181 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAY 240
Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCSTPPEV 685
           P S +    +  + +GL+ K P  RLG    G  +IK+H FF  ++W  +  +   PP  
Sbjct: 241 PKSMSKEAVA--ICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYK 298
Query: 686 PR 687
           P+
Sbjct: 299 PK 300

>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + ++K +G G  G V L    +++  +AMK++ K  +  R        ER+I+   + P+
Sbjct: 77  YDVVKVIGRGAFGEVQLVRHKASQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW 136
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +  L+  F+ D++  +VMEY PGGDL  L          E  A+F            H +
Sbjct: 137 VVQLFCAFQDDKYLYMVMEYMPGGDLVNL---MSNYDVPEKWAKFYTAEVVLALDAIHSM 193
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDF 477
           G+++RD+KP+N+L+   GH+ L+DF
Sbjct: 194 GLIHRDVKPDNMLLDKHGHLKLADF 218

>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query: 570 VGTHEYLAPEIIKGEG----HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
           VGT +Y++PE++K +G    +G   DWW+ G+FL E+L G TPF       T   ++  +
Sbjct: 236 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHK 295
Query: 626 --LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG--VNWALIRCST 681
             L FP+    S  +++LI   L  + + RLG + G  EIKQHPFF+    NW  IR + 
Sbjct: 296 NSLCFPEDAEISKHAKNLICAFLT-DREVRLG-RNGVEEIKQHPFFKNDQWNWDNIRETA 353
Query: 682 PPEVP 686
            P VP
Sbjct: 354 APVVP 358

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F ++K +G G  G V + ++ +T   +AMK+++K  +  R +    + ER++L   D  +
Sbjct: 92  FEIIKVIGRGAFGEVAVVKMKNTERIYAMKILNKWEMLKRAETACFREERDVLVNGDCQW 151
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +  L+  F+ +    LVM+Y  GGDL TL  +   K   E  ARF            H L
Sbjct: 152 ITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDK-LPEDMARFYIGEMVLAIDSIHQL 210
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
             V+RD+KP+NVL+  +GHI L+DF   L+
Sbjct: 211 HYVHRDIKPDNVLLDVNGHIRLADFGSCLK 240

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query: 570 VGTHEYLAPEIIK----GEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           VGT +Y++PEI++    G G +G   DWW+ G+ ++E+LYG+TPF       T   ++  
Sbjct: 253 VGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNH 312
Query: 625 QLRFP---DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCST 681
           + RF         S  ++DLI+ L+    + RLG + G  + K+H FFEG+NW  IR   
Sbjct: 313 EERFQFPSHVTDVSEEAKDLIQRLICSR-ERRLG-QNGIEDFKKHAFFEGLNWENIRNLE 370
Query: 682 PPEVP 686
            P +P
Sbjct: 371 APYIP 375

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F ++K +G G  G V + ++ +T   +AMK+++K  +  R +    + ER++L   D  +
Sbjct: 76  FEIIKVIGRGAFGEVAVVKMKNTERIYAMKILNKWEMLKRAETACFREERDVLVNGDCQW 135
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +  L+  F+ +    LVM+Y  GGDL TL  +   K   E  ARF            H L
Sbjct: 136 ITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDK-LPEDMARFYIGEMVLAIDSIHQL 194
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
             V+RD+KP+NVL+  +GHI L+DF   L+
Sbjct: 195 HYVHRDIKPDNVLLDVNGHIRLADFGSCLK 224

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query: 570 VGTHEYLAPEIIK----GEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           VGT +Y++PEI++    G G +G   DWW+ G+ ++E+LYG+TPF       T   ++  
Sbjct: 237 VGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNH 296
Query: 625 QLRFP---DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCST 681
           + RF         S  ++DLI+ L+    + RLG + G  + K+H FFEG+NW  IR   
Sbjct: 297 EERFQFPSHVTDVSEEAKDLIQRLICSR-ERRLG-QNGIEDFKKHAFFEGLNWENIRNLE 354
Query: 682 PPEVP 686
            P +P
Sbjct: 355 APYIP 359

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 15/149 (10%)
Query: 545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY 604
           S+LGL      EL A  T  ++  + GT  ++APE++ GE +  +VD++  G+ L+E++ 
Sbjct: 331 SDLGLAV----ELKAGQT--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIA 384
Query: 605 GKTPFKGSG----NRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGA 660
            + PF+  G    N+     V+ Q + +PD    S AS+D    LL K+P+ RLG + G+
Sbjct: 385 ARGPFRARGEKVENKELKQRVLEQAVTYPDK--FSPASKDFCEALLQKDPEKRLGFRDGS 442
Query: 661 TE-IKQHPFFEGVNWALIRCS--TPPEVP 686
            + ++ HP F  ++W  +     TPP VP
Sbjct: 443 CDGLRTHPLFRDISWRQLEAGMLTPPFVP 471

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 15/149 (10%)
Query: 545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY 604
           S+LGL      EL A  T  ++  + GT  ++APE++ GE +  +VD++  G+ L+E++ 
Sbjct: 331 SDLGLAV----ELKAGQT--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIA 384
Query: 605 GKTPFKGSG----NRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGA 660
            + PF+  G    N+     V+ Q + +PD    S AS+D    LL K+P+ RLG + G+
Sbjct: 385 ARGPFRARGEKVENKELKQRVLEQAVTYPDK--FSPASKDFCEALLQKDPEKRLGFRDGS 442
Query: 661 TE-IKQHPFFEGVNWALIRCS--TPPEVP 686
            + ++ HP F  ++W  +     TPP VP
Sbjct: 443 CDGLRTHPLFRDISWRQLEAGMLTPPFVP 471

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 15/149 (10%)
Query: 545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY 604
           S+LGL      EL A  T  ++  + GT  ++APE++ GE +  +VD++  G+ L+E++ 
Sbjct: 331 SDLGLAV----ELKAGQT--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIA 384
Query: 605 GKTPFKGSG----NRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGA 660
            + PF+  G    N+     V+ Q + +PD    S AS+D    LL K+P+ RLG + G+
Sbjct: 385 ARGPFRARGEKVENKELKQRVLEQAVTYPDK--FSPASKDFCEALLQKDPEKRLGFRDGS 442
Query: 661 TE-IKQHPFFEGVNWALIRCS--TPPEVP 686
            + ++ HP F  ++W  +     TPP VP
Sbjct: 443 CDGLRTHPLFRDISWRQLEAGMLTPPFVP 471

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 15/149 (10%)
Query: 545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY 604
           S+LGL      EL A  T  ++  + GT  ++APE++ GE +  +VD++  G+ L+E++ 
Sbjct: 331 SDLGLAV----ELKAGQT--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIA 384
Query: 605 GKTPFKGSG----NRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGA 660
            + PF+  G    N+     V+ Q + +PD    S AS+D    LL K+P+ RLG + G+
Sbjct: 385 ARGPFRARGEKVENKELKQRVLEQAVTYPDK--FSPASKDFCEALLQKDPEKRLGFRDGS 442
Query: 661 TE-IKQHPFFEGVNWALIRCS--TPPEVP 686
            + ++ HP F  ++W  +     TPP VP
Sbjct: 443 CDGLRTHPLFRDISWRQLEAGMLTPPFVP 471

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 17/128 (13%)
Query: 570 VGTHEYLAPEII-KGEGHGSAVDWWTFGIFLHELLYGKTPF-------KGSGNRATLFNV 621
           VGTH Y+APE++ KG  + S+ DW++ G  L +LL G +PF       K   +R TL   
Sbjct: 351 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMA 410
Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALIRCS 680
           V      PDS   S   R L+ GLL ++   RLG + RGA E+K+ PFF  ++W ++   
Sbjct: 411 V----ELPDS--FSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQ 464
Query: 681 T--PPEVP 686
              PP +P
Sbjct: 465 KYPPPLIP 472

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 17/128 (13%)
Query: 570 VGTHEYLAPEII-KGEGHGSAVDWWTFGIFLHELLYGKTPF-------KGSGNRATLFNV 621
           VGTH Y+APE++ KG  + S+ DW++ G  L +LL G +PF       K   +R TL   
Sbjct: 351 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMA 410
Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALIRCS 680
           V      PDS   S   R L+ GLL ++   RLG + RGA E+K+ PFF  ++W ++   
Sbjct: 411 V----ELPDS--FSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQ 464
Query: 681 T--PPEVP 686
              PP +P
Sbjct: 465 KYPPPLIP 472

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 17/128 (13%)
Query: 570 VGTHEYLAPEII-KGEGHGSAVDWWTFGIFLHELLYGKTPF-------KGSGNRATLFNV 621
           VGTH Y+APE++ KG  + S+ DW++ G  L +LL G +PF       K   +R TL   
Sbjct: 350 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMA 409
Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALIRCS 680
           V      PDS   S   R L+ GLL ++   RLG + RGA E+K+ PFF  ++W ++   
Sbjct: 410 V----ELPDS--FSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQ 463
Query: 681 T--PPEVP 686
              PP +P
Sbjct: 464 KYPPPLIP 471

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 17/128 (13%)
Query: 570 VGTHEYLAPEII-KGEGHGSAVDWWTFGIFLHELLYGKTPF-------KGSGNRATLFNV 621
           VGTH Y+APE++ KG  + S+ DW++ G  L +LL G +PF       K   +R TL   
Sbjct: 351 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMA 410
Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALIRCS 680
           V      PDS   S   R L+ GLL ++   RLG + RGA E+K+ PFF  ++W ++   
Sbjct: 411 V----ELPDS--FSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQ 464
Query: 681 T--PPEVP 686
              PP +P
Sbjct: 465 KYPPPLIP 472

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 127/335 (37%), Gaps = 90/335 (26%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--ASRKKLTRAQTEREILQL 387
           + ++RLLK +G G+   V L+    T    A+K++DK  L   S +KL R   E  I+++
Sbjct: 14  IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR---EVRIMKI 70
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L+HP +  L+   ET++   L+MEY  GG++             E  AR           
Sbjct: 71  LNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHG--RMKEKEARSKFRQIVSAVQ 128
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGS 507
             H   +V+RDLK EN+L+  D +I ++DF  S    V                 G   +
Sbjct: 129 YCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG----------------GKLDA 172
Query: 508 FCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM 567
           FC                                      G P    PEL          
Sbjct: 173 FC--------------------------------------GAPPYAAPEL---------- 184
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
            F G  +Y  PE+          D W+ G+ L+ L+ G  PF G   +     V+  + R
Sbjct: 185 -FQGK-KYDGPEV----------DVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYR 232
Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATE 662
            P   +T     +L++  LV  P     +KRG  E
Sbjct: 233 IPFYMSTD--CENLLKRFLVLNP-----IKRGTLE 260

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 132/363 (36%), Gaps = 111/363 (30%)
Query: 302 GSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAM 361
           GS  +PH GN                     +RLLK +G G+   V L+    T    A+
Sbjct: 4   GSDEQPHIGN---------------------YRLLKTIGKGNFAKVKLARHILTGREVAI 42
Query: 362 KVMDKASL--ASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLH 419
           K++DK  L   S +KL R   E  I+++L+HP +  L+   ET++   L+MEY  GG++ 
Sbjct: 43  KIIDKTQLNPTSLQKLFR---EVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVF 99
Query: 420 TLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
                       E  AR             H   +V+RDLK EN+L+  D +I ++DF  
Sbjct: 100 DYLVAHG--RMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGF 157
Query: 480 SLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKK 539
           S    V                 G   +FC                              
Sbjct: 158 SNEFTVG----------------GKLDTFC------------------------------ 171
Query: 540 TRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFL 599
                   G P    PEL           F G  +Y  PE+          D W+ G+ L
Sbjct: 172 --------GSPPYAAPEL-----------FQGK-KYDGPEV----------DVWSLGVIL 201
Query: 600 HELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRG 659
           + L+ G  PF G   +     V+  + R P   +T     +L++  LV  P     +KRG
Sbjct: 202 YTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTD--CENLLKRFLVLNP-----IKRG 254
Query: 660 ATE 662
             E
Sbjct: 255 TLE 257

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
           VGT  Y+APE++K E +  + DWW  G  L+E++ G++PF+    +     V       P
Sbjct: 346 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVP 405
Query: 630 DSPATSYA--SRDLIRGLLVKEPQHRLGVKRG-ATEIKQHPFFEGVNWALIRCST--PPE 684
           +  +  ++  +R L   LL K+P  RLG + G A E+K+HP F+ +N+  +      PP 
Sbjct: 406 EEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGAGMLEPPF 465
Query: 685 VPRP 688
            P P
Sbjct: 466 KPDP 469

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
           VGT  Y+APE++K E +  + DWW  G  L+E++ G++PF+    +     V       P
Sbjct: 346 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVP 405
Query: 630 DSPATSYA--SRDLIRGLLVKEPQHRLGVKRG-ATEIKQHPFFEGVNWALIRCST--PPE 684
           +  +  ++  +R L   LL K+P  RLG + G A E+K+HP F+ +N+  +      PP 
Sbjct: 406 EEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGAGMLEPPF 465
Query: 685 VPRP 688
            P P
Sbjct: 466 KPDP 469

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 2/180 (1%)
Query: 320 AIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQ 379
           A+ ++     +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + +
Sbjct: 2   AMESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLR 61
Query: 380 TEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXX 439
            E EI   L HP +  LY +F       L++EY P G+++  ++ Q    F E       
Sbjct: 62  REVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVY--KELQKLSKFDEQRTATYI 119
Query: 440 XXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
                     H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 120 TELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLXGTLDYLP 179

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R     GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 165 SSRRXXLXGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 225 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 264

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 92  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 149
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 150 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLP 200

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 186 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 245
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+ 
Sbjct: 246 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPWI 286

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 2/180 (1%)
Query: 320 AIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQ 379
           A+ ++     +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + +
Sbjct: 2   AMESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLR 61
Query: 380 TEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXX 439
            E EI   L HP +  LY +F       L++EY P G+++  ++ Q    F E       
Sbjct: 62  REVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVY--KELQKLSKFDEQRTATYI 119
Query: 440 XXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
                     H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 120 TELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLP 179

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 165 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 225 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 264

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 2/180 (1%)
Query: 320 AIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQ 379
           A+ ++     +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + +
Sbjct: 2   AMESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLR 61
Query: 380 TEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXX 439
            E EI   L HP +  LY +F       L++EY P G ++  R+ Q    F E       
Sbjct: 62  REVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYI 119
Query: 440 XXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
                     H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 120 TELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLP 179

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 165 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 225 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 264

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F++   LG G    VY +E   T    A+K++DK ++     + R Q E +I   L HP 
Sbjct: 13  FKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPS 72
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +  LY +FE   +  LV+E C  G+++   + +  K FSE  AR             H  
Sbjct: 73  ILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRV-KPFSENEARHFMHQIITGMLYLHSH 131
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           G+++RDL   N+L+  + +I ++DF L+
Sbjct: 132 GILHRDLTLSNLLLTRNMNIKIADFGLA 159

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           +  +  GT  Y++PEI     HG   D W+ G   + LL G+ PF     + TL  VV  
Sbjct: 168 KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLA 227
Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
               P     S  ++DLI  LL + P  RL +    + +  HPF 
Sbjct: 228 DYEMP--SFLSIEAKDLIHQLLRRNPADRLSL----SSVLDHPFM 266

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           ++ +K+LG G  G V L +   T    A+K++ K+S+ +         E  +L+ LDHP 
Sbjct: 23  YQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDHPN 82
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLH---TLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
           +  LY  FE  R   LVME   GG+L     LRQ+     FSE  A              
Sbjct: 83  IMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQK-----FSEVDAAVIMKQVLSGTTYL 137
Query: 450 HMLGVVYRDLKPENVLVRD---DGHIMLSDFDLS 480
           H   +V+RDLKPEN+L+     D  I + DF LS
Sbjct: 138 HKHNIVHRDLKPENLLLESKSRDALIKIVDFGLS 171

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF- 628
           +GT  Y+APE+++ + +    D W+ G+ L+ LL G  PF G  ++  L  V   +  F 
Sbjct: 184 LGTAYYIAPEVLRKK-YDEKCDVWSCGVILYILLCGYPPFGGQTDQEILKRVEKGKFSFD 242
Query: 629 -PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCS 680
            PD    S  ++ L++ +L  EP  R+     A E   HP      W +  CS
Sbjct: 243 PPDWTQVSDEAKQLVKLMLTYEPSKRI----SAEEALNHP------WIVKFCS 285

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 23  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 83  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 140
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 141 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLP 191

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 177 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 236
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+ 
Sbjct: 237 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPWI 277

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           ++ +K+LG G  G V L +   T    A+K++ K+S+ +         E  +L+ LDHP 
Sbjct: 6   YQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDHPN 65
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLH---TLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
           +  LY  FE  R   LVME   GG+L     LRQ+     FSE  A              
Sbjct: 66  IMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQK-----FSEVDAAVIMKQVLSGTTYL 120
Query: 450 HMLGVVYRDLKPENVLVRD---DGHIMLSDFDLS 480
           H   +V+RDLKPEN+L+     D  I + DF LS
Sbjct: 121 HKHNIVHRDLKPENLLLESKSRDALIKIVDFGLS 154

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF- 628
           +GT  Y+APE+++ + +    D W+ G+ L+ LL G  PF G  ++  L  V   +  F 
Sbjct: 167 LGTAYYIAPEVLRKK-YDEKCDVWSCGVILYILLCGYPPFGGQTDQEILKRVEKGKFSFD 225
Query: 629 -PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCS 680
            PD    S  ++ L++ +L  EP  R+     A E   HP      W +  CS
Sbjct: 226 PPDWTQVSDEAKQLVKLMLTYEPSKRI----SAEEALNHP------WIVKFCS 268

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+   +++   A+KV+ KA L       + + E EI   L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 66  RHPNILRLYGYFHDSTRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 123
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 124 CHSKKVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLP 174

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 160 SSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQDTYKRIS 219
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 220 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 259

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 123
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLP 174

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 160 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 220 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 259

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 128
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLP 179

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 165 SSRRTTLCGTLDYLPPEXIEGRXHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 225 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPXLR----EVLEHPW 264

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--ASRKKLTRAQTEREIL 385
           L + ++RLLK +G G+   V L+    T    A+K++DK  L  +S +KL R   E  I+
Sbjct: 4   LHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR---EVRIM 60
Query: 386 QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXX 445
           ++L+HP +  L+   ET++   LVMEY  GG++             E  A+F        
Sbjct: 61  KVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGWMKEKEARAKF--RQIVSA 118
Query: 446 XXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
               H   +V+RDLK EN+L+  D +I ++DF  S
Sbjct: 119 VQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 153

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 568 SFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           +F G+  Y APE+ +G+ + G  VD W+ G+ L+ L+ G  PF G   +     V+  + 
Sbjct: 164 TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 223
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHR 653
           R P   +T     +L++  L+  P  R
Sbjct: 224 RIPFYMSTD--CENLLKKFLILNPSKR 248

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 7/153 (4%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--ASRKKLTRAQTEREILQL 387
           + ++RLLK +G G+   V L+    T    A+K++DK  L  +S +KL R   E  I+++
Sbjct: 13  IGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR---EVRIMKV 69
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L+HP +  L+   ET++   LVMEY  GG++             E  AR           
Sbjct: 70  LNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHG--RMKEKEARAKFRQIVSAVQ 127
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   +V+RDLK EN+L+  D +I ++DF  S
Sbjct: 128 YCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 568 SFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           +F G+  Y APE+ +G+ + G  VD W+ G+ L+ L+ G  PF G   +     V+  + 
Sbjct: 171 TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHR 653
           R P   +T     +L++  L+  P  R
Sbjct: 231 RIPFYMSTD--CENLLKKFLILNPSKR 255

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 126
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLP 177

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 163 SSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 223 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 262

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 7/153 (4%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--ASRKKLTRAQTEREILQL 387
           + ++RLLK +G G+   V L+    T    A+K++DK  L  +S +KL R   E  I+++
Sbjct: 13  IGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR---EVRIMKV 69
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L+HP +  L+   ET++   LVMEY  GG++             E  AR           
Sbjct: 70  LNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHG--RMKEKEARAKFRQIVSAVQ 127
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   +V+RDLK EN+L+  D +I ++DF  S
Sbjct: 128 YCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 568 SFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           +F G   Y APE+ +G+ + G  VD W+ G+ L+ L+ G  PF G   +     V+  + 
Sbjct: 171 AFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHR 653
           R P   +T     +L++  L+  P  R
Sbjct: 231 RIPFYMSTD--CENLLKKFLILNPSKR 255

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 126
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLP 177

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 163 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 223 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 262

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 124
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S     S     + +LD  P
Sbjct: 125 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSCHAPSSRRTTLSGTLDYLP 175

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 161 SSRRTTLSGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 220
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 221 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 260

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 7/153 (4%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--ASRKKLTRAQTEREILQL 387
           + ++RLLK +G G+   V L+    T    A+K++DK  L  +S +KL R   E  I+++
Sbjct: 13  IGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR---EVRIMKV 69
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L+HP +  L+   ET++   LVMEY  GG++             E  AR           
Sbjct: 70  LNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHG--RMKEKEARAKFRQIVSAVQ 127
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   +V+RDLK EN+L+  D +I ++DF  S
Sbjct: 128 YCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 568 SFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           +F G+  Y APE+ +G+ + G  VD W+ G+ L+ L+ G  PF G   +     V+  + 
Sbjct: 171 TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHR 653
           R P   +T     +L++  L+  P  R
Sbjct: 231 RIPFYMSTD--CENLLKKFLILNPSKR 255

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 10  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 70  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 127
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 128 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLP 178

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 164 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 223
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 224 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 263

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 68  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 125
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 126 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLP 176

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R     GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 162 SSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 221
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 222 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 261

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 123
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLP 174

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R     GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 160 SSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 220 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 259

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 5   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 65  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 122
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 123 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLP 173

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 159 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 218
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 219 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 258

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 123
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTXLCGTLDYLP 174

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R     GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 160 SSRRTXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 220 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 259

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 123
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTELCGTLDYLP 174

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R     GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 160 SSRRTELCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 220 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 259

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 92  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 149
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL 481
            H   V++RD+KPEN+L+   G + ++DF  S+
Sbjct: 150 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSV 182

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R     GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 186 SSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 245
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+ 
Sbjct: 246 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPWI 286

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 123
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLP 174

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 160 SSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 220 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 259

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--ASRKKLTRAQTEREILQL 387
           + ++RL K +G G+   V L+    T    A+K++DK  L   S +KL R   E  I+++
Sbjct: 14  IGNYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQLNPTSLQKLFR---EVRIMKI 70
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L+HP +  L+   ET++   LVMEY  GG++             E  AR           
Sbjct: 71  LNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHG--RMKEKEARAKFRQIVSAVQ 128
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL 489
             H   +V+RDLK EN+L+  D +I ++DF  S    V   L
Sbjct: 129 YCHQKYIVHRDLKAENLLLDGDMNIKIADFGFSNEFTVGNKL 170

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 126
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLP 177

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 163 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 223 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 262

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 126
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLP 177

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R     GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 163 SSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 223 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 262

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 16/156 (10%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           ++ +K+LG G  G V L     T    A+K++ K S+++    ++   E  +L+LLDHP 
Sbjct: 39  YQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSN-SKLLEEVAVLKLLDHPN 97
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDL-----HTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           +  LY  FE  R   LVME   GG+L     H ++       F+E  A            
Sbjct: 98  IMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMK-------FNEVDAAVIIKQVLSGVT 150
Query: 448 XXHMLGVVYRDLKPENVLV---RDDGHIMLSDFDLS 480
             H   +V+RDLKPEN+L+     D  I + DF LS
Sbjct: 151 YLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLS 186

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF- 628
           +GT  Y+APE+++ + +    D W+ G+ L  LL G  PF G  ++  L  V   +  F 
Sbjct: 199 LGTAYYIAPEVLRKK-YDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFD 257
Query: 629 -PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
            P+    S  ++DLI+ +L  + Q R+  ++      +HP+ +
Sbjct: 258 SPEWKNVSEGAKDLIKQMLQFDSQRRISAQQAL----EHPWIK 296

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 7/153 (4%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--ASRKKLTRAQTEREILQL 387
           + ++RLLK +G G+   V L+    T    A++++DK  L  +S +KL R   E  I+++
Sbjct: 13  IGNYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFR---EVRIMKV 69
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L+HP +  L+   ET++   LVMEY  GG++             E  AR           
Sbjct: 70  LNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHG--RMKEKEARAKFRQIVSAVQ 127
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   +V+RDLK EN+L+  D +I ++DF  S
Sbjct: 128 YCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 568 SFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           +F G+  Y APE+ +G+ + G  VD W+ G+ L+ L+ G  PF G   +     V+  + 
Sbjct: 171 TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHR 653
           R P   +T     +L++  L+  P  R
Sbjct: 231 RIPFYMSTD--CENLLKKFLILNPSKR 255

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 7/153 (4%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--ASRKKLTRAQTEREILQL 387
           + ++RLLK +G G+   V L+    T    A++++DK  L  +S +KL R   E  I+++
Sbjct: 13  IGNYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFR---EVRIMKV 69
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L+HP +  L+   ET++   LVMEY  GG++             E  AR           
Sbjct: 70  LNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHG--RMKEKEARAKFRQIVSAVQ 127
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   +V+RDLK EN+L+  D +I ++DF  S
Sbjct: 128 YCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 569 FVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           F G+  Y APE+ +G+ + G  VD W+ G+ L+ L+ G  PF G   +     V+  + R
Sbjct: 172 FCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYR 231
Query: 628 FPDSPATSYASRDLIRGLLVKEPQHR 653
            P   +T     +L++  L+  P  R
Sbjct: 232 IPFYMSTD--CENLLKKFLILNPSKR 255

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 123
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLP 174

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R     GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 160 SSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 220 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 259

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 124
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 125 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLP 175

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R     GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 161 SSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 220
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 221 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 260

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 124
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 125 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDTLCGTLDYLP 175

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 161 SSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 220
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 221 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 260

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 128
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 129 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLP 179

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R     GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 165 SSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 225 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 264

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 123
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 124 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLP 174

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R     GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 160 SSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 220 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 259

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 68  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 125
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + +++F  S+    S       +LD  P
Sbjct: 126 CHSKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRTTLCGTLDYLP 176

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 162 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 221
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 222 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 261

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+     +   A+KV+ KA L       + + E EI   L
Sbjct: 3   ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 63  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 120
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + ++DF  S+    S       +LD  P
Sbjct: 121 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLP 171

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 157 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 216
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 217 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 256

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 2/161 (1%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G+VYL+    ++   A+KV+ K  L       + + E EI   L HP +  LY 
Sbjct: 20  LGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 79
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
           +F       L++EY P G ++  R+ Q    F E                 H   V++RD
Sbjct: 80  YFHDATRVYLILEYAPLGTVY--RELQKLSRFDEQRTATYITELANALSYCHSKRVIHRD 137
Query: 459 LKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
           +KPEN+L+  +G + ++DF  S+    S       +LD  P
Sbjct: 138 IKPENLLLGSNGELKIADFGWSVHAPSSRRTTLCGTLDYLP 178

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L G  PF+    + T   + 
Sbjct: 164 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGMPPFEAHTYQETYRRIS 223
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
             +  FPD    +  +RDLI  LL      RL +     E+ +HP+ + 
Sbjct: 224 RVEFTFPD--FVTEGARDLISRLLKHNASQRLTL----AEVLEHPWIKA 266

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 126
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
            H   V++RD+KPEN+L+   G + +++F  S+    S       +LD  P
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRTTLCGTLDYLP 177

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 163 SSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 223 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 262

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP +  LY +F       L++EY P G ++  R+ Q    F E                
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVY--RELQKLSKFDEQRTATYITELANALSY 126
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL 481
            H   V++RD+KPEN+L+   G + ++DF  S+
Sbjct: 127 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSV 159

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R     GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   + 
Sbjct: 163 SSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+
Sbjct: 223 RVEFTFPD--FVTEGARDLISRLLKHNPSQRPMLR----EVLEHPW 262

>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6 Length = 317

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 122/344 (35%), Gaps = 94/344 (27%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL--QLLDH 390
           + L+K +G G+ G   L          A+K ++      R +      +REI+  + L H
Sbjct: 21  YELVKDIGAGNFGVARLMRDKQANELVAVKYIE------RGEKIDENVKREIINHRSLRH 74
Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
           P +        T     +VMEY  GG+L   R    G+ FSE  ARF            H
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFE-RICNAGR-FSEDEARFFFQQLISGVSYAH 132
Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCV 510
            + V +RDLK EN L                             LD  P+ R     F  
Sbjct: 133 AMQVAHRDLKLENTL-----------------------------LDGSPAPRLKIADFGY 163
Query: 511 QPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV 570
             A +  S                       +P+S +G P+                   
Sbjct: 164 SKASVLHS-----------------------QPKSAVGTPA------------------- 181
Query: 571 GTHEYLAPEI-IKGEGHGSAVDWWTFGIFLHELLYGKTPFKG----SGNRATLFNVVGQQ 625
               Y+APE+ +K E  G   D W+ G+ L+ +L G  PF+        R T+  ++  Q
Sbjct: 182 ----YIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQ 237
Query: 626 LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
              PD    S   R LI  + V +P  R+ +     EI+ H +F
Sbjct: 238 YAIPDYVHISPECRHLISRIFVADPAKRISI----PEIRNHEWF 277

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 176 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 235
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+ +
Sbjct: 236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPWIK 276

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 4/164 (2%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           + +++++K LG G  G V L+  ++T    A+K+++K  LA      R + E   L+LL 
Sbjct: 12  IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLR 71
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
           HP +  LY   ++     +V+EY        + QR      SE  AR             
Sbjct: 72  HPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDK---MSEQEARRFFQQIISAVEYC 128
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS 493
           H   +V+RDLKPEN+L+ +  ++ ++DF LS         +KTS
Sbjct: 129 HRHKIVHRDLKPENLLLDEHLNVKIADFGLS-NIMTDGNFLKTS 171

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 4/164 (2%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           + +++++K LG G  G V L+  ++T    A+K+++K  LA      R + E   L+LL 
Sbjct: 13  IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLR 72
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
           HP +  LY   ++     +V+EY        + QR      SE  AR             
Sbjct: 73  HPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDK---MSEQEARRFFQQIISAVEYC 129
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS 493
           H   +V+RDLKPEN+L+ +  ++ ++DF LS         +KTS
Sbjct: 130 HRHKIVHRDLKPENLLLDEHLNVKIADFGLS-NIMTDGNFLKTS 172

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 7/153 (4%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--ASRKKLTRAQTEREILQL 387
           + ++RLLK +G G+   V L+    T    A+K++DK  L  +S +KL R   E  I ++
Sbjct: 13  IGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR---EVRIXKV 69
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L+HP +  L+   ET++   LV EY  GG++             E  A+F          
Sbjct: 70  LNHPNIVKLFEVIETEKTLYLVXEYASGGEVFDYLVAHGRXKEKEARAKFRQIVSAVQYC 129
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   +V+RDLK EN+L+  D +I ++DF  S
Sbjct: 130 --HQKFIVHRDLKAENLLLDADXNIKIADFGFS 160

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 568 SFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           +F G   Y APE+ +G+ + G  VD W+ G+ L+ L+ G  PF G   +     V+  + 
Sbjct: 171 AFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHR 653
           R P   +T     +L++  L+  P  R
Sbjct: 231 RIPFYXSTD--CENLLKKFLILNPSKR 255

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F +++ LG G  G+VYL+     +   A+KV+ K+ L       + + E EI   L HP 
Sbjct: 16  FDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPN 75
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +  +Y +F   +   L++E+ P G+L+  ++ Q    F E  +              H  
Sbjct: 76  ILRMYNYFHDRKRIYLMLEFAPRGELY--KELQKHGRFDEQRSATFMEELADALHYCHER 133
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSL 481
            V++RD+KPEN+L+   G + ++DF  S+
Sbjct: 134 KVIHRDIKPENLLMGYKGELKIADFGWSV 162

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           + R     GT +YL PE+I+G+ H   VD W  G+  +E L G  PF    +  T   +V
Sbjct: 166 SLRRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIV 225
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
              L+FP  P  S  S+DLI  LL   P  RL +K G  E   HP+ + 
Sbjct: 226 NVDLKFP--PFLSDGSKDLISKLLRYHPPQRLPLK-GVME---HPWVKA 268

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 4/164 (2%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           + +++++K LG G  G V L+  ++T    A+K+++K  LA      R + E   L+LL 
Sbjct: 7   IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLR 66
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
           HP +  LY   ++     +V+EY        + QR      SE  AR             
Sbjct: 67  HPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDK---MSEQEARRFFQQIISAVEYC 123
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS 493
           H   +V+RDLKPEN+L+ +  ++ ++DF LS         +KTS
Sbjct: 124 HRHKIVHRDLKPENLLLDEHLNVKIADFGLS-NIMTDGNFLKTS 166

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           + +++++K LG G  G V L+  ++T    A+K+++K  LA      R + E   L+LL 
Sbjct: 3   IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLR 62
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXX 449
           HP +  LY   ++     +V+EY        + QR      SE  AR             
Sbjct: 63  HPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDK---MSEQEARRFFQQIISAVEYC 119
Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           H   +V+RDLKPEN+L+ +  ++ ++DF LS
Sbjct: 120 HRHKIVHRDLKPENLLLDEHLNVKIADFGLS 150

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 2/161 (1%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G+VYL+    ++   A+KV+ K  L       + + E EI   L HP +  LY 
Sbjct: 20  LGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 79
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
           +F       L++EY P G ++  R+ Q    F E                 H   V++RD
Sbjct: 80  YFHDATRVYLILEYAPLGTVY--RELQKLSRFDEQRTATYITELANALSYCHSKRVIHRD 137
Query: 459 LKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDP 499
           +KPEN+L+  +G + ++DF  S+    S       +LD  P
Sbjct: 138 IKPENLLLGSNGELKIADFGWSVHAPSSRRDTLCGTLDYLP 178

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L G  PF+    + T   + 
Sbjct: 164 SSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGMPPFEAHTYQETYRRIS 223
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
             +  FPD    +  +RDLI  LL      RL +     E+ +HP+ + 
Sbjct: 224 RVEFTFPD--FVTEGARDLISRLLKHNASQRLTL----AEVLEHPWIKA 266

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 176 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 235
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+
Sbjct: 236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPW 274

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 176 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 235
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+
Sbjct: 236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPW 274

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 176 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 235
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+ +
Sbjct: 236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPWIK 276

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 176 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 235
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+
Sbjct: 236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPW 274

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 176 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 235
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+
Sbjct: 236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPW 274

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 176 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 235
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+
Sbjct: 236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPW 274

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 176 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 235
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+
Sbjct: 236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPW 274

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 175 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 234
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+
Sbjct: 235 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPW 273

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 176 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 235
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+
Sbjct: 236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPW 274

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R  +  GT +YL PE+I+G  H   VD W  G+  +ELL G  PF+ + +  T   +V  
Sbjct: 177 RRKTMCGTLDYLPPEMIEGRMHNEKVDLWCIGVLCYELLVGNPPFESASHNETYRRIVKV 236
Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
            L+FP S  T   ++DLI  LL   P  RL +     ++  HP+
Sbjct: 237 DLKFPASVPT--GAQDLISKLLRHNPSERLPL----AQVSAHPW 274

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 175 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 234
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+
Sbjct: 235 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPW 273

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 176 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 235
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+
Sbjct: 236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPW 274

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 176 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 235
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+
Sbjct: 236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPW 274

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 134/347 (38%), Gaps = 86/347 (24%)
Query: 325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI 384
           DG + + H+ L   LG G  G V + E   T    A+K++++  + S   + + + E + 
Sbjct: 5   DGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQN 64
Query: 385 LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXX 444
           L+L  HP +  LY    T     +VMEY  GG+L     +  G+   E  AR        
Sbjct: 65  LKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKH-GR-VEEMEARRLFQQILS 122
Query: 445 XXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGP 504
                H   VV+RDLKPENVL+    +  ++DF L             S++ SD      
Sbjct: 123 AVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGL-------------SNMMSD------ 163
Query: 505 GGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA 564
            G F                                   R+  G P+   PE+++     
Sbjct: 164 -GEFL----------------------------------RTSCGSPNYAAPEVISGRL-- 186
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV-G 623
                     Y  PE+          D W+ G+ L+ LL G  PF    +  TLF  + G
Sbjct: 187 ----------YAGPEV----------DIWSCGVILYALLCGTLPFDDE-HVPTLFKKIRG 225
Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
                P+    S A+  L+  +L  +P  R  +K    +I++H +F+
Sbjct: 226 GVFYIPEYLNRSVAT--LLMHMLQVDPLKRATIK----DIREHEWFK 266

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 2/143 (1%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G+VYL+     +   A+KV+ K+ L       + + E EI   L HP +  +Y 
Sbjct: 23  LGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYN 82
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
           +F   +   L++E+ P G+L+  ++ Q    F E  +              H   V++RD
Sbjct: 83  YFHDRKRIYLMLEFAPRGELY--KELQKHGRFDEQRSATFMEELADALHYCHERKVIHRD 140
Query: 459 LKPENVLVRDDGHIMLSDFDLSL 481
           +KPEN+L+   G + ++DF  S+
Sbjct: 141 IKPENLLMGYKGELKIADFGWSV 163

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           + R     GT +YL PE+I+G+ H   VD W  G+  +E L G  PF    +  T   +V
Sbjct: 167 SLRRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIV 226
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
              L+FP  P  S  S+DLI  LL   P  RL +K G  E   HP+ + 
Sbjct: 227 NVDLKFP--PFLSDGSKDLISKLLRYHPPQRLPLK-GVME---HPWVKA 269

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 123/342 (35%), Gaps = 110/342 (32%)
Query: 359 FAMKVMDKASLASRKKLTR-------AQTEREILQLLDHPFLPTLYTHFETDRFSCLVME 411
           +A+K+++K +  SR ++ R        Q  + IL+L++          FE D    LV E
Sbjct: 41  YAVKIIEKQAGHSRSRVFREVETLYQCQGNKNILELIEF---------FEDDTRFYLVFE 91
Query: 412 YCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGH 471
              GG +    Q+Q  KHF+E  A              H  G+ +RDLKPEN+       
Sbjct: 92  KLQGGSILAHIQKQ--KHFNEREASRVVRDVAAALDFLHTKGIAHRDLKPENI------- 142
Query: 472 IMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRI 531
                                                C  P  + P  +C          
Sbjct: 143 ------------------------------------LCESPEKVSPVKICD--------- 157
Query: 532 FPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEII-----KGEGH 586
           F   +  K     + +  P  T P               G+ EY+APE++     +   +
Sbjct: 158 FDLGSGMKLNNSCTPITTPELTTP--------------CGSAEYMAPEVVEVFTDQATFY 203
Query: 587 GSAVDWWTFGIFLHELLYGKTPFKG------SGNRATLFNVVGQQL---------RFPDS 631
               D W+ G+ L+ +L G  PF G        +R  +  V   +L          FPD 
Sbjct: 204 DKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDK 263
Query: 632 PATSYAS--RDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
                +S  +DLI  LLV++ + RL     A ++ QHP+ +G
Sbjct: 264 DWAHISSEAKDLISKLLVRDAKQRL----SAAQVLQHPWVQG 301

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 126/347 (36%), Gaps = 100/347 (28%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL--QLLDH 390
           + L+K +G G+ G   L     +    A+K ++      R +   A  +REI+  + L H
Sbjct: 21  YELVKDIGSGNFGVARLMRDKQSNELVAVKYIE------RGEKIAANVKREIINHRSLRH 74
Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
           P +        T     +VMEY  GG+L   R    G+ FSE  ARF            H
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFE-RICNAGR-FSEDEARFFFQQLISGVSYCH 132
Query: 451 MLGVVYRDLKPENVLVRDDG----HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGG 506
            + V +RDLK EN L+  DG     + + DF  S          K+S L S         
Sbjct: 133 AMQVCHRDLKLENTLL--DGSPAPRLKICDFGYS----------KSSVLHS--------- 171
Query: 507 SFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS 566
                                              +P+S +G P+   PE+         
Sbjct: 172 -----------------------------------QPKSTVGTPAYIAPEV--------- 187
Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKG----SGNRATLFNVV 622
                        ++K E  G   D W+ G+ L+ +L G  PF+        R T+  ++
Sbjct: 188 -------------LLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRIL 234
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             Q   PD    S   R LI  + V +P  R+ +     EI+ H +F
Sbjct: 235 NVQYAIPDYVHISPECRHLISRIFVADPAKRISI----PEIRNHEWF 277

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT  ++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      
Sbjct: 176 NIFGTPAFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 235
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
           F D     TS  ++D IR LLVK+P+ R+ ++       QHP+ +
Sbjct: 236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL----QHPWIK 276

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 2/156 (1%)
Query: 325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI 384
           DG + + H+ L   LG G  G V + E   T    A+K++++  + S   + + + E + 
Sbjct: 5   DGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQN 64
Query: 385 LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXX 444
           L+L  HP +  LY    T     +VMEY  GG+L     +  G+   E  AR        
Sbjct: 65  LKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKH-GR-VEEMEARRLFQQILS 122
Query: 445 XXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                H   VV+RDLKPENVL+    +  ++DF LS
Sbjct: 123 AVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS 158

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL N+      
Sbjct: 177 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYD 236
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN--WALIR 678
           F +     TS  ++D IR LLVKE + RL ++    E  +HP+   V+   A++R
Sbjct: 237 FDEEFFSQTSELAKDFIRKLLVKETRKRLTIQ----EALRHPWITPVDTQQAMVR 287

>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase Length = 362

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 122/343 (35%), Gaps = 92/343 (26%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL--QLLDH 390
           + L+K +G G+ G   L     +    A+K ++      R +      +REI+  + L H
Sbjct: 21  YELVKDIGSGNFGVARLMRDKQSNELVAVKYIE------RGEKIDENVKREIINHRSLRH 74
Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
           P +        T     +VMEY  GG+L   R    G+ FSE  ARF            H
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFE-RICNAGR-FSEDEARFFFQQLISGVSYCH 132
Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCV 510
            + V +RDLK EN L                             LD  P+ R    +F  
Sbjct: 133 AMQVCHRDLKLENTL-----------------------------LDGSPAPRLKICAFGY 163
Query: 511 QPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV 570
             + +  S                       +P+S +G P+   PE+             
Sbjct: 164 SKSSVLHS-----------------------QPKSTVGTPAYIAPEV------------- 187
Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKG----SGNRATLFNVVGQQL 626
                    ++K E  G   D W+ G+ L+ +L G  PF+        R T+  ++  Q 
Sbjct: 188 ---------LLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQY 238
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             PD    S   R LI  + V +P  R+ +     EI+ H +F
Sbjct: 239 AIPDYVHISPECRHLISRIFVADPAKRISI----PEIRNHEWF 277

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 121/343 (35%), Gaps = 92/343 (26%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL--QLLDH 390
           + L+K +G G+ G   L     +    A+K ++      R +      +REI+  + L H
Sbjct: 20  YELVKDIGSGNFGVARLMRDKQSNELVAVKYIE------RGEKIDENVKREIINHRSLRH 73
Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
           P +        T     +VMEY  GG+L   R    G+ FSE  ARF            H
Sbjct: 74  PNIVRFKEVILTPTHLAIVMEYASGGELFE-RICNAGR-FSEDEARFFFQQLISGVSYCH 131
Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCV 510
            + V +RDLK EN L                             LD  P+ R     F  
Sbjct: 132 AMQVCHRDLKLENTL-----------------------------LDGSPAPRLKICDFGY 162
Query: 511 QPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV 570
             + +  S                       +P+S +G P+   PE+             
Sbjct: 163 SKSSVLHS-----------------------QPKSTVGTPAYIAPEV------------- 186
Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKG----SGNRATLFNVVGQQL 626
                    ++K E  G   D W+ G+ L+ +L G  PF+        R T+  ++  Q 
Sbjct: 187 ---------LLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQY 237
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             PD    S   R LI  + V +P  R+ +     EI+ H +F
Sbjct: 238 AIPDYVHISPECRHLISRIFVADPAKRISI----PEIRNHEWF 276

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL N+      
Sbjct: 177 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYD 236
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN--WALIR 678
           F +     TS  ++D IR LLVKE + RL ++    E  +HP+   V+   A++R
Sbjct: 237 FDEEFFSQTSELAKDFIRKLLVKETRKRLTIQ----EALRHPWITPVDNQQAMVR 287

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 15/171 (8%)
Query: 313 PRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR 372
           PRWK    IR       +  FR +  LG G    V L+E   T+   A+K + K +L  +
Sbjct: 8   PRWKQAEDIR------DIYDFRDV--LGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGK 59
Query: 373 KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSE 432
           +     + E  +L  + HP +  L   +E+     L+M+   GG+L   R  + G +   
Sbjct: 60  E--GSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFD-RIVEKGFYTER 116
Query: 433 YAARFXXXXXXXXXXXXHMLGVVYRDLKPENVL---VRDDGHIMLSDFDLS 480
            A+R             H LG+V+RDLKPEN+L   + +D  IM+SDF LS
Sbjct: 117 DASRLIFQVLDAVKYL-HDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLS 166

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT  Y+APE++  + +  AVD W+ G+  + LL G  PF    N A LF  + +     D
Sbjct: 180 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE-NDAKLFEQILKAEYEFD 238
Query: 631 SPA---TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           SP     S +++D IR L+ K+P+ R   ++      QHP+  G
Sbjct: 239 SPYWDDISDSAKDFIRHLMEKDPEKRFTCEQAL----QHPWIAG 278

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL N+      
Sbjct: 177 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYD 236
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN--WALIR 678
           F +     TS  ++D IR LLVKE + RL ++    E  +HP+   V+   A++R
Sbjct: 237 FDEEFFSQTSELAKDFIRKLLVKETRKRLTIQ----EALRHPWITPVDNQQAMVR 287

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 15/171 (8%)
Query: 313 PRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR 372
           PRWK    IR       +  FR +  LG G    V L+E   T+   A+K + K +L  +
Sbjct: 8   PRWKQAEDIR------DIYDFRDV--LGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGK 59
Query: 373 KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSE 432
           +     + E  +L  + HP +  L   +E+     L+M+   GG+L   R  + G +   
Sbjct: 60  E--GSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFD-RIVEKGFYTER 116
Query: 433 YAARFXXXXXXXXXXXXHMLGVVYRDLKPENVL---VRDDGHIMLSDFDLS 480
            A+R             H LG+V+RDLKPEN+L   + +D  IM+SDF LS
Sbjct: 117 DASRLIFQVLDAVKYL-HDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLS 166

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT  Y+APE++  + +  AVD W+ G+  + LL G  PF    N A LF  + +     D
Sbjct: 180 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE-NDAKLFEQILKAEYEFD 238
Query: 631 SPA---TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           SP     S +++D IR L+ K+P+ R   ++      QHP+  G
Sbjct: 239 SPYWDDISDSAKDFIRHLMEKDPEKRFTCEQAL----QHPWIAG 278

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 313 PRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR 372
           PRWK    IR       +  FR    LG G    V L+E   T+   A+K + K +L  +
Sbjct: 8   PRWKQAEDIR------DIYDFR--DVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGK 59
Query: 373 KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSE 432
           +     + E  +L  + HP +  L   +E+     L+M+   GG+L   R  + G +   
Sbjct: 60  E--GSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFD-RIVEKGFYTER 116
Query: 433 YAARFXXXXXXXXXXXXHMLGVVYRDLKPENVL---VRDDGHIMLSDFDLS 480
            A+R             H LG+V+RDLKPEN+L   + +D  IM+SDF LS
Sbjct: 117 DASRLIFQVLDAVKYL-HDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLS 166

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT  Y+APE++  + +  AVD W+ G+  + LL G  PF    N A LF  + +     D
Sbjct: 180 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE-NDAKLFEQILKAEYEFD 238
Query: 631 SPA---TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           SP     S +++D IR L+ K+P+ R   ++      QHP+  G
Sbjct: 239 SPYWDDISDSAKDFIRHLMEKDPEKRFTCEQAL----QHPWIAG 278

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 15/171 (8%)
Query: 313 PRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR 372
           PRWK    IR       +  FR +  LG G    V L+E   T+   A+K + K +L  +
Sbjct: 8   PRWKQAEDIR------DIYDFRDV--LGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGK 59
Query: 373 KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSE 432
           +     + E  +L  + HP +  L   +E+     L+M+   GG+L   R  + G +   
Sbjct: 60  E--GSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFD-RIVEKGFYTER 116
Query: 433 YAARFXXXXXXXXXXXXHMLGVVYRDLKPENVL---VRDDGHIMLSDFDLS 480
            A+R             H LG+V+RDLKPEN+L   + +D  IM+SDF LS
Sbjct: 117 DASRLIFQVLDAVKYL-HDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLS 166

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT  Y+APE++  + +  AVD W+ G+  + LL G  PF    N A LF  + +     D
Sbjct: 180 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE-NDAKLFEQILKAEYEFD 238
Query: 631 SPA---TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           SP     S +++D IR L+ K+P+ R   ++      QHP+  G
Sbjct: 239 SPYWDDISDSAKDFIRHLMEKDPEKRFTCEQAL----QHPWIAG 278

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL N+      
Sbjct: 177 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYD 236
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN--WALIR 678
           F +     TS  ++D IR LLVKE + RL ++    E  +HP+   V+   A++R
Sbjct: 237 FDEEFFSHTSELAKDFIRKLLVKETRKRLTIQ----EALRHPWITPVDNQQAMVR 287

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 121/343 (35%), Gaps = 92/343 (26%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL--QLLDH 390
           + L+K +G G+ G   L     +    A+K ++      R +      +REI+  + L H
Sbjct: 21  YELVKDIGSGNFGVARLMRDKQSNELVAVKYIE------RGEKIDENVKREIINHRSLRH 74
Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
           P +        T     +VMEY  GG+L   R    G+ FSE  ARF            H
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFE-RICNAGR-FSEDEARFFFQQLISGVSYCH 132
Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCV 510
            + V +RDLK EN L                             LD  P+ R    +F  
Sbjct: 133 AMQVCHRDLKLENTL-----------------------------LDGSPAPRLKICAFGY 163
Query: 511 QPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV 570
             + +  S                       +P+  +G P+   PE+             
Sbjct: 164 SKSSVLHS-----------------------QPKDTVGTPAYIAPEV------------- 187
Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKG----SGNRATLFNVVGQQL 626
                    ++K E  G   D W+ G+ L+ +L G  PF+        R T+  ++  Q 
Sbjct: 188 ---------LLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQY 238
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             PD    S   R LI  + V +P  R+ +     EI+ H +F
Sbjct: 239 AIPDYVHISPECRHLISRIFVADPAKRISI----PEIRNHEWF 277

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F   ++LG G  G V+L E  S+     +K ++K    S+  + + + E E+L+ LDHP 
Sbjct: 24  FIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDR--SQVPMEQIEAEIEVLKSLDHPN 81
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
           +  ++  FE      +VME C GG+L    +  +  GK  SE                 H
Sbjct: 82  IIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH 141
Query: 451 MLGVVYRDLKPENVLVRDDG-H--IMLSDFDLS 480
              VV++DLKPEN+L +D   H  I + DF L+
Sbjct: 142 SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLA 174

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL N+      
Sbjct: 177 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYD 236
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN--WALIR 678
           F +     TS  ++D IR LLVKE + RL ++    E  +HP+   V+   A++R
Sbjct: 237 FDEEFFSHTSELAKDFIRKLLVKETRKRLTIQ----EALRHPWITPVDNQQAMVR 287

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL N+      
Sbjct: 177 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYD 236
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN--WALIR 678
           F +     TS  ++D IR LLVKE + RL ++    E  +HP+   V+   A++R
Sbjct: 237 FDEEFFSHTSELAKDFIRKLLVKETRKRLTIQ----EALRHPWITPVDNQQAMVR 287

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Query: 322 RARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTE 381
           +  DG + + H+ L   LG G  G V + +   T    A+K++++  + S   + + + E
Sbjct: 7   QKHDGRVKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRRE 66
Query: 382 REILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXX 441
            + L+L  HP +  LY    T     +VMEY  GG+L     +       E    F    
Sbjct: 67  IQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQIL 126
Query: 442 XXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                   HM  VV+RDLKPENVL+    +  ++DF LS
Sbjct: 127 SGVDYCHRHM--VVHRDLKPENVLLDAHMNAKIADFGLS 163

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 319 LAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA------SR 372
           + +R ++G +G S+F++ ++LG G  G V L +  +     A+KV+ K+           
Sbjct: 25  MYVRKKEGKIGESYFKV-RKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDN 83
Query: 373 KKLTRAQ----TEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGK 428
           K + +       E  +L+ LDHP +  L+  FE  ++  LV E+  GG+L    Q     
Sbjct: 84  KNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGEL--FEQIINRH 141
Query: 429 HFSEYAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDG---HIMLSDFDLS 480
            F E  A              H   +V+RD+KPEN+L+ +     +I + DF LS
Sbjct: 142 KFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLS 196

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 127/341 (37%), Gaps = 86/341 (25%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + ++  LG G  G V   +   T+  +A+KV++KAS A  K  +    E E+L+ LDHP 
Sbjct: 24  YNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKAS-AKNKDTSTILREVELLKKLDHPN 82
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEY-AARFXXXXXXXXXXXXHM 451
           +  L+   E      +V E   GG+L    +    K FSE+ AAR               
Sbjct: 83  IMKLFEILEDSSSFYIVGELYTGGEL--FDEIIKRKRFSEHDAARIIKQVFS-------- 132
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ 511
            G+ Y  +   N++ RD                    L+++   D D      G S C  
Sbjct: 133 -GITY--MHKHNIVHRD--------------LKPENILLESKEKDCDIKIIDFGLSTC-- 173
Query: 512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG 571
                               F Q  K K R                            +G
Sbjct: 174 --------------------FQQNTKMKDR----------------------------IG 185
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF--P 629
           T  Y+APE+++G  +    D W+ G+ L+ LL G  PF G      L  V   +  F  P
Sbjct: 186 TAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLP 244
Query: 630 DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
                S  ++DLIR +L   P  R+     AT+  +HP+ +
Sbjct: 245 QWRTISDDAKDLIRKMLTFHPSLRI----TATQCLEHPWIQ 281

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL N+      
Sbjct: 177 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYD 236
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGV 656
           F +     TS  ++D IR LLVK+P+ R+ +
Sbjct: 237 FDEEYFSNTSELAKDFIRRLLVKDPKRRMXI 267

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL N+      
Sbjct: 170 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYD 229
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGV 656
           F +     TS  ++D IR LLVK+P+ R+ +
Sbjct: 230 FDEEYFSNTSELAKDFIRRLLVKDPKRRMTI 260

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL N+      
Sbjct: 191 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYD 250
Query: 628 FPDS--PATSYASRDLIRGLLVKEPQHRLGV 656
           F +     TS  ++D IR LLVK+P+ R+ +
Sbjct: 251 FDEEYFSNTSELAKDFIRRLLVKDPKRRMXI 281

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 68/154 (44%), Gaps = 5/154 (3%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G V L +   T    A+KV+ K  +  +        E ++L+ LDHP +  LY 
Sbjct: 58  LGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYE 117
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
            FE   +  LV E   GG+L    +    K FSE  A              H   +V+RD
Sbjct: 118 FFEDKGYFYLVGEVYTGGEL--FDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRD 175
Query: 459 LKPENVLVR---DDGHIMLSDFDLSLRCAVSPTL 489
           LKPEN+L+     D +I + DF LS     S  +
Sbjct: 176 LKPENLLLESKSKDANIRIIDFGLSTHFEASKKM 209

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF- 628
           +GT  Y+APE++ G  +    D W+ G+ L+ LL G  PF G+     L  V   +  F 
Sbjct: 213 IGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFE 271
Query: 629 -PDSPATSYASRDLIRGLLVKEPQHRLGVK 657
            P     S +++DLIR +L   P  R+  +
Sbjct: 272 LPQWKKVSESAKDLIRKMLTYVPSMRISAR 301

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 68/154 (44%), Gaps = 5/154 (3%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G V L +   T    A+KV+ K  +  +        E ++L+ LDHP +  LY 
Sbjct: 57  LGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYE 116
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
            FE   +  LV E   GG+L    +    K FSE  A              H   +V+RD
Sbjct: 117 FFEDKGYFYLVGEVYTGGEL--FDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRD 174
Query: 459 LKPENVLVR---DDGHIMLSDFDLSLRCAVSPTL 489
           LKPEN+L+     D +I + DF LS     S  +
Sbjct: 175 LKPENLLLESKSKDANIRIIDFGLSTHFEASKKM 208

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF- 628
           +GT  Y+APE++ G  +    D W+ G+ L+ LL G  PF G+     L  V   +  F 
Sbjct: 212 IGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFE 270
Query: 629 -PDSPATSYASRDLIRGLLVKEPQHRLGVK 657
            P     S +++DLIR +L   P  R+  +
Sbjct: 271 LPQWKKVSESAKDLIRKMLTYVPSMRISAR 300

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 6/177 (3%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + ++  LG G  G VY ++   T    A KV++  S    ++L     E EIL   DHP+
Sbjct: 13  WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKS---EEELEDYIVEIEILATCDHPY 69
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +  L   +  D    +++E+CPGG +  +   +  +  +E   +             H  
Sbjct: 70  IVKLLGAYYHDGKLWIMIEFCPGGAVDAI-MLELDRGLTEPQIQVVCRQMLEALNFLHSK 128
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFC 509
            +++RDLK  NVL+  +G I L+DF +S +     TL K  S    P    P    C
Sbjct: 129 RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNL--KTLQKRDSFIGTPYWMAPEVVMC 183

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G V L +   T    A+KV+ K  +  +        E ++L+ LDHP +  LY 
Sbjct: 34  LGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIXKLYE 93
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
            FE   +  LV E   GG+L    +    K FSE  A              H   +V+RD
Sbjct: 94  FFEDKGYFYLVGEVYTGGEL--FDEIISRKRFSEVDAARIIRQVLSGITYXHKNKIVHRD 151
Query: 459 LKPENVLVR---DDGHIMLSDFDLS 480
           LKPEN+L+     D +I + DF LS
Sbjct: 152 LKPENLLLESKSKDANIRIIDFGLS 176

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF- 628
           +GT  Y+APE++ G  +    D W+ G+ L+ LL G  PF G+     L  V   +  F 
Sbjct: 189 IGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFE 247
Query: 629 -PDSPATSYASRDLIRGLLVKEPQHRLGVK 657
            P     S +++DLIR  L   P  R+  +
Sbjct: 248 LPQWKKVSESAKDLIRKXLTYVPSXRISAR 277

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G V+  E ++T    A K++    +  ++++   + E  ++  LDH  L  LY 
Sbjct: 97  LGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEV---KNEISVMNQLDHANLIQLYD 153
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
            FE+     LVMEY  GG+L   R      + +E                 H + +++ D
Sbjct: 154 AFESKNDIVLVMEYVDGGELFD-RIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLD 212
Query: 459 LKPENVLV--RDDGHIMLSDFDLSLR 482
           LKPEN+L   RD   I + DF L+ R
Sbjct: 213 LKPENILCVNRDAKQIKIIDFGLARR 238

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT E+LAPE++  +      D W+ G+  + LL G +PF G  +  TL N++  +    D
Sbjct: 250 GTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLED 309
Query: 631 S--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
                 S  +++ I  LL+KE   R+     A+E  +HP+ 
Sbjct: 310 EEFQDISEEAKEFISKLLIKEKSWRI----SASEALKHPWL 346

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
            ++ L   +G G  G V ++    TR   A K + K  +   + + R + E EI++ LDH
Sbjct: 9   QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV---EDVDRFKQEIEIMKSLDH 65
Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKH-FSEYAARFXXXXXXXXXXXX 449
           P +  LY  FE +    LVME C GG+L    +R   K  F E  A              
Sbjct: 66  PNIIRLYETFEDNTDIYLVMELCTGGELF---ERVVHKRVFRESDAARIMKDVLSAVAYC 122
Query: 450 HMLGVVYRDLKPENVLVRD---DGHIMLSDFDLSLR 482
           H L V +RDLKPEN L      D  + L DF L+ R
Sbjct: 123 HKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAAR 158

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
           VGT  Y++P++++G  +G   D W+ G+ ++ LL G  PF    +   +  +      FP
Sbjct: 169 VGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDXEVMLKIREGTFTFP 227
Query: 630 --DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
             D    S  +  LIR LL K P+ R+     + +  +H +FE
Sbjct: 228 EKDWLNVSPQAESLIRRLLTKSPKQRI----TSLQALEHEWFE 266

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F   + LG G    V L+E  +T   FA+K + K +L  + K +  + E  +L+ + H  
Sbjct: 24  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKAL--KGKESSIENEIAVLRKIKHEN 81
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +  L   +E+     LVM+   GG+L   R  + G  ++E  A              H +
Sbjct: 82  IVALEDIYESPNHLYLVMQLVSGGELFD-RIVEKG-FYTEKDASTLIRQVLDAVYYLHRM 139
Query: 453 GVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           G+V+RDLKPEN+L     ++  IM+SDF LS
Sbjct: 140 GIVHRDLKPENLLYYSQDEESKIMISDFGLS 170

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT  Y+APE++  + +  AVD W+ G+  + LL G  PF    +      ++  +  F D
Sbjct: 184 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF-D 242
Query: 631 SPA---TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           SP     S +++D IR L+ K+P  R   ++ A    +HP+  G
Sbjct: 243 SPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAA----RHPWIAG 282

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G     Y      T+  FA KV+ K+ L    +  +  TE  I + LD+P +   + 
Sbjct: 50  LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHG 109
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
            FE D F  +V+E C    L  L +R+  K  +E  AR+            H   V++RD
Sbjct: 110 FFEDDDFVYVVLEICRRRSLLELHKRR--KAVTEPEARYFMRQTIQGVQYLHNNRVIHRD 167
Query: 459 LKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPS 518
           LK  N+ + DD  + + DF L+            + ++ D  R+    + C  P  I P 
Sbjct: 168 LKLGNLFLNDDMDVKIGDFGLA------------TKIEFDGERK---KTLCGTPNYIAPE 212
Query: 519 SVC 521
            +C
Sbjct: 213 VLC 215

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R  +  GT  Y+APE++  +GH   VD W+ G  L+ LL GK PF+ S  + T   +   
Sbjct: 198 RKKTLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKN 257
Query: 625 QLRFPD--SPATSYASRDLIRGLLVKEPQHRLGVKRGATE 662
           +   P   +P  S     LIR +L  +P  R  V    T+
Sbjct: 258 EYSVPRHINPVAS----ALIRRMLHADPTLRPSVAELLTD 293

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 6/177 (3%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + ++  LG G  G VY ++   T    A KV++  S    ++L     E EIL   DHP+
Sbjct: 21  WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKS---EEELEDYIVEIEILATCDHPY 77
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +  L   +  D    +++E+CPGG +  +   +  +  +E   +             H  
Sbjct: 78  IVKLLGAYYHDGKLWIMIEFCPGGAVDAI-MLELDRGLTEPQIQVVCRQMLEALNFLHSK 136
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFC 509
            +++RDLK  NVL+  +G I L+DF +S +     TL K  S    P    P    C
Sbjct: 137 RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNL--KTLQKRDSFIGTPYWMAPEVVMC 191

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 129/343 (37%), Gaps = 90/343 (26%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + ++  LG G  G V   +   T+  +A+KV++KAS A  K  +    E E+L+ LDHP 
Sbjct: 24  YNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKAS-AKNKDTSTILREVELLKKLDHPN 82
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEY-AARFXXXXXXXXXXXXHM 451
           +  L+   E      +V E   GG+L    +    K FSE+ AAR               
Sbjct: 83  IMKLFEILEDSSSFYIVGELYTGGEL--FDEIIKRKRFSEHDAARIIKQVFS-------- 132
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP--TLIKTSSLDSDPSRRGPGGSFC 509
            G+ Y  +   N++ RD                + P   L+++   D D      G S C
Sbjct: 133 -GITY--MHKHNIVHRD----------------LKPENILLESKEKDCDIKIIDFGLSTC 173
Query: 510 VQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF 569
                                 F Q  K K R                            
Sbjct: 174 ----------------------FQQNTKMKDR---------------------------- 183
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF- 628
           +GT  Y+APE+++G  +    D W+ G+ L+ LL G  PF G      L  V   +  F 
Sbjct: 184 IGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFD 242
Query: 629 -PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
            P     S  ++DLIR +L   P  R+     AT+  +HP+ +
Sbjct: 243 LPQWRTISDDAKDLIRKMLTFHPSLRI----TATQCLEHPWIQ 281

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 68/154 (44%), Gaps = 5/154 (3%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G V L +   T    A+KV+ K  +  +        E ++L+ LDHP +  LY 
Sbjct: 34  LGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYE 93
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
            FE   +  LV E   GG+L    +    K FSE  A              H   +V+RD
Sbjct: 94  FFEDKGYFYLVGEVYTGGEL--FDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRD 151
Query: 459 LKPENVLVR---DDGHIMLSDFDLSLRCAVSPTL 489
           LKPEN+L+     D +I + DF LS     S  +
Sbjct: 152 LKPENLLLESKSKDANIRIIDFGLSTHFEASKKM 185

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF- 628
           +GT  Y+APE++ G  +    D W+ G+ L+ LL G  PF G+     L  V   +  F 
Sbjct: 189 IGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFE 247
Query: 629 -PDSPATSYASRDLIRGLLVKEPQHRLGVK 657
            P     S +++DLIR +L   P  R+  +
Sbjct: 248 LPQWKKVSESAKDLIRKMLTYVPSMRISAR 277

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
            ++ L   +G G  G V ++    TR   A K + K  +   + + R + E EI++ LDH
Sbjct: 26  QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV---EDVDRFKQEIEIMKSLDH 82
Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKH-FSEYAARFXXXXXXXXXXXX 449
           P +  LY  FE +    LVME C GG+L    +R   K  F E  A              
Sbjct: 83  PNIIRLYETFEDNTDIYLVMELCTGGELF---ERVVHKRVFRESDAARIMKDVLSAVAYC 139
Query: 450 HMLGVVYRDLKPENVLVRD---DGHIMLSDFDLSLR 482
           H L V +RDLKPEN L      D  + L DF L+ R
Sbjct: 140 HKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAAR 175

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
           VGT  Y++P++++G  +G   D W+ G+ ++ LL G  PF    +   +  +      FP
Sbjct: 186 VGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDXEVMLKIREGTFTFP 244
Query: 630 --DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
             D    S  +  LIR LL K P+ R+     + +  +H +FE
Sbjct: 245 EKDWLNVSPQAESLIRRLLTKSPKQRI----TSLQALEHEWFE 283

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Query: 546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYG 605
           + GL +   P+ + + T A       T E+ APEI+  E  G   D W  G+  + LL G
Sbjct: 194 DFGLATKLNPDEIVKVTTA-------TAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSG 246
Query: 606 KTPFKGSGNRATLFNVVGQQLRFPDSPATSYA--SRDLIRGLLVKEPQHRLGVKRGATEI 663
            +PF G  +  TL NV      F +   +S +  ++D I+ LL KEP+ RL V       
Sbjct: 247 LSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDAL--- 303
Query: 664 KQHPFFEG 671
            +HP+ +G
Sbjct: 304 -EHPWLKG 310

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 129/343 (37%), Gaps = 90/343 (26%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + ++  LG G  G V   +   T+  +A+KV++KAS A  K  +    E E+L+ LDHP 
Sbjct: 24  YNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKAS-AKNKDTSTILREVELLKKLDHPN 82
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEY-AARFXXXXXXXXXXXXHM 451
           +  L+   E      +V E   GG+L    +    K FSE+ AAR               
Sbjct: 83  IMKLFEILEDSSSFYIVGELYTGGEL--FDEIIKRKRFSEHDAARIIKQVFS-------- 132
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP--TLIKTSSLDSDPSRRGPGGSFC 509
            G+ Y  +   N++ RD                + P   L+++   D D      G S C
Sbjct: 133 -GITY--MHKHNIVHRD----------------LKPENILLESKEKDCDIKIIDFGLSTC 173
Query: 510 VQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF 569
                                 F Q  K K R                            
Sbjct: 174 ----------------------FQQNTKMKDR---------------------------- 183
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF- 628
           +GT  Y+APE+++G  +    D W+ G+ L+ LL G  PF G      L  V   +  F 
Sbjct: 184 IGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFD 242
Query: 629 -PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
            P     S  ++DLIR +L   P  R+     AT+  +HP+ +
Sbjct: 243 LPQWRTISDDAKDLIRKMLTFHPSLRI----TATQCLEHPWIQ 281

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 68/154 (44%), Gaps = 5/154 (3%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G V L +   T    A+KV+ K  +  +        E ++L+ LDHP +  LY 
Sbjct: 40  LGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYE 99
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
            FE   +  LV E   GG+L    +    K FSE  A              H   +V+RD
Sbjct: 100 FFEDKGYFYLVGEVYTGGEL--FDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRD 157
Query: 459 LKPENVLVR---DDGHIMLSDFDLSLRCAVSPTL 489
           LKPEN+L+     D +I + DF LS     S  +
Sbjct: 158 LKPENLLLESKSKDANIRIIDFGLSTHFEASKKM 191

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF- 628
           +GT  Y+APE++ G  +    D W+ G+ L+ LL G  PF G+     L  V   +  F 
Sbjct: 195 IGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFE 253
Query: 629 -PDSPATSYASRDLIRGLLVKEPQHRLGVK 657
            P     S +++DLIR +L   P  R+  +
Sbjct: 254 LPQWKKVSESAKDLIRKMLTYVPSMRISAR 283

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G     Y      T+  FA KV+ K+ L    +  +  TE  I + LD+P +   + 
Sbjct: 50  LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHG 109
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
            FE D F  +V+E C    L  L +R+  K  +E  AR+            H   V++RD
Sbjct: 110 FFEDDDFVYVVLEICRRRSLLELHKRR--KAVTEPEARYFMRQTIQGVQYLHNNRVIHRD 167
Query: 459 LKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPS 518
           LK  N+ + DD  + + DF L+            + ++ D  R+      C  P  I P 
Sbjct: 168 LKLGNLFLNDDMDVKIGDFGLA------------TKIEFDGERK---KXLCGTPNYIAPE 212
Query: 519 SVC 521
            +C
Sbjct: 213 VLC 215

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R     GT  Y+APE++  +GH   VD W+ G  L+ LL GK PF+ S  + T   +   
Sbjct: 198 RKKXLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKN 257
Query: 625 QLRFPD--SPATSYASRDLIRGLLVKEPQHRLGVKRGATE 662
           +   P   +P  S     LIR +L  +P  R  V    T+
Sbjct: 258 EYSVPRHINPVAS----ALIRRMLHADPTLRPSVAELLTD 293

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G     Y      T+  FA KV+ K+ L    +  +  TE  I + LD+P +   + 
Sbjct: 50  LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHG 109
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
            FE D F  +V+E C    L  L +R+  K  +E  AR+            H   V++RD
Sbjct: 110 FFEDDDFVYVVLEICRRRSLLELHKRR--KAVTEPEARYFMRQTIQGVQYLHNNRVIHRD 167
Query: 459 LKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPS 518
           LK  N+ + DD  + + DF L+            + ++ D  R+      C  P  I P 
Sbjct: 168 LKLGNLFLNDDMDVKIGDFGLA------------TKIEFDGERK---KDLCGTPNYIAPE 212
Query: 519 SVC 521
            +C
Sbjct: 213 VLC 215

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R     GT  Y+APE++  +GH   VD W+ G  L+ LL GK PF+ S  + T   +   
Sbjct: 198 RKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKN 257
Query: 625 QLRFPD--SPATSYASRDLIRGLLVKEPQHRLGVKRGATE 662
           +   P   +P  S     LIR +L  +P  R  V    T+
Sbjct: 258 EYSVPRHINPVAS----ALIRRMLHADPTLRPSVAELLTD 293

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 17/183 (9%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G     Y      T+  FA KV+ K+ L    +  +  TE  I + LD+P +   + 
Sbjct: 34  LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHG 93
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
            FE D F  +V+E C    L  L +R+  K  +E  AR+            H   V++RD
Sbjct: 94  FFEDDDFVYVVLEICRRRSLLELHKRR--KAVTEPEARYFMRQTIQGVQYLHNNRVIHRD 151
Query: 459 LKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPS 518
           LK  N+ + DD  + + DF L+            + ++ D  R+      C  P  I P 
Sbjct: 152 LKLGNLFLNDDMDVKIGDFGLA------------TKIEFDGERK---KDLCGTPNYIAPE 196
Query: 519 SVC 521
            +C
Sbjct: 197 VLC 199

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R     GT  Y+APE++  +GH   VD W+ G  L+ LL GK PF+ S  + T   +   
Sbjct: 182 RKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKN 241
Query: 625 QLRFPD--SPATSYASRDLIRGLLVKEPQHRLGVKRGATE 662
           +   P   +P  S     LIR +L  +P  R  V    T+
Sbjct: 242 EYSVPRHINPVAS----ALIRRMLHADPTLRPSVAELLTD 277

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 10/179 (5%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + ++  LG G  G VY ++   T    A KV+D  S    ++L     E +IL   DHP 
Sbjct: 39  WEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKS---EEELEDYMVEIDILASCDHPN 95
Query: 393 LPTLYTHFETDRFSCLVMEYCPGG--DLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
           +  L   F  +    +++E+C GG  D   L   +P    +E   +             H
Sbjct: 96  IVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERP---LTESQIQVVCKQTLDALNYLH 152
Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFC 509
              +++RDLK  N+L   DG I L+DF +S +   + T+ +  S    P    P    C
Sbjct: 153 DNKIIHRDLKAGNILFTLDGDIKLADFGVSAKN--TRTIQRRDSFIGTPYWMAPEVVMC 209

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
            +GT EYLAPEI+  +   +A D W  GI  + LL   +PF G  N+ T  N+    + +
Sbjct: 193 IMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDY 252
Query: 629 PDSPATSYA--SRDLIRGLLVKEPQHR 653
            +   +S +  + D I+ LLVK P+ R
Sbjct: 253 SEETFSSVSQLATDFIQSLLVKNPEKR 279

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL-- 387
           M  +  L+++G G  G   L + +     + +K ++ + ++S++   R ++ RE+  L  
Sbjct: 23  MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKE---REESRREVAVLAN 79
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           + HP +      FE +    +VM+YC GGDL      Q G  F E               
Sbjct: 80  MKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALK 139
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   +++RD+K +N+ +  DG + L DF ++
Sbjct: 140 HVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIA 172

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
           V   T   + + +GT  YL+PEI + + + +  D W  G  L+EL   K  F+    +  
Sbjct: 174 VLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNL 233
Query: 618 LFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
           +  ++      P S   SY  R L+  L  + P+ R
Sbjct: 234 VLKIISGSFP-PVSLHYSYDLRSLVSQLFKRNPRDR 268

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G V L+    T+   A+K + +  L       R + E   L+LL HP +  LY 
Sbjct: 17  LGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYD 76
Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRD 458
              T     +V+EY  GG+L      +  K  +E   R             H   +V+RD
Sbjct: 77  VITTPTDIVMVIEYA-GGELFDYIVEK--KRMTEDEGRRFFQQIICAIEYCHRHKIVHRD 133
Query: 459 LKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS 493
           LKPEN+L+ D+ ++ ++DF LS         +KTS
Sbjct: 134 LKPENLLLDDNLNVKIADFGLS-NIMTDGNFLKTS 167

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 17/129 (13%)
Query: 571 GTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
           G+  Y APE+I G+ + G  VD W+ GI L+ +L G+ PF           V       P
Sbjct: 169 GSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMP 228
Query: 630 DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPM 689
           D    S  ++ LIR ++V +P  R+ ++    EI++ P+F  VN         P+  RPM
Sbjct: 229 D--FLSPGAQSLIRRMIVADPMQRITIQ----EIRRDPWF-NVNL--------PDYLRPM 273
Query: 690 EAELPGKFG 698
           E E+ G + 
Sbjct: 274 E-EVQGSYA 281

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS------------------ 371
           ++ + L   +G G  G V L+   +   Y+AMKV+ K  L                    
Sbjct: 12  LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPG 71
Query: 372 -----RKKLTRAQTEREILQLLDHPFLPTLYTHFE--TDRFSCLVMEYCPGGDLHTLRQR 424
                R  + +   E  IL+ LDHP +  L    +   +    +V E    G +  +   
Sbjct: 72  GCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL 131
Query: 425 QPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +P    SE  ARF            H   +++RD+KP N+LV +DGHI ++DF +S
Sbjct: 132 KP---LSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVS 184

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 570 VGTHEYLAPEII---KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           VGT  ++APE +   +    G A+D W  G+ L+  ++G+ PF           +  Q L
Sbjct: 198 VGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQAL 257
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
            FPD P  +   +DLI  +L K P+ R+ V     EIK HP+
Sbjct: 258 EFPDQPDIAEDLKDLITRMLDKNPESRIVV----PEIKLHPW 295

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + ++  LG G  G VY ++   T    A KV+D  S    ++L     E +IL   DHP 
Sbjct: 39  WEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKS---EEELEDYMVEIDILASCDHPN 95
Query: 393 LPTLYTHFETDRFSCLVMEYCPGG--DLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
           +  L   F  +    +++E+C GG  D   L   +P    +E   +             H
Sbjct: 96  IVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERP---LTESQIQVVCKQTLDALNYLH 152
Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
              +++RDLK  N+L   DG I L+DF +S +
Sbjct: 153 DNKIIHRDLKAGNILFTLDGDIKLADFGVSAK 184

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + ++  LG G  G VY ++   T    A KV+D  S    ++L     E +IL   DHP 
Sbjct: 39  WEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKS---EEELEDYMVEIDILASCDHPN 95
Query: 393 LPTLYTHFETDRFSCLVMEYCPGG--DLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
           +  L   F  +    +++E+C GG  D   L   +P    +E   +             H
Sbjct: 96  IVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERP---LTESQIQVVCKQTLDALNYLH 152
Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
              +++RDLK  N+L   DG I L+DF +S +
Sbjct: 153 DNKIIHRDLKAGNILFTLDGDIKLADFGVSAK 184

>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3 Length = 361

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 125/347 (36%), Gaps = 100/347 (28%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL--QLLDH 390
           +  +K +G G+ G   L     T+   A+K +++ +            +REI+  + L H
Sbjct: 22  YDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDEN------VQREIINHRSLRH 75
Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
           P +        T     ++MEY  GG+L+  R    G+ FSE  ARF            H
Sbjct: 76  PNIVRFKEVILTPTHLAIIMEYASGGELYE-RICNAGR-FSEDEARFFFQQLLSGVSYCH 133
Query: 451 MLGVVYRDLKPENVLVRDDG----HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGG 506
            + + +RDLK EN L+  DG     + + DF  S          K+S L S         
Sbjct: 134 SMQICHRDLKLENTLL--DGSPAPRLKICDFGYS----------KSSVLHS--------- 172
Query: 507 SFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS 566
                                              +P+S +G P+   PE+         
Sbjct: 173 -----------------------------------QPKSTVGTPAYIAPEV--------- 188
Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKG----SGNRATLFNVV 622
                        +++ E  G   D W+ G+ L+ +L G  PF+        R T+  ++
Sbjct: 189 -------------LLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRIL 235
Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             +   PD    S     LI  + V +P  R+ +     EIK H +F
Sbjct: 236 SVKYSIPDDIRISPECCHLISRIFVADPATRISIP----EIKTHSWF 278

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 359 FAMKVMDKASLASRKKLTRAQTEREI--LQLLD-HPFLPTLYTHFETDRFSCLVMEYCPG 415
           FA+K++ K           A T++EI  L+L + HP +  L+  F     + LVME   G
Sbjct: 39  FAVKIISKR--------MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNG 90
Query: 416 GDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDG---HI 472
           G+L    + +  KHFSE  A +            H +GVV+RDLKPEN+L  D+     I
Sbjct: 91  GEL--FERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEI 148
Query: 473 MLSDF 477
            + DF
Sbjct: 149 KIIDF 153

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS 631
           T  Y APE++   G+  + D W+ G+ L+ +L G+ PF+      T  + V    +    
Sbjct: 172 TLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKG 231
Query: 632 ---------PATSYASRDLIRGLLVKEPQHRL 654
                       S  ++DLI+GLL  +P  RL
Sbjct: 232 DFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRL 263

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 65
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 124 IGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 571 GTHEYLAPEIIKGE------GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           GT  YLAPEI+K        G+G  VD W  G+ L  LL G  PF        L  ++  
Sbjct: 261 GTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEG 320
Query: 625 QLRF--PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
           Q +F  P+    S   +DLI  LL  +P+ RL     A +  QHPFFE
Sbjct: 321 QYQFSSPEWDDRSSTVKDLISRLLQVDPEARL----TAEQALQHPFFE 364

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EIXINKMLNHE 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EIXINKMLNHE 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EIXINKMLNHE 65
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 124 IGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F +   LG G    VY  +   T+  +A+KV+ K      KK+ R  TE  +L  L HP 
Sbjct: 55  FEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV---DKKIVR--TEIGVLLRLSHPN 109
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +  L   FET     LV+E   GG+L   R  + G ++SE  A              H  
Sbjct: 110 IIKLKEIFETPTEISLVLELVTGGELFD-RIVEKG-YYSERDAADAVKQILEAVAYLHEN 167
Query: 453 GVVYRDLKPENVLVRD---DGHIMLSDFDLSLRCAVSPTLIKT 492
           G+V+RDLKPEN+L      D  + ++DF LS +      L+KT
Sbjct: 168 GIVHRDLKPENLLYATPAPDAPLKIADFGLS-KIVEHQVLMKT 209

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 9/142 (6%)
Query: 533 PQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDW 592
           P+     T  P + L +    L ++V      +++   GT  Y APEI++G  +G  VD 
Sbjct: 176 PENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVC--GTPGYCAPEILRGCAYGPEVDM 233
Query: 593 WTFGIFLHELLYGKTPFKGS-GNRATLFNVVGQQLRF--PDSPATSYASRDLIRGLLVKE 649
           W+ GI  + LL G  PF    G++     ++  +  F  P     S  ++DL+R L+V +
Sbjct: 234 WSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLD 293
Query: 650 PQHRLGVKRGATEIKQHPFFEG 671
           P+ RL   +      QHP+  G
Sbjct: 294 PKKRLTTFQAL----QHPWVTG 311

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 65
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 124 IGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 65
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 124 IGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 65
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 124 IGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 7/171 (4%)
Query: 323 ARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTER 382
           A D +L    + L + +G G    V       T   FA+K++D A   S   L+    +R
Sbjct: 16  ADDDVLFEDVYELCEVIGKGAFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKR 75
Query: 383 E--ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFX 438
           E  I  +L HP +  L   + +D    +V E+  G DL    +++   G  +SE  A   
Sbjct: 76  EASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHY 135
Query: 439 XXXXXXXXXXXHMLGVVYRDLKPENVLV---RDDGHIMLSDFDLSLRCAVS 486
                      H   +++RD+KPENVL+    +   + L DF ++++   S
Sbjct: 136 MRQILEALRYCHDNNIIHRDVKPENVLLASKENSAPVKLGDFGVAIQLGES 186

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
           VGT  ++APE++K E +G  VD W  G+ L  LL G  PF G+  R     + G+    P
Sbjct: 194 VGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERLFEGIIKGKYKMNP 253
Query: 630 DSPA-TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
              +  S +++DL+R +L+ +P  R+ V     E   HP+ +
Sbjct: 254 RQWSHISESAKDLVRRMLMLDPAERITV----YEALNHPWLK 291

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 8/151 (5%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  ++ LG G    V+L +   T   FA+K + K+       L   + E  +L+ + H  
Sbjct: 11  FIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSL---ENEIAVLKKIKHEN 67
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           + TL   +E+     LVM+   GG+L   R  + G  ++E  A              H  
Sbjct: 68  IVTLEDIYESTTHYYLVMQLVSGGELFD-RILERGV-YTEKDASLVIQQVLSAVKYLHEN 125
Query: 453 GVVYRDLKPENVLV---RDDGHIMLSDFDLS 480
           G+V+RDLKPEN+L     ++  IM++DF LS
Sbjct: 126 GIVHRDLKPENLLYLTPEENSKIMITDFGLS 156

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT  Y+APE++  + +  AVD W+ G+  + LL G  PF      + LF  + +     +
Sbjct: 169 GTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFY-EETESKLFEKIKEGYYEFE 227
Query: 631 SPA---TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTP 682
           SP     S +++D I  LL K+P  R   ++  +    HP+ +G N AL R   P
Sbjct: 228 SPFWDDISESAKDFICHLLEKDPNERYTCEKALS----HPWIDG-NTALHRDIYP 277

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
            GT E+ APE+ +G+  G   D W+ G+  + LL G +PF G  +  TL NV        
Sbjct: 317 TGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMD 376
Query: 630 DSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           DS     S   +D IR LL+ +P  R+ + +      +HP+ 
Sbjct: 377 DSAFSGISEDGKDFIRKLLLADPNTRMTIHQAL----EHPWL 414

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA---SRKK--LTRAQTEREILQLLDHP 391
           K LG G  G V L+    T    A+K++ K   A   +R+       +TE EIL+ L+HP
Sbjct: 22  KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHP 81
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +  +   F+ + +  +V+E   GG+L    +    K   E   +             H 
Sbjct: 82  CIIKIKNFFDAEDYY-IVLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYLHE 138
Query: 452 LGVVYRDLKPENVLV---RDDGHIMLSDF 477
            G+++RDLKPENVL+    +D  I ++DF
Sbjct: 139 NGIIHRDLKPENVLLSSQEEDCLIKITDF 167

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 556 ELVAEPTAARSMSFVGTHEYLAPEI---IKGEGHGSAVDWWTFGIFLHELLYGKTPFKGS 612
           +++ E +  R++   GT  YLAPE+   +   G+  AVD W+ G+ L   L G  PF   
Sbjct: 171 KILGETSLMRTLC--GTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH 228
Query: 613 GNRATLFNVV--GQQLRFPDSPA-TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             + +L + +  G+    P+  A  S  + DL++ LLV +P+ R   +    E  +HP+ 
Sbjct: 229 RTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE----EALRHPWL 284
Query: 670 E 670
           +
Sbjct: 285 Q 285

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA---SRKK--LTRAQTEREILQLLDHP 391
           K LG G  G V L+    T    A+K++ K   A   +R+       +TE EIL+ L+HP
Sbjct: 16  KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHP 75
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +  +   F+ + +  +V+E   GG+L    +    K   E   +             H 
Sbjct: 76  CIIKIKNFFDAEDYY-IVLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYLHE 132
Query: 452 LGVVYRDLKPENVLV---RDDGHIMLSDF 477
            G+++RDLKPENVL+    +D  I ++DF
Sbjct: 133 NGIIHRDLKPENVLLSSQEEDCLIKITDF 161

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 556 ELVAEPTAARSMSFVGTHEYLAPEI---IKGEGHGSAVDWWTFGIFLHELLYGKTPFKGS 612
           +++ E +  R++   GT  YLAPE+   +   G+  AVD W+ G+ L   L G  PF   
Sbjct: 165 KILGETSLMRTLC--GTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH 222
Query: 613 GNRATLFNVV--GQQLRFPDSPA-TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             + +L + +  G+    P+  A  S  + DL++ LLV +P+ R   +    E  +HP+ 
Sbjct: 223 RTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE----EALRHPWL 278
Query: 670 E 670
           +
Sbjct: 279 Q 279

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA---SRKK--LTRAQTEREILQLLDHP 391
           K LG G  G V L+    T    A+K++ K   A   +R+       +TE EIL+ L+HP
Sbjct: 16  KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHP 75
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +  +   F+ + +  +V+E   GG+L    +    K   E   +             H 
Sbjct: 76  CIIKIKNFFDAEDYY-IVLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYLHE 132
Query: 452 LGVVYRDLKPENVLV---RDDGHIMLSDF 477
            G+++RDLKPENVL+    +D  I ++DF
Sbjct: 133 NGIIHRDLKPENVLLSSQEEDCLIKITDF 161

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 556 ELVAEPTAARSMSFVGTHEYLAPEI---IKGEGHGSAVDWWTFGIFLHELLYGKTPFKGS 612
           +++ E +  R++   GT  YLAPE+   +   G+  AVD W+ G+ L   L G  PF   
Sbjct: 165 KILGETSLMRTLC--GTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH 222
Query: 613 GNRATLFNVV--GQQLRFPDSPA-TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             + +L + +  G+    P+  A  S  + DL++ LLV +P+ R   +    E  +HP+ 
Sbjct: 223 RTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE----EALRHPWL 278
Query: 670 E 670
           +
Sbjct: 279 Q 279

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--ASRKKLTRAQTEREILQLLDH 390
           + L   +G G  G V ++  + TR   A+K+M+K  +   + K + R +TE  +++ L H
Sbjct: 28  YHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHH 87
Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL 418
           P +  LY  +E +++ CLVME C GG L
Sbjct: 88  PNIARLYEVYEDEQYICLVMELCHGGHL 115

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 571 GTHEYLAPEIIK--GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           GT  ++APE++    E +G   D W+ G+ LH LL G  PF G  +  T+  V+ ++L F
Sbjct: 236 GTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCF 295
Query: 629 --PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
             P+    S  +RDL+  LL +    R    R      QHP+
Sbjct: 296 ENPNYNVLSPLARDLLSNLLNRNVDERFDAMRAL----QHPW 333

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 7   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 63
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 64  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 121
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 122 IGITHRDIKPENLLLDERDNLKISDFGLA 150

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 8   WDLVQTLGEGAAGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA---SRKK--LTRAQTEREILQLLDHP 391
           K LG G  G V L+    T    A+K++ K   A   +R+       +TE EIL+ L+HP
Sbjct: 16  KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHP 75
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +  +   F+ + +  +V+E   GG+L    +    K   E   +             H 
Sbjct: 76  CIIKIKNFFDAEDYY-IVLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYLHE 132
Query: 452 LGVVYRDLKPENVLV---RDDGHIMLSDF 477
            G+++RDLKPENVL+    +D  I ++DF
Sbjct: 133 NGIIHRDLKPENVLLSSQEEDCLIKITDF 161

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 556 ELVAEPTAARSMSFVGTHEYLAPEI---IKGEGHGSAVDWWTFGIFLHELLYGKTPFKGS 612
           +++ E +  R++   GT  YLAPE+   +   G+  AVD W+ G+ L   L G  PF   
Sbjct: 165 KILGETSLMRTLC--GTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH 222
Query: 613 GNRATLFNVV--GQQLRFPDSPA-TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             + +L + +  G+    P+  A  S  + DL++ LLV +P+ R   +    E  +HP+ 
Sbjct: 223 RTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE----EALRHPWL 278
Query: 670 E 670
           +
Sbjct: 279 Q 279

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 568 SFVGTHEYLAPEIIKGE------GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           S  GT  YLAPEII+        G+G  VD W+ G+ ++ LL G  PF        L  +
Sbjct: 182 SVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMI 241
Query: 622 VGQQLRF--PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
           +    +F  P+    S   +DL+   LV +PQ R      A E   HPFF+
Sbjct: 242 MSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRY----TAEEALAHPFFQ 288

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA---SRKK--LTRAQTEREILQLLDHP 391
           K LG G  G V L+    T    A+K++ K   A   +R+       +TE EIL+ L+HP
Sbjct: 15  KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHP 74
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +  +   F+ + +  +V+E   GG+L    +    K   E   +             H 
Sbjct: 75  CIIKIKNFFDAEDYY-IVLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYLHE 131
Query: 452 LGVVYRDLKPENVLV---RDDGHIMLSDF 477
            G+++RDLKPENVL+    +D  I ++DF
Sbjct: 132 NGIIHRDLKPENVLLSSQEEDCLIKITDF 160

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 556 ELVAEPTAARSMSFVGTHEYLAPEI---IKGEGHGSAVDWWTFGIFLHELLYGKTPFKGS 612
           +++ E +  R++   GT  YLAPE+   +   G+  AVD W+ G+ L   L G  PF   
Sbjct: 164 KILGETSLMRTLC--GTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH 221
Query: 613 GNRATLFNVV--GQQLRFPDSPA-TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             + +L + +  G+    P+  A  S  + DL++ LLV +P+ R   +    E  +HP+ 
Sbjct: 222 RTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE----EALRHPWL 277
Query: 670 E 670
           +
Sbjct: 278 Q 278

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
            GT E+ APE+ +G+  G   D W+ G+  + LL G +PF G  +  TL NV        
Sbjct: 211 TGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMD 270
Query: 630 DSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           DS     S   +D IR LL+ +P  R+ + +      +HP+ 
Sbjct: 271 DSAFSGISEDGKDFIRKLLLADPNTRMTIHQAL----EHPWL 308

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 10/154 (6%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR--KKLTRAQTEREILQLLDH 390
           ++L + LG G    V       T   +A K+++   L++R  +KL R   E  I +LL H
Sbjct: 6   YQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLER---EARICRLLKH 62
Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
           P +  L+     + F  LV +   GG+L         +++SE  A              H
Sbjct: 63  PNIVRLHDSISEEGFHYLVFDLVTGGEL--FEDIVAREYYSEADASHCIQQILESVNHCH 120
Query: 451 MLGVVYRDLKPENVLVRDDGH---IMLSDFDLSL 481
           + G+V+RDLKPEN+L+        + L+DF L++
Sbjct: 121 LNGIVHRDLKPENLLLASKSKGAAVKLADFGLAI 154

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT  YL+PE+++ + +G  VD W  G+ L+ LL G  PF           +      F
Sbjct: 166 FAGTPGYLSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDF 225
Query: 629 --PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP 686
             P+    +  ++DLI  +L   P  R+     A+E  +HP      W   R +    + 
Sbjct: 226 PSPEWDTVTPEAKDLINKMLTINPAKRI----TASEALKHP------WICQRSTVASMMH 275
Query: 687 RPMEAELPGKFGA 699
           R    +   KF A
Sbjct: 276 RQETVDCLKKFNA 288

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 65
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 124 IGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 65  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 122
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 123 IGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I ++L+H 
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINKMLNHE 65
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 124 IGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 571 GTHEYLAPEIIKGE------GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           GT  YLAPEII+        G+G  VD W+ G+ ++ LL G  PF        L  ++  
Sbjct: 172 GTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSG 231
Query: 625 QLRF--PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
             +F  P+    S   +DL+   LV +PQ R      A E   HPFF+
Sbjct: 232 NYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRY----TAEEALAHPFFQ 275

>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain Length = 316

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 33/141 (23%)
Query: 571 GTHEYLAPEIIKGEGHGSAV-----DWWTFGIFLHELLYGKTPFKGS------------- 612
           G+ EY+APE+++     +++     D W+ G+ L+ LL G  PF G              
Sbjct: 183 GSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEAC 242
Query: 613 -GNRATLFNVVGQ-QLRFPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
              +  LF  + + +  FPD      S A++DLI  LLV++ + RL     A ++ QHP+
Sbjct: 243 PACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRL----SAAQVLQHPW 298
Query: 669 FEGVNWALIRCSTPPEVPRPM 689
            +G       C+    +P PM
Sbjct: 299 VQG-------CAPENTLPTPM 312

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 571 GTHEYLAPEIIKGE------GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           GT  YLAPEII+        G+G  VD W+ G+ ++ LL G  PF        L  ++  
Sbjct: 185 GTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSG 244
Query: 625 QLRF--PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
             +F  P+    S   +DL+   LV +PQ R      A E   HPFF+
Sbjct: 245 NYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRY----TAEEALAHPFFQ 288

>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g Length = 316

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 33/141 (23%)
Query: 571 GTHEYLAPEIIKGEGHGSAV-----DWWTFGIFLHELLYGKTPFKGS------------- 612
           G+ EY+APE+++     +++     D W+ G+ L+ LL G  PF G              
Sbjct: 183 GSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEAC 242
Query: 613 -GNRATLFNVVGQ-QLRFPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
              +  LF  + + +  FPD      S A++DLI  LLV++ + RL     A ++ QHP+
Sbjct: 243 PACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRL----SAAQVLQHPW 298
Query: 669 FEGVNWALIRCSTPPEVPRPM 689
            +G       C+    +P PM
Sbjct: 299 VQG-------CAPENTLPTPM 312

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 10/154 (6%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR--KKLTRAQTEREILQLLDH 390
           ++L + LG G    V       T   +A K+++   L++R  +KL R   E  I +LL H
Sbjct: 6   YQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLER---EARICRLLKH 62
Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
           P +  L+     + F  LV +   GG+L         +++SE  A              H
Sbjct: 63  PNIVRLHDSISEEGFHYLVFDLVTGGEL--FEDIVAREYYSEADASHCIQQILESVNHCH 120
Query: 451 MLGVVYRDLKPENVLVRDDGH---IMLSDFDLSL 481
           + G+V+RDLKPEN+L+        + L+DF L++
Sbjct: 121 LNGIVHRDLKPENLLLASKSKGAAVKLADFGLAI 154

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT  YL+PE+++ + +G  VD W  G+ L+ LL G  PF           +      F
Sbjct: 166 FAGTPGYLSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDF 225
Query: 629 --PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP 686
             P+    +  ++DLI  +L   P  R+     A+E  +HP      W   R +    + 
Sbjct: 226 PSPEWDTVTPEAKDLINKMLTINPAKRI----TASEALKHP------WICQRSTVASMMH 275
Query: 687 RPMEAELPGKFGA 699
           R    +   KF A
Sbjct: 276 RQETVDCLKKFNA 288

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           + L++ LG G  G V L+    T    A+K++D K ++   + + +   E  I  +L+H 
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKK---EICINAMLNHE 65
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +   Y H        L +EYC GG+L    + +P     E  A+             H 
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAGVVYLHG 123
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 124 IGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
           VGT  ++APE++K E +G  VD W  G+ L  LL G  PF G+  R     + G+    P
Sbjct: 196 VGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERLFEGIIKGKYKMNP 255
Query: 630 DSPA-TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
              +  S +++DL+R +L+ +P  R+ V     E   HP+ +
Sbjct: 256 RQWSHISESAKDLVRRMLMLDPAERITV----YEALNHPWLK 293

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
           VGT  ++APE++K E +G  VD W  G+ L  LL G  PF G+  R     + G+    P
Sbjct: 194 VGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERLFEGIIKGKYKMNP 253
Query: 630 DSPA-TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
              +  S +++DL+R +L+ +P  R+ V     E   HP+ +
Sbjct: 254 RQWSHISESAKDLVRRMLMLDPAERITV----YEALNHPWLK 291

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA---SRKK--LTRAQTEREILQLLDHP 391
           K LG G  G V L+    T    A++++ K   A   +R+       +TE EIL+ L+HP
Sbjct: 141 KTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHP 200
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +  +   F+ + +  +V+E   GG+L    +    K   E   +             H 
Sbjct: 201 CIIKIKNFFDAEDYY-IVLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYLHE 257
Query: 452 LGVVYRDLKPENVLV---RDDGHIMLSDF 477
            G+++RDLKPENVL+    +D  I ++DF
Sbjct: 258 NGIIHRDLKPENVLLSSQEEDCLIKITDF 286

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 556 ELVAEPTAARSMSFVGTHEYLAPEI---IKGEGHGSAVDWWTFGIFLHELLYGKTPFKGS 612
           +++ E +  R++   GT  YLAPE+   +   G+  AVD W+ G+ L   L G  PF   
Sbjct: 290 KILGETSLMRTLC--GTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH 347
Query: 613 GNRATLFNVV--GQQLRFPDSPA-TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             + +L + +  G+    P+  A  S  + DL++ LLV +P+ R   +    E  +HP+ 
Sbjct: 348 RTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE----EALRHPWL 403
Query: 670 E 670
           +
Sbjct: 404 Q 404

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
            E    R  +  GT  Y+APE++  +GH   VD W+ G  ++ LL GK PF+ S  + T 
Sbjct: 171 VEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETY 230
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
             +   +   P       AS  LI+ +L  +P  R
Sbjct: 231 LRIKKNEYSIPKHINPVAAS--LIQKMLQTDPTAR 263

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
            E    R  +  GT  Y+APE++  +GH   VD W+ G  ++ LL GK PF+ S  + T 
Sbjct: 167 VEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETY 226
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
             +   +   P       AS  LI+ +L  +P  R
Sbjct: 227 LRIKKNEYSIPKHINPVAAS--LIQKMLQTDPTAR 259

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
            E    R  +  GT  Y+APE++  +GH   VD W+ G  ++ LL GK PF+ S  + T 
Sbjct: 167 VEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETY 226
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
             +   +   P       AS  LI+ +L  +P  R
Sbjct: 227 LRIKKNEYSIPKHINPVAAS--LIQKMLQTDPTAR 259

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA---SRKK--LTRAQTEREILQLLDHP 391
           K LG G  G V L+    T    A++++ K   A   +R+       +TE EIL+ L+HP
Sbjct: 155 KTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHP 214
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +  +   F+ + +  +V+E   GG+L    +    K   E   +             H 
Sbjct: 215 CIIKIKNFFDAEDYY-IVLELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYLHE 271
Query: 452 LGVVYRDLKPENVLV---RDDGHIMLSDF 477
            G+++RDLKPENVL+    +D  I ++DF
Sbjct: 272 NGIIHRDLKPENVLLSSQEEDCLIKITDF 300

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 556 ELVAEPTAARSMSFVGTHEYLAPEI---IKGEGHGSAVDWWTFGIFLHELLYGKTPFKGS 612
           +++ E +  R++   GT  YLAPE+   +   G+  AVD W+ G+ L   L G  PF   
Sbjct: 304 KILGETSLMRTLC--GTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH 361
Query: 613 GNRATLFNVV--GQQLRFPDSPA-TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             + +L + +  G+    P+  A  S  + DL++ LLV +P+ R   +    E  +HP+ 
Sbjct: 362 RTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE----EALRHPWL 417
Query: 670 E 670
           +
Sbjct: 418 Q 418

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 5/168 (2%)
Query: 314 RWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASR 372
           R +A L  + + G L    F  +  LG G+ G V+      +    A K++  +   A R
Sbjct: 51  RLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIR 110
Query: 373 KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSE 432
            ++ R   E ++L   + P++   Y  F +D    + ME+  GG L  + ++  G+   +
Sbjct: 111 NQIIR---ELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPEQ 166
Query: 433 YAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +                 +++RD+KP N+LV   G I L DF +S
Sbjct: 167 ILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 214

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
            E    R     GT  Y+APE++  +GH   VD W+ G  ++ LL GK PF+ S  + T 
Sbjct: 191 VEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETY 250
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
             +   +   P       AS  LI+ +L  +P  R
Sbjct: 251 LRIKKNEYSIPKHINPVAAS--LIQKMLQTDPTAR 283

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
            E    R     GT  Y+APE++  +GH   VD W+ G  ++ LL GK PF+ S  + T 
Sbjct: 189 VEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETY 248
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
             +   +   P       AS  LI+ +L  +P  R
Sbjct: 249 LRIKKNEYSIPKHINPVAAS--LIQKMLQTDPTAR 281

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F +L++LG G  GSVY +    T    A+K      +     L     E  I+Q  D P 
Sbjct: 31  FDVLEKLGEGSYGSVYKAIHKETGQIVAIK-----QVPVESDLQEIIKEISIMQQCDSPH 85
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +   Y  +  +    +VMEYC  G +  +  R   K  +E                 H +
Sbjct: 86  VVKYYGSYFKNTDLWIVMEYCGAGSVSDII-RLRNKTLTEDEIATILQSTLKGLEYLHFM 144
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             ++RD+K  N+L+  +GH  L+DF ++
Sbjct: 145 RKIHRDIKAGNILLNTEGHAKLADFGVA 172

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
           A+    +GT  ++APE+I+  G+    D W+ GI   E+  GK P+        +F +  
Sbjct: 180 AKRNXVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPT 239
Query: 624 Q---QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
                 R P+  + ++   D ++  LVK P+ R      AT++ QHPF
Sbjct: 240 NPPPTFRKPELWSDNFT--DFVKQCLVKSPEQR----ATATQLLQHPF 281

>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle Protein Titin Length = 321

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 574 EYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSP- 632
           EY APE+ + +   +A D W+ G  ++ LL G  PF    N+  + N++  +  F +   
Sbjct: 168 EYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAF 227
Query: 633 -ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF----EGVNWALIR 678
              S  + D +  LLVKE + R+     A+E  QHP+     E V+  +IR
Sbjct: 228 KEISIEAMDFVDRLLVKERKSRM----TASEALQHPWLKQKIERVSTKVIR 274

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
            E    R     GT  Y+APE++  +GH   VD W+ G  ++ LL GK PF+ S  + T 
Sbjct: 165 VEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETY 224
Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
             +   +   P       AS  LI+ +L  +P  R
Sbjct: 225 LRIKKNEYSIPKHINPVAAS--LIQKMLQTDPTAR 257

>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase Domain Phosphorylated On Ser172 Length = 319

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 331 SHFRLLKR-LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +H  LL   LG G   +V+      T   FA+KV +  S    + +     E E+L+ L+
Sbjct: 8   NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL--RPVDVQMREFEVLKKLN 65
Query: 390 HPFLPTLYTHFE--TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           H  +  L+   E  T R   L+ME+CP G L+T+ + +P   +    + F          
Sbjct: 66  HKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLE-EPSNAYGLPESEFLIVLRDVVGG 124
Query: 448 XXHML--GVVYRDLKPENVL--VRDDGHIM--LSDF 477
             H+   G+V+R++KP N++  + +DG  +  L+DF
Sbjct: 125 MNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDF 160

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           ++ + + LG G    V      +T   FA K+++   L++R    + + E  I + L HP
Sbjct: 30  NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARD-FQKLEREARICRKLQHP 88
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +  L+   + + F  LV +   GG+L         + +SE  A              H 
Sbjct: 89  NIVRLHDSIQEESFHYLVFDLVTGGEL--FEDIVAREFYSEADASHCIQQILESIAYCHS 146
Query: 452 LGVVYRDLKPENVLVRDDGH---IMLSDFDLSL 481
            G+V+R+LKPEN+L+        + L+DF L++
Sbjct: 147 NGIVHRNLKPENLLLASKAKGAAVKLADFGLAI 179

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT  YL+PE++K + +   VD W  G+ L+ LL G  PF           +      +
Sbjct: 190 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 249
Query: 629 --PDSPATSYASRDLIRGLLVKEPQHRL 654
             P+    +  ++ LI  +L   P+ R+
Sbjct: 250 PSPEWDTVTPEAKSLIDSMLTVNPKKRI 277

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 313 PRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR 372
           P+++   A+R   G   +++FR+ K++G G    VY +         A+K +    L   
Sbjct: 14  PQFQPQKALRPDMGYNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDA 73
Query: 373 KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL-----HTLRQRQ-- 425
           K       E ++L+ L+HP +   Y  F  D    +V+E    GDL     H  +Q++  
Sbjct: 74  KARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLI 133
Query: 426 PGKHFSEYAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
           P +   +Y  +             H   V++RD+KP NV +   G + L D  L
Sbjct: 134 PERTVWKYFVQL-----CSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGL 182

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           ++ TAA S+  VGT  Y++PE I   G+    D W+ G  L+E+   ++PF   G++  L
Sbjct: 188 SKTTAAHSL--VGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPF--YGDKMNL 243
Query: 619 FNVVG--QQLRFPDSPATSYAS--RDLIRGLLVKEPQHR 653
           +++    +Q  +P  P+  Y+   R L+   +  +P+ R
Sbjct: 244 YSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKR 282

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
             F GT  YL+PE+++ E +G  VD W  G+ L+ LL G  PF           +     
Sbjct: 164 FGFAGTPGYLSPEVLRKEAYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAY 223
Query: 627 RF--PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPE 684
            F  P+    +  +++LI  +L   P  R+     A E  +HP      W   R +    
Sbjct: 224 DFPSPEWDTVTPEAKNLINQMLTINPAKRI----TAHEALKHP------WVCQRSTVASM 273
Query: 685 VPRPMEAELPGKFGA 699
           + R    E   KF A
Sbjct: 274 MHRQETVECLKKFNA 288

>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human Tbk1 Kinase- Uld Domain Length = 396

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 331 SHFRLLKR-LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +H  LL   LG G   +V+      T   FA+KV +  S    + +     E E+L+ L+
Sbjct: 8   NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL--RPVDVQMREFEVLKKLN 65
Query: 390 HPFLPTLYTHFE--TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           H  +  L+   E  T R   L+ME+CP G L+T+ + +P   +    + F          
Sbjct: 66  HKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLE-EPSNAYGLPESEFLIVLRDVVGG 124
Query: 448 XXHML--GVVYRDLKPENVL--VRDDGHIM--LSDF 477
             H+   G+V+R++KP N++  + +DG  +  L+DF
Sbjct: 125 MNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDF 160

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           MS  G + ++APE+I+        D W++G+ L ELL G+ PF+G    A  + V   +L
Sbjct: 172 MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKL 231
Query: 627 RFP 629
             P
Sbjct: 232 ALP 234

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR--KKLTRAQTER 382
           + +   S ++L + LG G    V           +A K+++   L++R  +KL R   E 
Sbjct: 16  ENLYFQSMYQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLER---EA 72
Query: 383 EILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXX 442
            I +LL HP +  L+     +    L+ +   GG+L         +++SE  A       
Sbjct: 73  RICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGEL--FEDIVAREYYSEADASHCIQQI 130
Query: 443 XXXXXXXHMLGVVYRDLKPENVLVRDD---GHIMLSDFDLSL 481
                  H +GVV+RDLKPEN+L+        + L+DF L++
Sbjct: 131 LEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAI 172

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
             F GT  YL+PE+++ + +G  VD W  G+ L+ LL G  PF           +     
Sbjct: 182 FGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAY 241
Query: 627 RF--PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            F  P+    +  ++DLI  +L   P  R+     A E  +HP+ 
Sbjct: 242 DFPSPEWDTVTPEAKDLINKMLTINPSKRI----TAAEALKHPWI 282

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 5/168 (2%)
Query: 314 RWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASR 372
           R +A L  + + G L    F  +  LG G+ G V+      +    A K++  +   A R
Sbjct: 16  RLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIR 75
Query: 373 KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSE 432
            ++ R   E ++L   + P++   Y  F +D    + ME+  GG L  + ++  G+   +
Sbjct: 76  NQIIR---ELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK-AGRIPEQ 131
Query: 433 YAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +                 +++RD+KP N+LV   G I L DF +S
Sbjct: 132 ILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 179

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           ++ + + LG G    V      +T   FA K+++   L++R    + + E  I + L HP
Sbjct: 7   NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARD-FQKLEREARICRKLQHP 65
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +  L+   + + F  LV +   GG+L         + +SE  A              H 
Sbjct: 66  NIVRLHDSIQEESFHYLVFDLVTGGEL--FEDIVAREFYSEADASHCIQQILESIAYCHS 123
Query: 452 LGVVYRDLKPENVLVRDDGH---IMLSDFDLSL 481
            G+V+R+LKPEN+L+        + L+DF L++
Sbjct: 124 NGIVHRNLKPENLLLASKAKGAAVKLADFGLAI 156

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT  YL+PE++K + +   VD W  G+ L+ LL G  PF           +      +
Sbjct: 167 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 226
Query: 629 --PDSPATSYASRDLIRGLLVKEPQHRL 654
             P+    +  ++ LI  +L   P+ R+
Sbjct: 227 PSPEWDTVTPEAKSLIDSMLTVNPKKRI 254

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           ++ + + LG G    V      +T   FA K+++   L++R    + + E  I + L HP
Sbjct: 6   NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARD-FQKLEREARICRKLQHP 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +  L+   + + F  LV +   GG+L         + +SE  A              H 
Sbjct: 65  NIVRLHDSIQEESFHYLVFDLVTGGEL--FEDIVAREFYSEADASHCIQQILESIAYCHS 122
Query: 452 LGVVYRDLKPENVLVRDDGH---IMLSDFDLSL 481
            G+V+R+LKPEN+L+        + L+DF L++
Sbjct: 123 NGIVHRNLKPENLLLASKAKGAAVKLADFGLAI 155

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT  YL+PE++K + +   VD W  G+ L+ LL G  PF           +      +
Sbjct: 166 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 225
Query: 629 --PDSPATSYASRDLIRGLLVKEPQHRL 654
             P+    +  ++ LI  +L   P+ R+
Sbjct: 226 PSPEWDTVTPEAKSLIDSMLTVNPKKRI 253

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           ++ + + LG G    V      +T   FA K+++   L++R    + + E  I + L HP
Sbjct: 7   NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARD-FQKLEREARICRKLQHP 65
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
            +  L+   + + F  LV +   GG+L         + +SE  A              H 
Sbjct: 66  NIVRLHDSIQEESFHYLVFDLVTGGEL--FEDIVAREFYSEADASHCIQQILESIAYCHS 123
Query: 452 LGVVYRDLKPENVLVRDDGH---IMLSDFDLSL 481
            G+V+R+LKPEN+L+        + L+DF L++
Sbjct: 124 NGIVHRNLKPENLLLASKAKGAAVKLADFGLAI 156

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT  YL+PE++K + +   VD W  G+ L+ LL G  PF           +      +
Sbjct: 167 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 226
Query: 629 --PDSPATSYASRDLIRGLLVKEPQHRL 654
             P+    +  ++ LI  +L   P+ R+
Sbjct: 227 PSPEWDTVTPEAKSLIDSMLTVNPKKRI 254

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 15/187 (8%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L+R+G G  G V+    + T+   A+K++D             Q E  +L   D  +
Sbjct: 25  FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEI--EDIQQEITVLSQCDSSY 82
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +   Y  +       ++MEY  GG    L +  P   F E+                H  
Sbjct: 83  VTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGP---FDEFQIATMLKEILKGLDYLHSE 139
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQP 512
             ++RD+K  NVL+ + G + L+DF ++    ++ T IK ++    P        F + P
Sbjct: 140 KKIHRDIKAANVLLSEQGDVKLADFGVA--GQLTDTQIKRNTFVGTP--------FWMAP 189
Query: 513 ACIEPSS 519
             I+ S+
Sbjct: 190 EVIQQSA 196

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 63/161 (39%), Gaps = 23/161 (14%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD--- 389
           F L++ +G G  G VY      T    A+KVMD               E EI Q ++   
Sbjct: 26  FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD----------VTGDEEEEIKQEINMLK 75
Query: 390 ----HPFLPTLYTHF------ETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXX 439
               H  + T Y  F        D    LVME+C  G +  L +   G    E    +  
Sbjct: 76  KYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYIC 135
Query: 440 XXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                     H   V++RD+K +NVL+ ++  + L DF +S
Sbjct: 136 REILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVS 176

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR--KKLTRAQTEREILQLLDH 390
           ++L + LG G    V      +    +A K+++   L++R  +KL R   E  I +LL H
Sbjct: 33  YQLFEELGKGAFSVVRRCVKKTPTQEYAAKIINTKKLSARDHQKLER---EARICRLLKH 89
Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
           P +  L+     + F  LV +   GG+L         +++SE  A              H
Sbjct: 90  PNIVRLHDSISEEGFHYLVFDLVTGGEL--FEDIVAREYYSEADASHCIHQILESVNHIH 147
Query: 451 MLGVVYRDLKPENVLVRDD---GHIMLSDFDLSL 481
              +V+RDLKPEN+L+        + L+DF L++
Sbjct: 148 QHDIVHRDLKPENLLLASKCKGAAVKLADFGLAI 181

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
             F GT  YL+PE+++ + +G  VD W  G+ L+ LL G  PF           +     
Sbjct: 191 FGFAGTPGYLSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAY 250
Query: 627 RF--PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPE 684
            F  P+    +  +++LI  +L   P  R+     A +  +HP      W   R +    
Sbjct: 251 DFPSPEWDTVTPEAKNLINQMLTINPAKRI----TADQALKHP------WVCQRSTVASM 300
Query: 685 VPRPMEAELPGKFGA 699
           + R    E   KF A
Sbjct: 301 MHRQETVECLRKFNA 315

>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With Atp Length = 342

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 24/139 (17%)
Query: 546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHG-----------SAVDWWT 594
           + G+ +   P+     T+    S VGT  Y+ PE IK                   D W+
Sbjct: 197 DFGIANQMQPD----TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 252
Query: 595 FGIFLHELLYGKTPFKGSGNRATLFNVV---GQQLRFPDSPATSYASRDLIRGLLVKEPQ 651
            G  L+ + YGKTPF+   N+ +  + +     ++ FPD P      +D+++  L ++P+
Sbjct: 253 LGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL--QDVLKCCLKRDPK 310
Query: 652 HRLGVKRGATEIKQHPFFE 670
            R+ +     E+  HP+ +
Sbjct: 311 QRISI----PELLAHPYVQ 325

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKG--SGNRATLFNVVGQ---QL 626
           T  ++APE++K +G+    D W+ GI L+ +L G TPF    S     +   +G     L
Sbjct: 188 TANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTL 247
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
              +    S  ++DL+  +L  +P  RL  K    ++ QHP+
Sbjct: 248 SGGNWNTVSETAKDLVSKMLHVDPHQRLTAK----QVLQHPW 285

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKG--SGNRATLFNVVGQ---QL 626
           T  ++APE++K +G+    D W+ GI L+ +L G TPF    S     +   +G     L
Sbjct: 188 TANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTL 247
Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
              +    S  ++DL+  +L  +P  RL  K    ++ QHP+
Sbjct: 248 SGGNWNTVSETAKDLVSKMLHVDPHQRLTAK----QVLQHPW 285

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 5/168 (2%)
Query: 314 RWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASR 372
           R +A L  + + G L    F  +  LG G+ G V+      +    A K++  +   A R
Sbjct: 8   RLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIR 67
Query: 373 KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSE 432
            ++ R   E ++L   + P++   Y  F +D    + ME+  GG L  + ++  G+   +
Sbjct: 68  NQIIR---ELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK-AGRIPEQ 123
Query: 433 YAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +                 +++RD+KP N+LV   G I L DF +S
Sbjct: 124 ILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 171

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           SFVGT  Y++PE ++G  +    D W+ G+ L E+  G+ P         +F ++   + 
Sbjct: 181 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIGSGSGSMAIFELLDYIVN 240
Query: 628 FP----DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF-----EGVNWALIR 678
            P     S   S   +D +   L+K P  R  +K    ++  H F      E V++A   
Sbjct: 241 EPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLK----QLMVHAFIKRSDAEEVDFAGWL 296
Query: 679 CST 681
           CST
Sbjct: 297 CST 299

>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1 Catalytic Domain Apo Form Length = 390

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 20/129 (15%)
Query: 556 ELVAEPTAARSMSFVGTHEYLAPEIIKG-----------EGHGSAVDWWTFGIFLHELLY 604
           ++  + T+    S VGT  Y+ PE IK                   D W+ G  L+ + Y
Sbjct: 203 QMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY 262
Query: 605 GKTPFKGSGNRATLFNVV---GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGAT 661
           GKTPF+   N+ +  + +     ++ FPD P      +D+++  L ++P+ R+ +     
Sbjct: 263 GKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL--QDVLKCCLKRDPKQRISI----P 316
Query: 662 EIKQHPFFE 670
           E+  HP+ +
Sbjct: 317 ELLAHPYVQ 325

>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715 Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 20/129 (15%)
Query: 556 ELVAEPTAARSMSFVGTHEYLAPEIIKGEGHG-----------SAVDWWTFGIFLHELLY 604
           ++  + T+    S VGT  Y+ PE IK                   D W+ G  L+ + Y
Sbjct: 159 QMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY 218
Query: 605 GKTPFKGSGNRATLFNVV---GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGAT 661
           GKTPF+   N+ +  + +     ++ FPD P      +D+++  L ++P+ R+ +     
Sbjct: 219 GKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL--QDVLKCCLKRDPKQRISI----P 272
Query: 662 EIKQHPFFE 670
           E+  HP+ +
Sbjct: 273 ELLAHPYVQ 281

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 63/152 (41%), Gaps = 5/152 (3%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMK-VMDKASLASRKKLTRAQTEREILQLL 388
           M  +  + ++G G  G V+      T    A+K  ++       KK+  A  E  +L+ L
Sbjct: 2   MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKI--ALREIRMLKQL 59
Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXX 448
            HP L  L   F   R   LV EYC    LH L + Q G    E+  +            
Sbjct: 60  KHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRG--VPEHLVKSITWQTLQAVNF 117
Query: 449 XHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            H    ++RD+KPEN+L+     I L DF  +
Sbjct: 118 CHKHNCIHRDVKPENILITKHSVIKLCDFGFA 149

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 15/187 (8%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L+++G G  G V+    + T+   A+K++D             Q E  +L   D P+
Sbjct: 9   FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEI--EDIQQEITVLSQCDSPY 66
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +   Y  +  D    ++MEY  GG    L +  P     E                 H  
Sbjct: 67  VTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYLHSE 123
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQP 512
             ++RD+K  NVL+ + G + L+DF ++    ++ T IK ++    P        F + P
Sbjct: 124 KKIHRDIKAANVLLSEHGEVKLADFGVA--GQLTDTQIKRNTFVGTP--------FWMAP 173
Query: 513 ACIEPSS 519
             I+ S+
Sbjct: 174 EVIKQSA 180

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 324 RDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE 383
           R+ I     + + + +G G           +T   FA+K++DK+         R  TE E
Sbjct: 15  RNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNXEFAVKIIDKSK--------RDPTE-E 65
Query: 384 ILQLL---DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXX 440
           I  LL    HP + TL   ++  ++  +V E   GG+L     RQ  K FSE  A     
Sbjct: 66  IEILLRYGQHPNIITLKDVYDDGKYVYVVTELXKGGELLDKILRQ--KFFSEREASAVLF 123
Query: 441 XXXXXXXXXHMLGVVYRDLKPENVLVRDDG----HIMLSDFDLSLRCAVSPTLIKT 492
                    H  GVV+RDLKP N+L  D+      I + DF  + +      L+ T
Sbjct: 124 TITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLXT 179

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 20/180 (11%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L+++G G  G V+    + T+   A+K++D             Q E  +L   D P+
Sbjct: 24  FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEI--EDIQQEITVLSQCDSPY 81
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +   Y  +  D    ++MEY  GG    L +  P     E                 H  
Sbjct: 82  VTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYLHSE 138
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA---------------VSPTLIKTSSLDS 497
             ++RD+K  NVL+ + G + L+DF ++ +                 ++P +IK S+ DS
Sbjct: 139 KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDS 198

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 15/187 (8%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L+++G G  G V+    + T+   A+K++D             Q E  +L   D P+
Sbjct: 29  FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEI--EDIQQEITVLSQCDSPY 86
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +   Y  +  D    ++MEY  GG    L +  P     E                 H  
Sbjct: 87  VTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYLHSE 143
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQP 512
             ++RD+K  NVL+ + G + L+DF ++    ++ T IK ++    P        F + P
Sbjct: 144 KKIHRDIKAANVLLSEHGEVKLADFGVA--GQLTDTQIKRNTFVGTP--------FWMAP 193
Query: 513 ACIEPSS 519
             I+ S+
Sbjct: 194 EVIKQSA 200

>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2- Yl)amino]benzamide Length = 320

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 24/139 (17%)
Query: 546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHG-----------SAVDWWT 594
           + G+ +   P+     T+    S VGT  Y+ PE IK                   D W+
Sbjct: 149 DFGIANQMQPD----TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 204
Query: 595 FGIFLHELLYGKTPFKGSGNRATLFNVV---GQQLRFPDSPATSYASRDLIRGLLVKEPQ 651
            G  L+ + YGKTPF+   N+ +  + +     ++ FPD P      +D+++  L ++P+
Sbjct: 205 LGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL--QDVLKCCLKRDPK 262
Query: 652 HRLGVKRGATEIKQHPFFE 670
            R+ +     E+  HP+ +
Sbjct: 263 QRISI----PELLAHPYVQ 277

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 324 RDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE 383
           R+ I     + + + +G G           +T   FA+K++DK+         R  TE E
Sbjct: 15  RNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK--------RDPTE-E 65
Query: 384 ILQLL---DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXX 440
           I  LL    HP + TL   ++  ++  +V E   GG+L     RQ  K FSE  A     
Sbjct: 66  IEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQ--KFFSEREASAVLF 123
Query: 441 XXXXXXXXXHMLGVVYRDLKPENVLVRDDG----HIMLSDFDLSLRCAVSPTLIKT 492
                    H  GVV+RDLKP N+L  D+      I + DF  + +      L+ T
Sbjct: 124 TITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMT 179

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 29/117 (24%)
Query: 572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFK--------------GSGNRAT 617
           T  ++APE+++ +G+ +A D W+ G+ L+ +L G TPF               GSG    
Sbjct: 183 TANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGK--- 239
Query: 618 LFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
            F++ G         + S  ++DL+  +L  +P  RL     A  + +HP+   V+W
Sbjct: 240 -FSLSGGYWN-----SVSDTAKDLVSKMLHVDPHQRL----TAALVLRHPWI--VHW 284

>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain Length = 343

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 24/139 (17%)
Query: 546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKG-----------EGHGSAVDWWT 594
           + G+ +   P+     T+    S VGT  Y+ PE IK                   D W+
Sbjct: 150 DFGIANQMQPD----TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 205
Query: 595 FGIFLHELLYGKTPFKGSGNRATLFNVV---GQQLRFPDSPATSYASRDLIRGLLVKEPQ 651
            G  L+ + YGKTPF+   N+ +  + +     ++ FPD P      +D+++  L ++P+
Sbjct: 206 LGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL--QDVLKCCLKRDPK 263
Query: 652 HRLGVKRGATEIKQHPFFE 670
            R+ +     E+  HP+ +
Sbjct: 264 QRISI----PELLAHPYVQ 278

>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (ttk) Length = 313

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 24/139 (17%)
Query: 546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHG-----------SAVDWWT 594
           + G+ +   P+     T+    S VGT  Y+ PE IK                   D W+
Sbjct: 169 DFGIANQMQPD----TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 224
Query: 595 FGIFLHELLYGKTPFKGSGNRATLFNVV---GQQLRFPDSPATSYASRDLIRGLLVKEPQ 651
            G  L+ + YGKTPF+   N+ +  + +     ++ FPD P      +D+++  L ++P+
Sbjct: 225 LGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL--QDVLKCCLKRDPK 282
Query: 652 HRLGVKRGATEIKQHPFFE 670
            R+ +     E+  HP+ +
Sbjct: 283 QRISI----PELLAHPYVQ 297

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
            VGT  ++APE+I    + + VD W+ GI + E++ G+ P+            V    R 
Sbjct: 201 LVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP-------VQAMKRL 253
Query: 629 PDSP--------ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCS 680
            DSP          S   RD +  +LV++PQ R      A E+  HPF   +   L  C 
Sbjct: 254 RDSPPPKLKNSHKVSPVLRDFLERMLVRDPQER----ATAQELLDHPFL--LQTGLPECL 307
Query: 681 TP 682
            P
Sbjct: 308 VP 309

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 5/166 (3%)
Query: 316 KAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKK 374
           +A L  +A+ G L    F  +  LG G+ G V   +   +    A K++  +   A R +
Sbjct: 1   EAFLTQKAKVGELKDDDFERISELGAGNGGVVTKVQHRPSGLIMARKLIHLEIKPAIRNQ 60
Query: 375 LTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYA 434
           + R   E ++L   + P++   Y  F +D    + ME+  GG L  +  ++  +   E  
Sbjct: 61  IIR---ELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVL-KEAKRIPEEIL 116
Query: 435 ARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            +                 +++RD+KP N+LV   G I L DF +S
Sbjct: 117 GKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVS 162

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 20/180 (11%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L+++G G  G V+    + T+   A+K++D             Q E  +L   D P+
Sbjct: 9   FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEI--EDIQQEITVLSQCDSPY 66
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +   Y  +  D    ++MEY  GG    L +  P     E                 H  
Sbjct: 67  VTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYLHSE 123
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA---------------VSPTLIKTSSLDS 497
             ++RD+K  NVL+ + G + L+DF ++ +                 ++P +IK S+ DS
Sbjct: 124 KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDS 183

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 119/351 (33%), Gaps = 101/351 (28%)
Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           S F  +  LG G  G V  +  +    Y+A+K +      + +KL+   +E  +L  L+H
Sbjct: 6   SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH----TEEKLSTILSEVMLLASLNH 61
Query: 391 PFLPTLYTHFETDRFSC-------------LVMEYCPGGDLHTL-RQRQPGKHFSEYAAR 436
            ++   Y  +   R                + MEYC  G L+ L       +   EY   
Sbjct: 62  QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRL 121
Query: 437 FXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLD 496
           F            H  G+++RDLKP N+ +                              
Sbjct: 122 FRQILEALSYI--HSQGIIHRDLKPMNIFI------------------------------ 149
Query: 497 SDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPE 556
            D SR    G F +                           K   +    L L S  LP 
Sbjct: 150 -DESRNVKIGDFGLA--------------------------KNVHRSLDILKLDSQNLPG 182
Query: 557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNR 615
                T+A     +GT  Y+A E++ G GH    +D ++ GI   E++Y   PF     R
Sbjct: 183 SSDNLTSA-----IGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMER 234
Query: 616 ATLFNVVGQQLR---------FPDSPATSYASRDLIRGLLVKEPQHRLGVK 657
             +     ++LR         F D+       + +IR L+  +P  R G +
Sbjct: 235 VNIL----KKLRSVSIEFPPDFDDNKMK--VEKKIIRLLIDHDPNKRPGAR 279

>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (Ttk) In Complex With A Pyrimido-Diazepin Ligand Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 568 SFVGTHEYLAPEIIKGEGHG-----------SAVDWWTFGIFLHELLYGKTPFKGSGNRA 616
           S VGT  Y+ PE IK                   D W+ G  L+ + YGKTPF+   N+ 
Sbjct: 187 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 246
Query: 617 TLFNVV---GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
           +  + +     ++ FPD P      +D+++  L ++P+ R+ +     E+  HP+ +
Sbjct: 247 SKLHAIIDPNHEIEFPDIPEKDL--QDVLKCCLKRDPKQRISI----PELLAHPYVQ 297

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
             F GT  YL+PE+++ + +G  VD W  G+ L+ LL G  PF           +     
Sbjct: 171 FGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAY 230
Query: 627 RF--PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            F  P+    +  ++DLI  +L   P  R+     A E  +HP+ 
Sbjct: 231 DFPSPEWDTVTPEAKDLINKMLTINPSKRI----TAAEALKHPWI 271

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M  ++ L+++G G  G VY ++ S  R    +  + +  L +  +   +   REI  L+ 
Sbjct: 20  MEKYQKLEKVGEGTYGVVYKAKDSQGR----IVALKRIRLDAEDEGIPSTAIREISLLKE 75
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L HP + +L     ++R   LV E+        L + + G   S+   +           
Sbjct: 76  LHHPNIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQ--IKIYLYQLLRGVA 133
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   +++RDLKP+N+L+  DG + L+DF L+
Sbjct: 134 HCHQHRILHRDLKPQNLLINSDGALKLADFGLA 166

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M  ++ L+++G G  G VY ++ S  R    +  + +  L +  +   +   REI  L+ 
Sbjct: 20  MEKYQKLEKVGEGTYGVVYKAKDSQGR----IVALKRIRLDAEDEGIPSTAIREISLLKE 75
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L HP + +L     ++R   LV E+        L + + G   S+   +           
Sbjct: 76  LHHPNIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQ--IKIYLYQLLRGVA 133
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   +++RDLKP+N+L+  DG + L+DF L+
Sbjct: 134 HCHQHRILHRDLKPQNLLINSDGALKLADFGLA 166

>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a Mutant In Complex With Sp600125 Inhibitor Length = 390

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKG-----------EGHGSAVDWWT 594
           + G+ +   P+     T+    S VG   Y+ PE IK                   D W+
Sbjct: 197 DFGIANQMQPD----TTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 252
Query: 595 FGIFLHELLYGKTPFKGSGNRATLFNVV---GQQLRFPDSPATSYASRDLIRGLLVKEPQ 651
            G  L+ + YGKTPF+   N+ +  + +     ++ FPD P      +D+++  L ++P+
Sbjct: 253 LGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDL--QDVLKCCLKRDPK 310
Query: 652 HRLGVKRGATEIKQHPFFE 670
            R+ +     E+  HP+ +
Sbjct: 311 QRISI----PELLAHPYVQ 325

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 2/145 (1%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L+ +G G  G+VY +         A+K M  +   S +K      E   LQ L HP 
Sbjct: 56  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
                  +  +  + LVMEYC G     L   +      E AA              H  
Sbjct: 116 TIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA--VTHGALQGLAYLHSH 173
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDF 477
            +++RD+K  N+L+ + G + L DF
Sbjct: 174 NMIHRDVKAGNILLSEPGLVKLGDF 198

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 15/187 (8%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L R+G G  G VY    + T+   A+K++D             Q E  +L   D P+
Sbjct: 21  FTKLDRIGKGSFGEVYKGIDNHTKEVVAIKIIDLEEAEDEI--EDIQQEITVLSQCDSPY 78
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           +   +  +       ++MEY  GG    L   +PG     Y A              H  
Sbjct: 79  ITRYFGSYLKSTKLWIIMEYLGGGS--ALDLLKPGPLEETYIATILREILKGLDYL-HSE 135
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQP 512
             ++RD+K  NVL+ + G + L+DF ++    ++ T IK +     P        F + P
Sbjct: 136 RKIHRDIKAANVLLSEQGDVKLADFGVA--GQLTDTQIKRNXFVGTP--------FWMAP 185
Query: 513 ACIEPSS 519
             I+ S+
Sbjct: 186 EVIKQSA 192

>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 Length = 400

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+ ++ LL G  PF  +   A        +   Q  FP+
Sbjct: 229 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN 288
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            P  S  S +   LIR LL  EP  R+ +    TE   HP+ 
Sbjct: 289 -PEWSEVSEEVKMLIRNLLKTEPTQRMTI----TEFMNHPWI 325

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           F  +  LG G+ G V+      +    A K++  +   A R ++ R   E ++L   + P
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           ++   Y  F +D    + ME+  GG L  + ++  G+   +   +               
Sbjct: 65  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREK 123
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             +++RD+KP N+LV   G I L DF +S
Sbjct: 124 HKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPF------KGSGNRATLFNV 621
           SFVGT  Y++PE ++G  +    D W+ G+ L E+  G+ P       + S     +F +
Sbjct: 162 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKEDSRPPMAIFEL 221
Query: 622 VGQQLRFP----DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF-----EGV 672
           +   +  P     S   S   +D +   L+K P  R  +K    ++  H F      E V
Sbjct: 222 LDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLK----QLMVHAFIKRSDAEEV 277
Query: 673 NWALIRCST 681
           ++A   CST
Sbjct: 278 DFAGWLCST 286

>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer Length = 406

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+ ++ LL G  PF  +   A        +   Q  FP+
Sbjct: 235 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN 294
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            P  S  S +   LIR LL  EP  R+ +    TE   HP+ 
Sbjct: 295 -PEWSEVSEEVKMLIRNLLKTEPTQRMTI----TEFMNHPWI 331

>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4-Ylamino)-2- Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide Length = 320

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+ ++ LL G  PF  +   A        +   Q  FP+
Sbjct: 183 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN 242
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            P  S  S +   LIR LL  EP  R+ +    TE   HP+ 
Sbjct: 243 -PEWSEVSEEVKMLIRNLLKTEPTQRMTI----TEFMNHPWI 279

>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+ ++ LL G  PF  +   A        +   Q  FP+
Sbjct: 183 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN 242
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            P  S  S +   LIR LL  EP  R+ +    TE   HP+ 
Sbjct: 243 -PEWSEVSEEVKMLIRNLLKTEPTQRMTI----TEFMNHPWI 279

>pdb|2OZA|A Chain A, Structure Of P38alpha Complex Length = 356

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+ ++ LL G  PF  +   A        +   Q  FP+
Sbjct: 185 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN 244
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            P  S  S +   LIR LL  EP  R+ +    TE   HP+ 
Sbjct: 245 -PEWSEVSEEVKMLIRNLLKTEPTQRMTI----TEFMNHPWI 281

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 2/145 (1%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F  L+ +G G  G+VY +         A+K M  +   S +K      E   LQ L HP 
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
                  +  +  + LVMEYC G     L   +      E AA              H  
Sbjct: 77  TIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA--VTHGALQGLAYLHSH 134
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDF 477
            +++RD+K  N+L+ + G + L DF
Sbjct: 135 NMIHRDVKAGNILLSEPGLVKLGDF 159

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 4/156 (2%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           ++++ +LG G + +VYL+E +      A+K +        + L R + E      L H  
Sbjct: 13  YKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQN 72
Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHML 452
           + ++    E D    LVMEY  G  L    +   G    + A  F            H +
Sbjct: 73  IVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESH-GPLSVDTAINF-TNQILDGIKHAHDM 130
Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT 488
            +V+RD+KP+N+L+  D +  L  FD  +  A+S T
Sbjct: 131 RIVHRDIKPQNILI--DSNKTLKIFDFGIAKALSET 164

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 554 LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKG 611
           + + ++E +  ++   +GT +Y +PE  KGE      D ++ GI L+E+L G+ PF G
Sbjct: 157 IAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNG 214

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           F  +  LG G+ G V+      +    A K++  +   A R ++ R   E ++L   + P
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           ++   Y  F +D    + ME+  GG L  + ++  G+   +   +               
Sbjct: 65  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREK 123
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             +++RD+KP N+LV   G I L DF +S
Sbjct: 124 HKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated Protein Kinase-Activated Protein Kinase 3 (Mk3)-Inhibitor Complex Length = 336

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+ ++ LL G  PF  +  +A        +   Q  FP+
Sbjct: 195 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPN 254
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPR 687
            P  S  S D   LIR LL  +P  RL +    T+   HP+   +N +++   TP    R
Sbjct: 255 -PEWSEVSEDAKQLIRLLLKTDPTERLTI----TQFMNHPW---INQSMVVPQTPLHTAR 306
Query: 688 PMEAE 692
            ++ +
Sbjct: 307 VLQED 311

>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1 Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+ ++ LL G  PF  +   A        +   Q  FP+
Sbjct: 184 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN 243
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            P  S  S +   LIR LL  EP  R+ +    TE   HP+ 
Sbjct: 244 -PEWSEVSEEVKMLIRNLLKTEPTQRMTI----TEFMNHPWI 280

>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76 Length = 324

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+ ++ LL G  PF  +   A        +   Q  FP+
Sbjct: 189 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN 248
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            P  S  S +   LIR LL  EP  R+ +    TE   HP+ 
Sbjct: 249 -PEWSEVSEEVKMLIRNLLKTEPTQRMTI----TEFMNHPWI 285

>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To Mapkap Kinase-2 Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+ ++ LL G  PF  +   A        +   Q  FP+
Sbjct: 185 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN 244
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            P  S  S +   LIR LL  EP  R+ +    TE   HP+ 
Sbjct: 245 -PEWSEVSEEVKMLIRNLLKTEPTQRMTI----TEFMNHPWI 281

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           F  +  LG G+ G V+      +    A K++  +   A R ++ R   E ++L   + P
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           ++   Y  F +D    + ME+  GG L  + ++  G+   +   +               
Sbjct: 65  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREK 123
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             +++RD+KP N+LV   G I L DF +S
Sbjct: 124 HKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal Form-1, Soaking) Length = 326

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+ ++ LL G  PF  +   A        +   Q  FP+
Sbjct: 191 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN 250
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            P  S  S +   LIR LL  EP  R+ +    TE   HP+ 
Sbjct: 251 -PEWSEVSEEVKMLIRNLLKTEPTQRMTI----TEFMNHPWI 287

>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+ ++ LL G  PF  +  +A        +   Q  FP+
Sbjct: 176 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPN 235
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPR 687
            P  S  S D   LIR LL  +P  RL +    T+   HP+   +N +++   TP    R
Sbjct: 236 -PEWSEVSEDAKQLIRLLLKTDPTERLTI----TQFMNHPW---INQSMVVPQTPLHTAR 287
Query: 688 PMEAE 692
            ++ +
Sbjct: 288 VLQED 292

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKL-TRAQTEREILQLLD 389
           S F+ L++LG G   +VY     +T  Y A+K   +  L S +   + A  E  +++ L 
Sbjct: 5   SQFKQLEKLGNGTYATVYKGLNKTTGVYVALK---EVKLDSEEGTPSTAIREISLMKELK 61
Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPG---KHFSEYAARFXXXXXXXXX 446
           H  +  LY    T+    LV E+        +  R  G   +       ++         
Sbjct: 62  HENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGL 121
Query: 447 XXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              H   +++RDLKP+N+L+   G + L DF L+
Sbjct: 122 AFCHENKILHRDLKPQNLLINKRGQLKLGDFGLA 155

>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap Kinase-2 Length = 325

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+ ++ LL G  PF  +   A        +   Q  FP+
Sbjct: 190 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN 249
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            P  S  S +   LIR LL  EP  R+ +    TE   HP+ 
Sbjct: 250 -PEWSEVSEEVKMLIRNLLKTEPTQRMTI----TEFMNHPWI 286

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN 620
           P  ++  + VGT  ++APE++  + +G  VD W+ GI   E++ G+ P+        L+ 
Sbjct: 169 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 228
Query: 621 VVGQ---QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRG-ATEIKQHPFFE 670
           +      +L+ P+  +  +  RD +   L  + +     KRG A E+ QH F +
Sbjct: 229 IATNGTPELQNPEKLSAIF--RDFLNRCLEMDVE-----KRGSAKELIQHQFLK 275

>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands Length = 334

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+ ++ LL G  PF  +   A        +   Q  FP+
Sbjct: 199 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN 258
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            P  S  S +   LIR LL  EP  R+ +    TE   HP+ 
Sbjct: 259 -PEWSEVSEEVKMLIRNLLKTEPTQRMTI----TEFMNHPWI 295

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           F  +  LG G+ G V+      +    A K++  +   A R ++ R   E ++L   + P
Sbjct: 11  FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 67
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           ++   Y  F +D    + ME+  GG L  + ++  G+   +   +               
Sbjct: 68  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK-AGRIPEQILGKVSIAVIKGLTYLREK 126
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             +++RD+KP N+LV   G I L DF +S
Sbjct: 127 HKIMHRDVKPSNILVNSRGEIKLCDFGVS 155

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN 620
           P  ++  + VGT  ++APE++  + +G  VD W+ GI   E++ G+ P+        L+ 
Sbjct: 168 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227
Query: 621 VVGQ---QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRG-ATEIKQHPFFE 670
           +      +L+ P+  +  +  RD +   L  + +     KRG A E+ QH F +
Sbjct: 228 IATNGTPELQNPEKLSAIF--RDFLNRCLDMDVE-----KRGSAKELLQHQFLK 274

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           F  +  LG G+ G V+      +    A K++  +   A R ++ R   E ++L   + P
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           ++   Y  F +D    + ME+  GG L  + ++  G+   +   +               
Sbjct: 65  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK-AGRIPEQILGKVSIAVIKGLTYLREK 123
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             +++RD+KP N+LV   G I L DF +S
Sbjct: 124 HKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASRKKLTRAQTEREILQLLDHP 391
           F  +  LG G+ G V+      +    A K++  +   A R ++ R   E ++L   + P
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR---ELQVLHECNSP 64
Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           ++   Y  F +D    + ME+  GG L  + ++  G+   +   +               
Sbjct: 65  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK-AGRIPEQILGKVSIAVIKGLTYLREK 123
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             +++RD+KP N+LV   G I L DF +S
Sbjct: 124 HKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN 620
           P  ++    VGT  ++APE++  + +G  VD W+ GI   E++ G+ P+        L+ 
Sbjct: 168 PEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227
Query: 621 VVGQ---QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRG-ATEIKQHPFFE 670
           +      +L+ P+  +  +  RD +   L  + +     KRG A E+ QH F +
Sbjct: 228 IATNGTPELQNPEKLSAIF--RDFLNRCLEMDVE-----KRGSAKELLQHQFLK 274

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN 620
           P  ++    VGT  ++APE++  + +G  VD W+ GI   E++ G+ P+        L+ 
Sbjct: 169 PEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 228
Query: 621 VVGQ---QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRG-ATEIKQHPFFE 670
           +      +L+ P+  +  +  RD +   L  + +     KRG A E+ QH F +
Sbjct: 229 IATNGTPELQNPEKLSAIF--RDFLNRCLEMDVE-----KRGSAKELIQHQFLK 275

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN 620
           P  ++    VGT  ++APE++  + +G  VD W+ GI   E++ G+ P+        L+ 
Sbjct: 168 PEQSKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227
Query: 621 VVGQ---QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRG-ATEIKQHPFFE 670
           +      +L+ P+  +  +  RD +   L  + +     KRG A E+ QH F +
Sbjct: 228 IATNGTPELQNPEKLSAIF--RDFLNRCLDMDVE-----KRGSAKELLQHQFLK 274

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 118/351 (33%), Gaps = 101/351 (28%)
Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           S F  +  LG G  G V  +  +    Y+A+K +      + +KL+   +E  +L  L+H
Sbjct: 6   SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH----TEEKLSTILSEVMLLASLNH 61
Query: 391 PFLPTLYTHFETDRFSC-------------LVMEYCPGGDLHTL-RQRQPGKHFSEYAAR 436
            ++   Y  +   R                + MEYC    L+ L       +   EY   
Sbjct: 62  QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENLNQQRDEYWRL 121
Query: 437 FXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLD 496
           F            H  G+++RDLKP N+ +                              
Sbjct: 122 FRQILEALSYI--HSQGIIHRDLKPMNIFI------------------------------ 149
Query: 497 SDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPE 556
            D SR    G F +                           K   +    L L S  LP 
Sbjct: 150 -DESRNVKIGDFGLA--------------------------KNVHRSLDILKLDSQNLPG 182
Query: 557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNR 615
                T+A     +GT  Y+A E++ G GH    +D ++ GI   E++Y   PF     R
Sbjct: 183 SSDNLTSA-----IGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMER 234
Query: 616 ATLFNVVGQQLR---------FPDSPATSYASRDLIRGLLVKEPQHRLGVK 657
             +     ++LR         F D+       + +IR L+  +P  R G +
Sbjct: 235 VNIL----KKLRSVSIEFPPDFDDNKMK--VEKKIIRLLIDHDPNKRPGAR 279

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPF 609
           FVGT +YLAPE+++ + +   VD+W+FG    E + G  PF
Sbjct: 184 FVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPF 224

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPF 609
           FVGT +YLAPE+++ + +   VD+W+FG    E + G  PF
Sbjct: 183 FVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPF 223

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 568 SFVGTHEYLAPEII-KG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNV 621
           +F GT +Y+APEII KG  G+G A D W+ G  + E+  GK PF   G  +A +F V
Sbjct: 182 TFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKV 238

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 15/179 (8%)
Query: 326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI- 384
           G +  S +  +  +G G  G+VY +    +  + A+K +   +           T RE+ 
Sbjct: 4   GSMATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVA 63
Query: 385 ----LQLLDHPFLPTLYTHFETDRFS-----CLVMEYCPGGDLHTLRQRQPGKHFSEYAA 435
               L+  +HP +  L     T R        LV E+    DL T   + P         
Sbjct: 64  LLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHV-DQDLRTYLDKAPPPGLPAETI 122
Query: 436 RFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDL----SLRCAVSPTLI 490
           +             H   +V+RDLKPEN+LV   G + L+DF L    S + A++P ++
Sbjct: 123 KDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVV 181

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R    VGT  ++APE+I    +G  VD W+ GI + E++ G+ P+        +  ++  
Sbjct: 303 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM-KMIRD 361
Query: 625 QL--RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            L  R  +    S + +  +  LLV++P  R      A E+ +HPF 
Sbjct: 362 NLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRA----TAAELLKHPFL 404

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA 616
           L   P  AR    VGT  Y++PE I G  +   VD ++ G+ L ELLY   PF     R 
Sbjct: 178 LTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERV 234
Query: 617 -TLFNVVGQQLRFPDSPATSY-ASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
            TL +V  + L+FP      Y     +++ +L   P  R      A  I ++  FE +++
Sbjct: 235 RTLTDV--RNLKFPPLFTQKYPCEYVMVQDMLSPSPMER----PEAINIIENAVFEDLDF 288

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 9/207 (4%)
Query: 271 RGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGM 330
           RG  +E+     +RA   +G+ +            +P + +  +++A L +    G    
Sbjct: 17  RGSHMENLYFQGARARQENGMPEKP--PGPRSPQREPQRVSHEQFRAALQLVVDPGD-PR 73
Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           S+     ++G G  G V ++ + S+    A+K MD      R+ L     E  I++   H
Sbjct: 74  SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLF---NEVVIMRDYQH 130
Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXH 450
             +  +Y  +       +VME+  GG L  +         +E                 H
Sbjct: 131 ENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLH 187
Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDF 477
             GV++RD+K +++L+  DG + LSDF
Sbjct: 188 AQGVIHRDIKSDSILLTHDGRVKLSDF 214

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R    VGT  ++APE+I    +G  VD W+ GI + E++ G+ P+        +  ++  
Sbjct: 226 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM-KMIRD 284
Query: 625 QL--RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            L  R  +    S + +  +  LLV++P  R      A E+ +HPF 
Sbjct: 285 NLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRA----TAAELLKHPFL 327

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M  +  L+++G G  G+V+ ++   T    A+K   +  L    +   +   REI  L+ 
Sbjct: 1   MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALK---RVRLDDDDEGVPSSALREICLLKE 57
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L H  +  L+    +D+   LV E+C   DL        G    E    F          
Sbjct: 58  LKHKNIVRLHDVLHSDKKLTLVFEFC-DQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGF 116
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   V++RDLKP+N+L+  +G + L+DF L+
Sbjct: 117 C-HSRNVLHRDLKPQNLLINRNGELKLADFGLA 148

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 568 SFVGTHEYLAPEII-KG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNV 621
           +F GT +Y+APEII KG  G+G A D W+ G  + E+  GK PF   G  +A +F V
Sbjct: 168 TFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKV 224

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-LR 627
            VGT  ++APE+I    +G+ VD W+ GI + E++ G+ P+        +  +      R
Sbjct: 201 LVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDSLPPR 260
Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
             D    S   R  +  +LV+EP  R      A E+  HPF +
Sbjct: 261 VKDLHKVSSVLRGFLDLMLVREPSQR----ATAQELLGHPFLK 299

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R    VGT  ++APE+I    +G  VD W+ GI + E++ G+ P+        +  ++  
Sbjct: 181 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM-KMIRD 239
Query: 625 QL--RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            L  R  +    S + +  +  LLV++P  R      A E+ +HPF 
Sbjct: 240 NLPPRLKNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 282

>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase 2 Length = 400

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFPD 630
           Y+APE++  E +  + D W+ G+  + LL G  PF  +   A        +   Q  FP+
Sbjct: 229 YVAPEVLGPEKYDKSCDXWSLGVIXYILLCGYPPFYSNHGLAISPGXKTRIRXGQYEFPN 288
Query: 631 SPATSYASRD---LIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            P  S  S +   LIR LL  EP  R  +    TE   HP+ 
Sbjct: 289 -PEWSEVSEEVKXLIRNLLKTEPTQRXTI----TEFXNHPWI 325

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R    VGT  ++APE+I    +G  VD W+ GI + E++ G+ P+        +  ++  
Sbjct: 183 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM-KMIRD 241
Query: 625 QL--RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            L  R  +    S + +  +  LLV++P  R      A E+ +HPF 
Sbjct: 242 NLPPRLKNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 284

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 2/147 (1%)
Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPT 395
           L  +G G  G V+      T    A+K M ++      K      +  +L+  D P++  
Sbjct: 30  LGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLD-VVLKSHDCPYIVQ 88
Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXXXXHMLGVV 455
            +  F T+    + ME   G     L++R  G        +                GV+
Sbjct: 89  CFGTFITNTDVFIAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVI 147
Query: 456 YRDLKPENVLVRDDGHIMLSDFDLSLR 482
           +RD+KP N+L+ + G I L DF +S R
Sbjct: 148 HRDVKPSNILLDERGQIKLCDFGISGR 174

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R    VGT  ++APE+I    +G  VD W+ GI + E++ G+ P+        +  ++  
Sbjct: 172 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM-KMIRD 230
Query: 625 QL--RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            L  R  +    S + +  +  LLV++P  R      A E+ +HPF 
Sbjct: 231 NLPPRLKNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 273

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 49/174 (28%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN-------------- 614
           +V T  Y APE+I G G+ + VD W+ G  + EL+ G   F+G+ +              
Sbjct: 185 YVVTRYYRAPEVILGMGYAANVDIWSVGCIMGELVKGCVIFQGTDHIDQWNKVIEQLGTP 244
Query: 615 --------RATLFNVVGQQLRFP-------------------DSPATSYASRDLIRGLLV 647
                   + T+ N V  + ++P                   D   TS A RDL+  +LV
Sbjct: 245 SAEFMAALQPTVRNYVENRPKYPGIKFEELFPDWIFPSESERDKIKTSQA-RDLLSKMLV 303
Query: 648 KEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVD 701
            +P  R+ V     E  +HP+   V +       PP  P+  +A+L  +  A++
Sbjct: 304 IDPDKRISVD----EALRHPYI-TVWYDPAEAEAPP--PQIYDAQLEEREHAIE 350

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R    VGT  ++APE+I    +G  VD W+ GI + E++ G+ P+        +  ++  
Sbjct: 176 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM-KMIRD 234
Query: 625 QL--RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            L  R  +    S + +  +  LLV++P  R      A E+ +HPF 
Sbjct: 235 NLPPRLKNLHKVSPSLKGFLDRLLVRDPAQR----ATAAELLKHPFL 277

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 24/163 (14%)
Query: 329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQ 386
           GM +F+ ++++G G  G VY +    T    A+K   K  L +  +   +   REI  L+
Sbjct: 1   GMENFQKVEKIGEGTYGVVYKARNKLTGEVVALK---KIRLDTETEGVPSTAIREISLLK 57
Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXX 446
            L+HP +  L     T+    LV E+     LH     Q  K F + +A           
Sbjct: 58  ELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIKS 107
Query: 447 XXXHMLG---------VVYRDLKPENVLVRDDGHIMLSDFDLS 480
               +L          V++RDLKP+N+L+  +G I L+DF L+
Sbjct: 108 YLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           ++ + +GT +YL+PE  +G+   +  D ++ G  L+E+L G+ PF G     +  +V  Q
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD----SPVSVAYQ 230
Query: 625 QLR---FPDSPATSYASRDL---IRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIR 678
            +R    P S      S DL   +   L K P++R    + A E++        +   + 
Sbjct: 231 HVREDPIPPSARHEGLSADLDAVVLKALAKNPENRY---QTAAEMR-------ADLVRVH 280
Query: 679 CSTPPEVPR 687
              PPE P+
Sbjct: 281 NGEPPEAPK 289

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M  +  L+++G G  G VY ++ +     FA+K   K  L    +   + T REI  L+ 
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQNNYGET-FALK---KIRLEKEDEGIPSTTIREISILKE 56
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L H  +  LY    T +   LV E+    DL  L     G   S  A  F          
Sbjct: 57  LKHSNIVKLYDVIHTKKRLVLVFEHL-DQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAY 115
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   V++RDLKP+N+L+  +G + ++DF L+
Sbjct: 116 C-HDRRVLHRDLKPQNLLINREGELKIADFGLA 147

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M  +  L+++G G  G VY ++ +     FA+K   K  L    +   + T REI  L+ 
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQNNYGET-FALK---KIRLEKEDEGIPSTTIREISILKE 56
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L H  +  LY    T +   LV E+    DL  L     G   S  A  F          
Sbjct: 57  LKHSNIVKLYDVIHTKKRLVLVFEHL-DQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAY 115
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   V++RDLKP+N+L+  +G + ++DF L+
Sbjct: 116 C-HDRRVLHRDLKPQNLLINREGELKIADFGLA 147

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M  +  L+++G G  G VY ++ +     FA+K   K  L    +   + T REI  L+ 
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQNNYGET-FALK---KIRLEKEDEGIPSTTIREISILKE 56
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L H  +  LY    T +   LV E+    DL  L     G   S  A  F          
Sbjct: 57  LKHSNIVKLYDVIHTKKRLVLVFEHL-DQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAY 115
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   V++RDLKP+N+L+  +G + ++DF L+
Sbjct: 116 C-HDRRVLHRDLKPQNLLINREGELKIADFGLA 147

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           ++ + +GT +YL+PE  +G+   +  D ++ G  L+E+L G+ PF G    +  +  V +
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQHV-R 233
Query: 625 QLRFPDSPATSYASRDL---IRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCST 681
           +   P S      S DL   +   L K P++R    + A E++        +   +    
Sbjct: 234 EDPIPPSARHEGLSADLDAVVLKALAKNPENRY---QTAAEMR-------ADLVRVHNGE 283
Query: 682 PPEVPR 687
           PPE P+
Sbjct: 284 PPEAPK 289

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           ++ + +GT +YL+PE  +G+   +  D ++ G  L+E+L G+ PF G     +  +V  Q
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD----SPVSVAYQ 230
Query: 625 QLR---FPDSPATSYASRDL---IRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIR 678
            +R    P S      S DL   +   L K P++R    + A E++        +   + 
Sbjct: 231 HVREDPIPPSARHEGLSADLDAVVLKALAKNPENRY---QTAAEMR-------ADLVRVH 280
Query: 679 CSTPPEVPR 687
              PPE P+
Sbjct: 281 NGEPPEAPK 289

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 339 LGCGDIGSVY--LSELSSTRCYFAMKVMDKAS-LASRKKLTRAQTEREILQLLDHPFLPT 395
           LGCG+ GSV   +  +   +   A+KV+ + +  A  +++ R   E +I+  LD+P++  
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMR---EAQIMHQLDNPYIVR 74
Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTL----RQRQPGKHFSEYAARFXXXXXXXXXXXXHM 451
           L    + +    LVME   GG LH      R+  P  + +E   +               
Sbjct: 75  LIGVCQAEALM-LVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---- 129
Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              V+RDL   NVL+ +  +  +SDF LS
Sbjct: 130 -NFVHRDLAARNVLLVNRHYAKISDFGLS 157

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           ++ + +GT +YL+PE  +G+   +  D ++ G  L+E+L G+ PF G     +  +V  Q
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD----SPVSVAYQ 230
Query: 625 QLR---FPDSPATSYASRDL---IRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIR 678
            +R    P S      S DL   +   L K P++R    + A E++        +   + 
Sbjct: 231 HVREDPIPPSARHEGLSADLDAVVLKALAKNPENRY---QTAAEMR-------ADLVRVH 280
Query: 679 CSTPPEVPR 687
              PPE P+
Sbjct: 281 NGEPPEAPK 289

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           ++ + +GT +YL+PE  +G+   +  D ++ G  L+E+L G+ PF G     +  +V  Q
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD----SPVSVAYQ 230
Query: 625 QLR---FPDSPATSYASRDL---IRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIR 678
            +R    P S      S DL   +   L K P++R    + A E++        +   + 
Sbjct: 231 HVREDPIPPSARHEGLSADLDAVVLKALAKNPENRY---QTAAEMR-------ADLVRVH 280
Query: 679 CSTPPEVPR 687
              PPE P+
Sbjct: 281 NGEPPEAPK 289

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 16/163 (9%)
Query: 327 ILGMSHFRLLKRLGCGDIGSVYLSELS----STRCYFAMKVMDKASLASRKKLTRAQTER 382
           I    H + + +LG G+ GSV L        +T    A+K +  +    ++   R   E 
Sbjct: 6   IFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQR---EI 62
Query: 383 EILQLLDHPFLPTLY-THFETDRFSC-LVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXX 440
           +IL+ L   F+       +   R S  LVMEY P G L    QR    H +   A     
Sbjct: 63  QILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQR----HRARLDASRLLL 118
Query: 441 XXXXXXXXXHMLG---VVYRDLKPENVLVRDDGHIMLSDFDLS 480
                      LG    V+RDL   N+LV  + H+ ++DF L+
Sbjct: 119 YSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 161

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 16/163 (9%)
Query: 327 ILGMSHFRLLKRLGCGDIGSVYLSELS----STRCYFAMKVMDKASLASRKKLTRAQTER 382
           I    H + + +LG G+ GSV L        +T    A+K +  +    ++   R   E 
Sbjct: 7   IFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQR---EI 63
Query: 383 EILQLLDHPFLPTLY-THFETDRFSC-LVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXX 440
           +IL+ L   F+       +   R S  LVMEY P G L    QR    H +   A     
Sbjct: 64  QILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQR----HRARLDASRLLL 119
Query: 441 XXXXXXXXXHMLG---VVYRDLKPENVLVRDDGHIMLSDFDLS 480
                      LG    V+RDL   N+LV  + H+ ++DF L+
Sbjct: 120 YSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 162

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M  +  L+++G G  G+V+ ++   T    A+K   +  L    +   +   REI  L+ 
Sbjct: 1   MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALK---RVRLDDDDEGVPSSALREICLLKE 57
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L H  +  L+    +D+   LV E+C   DL        G    E    F          
Sbjct: 58  LKHKNIVRLHDVLHSDKKLTLVFEFC-DQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGF 116
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   V++RDLKP+N+L+  +G + L++F L+
Sbjct: 117 C-HSRNVLHRDLKPQNLLINRNGELKLANFGLA 148

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA 616
           L   P  A     VGT  Y++PE I G  +   VD ++ G+ L ELLY    F     R 
Sbjct: 224 LTPMPAYATHXGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYS---FSTQMERV 280
Query: 617 TLFNVVGQQLRFPDSPATSYASRD-LIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV 672
            +   V + L+FP      Y     +++ +L   P  R      AT+I ++  FE +
Sbjct: 281 RIITDV-RNLKFPLLFTQKYPQEHMMVQDMLSPSPTER----PEATDIIENAIFENL 332

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 16/163 (9%)
Query: 327 ILGMSHFRLLKRLGCGDIGSVYLSELS----STRCYFAMKVMDKASLASRKKLTRAQTER 382
           I    H + + +LG G+ GSV L        +T    A+K +  +    ++   R   E 
Sbjct: 19  IFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQR---EI 75
Query: 383 EILQLLDHPFLPTLY-THFETDRFSC-LVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXX 440
           +IL+ L   F+       +   R S  LVMEY P G L    QR    H +   A     
Sbjct: 76  QILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQR----HRARLDASRLLL 131
Query: 441 XXXXXXXXXHMLG---VVYRDLKPENVLVRDDGHIMLSDFDLS 480
                      LG    V+RDL   N+LV  + H+ ++DF L+
Sbjct: 132 YSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 174

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M +F+ ++++G G  G VY +    T    A+K   K  L +  +   +   REI  L+ 
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALK---KIRLDTETEGVPSTAIREISLLKE 61
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L+HP +  L     T+    LV E+    DL T               +           
Sbjct: 62  LNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKTFMDASALTGIPLPLIKSYLFQLLQGLA 120
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   V++RDLKP+N+L+  +G I L+DF L+
Sbjct: 121 FCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           +V T  Y APE+I G G+   VD W+ G  + EL+ G   F+G+ +    +N V +QL  
Sbjct: 183 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT-DHIDQWNKVIEQLGT 241
Query: 629 PDS 631
           P +
Sbjct: 242 PSA 244

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGS-AVDWWTFGIFLHELLYGKTPFKGSGNRA 616
           +A  T      +V T  Y APEI+    H +  VD W+ G  + ELL G+T F G+ +  
Sbjct: 200 LARHTDDEMTGYVATRWYRAPEIMLNWMHYNMTVDIWSVGCIMAELLTGRTLFPGTDH-- 257
Query: 617 TLFNVVGQQLRFPDSPATSYASR 639
              N + Q +R   +P  S  SR
Sbjct: 258 --INQLQQIMRLTGTPPASVISR 278

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 68/181 (37%), Gaps = 20/181 (11%)
Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL-ASRKKLTRAQTERE------ 383
           S   + K +G GD G V         CY  ++V  +  +  + K L    TER+      
Sbjct: 49  SRIHIEKIIGSGDSGEV---------CYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLS 99
Query: 384 ---ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXX 440
              I+   DHP +  L       R + +V EY   G L T  +   G+ F+         
Sbjct: 100 EASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQ-FTIMQLVGMLR 158
Query: 441 XXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPS 500
                      LG V+RDL   NVLV  +    +SDF LS      P    T++    P 
Sbjct: 159 GVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTTTGGKIPI 218
Query: 501 R 501
           R
Sbjct: 219 R 219

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 24/162 (14%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M +F+ ++++G G  G VY +    T    A+K   K  L +  +   +   REI  L+ 
Sbjct: 4   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALK---KIRLDTETEGVPSTAIREISLLKE 60
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L+HP +  L     T+    LV E+     LH     Q  K F + +A            
Sbjct: 61  LNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIKSY 110
Query: 448 XXHMLG---------VVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +L          V++RDLKPEN+L+  +G I L+DF L+
Sbjct: 111 LFQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLA 152

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 24/162 (14%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M +F+ ++++G G  G VY +    T    A+K   K  L +  +   +   REI  L+ 
Sbjct: 3   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALK---KIRLDTETEGVPSTAIREISLLKE 59
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L+HP +  L     T+    LV E+     LH     Q  K F + +A            
Sbjct: 60  LNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIKSY 109
Query: 448 XXHMLG---------VVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +L          V++RDLKPEN+L+  +G I L+DF L+
Sbjct: 110 LFQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLA 151

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 6/153 (3%)
Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M +F+ ++++G G  G VY +    T    A+K   K  L +  +   +   REI  L+ 
Sbjct: 5   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALK---KIRLDTETEGVPSTAIREISLLKE 61
Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXXXXXXXXX 447
           L+HP +  L     T+    LV E+    DL                 +           
Sbjct: 62  LNHPNIVKLLDVIHTENKLYLVFEFL-SMDLKKFMDASALTGIPLPLIKSYLFQLLQGLA 120
Query: 448 XXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             H   V++RDLKPEN+L+  +G I L+DF L+
Sbjct: 121 FCHSHRVLHRDLKPENLLINTEGAIKLADFGLA 153

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           T+   + FV T  Y APE+I G G+   VD W+ G  + E++ G   F G+ +    +N 
Sbjct: 180 TSFMMVPFVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT-DHIDQWNK 238
Query: 622 VGQQLRFP 629
           V +QL  P
Sbjct: 239 VIEQLGTP 246

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 68/181 (37%), Gaps = 20/181 (11%)
Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL-ASRKKLTRAQTERE------ 383
           S   + K +G GD G V         CY  ++V  +  +  + K L    TER+      
Sbjct: 49  SRIHIEKIIGSGDSGEV---------CYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLS 99
Query: 384 ---ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFXXX 440
              I+   DHP +  L       R + +V EY   G L T  +   G+ F+         
Sbjct: 100 EASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQ-FTIMQLVGMLR 158
Query: 441 XXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPS 500
                      LG V+RDL   NVLV  +    +SDF LS      P    T++    P 
Sbjct: 159 GVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPI 218
Query: 501 R 501
           R
Sbjct: 219 R 219

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 571 GTHEYLAPEIIKGEG--HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV-GQQLR 627
           GT+E++ PE    E   +G+ VD W+ GI L+ + Y   PF    +   LFN +  + + 
Sbjct: 212 GTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIE 271
Query: 628 FP 629
           +P
Sbjct: 272 YP 273

>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp Length = 335

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 374 KLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME-YCPGGDLHTLRQRQPGKHFSE 432
           KL +   E  IL  ++H  +  +   FE   F  LVME +  G DL     R P     E
Sbjct: 72  KLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHP--RLDE 129
Query: 433 YAARFXXXXXXXXXXXXHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
             A +             +  +++RD+K EN+++ +D  I L DF
Sbjct: 130 PLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDF 174

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           +V T  Y APE+I G G+   VD W+ G+ + E++ G   F G+ +    +N V +QL  
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGGVLFPGT-DHIDQWNKVIEQLGT 243
Query: 629 PDSPATSYASRDLIRGLLVKEPQH 652
           P SP      +  +R  +   P++
Sbjct: 244 P-SPEFMKKLQPTVRTYVENRPKY 266

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	730
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	7e-60
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	3e-37
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	2e-59
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	7e-39
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-59
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	3e-43
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	1e-56
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	1e-36
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	6e-56
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	1e-38
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	4e-55
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	2e-34
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	5e-55
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-37
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	2e-54
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	9e-38
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-53
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	7e-37
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	2e-53
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	4e-39
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	4e-53
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	1e-35
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	4e-53
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	1e-39
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	2e-52
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	2e-36
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	2e-52
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	1e-39
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	3e-52
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	4e-37
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	3e-52
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	3e-35
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	3e-52
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	1e-34
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	1e-51
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	6e-37
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	1e-51
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	1e-36
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	4e-51
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	3e-36
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	2e-50
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	1e-35
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-47
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-26
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	4e-47
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	9e-28
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	7e-47
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	2e-34
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	6e-43
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-40
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-19
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	3e-40
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	8e-26
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-39
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-20
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	5e-39
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	5e-18
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	8e-39
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-22
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-38
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	4e-14
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-37
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	8e-20
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	5e-37
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	4e-19
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-36
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	3e-16
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-35
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-12
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-35
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-15
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-35
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	9e-13
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-35
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	4e-15
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	4e-35
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	8e-18
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	4e-35
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	3e-15
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	7e-35
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	3e-15
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	1e-34
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-11
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	2e-34
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-15
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-34
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-13
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-34
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-15
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	3e-34
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-12
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	3e-34
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-14
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	4e-34
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-15
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	5e-34
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-15
2a19_B	284	Interferon-induced, double-stranded RNA-activated	5e-34
2a19_B	284	Interferon-induced, double-stranded RNA-activated	8e-16
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-33
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	1e-13
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-33
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-16
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-33
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-16
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-33
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-18
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	2e-33
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	8e-16
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-33
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-16
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	5e-33
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-15
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	5e-33
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	2e-16
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	7e-33
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	6e-14
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	9e-33
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	1e-16
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-32
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-17
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-32
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	9e-16
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-32
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-18
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	1e-32
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	7e-15
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-32
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-14
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-32
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	8e-18
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	3e-32
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-17
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-32
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-15
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	1e-31
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	1e-15
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-31
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	3e-14
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-31
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-15
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	3e-31
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	4e-19
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	4e-31
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	3e-15
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	5e-31
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-12
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	6e-31
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	5e-16
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	7e-31
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	3e-16
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	1e-30
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	4e-15
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-30
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-10
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	1e-30
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	2e-16
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	4e-30
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	3e-13
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	5e-30
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	6e-17
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	9e-30
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	1e-14
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-29
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	5e-13
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	2e-29
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	5e-14
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	6e-29
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	5e-14
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	4e-28
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	5e-14
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	7e-28
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	3e-15
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	8e-28
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-15
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	3e-27
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-14
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	7e-27
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	8e-19
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	2e-26
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	2e-11
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-26
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	5e-15
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-26
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-13
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	3e-26
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	6e-15
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	8e-26
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	1e-12
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	3e-25
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	5e-25
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	5e-14
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	5e-25
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-24
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	4e-11
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	8e-24
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	3e-19
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-23
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	8e-05
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	3e-23
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-13
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	6e-23
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-07
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-22
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	9e-07
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-22
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	9e-07
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	6e-22
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	8e-07
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-21
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-07
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-21
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-21
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-04
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-21
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-06
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	3e-21
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	6e-17
3uqc_A	286	Probable conserved transmembrane protein; structur	8e-21
3uqc_A	286	Probable conserved transmembrane protein; structur	8e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-20
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	4e-08
2dyl_A	318	Dual specificity mitogen-activated protein kinase	4e-20
2dyl_A	318	Dual specificity mitogen-activated protein kinase	2e-09
3aln_A	327	Dual specificity mitogen-activated protein kinase;	7e-20
3aln_A	327	Dual specificity mitogen-activated protein kinase;	3e-08
3fme_A	290	Dual specificity mitogen-activated protein kinase;	1e-19
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-08
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-19
3an0_A	340	Dual specificity mitogen-activated protein kinase;	1e-07
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	8e-19
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	4e-07
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-18
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-10
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	2e-18
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	2e-06
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	2e-18
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	4e-18
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	8e-18
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-17
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-17
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	5e-10
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	3e-17
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	7e-12
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	4e-17
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	5e-17
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	8e-17
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-16
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	1e-16
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	8e-08
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-16
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-16
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-08
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	3e-16
3soc_A	322	Activin receptor type-2A; structural genomics cons	3e-16
3ork_A	311	Serine/threonine protein kinase; structural genomi	5e-16
3ork_A	311	Serine/threonine protein kinase; structural genomi	2e-06
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	8e-16
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	4e-05
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	9e-16
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	4e-05
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	9e-16
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	1e-15
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	7e-04
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-15
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	3e-10
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	2e-15
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	3e-15
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-04
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	5e-15
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	8e-05
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	6e-15
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	6e-15
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	7e-15
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	8e-15
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-05
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-14
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-14
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-14
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	8e-04
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-14
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	4e-14
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	3e-12
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	4e-14
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	5e-14
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	6e-14
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	4e-04
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	6e-14
3o0g_A	292	Cell division protein kinase 5; kinase activator c	7e-14
3o0g_A	292	Cell division protein kinase 5; kinase activator c	5e-04
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	8e-14
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	9e-14
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-10
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	1e-13
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	9e-05
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	1e-13
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	3e-05
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-13
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-13
3niz_A	311	Rhodanese family protein; structural genomics, str	1e-05
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	2e-13
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	1e-04
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	2e-13
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	2e-04
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	2e-13
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	2e-05
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	2e-13
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	1e-04
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-13
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-13
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	5e-13
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	7e-13
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	8e-13
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	9e-13
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	9e-13
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	1e-12
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-12
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-12
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-05
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-12
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-12
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	7e-04
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	3e-12
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	3e-04
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	3e-12
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	3e-12
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	1e-04
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	3e-12
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	3e-04
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	4e-12
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	4e-12
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	4e-12
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	1e-05
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	5e-12
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	5e-12
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	5e-12
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	4e-04
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	6e-12
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	6e-12
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	7e-12
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	8e-12
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-11
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-11
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-11
4aoj_A	329	High affinity nerve growth factor receptor; transf	2e-11
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-11
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	2e-11
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	3e-11
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	3e-04
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	3e-11
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-11
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	3e-11
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	1e-04
3pls_A	298	Macrophage-stimulating protein receptor; protein k	4e-11
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	4e-11
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	5e-11
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	5e-11
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	6e-11
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	6e-11
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	7e-11
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	7e-11
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	7e-11
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	8e-11
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	8e-11
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	7e-05
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	9e-11
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	1e-10
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	2e-10
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	5e-05
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-10
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	2e-10
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-10
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	4e-10
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	7e-10
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	7e-10
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	7e-10
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	8e-10
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	2e-09
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	3e-05
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	5e-09
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	3e-04
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	8e-09
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-08
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-08
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-08
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-07
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	4e-07
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	2e-04

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score =  206 bits (527), Expect = 7e-60
 Identities = 61/193 (31%), Positives = 107/193 (55%), Gaps = 4/193 (2%)

Query: 290 GLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYL 349
           G+  +   S +   A   +  +  +W   + +R ++  L    F +LK +G G    V +
Sbjct: 23  GVHQELGASEL---AQDKYVADFLQWAEPIVVRLKEVRLQRDDFEILKVIGRGAFSEVAV 79

Query: 350 SELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV 409
            ++  T   +AMK+M+K  +  R +++  + ER++L   D  ++  L+  F+ + +  LV
Sbjct: 80  VKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLV 139

Query: 410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD 469
           MEY  GGDL TL  +  G+      ARFY AE+++A++ +H LG V+RD+KP+N+L+   
Sbjct: 140 MEYYVGGDLLTLLSKF-GERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRC 198

Query: 470 GHIMLSDFDLSLR 482
           GHI L+DF   L+
Sbjct: 199 GHIRLADFGSCLK 211

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score =  143 bits (363), Expect = 3e-37
 Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 12/133 (9%)

Query: 565 RSMSFVGTHEYLAPEIIKGEG-------HGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
           RS+  VGT +YL+PEI++  G       +G   DWW  G+F +E+ YG+TPF       T
Sbjct: 219 RSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAET 278

Query: 618 LFNVVGQQLRFP---DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
              +V  +               +RD I+ LL   P+ RLG + GA + + HPFF G++W
Sbjct: 279 YGKIVHYKEHLSLPLVDEGVPEEARDFIQRLL-CPPETRLG-RGGAGDFRTHPFFFGLDW 336

Query: 675 ALIRCSTPPEVPR 687
             +R S PP  P 
Sbjct: 337 DGLRDSVPPFTPD 349

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score =  205 bits (523), Expect = 2e-59
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 291 LSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLS 350
           L  D ++  +       +  N          + RD  +    + ++K +G G  G V L 
Sbjct: 32  LVYDLDFPAL---RKNKNIDNFLSRYKDTINKIRDLRMKAEDYEVVKVIGRGAFGEVQLV 88

Query: 351 ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM 410
              STR  +AMK++ K  +  R        ER+I+   + P++  L+  F+ DR+  +VM
Sbjct: 89  RHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVM 148

Query: 411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG 470
           EY PGGDL  L          E  ARFY AEV+LAL+ +H +G ++RD+KP+N+L+   G
Sbjct: 149 EYMPGGDLVNLMSNYD---VPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG 205

Query: 471 HIMLSDFDLSLRCAVSPTLIKTSSL 495
           H+ L+DF   ++       ++  + 
Sbjct: 206 HLKLADFGTCMKMNKEGM-VRCDTA 229

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score =  148 bits (375), Expect = 7e-39
 Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 10/131 (7%)

Query: 565 RSMSFVGTHEYLAPEIIKGEG----HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN 620
           R  + VGT +Y++PE++K +G    +G   DWW+ G+FL+E+L G TPF       T   
Sbjct: 225 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSK 284

Query: 621 VVGQQ--LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA--L 676
           ++  +  L FPD    S  +++LI   L  + + RLG + G  EIK+H FF+   WA   
Sbjct: 285 IMNHKNSLTFPDDNDISKEAKNLICAFL-TDREVRLG-RNGVEEIKRHLFFKNDQWAWET 342

Query: 677 IRCSTPPEVPR 687
           +R +  P VP 
Sbjct: 343 LRDTVAPVVPD 353

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score =  202 bits (515), Expect = 2e-59
 Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 2/168 (1%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
                F+  K LG G   +V L+   +T   +A+K+++K  +    K+     ER+++  
Sbjct: 27  KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 86

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           LDHPF   LY  F+ D      + Y   G+L    ++     F E   RFY AE++ ALE
Sbjct: 87  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALE 144

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL 495
           YLH  G+++RDLKPEN+L+ +D HI ++DF  +   +      + +S 
Sbjct: 145 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSF 192

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score =  157 bits (399), Expect = 3e-43
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 6/134 (4%)

Query: 556 ELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR 615
            L  E   AR+ SFVGT +Y++PE++  +    + D W  G  +++L+ G  PF+  GN 
Sbjct: 179 VLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA-GNE 237

Query: 616 ATLF-NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG--VKRGATEIKQHPFFEGV 672
             +F  ++  +  FP        +RDL+  LLV +   RLG     G   +K HPFFE V
Sbjct: 238 YLIFQKIIKLEYDFP--EKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESV 295

Query: 673 NWALIRCSTPPEVP 686
            W  +   TPP++ 
Sbjct: 296 TWENLHQQTPPKLT 309

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score =  198 bits (505), Expect = 1e-56
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 1/225 (0%)

Query: 258 SMERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKA 317
           S E      +  +     ++     S  +    L    +  N +    + +      W  
Sbjct: 1   SGEVRLRQLEQFILDGPAQTNGQCFSVETLLDILICLYDECNNSPLRREKNILEYLEWAK 60

Query: 318 ILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTR 377
               + +   L    F +LK +G G  G V + +L +    FAMK+++K  +  R +   
Sbjct: 61  PFTSKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETAC 120

Query: 378 AQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARF 437
            + ER++L   D  ++ TL+  F+ D    LVM+Y  GGDL TL  +   +   E  ARF
Sbjct: 121 FREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDR-LPEEMARF 179

Query: 438 YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR 482
           Y AE+++A++ +H L  V+RD+KP+N+L+  +GHI L+DF   L+
Sbjct: 180 YLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLK 224

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score =  142 bits (359), Expect = 1e-36
 Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 10/132 (7%)

Query: 564 ARSMSFVGTHEYLAPEIIKGE-----GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
            +S   VGT +Y++PEI++        +G   DWW+ G+ ++E+LYG+TPF       T 
Sbjct: 231 VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETY 290

Query: 619 FNVVGQQLRFP---DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA 675
             ++  + RF         S  ++DLIR L+    +HRLG + G  + K+HPFF G++W 
Sbjct: 291 GKIMNHKERFQFPTQVTDVSENAKDLIRRLICS-REHRLG-QNGIEDFKKHPFFSGIDWD 348

Query: 676 LIRCSTPPEVPR 687
            IR    P +P 
Sbjct: 349 NIRNCEAPYIPE 360

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score =  193 bits (492), Expect = 6e-56
 Identities = 57/153 (37%), Positives = 92/153 (60%), Gaps = 2/153 (1%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
             +  F++L+ LG G  G V+L        Y+AMKV+ K  +   K++     ER +L +
Sbjct: 3   YSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSI 62

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           + HPF+  ++  F+  +   ++M+Y  GG+L +L ++   + F    A+FYAAEV LALE
Sbjct: 63  VTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALE 120

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           YLH   ++YRDLKPEN+L+  +GHI ++DF  +
Sbjct: 121 YLHSKDIIYRDLKPENILLDKNGHIKITDFGFA 153

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score =  144 bits (367), Expect = 1e-38
 Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 7/127 (5%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVG 623
            + +  GT +Y+APE++  + +  ++DWW+FGI ++E+L G TPF  S N    +  ++ 
Sbjct: 159 VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS-NTMKTYEKILN 217

Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI--RCS 680
            +LRFP  P  +   +DL+  L+ ++   RLG ++ G  ++K HP+F+ V W  +  R  
Sbjct: 218 AELRFP--PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNI 275

Query: 681 TPPEVPR 687
             P  P 
Sbjct: 276 ETPYEPP 282

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score =  192 bits (491), Expect = 4e-55
 Identities = 48/153 (31%), Positives = 90/153 (58%), Gaps = 2/153 (1%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           +   HF +L+ +G G  G V + + + T+  +AMK M+K     R ++     E +I+Q 
Sbjct: 12  VNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQG 71

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           L+HPFL  L+  F+ +    +V++   GGDL    Q+    HF E   + +  E+++AL+
Sbjct: 72  LEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQN--VHFKEETVKLFICELVMALD 129

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           YL    +++RD+KP+N+L+ + GH+ ++DF+++
Sbjct: 130 YLQNQRIIHRDMKPDNILLDEHGHVHITDFNIA 162

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score =  134 bits (340), Expect = 2e-34
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 13/130 (10%)

Query: 565 RSMSFVGTHEYLAPEII---KGEGHGSAVDWWTFGIFLHELLYGKTPF--KGSGNRATLF 619
           +  +  GT  Y+APE+    KG G+  AVDWW+ G+  +ELL G+ P+  + S +   + 
Sbjct: 170 QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIV 229

Query: 620 -NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI- 677
                  + +P   A S     L++ LL   P  R       ++++  P+   +NW  + 
Sbjct: 230 HTFETTVVTYP--SAWSQEMVSLLKKLLEPNPDQRFS---QLSDVQNFPYMNDINWDAVF 284

Query: 678 -RCSTPPEVP 686
            +   P  +P
Sbjct: 285 QKRLIPGFIP 294

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score =  191 bits (488), Expect = 5e-55
 Identities = 63/190 (33%), Positives = 101/190 (53%), Gaps = 13/190 (6%)

Query: 302 GSANKPHKGNDPRWKAILAIRARDGI-----------LGMSHFRLLKRLGCGDIGSVYLS 350
           G+A    KG++         +A++               +  F  +K LG G  G V L 
Sbjct: 1   GNAAAAKKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLV 60

Query: 351 ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM 410
           +   +  ++AMK++DK  +   K++     E+ ILQ ++ PFL  L   F+ +    +VM
Sbjct: 61  KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120

Query: 411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG 470
           EY  GG++ +  +R     FSE  ARFYAA+++L  EYLH L ++YRDLKPEN+L+   G
Sbjct: 121 EYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQG 178

Query: 471 HIMLSDFDLS 480
           +I ++DF  +
Sbjct: 179 YIQVTDFGFA 188

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score =  142 bits (361), Expect = 2e-37
 Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 7/127 (5%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVG 623
           R+ +  GT E LAPEII  +G+  AVDWW  G+ ++E+  G  PF        ++  +V 
Sbjct: 194 RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD-QPIQIYEKIVS 252

Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI--RCS 680
            ++RFP     S   +DL+R LL  +   R G +K G  +IK H +F   +W  I  R  
Sbjct: 253 GKVRFP--SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKV 310

Query: 681 TPPEVPR 687
             P +P+
Sbjct: 311 EAPFIPK 317

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score =  189 bits (483), Expect = 2e-54
 Identities = 65/153 (42%), Positives = 90/153 (58%), Gaps = 2/153 (1%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           + M+ F  LK LG G  G V L    +T  Y+AMK++ K  + ++ ++    TE  +LQ 
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN 61

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
             HPFL  L   F+T    C VMEY  GG+L     R+  + F+E  ARFY AE++ ALE
Sbjct: 62  TRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALE 119

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           YLH   VVYRD+K EN+++  DGHI ++DF L 
Sbjct: 120 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGLC 152

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score =  143 bits (362), Expect = 9e-38
 Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 7/128 (5%)

Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVV 622
           A   +F GT EYLAPE+++   +G AVDWW  G+ ++E++ G+ PF    +   LF  ++
Sbjct: 160 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-DHERLFELIL 218

Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RC 679
            +++RFP     S  ++ L+ GLL K+P+ RLG     A E+ +H FF  +NW  +  + 
Sbjct: 219 MEEIRFP--RTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKK 276

Query: 680 STPPEVPR 687
             PP  P+
Sbjct: 277 LLPPFKPQ 284

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score =  192 bits (489), Expect = 2e-53
 Identities = 57/155 (36%), Positives = 84/155 (54%), Gaps = 2/155 (1%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           +G   F   + LG G  G V+  ++ +T   +A K ++K  L  RK    A  E++IL  
Sbjct: 182 MGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAK 241

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLA 445
           +   F+ +L   FET    CLVM    GGD+  H     +    F E  A FY A+++  
Sbjct: 242 VHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSG 301

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           LE+LH   ++YRDLKPENVL+ DDG++ +SD  L+
Sbjct: 302 LEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLA 336

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score =  144 bits (366), Expect = 7e-37
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 14/156 (8%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT---LF-N 620
           ++  + GT  ++APE++ GE +  +VD++  G+ L+E++  + PF+  G +     L   
Sbjct: 345 KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQR 404

Query: 621 VVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI-- 677
           V+ Q + +PD    S AS+D    LL K+P+ RLG +      ++ HP F  ++W  +  
Sbjct: 405 VLEQAVTYPDK--FSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEA 462

Query: 678 RCSTPPEVPRPMEAEL-----PGKFGAVDPVGVSSS 708
              TPP VP             G F  V  V    +
Sbjct: 463 GMLTPPFVPDSRTVYAKNIQDVGAFSTVKGVAFEKA 498

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score =  186 bits (474), Expect = 2e-53
 Identities = 60/157 (38%), Positives = 87/157 (55%), Gaps = 6/157 (3%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSE---LSSTRCYFAMKVMDKASLASRKK-LTRAQTERE 383
           +    F LL+ LG G  G V+       ++T   FAMKV+ KA +    K     + ER 
Sbjct: 14  IRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERN 73

Query: 384 ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVL 443
           IL+ + HPF+  L   F+T     L++EY  GG+L    +R+    F E  A FY AE+ 
Sbjct: 74  ILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLERE--GIFMEDTACFYLAEIS 131

Query: 444 LALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +AL +LH  G++YRDLKPEN+++   GH+ L+DF L 
Sbjct: 132 MALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLC 168

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score =  146 bits (371), Expect = 4e-39
 Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 7/128 (5%)

Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVV 622
             + +F GT EY+APEI+   GH  AVDWW+ G  ++++L G  PF G  NR      ++
Sbjct: 176 TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE-NRKKTIDKIL 234

Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI--RC 679
             +L  P     +  +RDL++ LL +    RLG     A E++ HPFF  +NW  +  R 
Sbjct: 235 KCKLNLPPY--LTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARK 292

Query: 680 STPPEVPR 687
             PP  P 
Sbjct: 293 VEPPFKPL 300

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score =  186 bits (474), Expect = 4e-53
 Identities = 63/154 (40%), Positives = 91/154 (59%), Gaps = 3/154 (1%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           LG+  F LL+ +G G    V L  L  T   +AMKV+ K  +   + +   QTE+ + + 
Sbjct: 6   LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQ 65

Query: 388 -LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
             +HPFL  L++ F+T+     V+EY  GGDL    QRQ  +   E  ARFY+AE+ LAL
Sbjct: 66  ASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLAL 123

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            YLH  G++YRDLK +NVL+  +GHI L+D+ + 
Sbjct: 124 NYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMC 157

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score =  137 bits (347), Expect = 1e-35
 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 15/136 (11%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG--------NRA 616
            + +F GT  Y+APEI++GE +G +VDWW  G+ + E++ G++PF   G           
Sbjct: 166 TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTED 225

Query: 617 TLF-NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV--KRGATEIKQHPFFEGVN 673
            LF  ++ +Q+R P S   S  +  +++  L K+P+ RLG   + G  +I+ HPFF  V+
Sbjct: 226 YLFQVILEKQIRIPRS--LSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVD 283

Query: 674 WALI--RCSTPPEVPR 687
           W ++  +   PP  P 
Sbjct: 284 WDMMEQKQVVPPFKPN 299

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score =  185 bits (472), Expect = 4e-53
 Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 6/156 (3%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSS---TRCYFAMKVMDKASLASRKKLTRAQTEREI 384
              S F LLK LG G  G V+L +  S    R  +AMKV+ KA+L  R +  R + ER+I
Sbjct: 21  ADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDR-VRTKMERDI 79

Query: 385 LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 444
           L  ++HPF+  L+  F+T+    L++++  GGDL T   ++    F+E   +FY AE+ L
Sbjct: 80  LVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELAL 137

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           AL++LH LG++YRDLKPEN+L+ ++GHI L+DF LS
Sbjct: 138 ALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 173

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score =  148 bits (375), Expect = 1e-39
 Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 7/128 (5%)

Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVV 622
            ++ SF GT EY+APE++   GH  + DWW+FG+ + E+L G  PF+G  +R      ++
Sbjct: 181 KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK-DRKETMTMIL 239

Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNW-ALIRCS 680
             +L  P     S  ++ L+R L  + P +RLG    G  EIK+H FF  ++W  L R  
Sbjct: 240 KAKLGMP--QFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRRE 297

Query: 681 -TPPEVPR 687
             PP  P 
Sbjct: 298 IHPPFKPA 305

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score =  190 bits (484), Expect = 2e-52
 Identities = 57/153 (37%), Positives = 82/153 (53%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           +  + FR  + LG G  G V   ++ +T   +A K ++K  +  RK    A  E++IL+ 
Sbjct: 181 VTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEK 240

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           ++  F+ +L   +ET    CLV+    GGDL           F E  A FYAAE+   LE
Sbjct: 241 VNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLE 300

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            LH   +VYRDLKPEN+L+ D GHI +SD  L+
Sbjct: 301 DLHRERIVYRDLKPENILLDDHGHIRISDLGLA 333

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score =  144 bits (364), Expect = 2e-36
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL----FN 620
                VGT  Y+APE++K E +  + DWW  G  L+E++ G++PF+    +         
Sbjct: 341 TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERL 400

Query: 621 VVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI-- 677
           V      + +    S  +R L   LL K+P  RLG +   A E+K+HP F+ +N+  +  
Sbjct: 401 VKEVPEEYSER--FSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGA 458

Query: 678 RCSTPPEVPRP 688
               PP  P P
Sbjct: 459 GMLEPPFKPDP 469

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score =  185 bits (471), Expect = 2e-52
 Identities = 63/154 (40%), Positives = 91/154 (59%), Gaps = 3/154 (1%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-Q 386
              S F  LK +G G  G V L+   +   ++A+KV+ K ++  +K+     +ER +L +
Sbjct: 35  AKPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLK 94

Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
            + HPFL  L+  F+T      V++Y  GG+L    QR+  + F E  ARFYAAE+  AL
Sbjct: 95  NVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASAL 152

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            YLH L +VYRDLKPEN+L+   GHI+L+DF L 
Sbjct: 153 GYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLC 186

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score =  148 bits (377), Expect = 1e-39
 Identities = 50/126 (39%), Positives = 70/126 (55%), Gaps = 6/126 (4%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVG 623
            + +F GT EYLAPE++  + +   VDWW  G  L+E+LYG  PF    N A ++ N++ 
Sbjct: 195 TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR-NTAEMYDNILN 253

Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW-ALIRCS-T 681
           + L+    P  + ++R L+ GLL K+   RLG K    EIK H FF  +NW  LI    T
Sbjct: 254 KPLQLK--PNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKIT 311

Query: 682 PPEVPR 687
           PP  P 
Sbjct: 312 PPFNPN 317

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score =  184 bits (469), Expect = 3e-52
 Identities = 67/202 (33%), Positives = 111/202 (54%), Gaps = 7/202 (3%)

Query: 284 RASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGD 343
              +  G S  +  ++  G                  +      +G+ +F LLK LG G 
Sbjct: 7   HHEEEGGSSGGAAGTSADGGDGGEQLLTVKHELRTANLTGHAEKVGIENFELLKVLGTGA 66

Query: 344 IGSVYLSELSS---TRCYFAMKVMDKASLASRKKLT-RAQTEREILQLLDH-PFLPTLYT 398
            G V+L    S   T   +AMKV+ KA++  + K T   +TER++L+ +   PFL TL+ 
Sbjct: 67  YGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHY 126

Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRD 458
            F+T+    L+++Y  GG+L T   ++  + F+E+  + Y  E++LALE+LH LG++YRD
Sbjct: 127 AFQTETKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKLGIIYRD 184

Query: 459 LKPENVLVRDDGHIMLSDFDLS 480
           +K EN+L+  +GH++L+DF LS
Sbjct: 185 IKLENILLDSNGHVVLTDFGLS 206

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score =  141 bits (358), Expect = 4e-37
 Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 11/132 (8%)

Query: 565 RSMSFVGTHEYLAPEIIKGE--GHGSAVDWWTFGIFLHELLYGKTPFKGSG---NRATLF 619
           R+  F GT EY+AP+I++G   GH  AVDWW+ G+ ++ELL G +PF   G   ++A + 
Sbjct: 216 RAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEIS 275

Query: 620 -NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI 677
             ++  +  +P     S  ++DLI+ LL+K+P+ RLG   R A EIK+H FF+ +NW  +
Sbjct: 276 RRILKSEPPYPQE--MSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDL 333

Query: 678 --RCSTPPEVPR 687
             +    P  P 
Sbjct: 334 AAKKVPAPFKPV 345

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score =  183 bits (468), Expect = 3e-52
 Identities = 60/154 (38%), Positives = 85/154 (55%), Gaps = 3/154 (1%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           L +  F L K LG G  G V+L+E   T  +FA+K + K  +     +     E+ +L L
Sbjct: 14  LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSL 73

Query: 388 -LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
             +HPFL  ++  F+T      VMEY  GGDL    Q      F    A FYAAE++L L
Sbjct: 74  AWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGL 131

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++LH  G+VYRDLK +N+L+  DGHI ++DF + 
Sbjct: 132 QFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMC 165

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score =  136 bits (344), Expect = 3e-35
 Identities = 44/126 (34%), Positives = 74/126 (58%), Gaps = 9/126 (7%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVG 623
           ++ +F GT +Y+APEI+ G+ +  +VDWW+FG+ L+E+L G++PF G  +   LF ++  
Sbjct: 174 KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ-DEEELFHSIRM 232

Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI--RCST 681
               +P        ++DL+  L V+EP+ RLG      +I+QHP F  +NW  +  +   
Sbjct: 233 DNPFYP--RWLEKEAKDLLVKLFVREPEKRLG---VRGDIRQHPLFREINWEELERKEID 287

Query: 682 PPEVPR 687
           PP  P+
Sbjct: 288 PPFRPK 293

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score =  185 bits (471), Expect = 3e-52
 Identities = 62/154 (40%), Positives = 91/154 (59%), Gaps = 3/154 (1%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           LG+  F LL+ +G G    V L  L  T   +AM+V+ K  +   + +   QTE+ + + 
Sbjct: 49  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQ 108

Query: 388 -LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
             +HPFL  L++ F+T+     V+EY  GGDL    QRQ  +   E  ARFY+AE+ LAL
Sbjct: 109 ASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLAL 166

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            YLH  G++YRDLK +NVL+  +GHI L+D+ + 
Sbjct: 167 NYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMC 200

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score =  135 bits (342), Expect = 1e-34
 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 15/136 (11%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG--------NRA 616
            + +F GT  Y+APEI++GE +G +VDWW  G+ + E++ G++PF   G           
Sbjct: 209 TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTED 268

Query: 617 TLF-NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV--KRGATEIKQHPFFEGVN 673
            LF  ++ +Q+R P S   S  +  +++  L K+P+ RLG   + G  +I+ HPFF  V+
Sbjct: 269 YLFQVILEKQIRIPRS--LSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVD 326

Query: 674 WALI--RCSTPPEVPR 687
           W ++  +   PP  P 
Sbjct: 327 WDMMEQKQVVPPFKPN 342

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score =  182 bits (464), Expect = 1e-51
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 7/156 (4%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           + ++ F  L  LG G  G V LSE   T   +A+K++ K  +     +     E+ +L L
Sbjct: 17  MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLAL 76

Query: 388 LD-HPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLL 444
               PFL  L++ F+T      VMEY  GGDL  H  +       F E  A FYAAE+ +
Sbjct: 77  PGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVG----RFKEPHAVFYAAEIAI 132

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            L +L   G++YRDLK +NV++  +GHI ++DF + 
Sbjct: 133 GLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMC 168

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score =  141 bits (357), Expect = 6e-37
 Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 7/127 (5%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVG 623
            + +F GT +Y+APEII  + +G +VDWW FG+ L+E+L G+ PF+G  +   LF +++ 
Sbjct: 177 TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-DEDELFQSIME 235

Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCS 680
             + +P S   S  +  + +GL+ K P  RLG    G  +IK+H FF  ++W  +  +  
Sbjct: 236 HNVAYPKS--MSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEI 293

Query: 681 TPPEVPR 687
            PP  P+
Sbjct: 294 QPPYKPK 300

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score =  182 bits (464), Expect = 1e-51
 Identities = 62/156 (39%), Positives = 90/156 (57%), Gaps = 7/156 (4%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           LG+ +F  ++ LG G  G V L+ +  T   +A+KV+ K  +     +    TE+ IL L
Sbjct: 20  LGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSL 79

Query: 388 -LDHPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLL 444
             +HPFL  L+  F+T      VME+  GGDL  H  + R+    F E  ARFYAAE++ 
Sbjct: 80  ARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSRR----FDEARARFYAAEIIS 135

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           AL +LH  G++YRDLK +NVL+  +GH  L+DF + 
Sbjct: 136 ALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMC 171

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score =  140 bits (354), Expect = 1e-36
 Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 8/129 (6%)

Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVV 622
             + +F GT +Y+APEI++   +G AVDWW  G+ L+E+L G  PF+   N   LF  ++
Sbjct: 179 VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE-NEDDLFEAIL 237

Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV--KRGATEIKQHPFFEGVNWALI--R 678
             ++ +P        +  +++  + K P  RLG   + G   I +HPFF+ ++WA +  R
Sbjct: 238 NDEVVYPTW--LHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQLNHR 295

Query: 679 CSTPPEVPR 687
              PP  PR
Sbjct: 296 QIEPPFRPR 304

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score =  183 bits (467), Expect = 4e-51
 Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 7/206 (3%)

Query: 276 ESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRL 335
           E   T+I   +D       +     +GS +      +      +++      + M+ F  
Sbjct: 97  EEWTTAIQTVADGLKKQAAAEMDFRSGSPSDNSGAEEME----VSLAKPKHRVTMNEFEY 152

Query: 336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPT 395
           LK LG G  G V L +  +T  Y+AMK++ K  + ++ ++    TE  +LQ   HPFL  
Sbjct: 153 LKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTA 212

Query: 396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGV 454
           L   F+T    C VMEY  GG+L     R+  + FSE  ARFY AE++ AL+YLH    V
Sbjct: 213 LKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEKNV 270

Query: 455 VYRDLKPENVLVRDDGHIMLSDFDLS 480
           VYRDLK EN+++  DGHI ++DF L 
Sbjct: 271 VYRDLKLENLMLDKDGHIKITDFGLC 296

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score =  141 bits (357), Expect = 3e-36
 Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 7/128 (5%)

Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVV 622
           A   +F GT EYLAPE+++   +G AVDWW  G+ ++E++ G+ PF    +   LF  ++
Sbjct: 304 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-DHEKLFELIL 362

Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RC 679
            +++RFP        ++ L+ GLL K+P+ RLG     A EI QH FF G+ W  +  + 
Sbjct: 363 MEEIRFP--RTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKK 420

Query: 680 STPPEVPR 687
            +PP  P+
Sbjct: 421 LSPPFKPQ 428

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score =  187 bits (475), Expect = 2e-50
 Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 5/156 (3%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           L M+ F + + +G G  G VY    + T   +AMK +DK  +  ++  T A  ER +L L
Sbjct: 186 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSL 245

Query: 388 L---DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 444
           +   D PF+  +   F T      +++   GGDLH    +     FSE   RFYAAE++L
Sbjct: 246 VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIIL 303

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            LE++H   VVYRDLKP N+L+ + GH+ +SD  L+
Sbjct: 304 GLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 339

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score =  142 bits (360), Expect = 1e-35
 Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 9/140 (6%)

Query: 565 RSMSFVGTHEYLAPEII-KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG--NRATLF-N 620
           +  + VGTH Y+APE++ KG  + S+ DW++ G  L +LL G +PF+     ++  +   
Sbjct: 346 KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRM 405

Query: 621 VVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG-VKRGATEIKQHPFFEGVNWALI-- 677
            +   +  PDS   S   R L+ GLL ++   RLG + RGA E+K+ PFF  ++W ++  
Sbjct: 406 TLTMAVELPDS--FSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFL 463

Query: 678 RCSTPPEVPRPMEAELPGKF 697
           +   PP +P   E      F
Sbjct: 464 QKYPPPLIPPRGEVNAADAF 483

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score =  168 bits (428), Expect = 2e-47
 Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 2/151 (1%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F + + LG G  G+VYL+     +   A+KV+ K+ L       + + E EI   L 
Sbjct: 13  IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLR 72

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           HP +  +Y +F   +   L++E+ P G+L+   Q+     F E  +  +  E+  AL Y 
Sbjct: 73  HPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKH--GRFDEQRSATFMEELADALHYC 130

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           H   V++RD+KPEN+L+   G + ++DF  S
Sbjct: 131 HERKVIHRDIKPENLLMGYKGELKIADFGWS 161

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score =  108 bits (272), Expect = 2e-26
 Identities = 40/116 (34%), Positives = 55/116 (47%), Gaps = 10/116 (8%)

Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT +YL PE+I+G+ H   VD W  G+  +E L G  PF    +  T   +V   L+FP 
Sbjct: 174 GTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPP 233

Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP 686
               S  S+DLI  LL   P  RL +K     + +HP+ +    A  R   PP   
Sbjct: 234 F--LSDGSKDLISKLLRYHPPQRLPLK----GVMEHPWVK----ANSRRVLPPVYQ 279

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score =  167 bits (425), Expect = 4e-47
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 2/158 (1%)

Query: 323 ARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTER 382
           ++     +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E 
Sbjct: 1   SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 60

Query: 383 EILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEV 442
           EI   L HP +  LY +F       L++EY P G ++   Q+     F E     Y  E+
Sbjct: 61  EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITEL 118

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             AL Y H   V++RD+KPEN+L+   G + ++DF  S
Sbjct: 119 ANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 156

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score =  112 bits (282), Expect = 9e-28
 Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           R     GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + T   +   
Sbjct: 163 RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 222

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCST 681
           +  FPD    +  +RDLI  LL   P  R  ++    E+ +HP+    +     C  
Sbjct: 223 EFTFPDF--VTEGARDLISRLLKHNPSQRPMLR----EVLEHPWITANSSKPSNCQN 273

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score =  176 bits (447), Expect = 7e-47
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 7/156 (4%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           + ++ F  L  LG G  G V LSE   T   +A+K++ K  +     +     E+ +L L
Sbjct: 338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLAL 397

Query: 388 -LDHPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLL 444
               PFL  L++ F+T      VMEY  GGDL  H  +  +    F E  A FYAAE+ +
Sbjct: 398 PGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGR----FKEPHAVFYAAEIAI 453

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            L +L   G++YRDLK +NV++  +GHI ++DF + 
Sbjct: 454 GLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMC 489

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score =  139 bits (351), Expect = 2e-34
 Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 7/127 (5%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVG 623
            + +F GT +Y+APEII  + +G +VDWW FG+ L+E+L G+ PF+G  +   LF +++ 
Sbjct: 498 TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-DEDELFQSIME 556

Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCS 680
             + +P S   S  +  + +GL+ K P  RLG    G  +IK+H FF  ++W  +  +  
Sbjct: 557 HNVAYPKS--MSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEI 614

Query: 681 TPPEVPR 687
            PP  P+
Sbjct: 615 QPPYKPK 621

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score =  159 bits (402), Expect = 6e-43
 Identities = 49/386 (12%), Positives = 86/386 (22%), Gaps = 115/386 (29%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL--- 388
                  LG  D  +   +    T   F + V           + + + E   L+LL   
Sbjct: 74  TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGI 133

Query: 389 ----------------------DHPFLPTLYTHFETDRFSCLVMEY-CPGGDLHTL---- 421
                                     +  +               Y     +L T     
Sbjct: 134 KNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVL 193

Query: 422 -RQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                  K    +A      +V+  L  LH  G+V+  L+P ++++   G + L+ F+  
Sbjct: 194 LSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHL 253

Query: 481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKT 540
           +                   R G      V                              
Sbjct: 254 V-------------------RDGARVVSSVSRGFE------------------------- 269

Query: 541 RKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLH 600
                         PEL A            T                + D W  G+ ++
Sbjct: 270 -------------PPELEARRATISYHRDRRTL------------MTFSFDAWALGLVIY 304

Query: 601 ELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGA 660
            +     P            +       P         R L+ G L    + RL      
Sbjct: 305 WIWCADLPITKDAALGGSEWIFRSCKNIPQP------VRALLEGFLRYPKEDRL----LP 354

Query: 661 TEIKQHPFFEGVNWALIRCSTPPEVP 686
            +  + P +E      +R      +P
Sbjct: 355 LQAMETPEYEQ-----LRTELSAALP 375

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score =  150 bits (380), Expect = 1e-40
 Identities = 42/152 (27%), Positives = 57/152 (37%), Gaps = 4/152 (2%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLL 388
              F+ L RLG G  G V+          +A+K          K   R   E     ++ 
Sbjct: 56  QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSP-FRGPKDRARKLAEVGSHEKVG 114

Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
            HP    L   +E      L  E C G  L    +   G    E     Y  + LLAL +
Sbjct: 115 QHPCCVRLEQAWEEGGILYLQTELC-GPSLQQHCEAW-GASLPEAQVWGYLRDTLLALAH 172

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           LH  G+V+ D+KP N+ +   G   L DF L 
Sbjct: 173 LHSQGLVHLDVKPANIFLGPRGRCKLGDFGLL 204

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           TA       G   Y+APE+++G  +G+A D ++ G+ + E+        G      L   
Sbjct: 209 TAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQ- 266

Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
               L    +   S   R ++  +L  +P+ R      A  +   P  
Sbjct: 267 --GYLPPEFTAGLSSELRSVLVMMLEPDPKLRA----TAEALLALPVL 308

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score =  150 bits (381), Expect = 3e-40
 Identities = 31/172 (18%), Positives = 67/172 (38%), Gaps = 23/172 (13%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQT--------- 380
           ++ +R+++ L  G    + L E      ++A+K  +K+ L  ++  T++           
Sbjct: 30  INDYRIIRTLNQGKFNKIILCE--KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKY 87

Query: 381 -----EREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL------HTLRQRQPGKH 429
                E +I+  + + +  T            ++ EY     +        +  +     
Sbjct: 88  DDFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCF 147

Query: 430 FSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                 +     VL +  Y+H    + +RD+KP N+L+  +G + LSDF  S
Sbjct: 148 IPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGES 199

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score =  108 bits (272), Expect = 8e-26
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 24/128 (18%)

Query: 571 GTHEYLAPEIIKGEG--HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVGQQLR 627
           GT+E++ PE    E   +G+ VD W+ GI L+ + Y   PF    +   LF N+  + + 
Sbjct: 212 GTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIE 271

Query: 628 FPDSPAT-----------------SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
           +P                      S    D ++  L K P  R+  +    +  +H +  
Sbjct: 272 YPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSE----DALKHEWLA 327

Query: 671 GVNWALIR 678
             N   +R
Sbjct: 328 DTNIEDLR 335

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  147 bits (373), Expect = 1e-39
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 18/163 (11%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           S F  +  LG G  G V  +  +    Y+A+K +      + +KL+   +E  +L  L+H
Sbjct: 6   SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH----TEEKLSTILSEVMLLASLNH 61

Query: 391 PFLPTLYTHFETDRFS-------------CLVMEYCPGGDLHTLRQRQPGKHFSEYAARF 437
            ++   Y  +   R                + MEYC  G L+ L   +   +        
Sbjct: 62  QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSE-NLNQQRDEYWR 120

Query: 438 YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              ++L AL Y+H  G+++RDLKP N+ + +  ++ + DF L+
Sbjct: 121 LFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLA 163

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 11/106 (10%)

Query: 568 SFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV-GQQ 625
           S +GT  Y+A E++ G GH    +D ++ GI   E++Y      G   R  +   +    
Sbjct: 189 SAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYP--FSTGM-ERVNILKKLRSVS 245

Query: 626 LRFPD--SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           + FP           + +IR L+  +P  R     GA  +    + 
Sbjct: 246 IEFPPDFDDNKMKVEKKIIRLLIDHDPNKRP----GARTLLNSGWL 287

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score =  147 bits (372), Expect = 5e-39
 Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M  +  L+++G G  G   L + +     + +K ++ + + S K+   ++ E  +L  + 
Sbjct: 23  MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRM-SSKEREESRREVAVLANMK 81

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           HP +      FE +    +VM+YC GGDL      Q G  F E     +  ++ LAL+++
Sbjct: 82  HPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHV 141

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           H   +++RD+K +N+ +  DG + L DF ++
Sbjct: 142 HDRKILHRDIKSQNIFLTKDGTVQLGDFGIA 172

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 85.1 bits (211), Expect = 5e-18
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 8/155 (5%)

Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
           V   T   + + +GT  YL+PEI + + + +  D W  G  L+EL   K  F+    +  
Sbjct: 174 VLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNL 233

Query: 618 LFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI 677
           +  ++      P S   SY  R L+  L  + P+ R         I +  F       + 
Sbjct: 234 VLKIISGSFP-PVSLHYSYDLRSLVSQLFKRNPRDRP----SVNSILEKGFIAK---RIE 285

Query: 678 RCSTPPEVPRPMEAELPGKFGAVDPVGVSSSSSKK 712
           +  +P  +      +   KFG+        +S + 
Sbjct: 286 KFLSPQLIAEEFCLKTFSKFGSQPIPAKRPASGQN 320

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score =  144 bits (365), Expect = 8e-39
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F++   LG G    VY +E   T    A+K++DK ++     + R Q E +I   L 
Sbjct: 10  IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLK 69

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
           HP +  LY +FE   +  LV+E C  G++   L+ R   K FSE  AR +  +++  + Y
Sbjct: 70  HPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNR--VKPFSENEARHFMHQIITGMLY 127

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS 493
           LH  G+++RDL   N+L+  + +I ++DF L+ +  +      T 
Sbjct: 128 LHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTL 172

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 96.5 bits (241), Expect = 3e-22
 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT  Y++PEI     HG   D W+ G   + LL G+ PF     + TL  VV      P 
Sbjct: 174 GTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPS 233

Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
               S  ++DLI  LL + P  RL +      +  HPF 
Sbjct: 234 F--LSIEAKDLIHQLLRRNPADRLSLS----SVLDHPFM 266

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score =  144 bits (365), Expect = 2e-38
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 2/170 (1%)

Query: 313 PRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR 372
           P+++   A+R   G   +++FR+ K++G G    VY +         A+K +    L   
Sbjct: 14  PQFQPQKALRPDMGYNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDA 73

Query: 373 KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTL--RQRQPGKHF 430
           K       E ++L+ L+HP +   Y  F  D    +V+E    GDL  +    ++  +  
Sbjct: 74  KARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLI 133

Query: 431 SEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            E     Y  ++  ALE++H   V++RD+KP NV +   G + L D  L 
Sbjct: 134 PERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLG 183

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKG-SGNRATLFNVVGQQL 626
           S VGT  Y++PE I   G+    D W+ G  L+E+   ++PF G   N  +L   + +Q 
Sbjct: 195 SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKI-EQC 253

Query: 627 RFPDSPATSYAS--RDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
            +P  P+  Y+   R L+   +  +P+ R       T +     
Sbjct: 254 DYPPLPSDHYSEELRQLVNMCINPDPEKR----PDVTYVYDVAK 293

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score =  140 bits (355), Expect = 2e-37
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 4/163 (2%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            +   + LG G     +    + T+  FA K++ K+ L    +  +   E  I + L H 
Sbjct: 16  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQ 75

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
            +   +  FE + F  +V+E C    L    ++R   K  +E  AR+Y  +++L  +YLH
Sbjct: 76  HVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLH 132

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS 493
              V++RDLK  N+ + +D  + + DF L+ +        K  
Sbjct: 133 RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVL 175

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 89.6 bits (223), Expect = 8e-20
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT  Y+APE++  +GH   VD W+ G  ++ LL GK PF+ S  + T   +   +   P 
Sbjct: 177 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPK 236

Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
               +  +  LI+ +L  +P  R  +     E+    FF
Sbjct: 237 H--INPVAASLIQKMLQTDPTARPTIN----ELLNDEFF 269

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score =  140 bits (356), Expect = 5e-37
 Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 4/183 (2%)

Query: 298 SNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRC 357
           + + G A        P  K I  +           +   + LG G     +    + T+ 
Sbjct: 10  AGVPGVAAPGAPAAAPPAKEIPEVLVDPRSRR--RYVRGRFLGKGGFAKCFEISDADTKE 67

Query: 358 YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGD 417
            FA K++ K+ L    +  +   E  I + L H  +   +  FE + F  +V+E C    
Sbjct: 68  VFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRS 127

Query: 418 LHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
           L  L +R+  K  +E  AR+Y  +++L  +YLH   V++RDLK  N+ + +D  + + DF
Sbjct: 128 LLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDF 185

Query: 478 DLS 480
            L+
Sbjct: 186 GLA 188

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD 630
           GT  Y+APE++  +GH   VD W+ G  ++ LL GK PF+ S  + T   +   +   P 
Sbjct: 203 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPK 262

Query: 631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
               +  +  LI+ +L  +P  R  +     E+    FF
Sbjct: 263 H--INPVAASLIQKMLQTDPTARPTIN----ELLNDEFF 295

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score =  137 bits (347), Expect = 2e-36
 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 10/160 (6%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
              + +L  +G G  G        S       K +D  S+ +  +     +E  +L+ L 
Sbjct: 5   AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM-TEAEKQMLVSEVNLLRELK 63

Query: 390 HPFLPTLYTHF--ETDRFSCLVMEYCPGGDLHTL--RQRQPGKHFSEYAARFYAAEVLLA 445
           HP +   Y      T+    +VMEYC GGDL ++  +  +  ++  E        ++ LA
Sbjct: 64  HPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLA 123

Query: 446 LEYLH-----MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           L+  H        V++RDLKP NV +    ++ L DF L+
Sbjct: 124 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA 163

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 78.8 bits (195), Expect = 3e-16
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
           +     + + +FVGT  Y++PE +    +    D W+ G  L+EL     PF    ++  
Sbjct: 165 ILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF-SQKE 223

Query: 618 LFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           L   + +          S    ++I  +L  +  HR        EI ++P  
Sbjct: 224 LAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRP----SVEEILENPLI 271

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score =  137 bits (346), Expect = 1e-35
 Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 27/194 (13%)

Query: 306 KPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYL-----SELSSTRCYFA 360
              +   P  K     +     LG     +   LG G    VY         +  +  F 
Sbjct: 45  FEWQCKLPAIKPKTEFQ-----LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFV 99

Query: 361 MKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT 420
           +KV   A+     +        E L+          Y+       S LV E    G L  
Sbjct: 100 LKVQKPANP---WEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLN 156

Query: 421 L---RQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD--------- 468
                +  P K   +     +A  +L  +E +H   +++ D+KP+N ++ +         
Sbjct: 157 AINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDED 216

Query: 469 --DGHIMLSDFDLS 480
                + L D   S
Sbjct: 217 DLSAGLALIDLGQS 230

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 69.2 bits (169), Expect = 1e-12
 Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 15/115 (13%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +   T  +   E++  +     +D++     ++ +L+G      +         + ++L 
Sbjct: 244 AKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGLFRRLP 303

Query: 628 FPD------------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
             D                   S DL+R  L K  Q     K       ++    
Sbjct: 304 HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQHYTNKI---RALRNRLIV 355

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score =  139 bits (352), Expect = 2e-35
 Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 7/154 (4%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             ++  + LG G  G V L +   T    A+KV+ K  +  +        E ++L+ LDH
Sbjct: 26  DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDH 85

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P +  LY  FE   +  LV E   GG+L   +  R   K FSE  A     +VL  + Y+
Sbjct: 86  PNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISR---KRFSEVDAARIIRQVLSGITYM 142

Query: 450 HMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           H   +V+RDLKPEN+L+     D +I + DF LS
Sbjct: 143 HKNKIVHRDLKPENLLLESKSKDANIRIIDFGLS 176

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 7/108 (6%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
             +GT  Y+APE++ G  +    D W+ G+ L+ LL G  PF G+     L  V   +  
Sbjct: 187 DKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYT 245

Query: 628 FPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN 673
           F        S +++DLIR +L   P  R+     A +   H + +   
Sbjct: 246 FELPQWKKVSESAKDLIRKMLTYVPSMRI----SARDALDHEWIQTYT 289

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score =  135 bits (342), Expect = 2e-35
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 9/155 (5%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + L   LG G   +V+      T   FA+KV +  S    + +     E E+L+ L+H  
Sbjct: 11  WLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF--LRPVDVQMREFEVLKKLNHKN 68

Query: 393 LPTLYTHFE--TDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           +  L+   E  T R   L+ME+CP G L+T L +        E        +V+  + +L
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL 128

Query: 450 HMLGVVYRDLKPENVLVR----DDGHIMLSDFDLS 480
              G+V+R++KP N++            L+DF  +
Sbjct: 129 RENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA 163

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 69.0 bits (169), Expect = 9e-13
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 39/138 (28%)

Query: 567 MSFVGTHEYLAPEIIKG--------EGHGSAVDWWTFGIFLHELLYGKTPF--------- 609
           +S  GT EYL P++ +         + +G+ VD W+ G+  +    G  PF         
Sbjct: 173 VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN 232

Query: 610 ----------KGSGNRATLFNVVGQQLRFP-DSPATSYASR-------DLIRGLLVKEPQ 651
                     K SG  + +       + +  D P +   SR        ++  +L  + +
Sbjct: 233 KEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQE 292

Query: 652 HRLGVKRGATEIKQHPFF 669
              G      +       
Sbjct: 293 KCWGFD----QFFAETSD 306

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score =  136 bits (344), Expect = 3e-35
 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 322 RARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTE 381
            A D +L    + L + +G G    V       T   FA+K++D A   S   L+    +
Sbjct: 15  MADDDVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLK 74

Query: 382 RE--ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARF 437
           RE  I  +L HP +  L   + +D    +V E+  G DL    +++   G  +SE  A  
Sbjct: 75  REASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASH 134

Query: 438 YAAEVLLALEYLHMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           Y  ++L AL Y H   +++RD+KP  VL+    +   + L  F ++
Sbjct: 135 YMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVA 180

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 9/104 (8%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-QLR 627
            VGT  ++APE++K E +G  VD W  G+ L  LL G  PF G+  R  LF  + + + +
Sbjct: 193 RVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKER--LFEGIIKGKYK 250

Query: 628 FPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
                    S +++DL+R +L+ +P  R+       E   HP+ 
Sbjct: 251 MNPRQWSHISESAKDLVRRMLMLDPAERI----TVYEALNHPWL 290

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score =  134 bits (340), Expect = 4e-35
 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 9/177 (5%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           +   H+  +++LG G    V L E      ++A+K +       R++  R   E ++ +L
Sbjct: 26  IDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQR---EADMHRL 82

Query: 388 LDHPFLPTLYTHFETDRFS----CLVMEYCPGGDLHTL--RQRQPGKHFSEYAARFYAAE 441
            +HP +  L  +   +R +     L++ +   G L     R +  G   +E    +    
Sbjct: 83  FNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLG 142

Query: 442 VLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSD 498
           +   LE +H  G  +RDLKP N+L+ D+G  +L D     +  +     + +    D
Sbjct: 143 ICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQD 199

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 83.9 bits (208), Expect = 8e-18
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 567 MSFVGTHEYLAPEIIKGEGH---GSAVDWWTFGIFLHELLYGKTPFKGSGNRA-TLFNVV 622
            +   T  Y APE+   + H       D W+ G  L+ +++G+ P+     +  ++   V
Sbjct: 201 AAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAV 260

Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTP 682
             QL  P SP  S A   L+  ++  +P  R  +      +             ++   P
Sbjct: 261 QNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHI----PLLLSQLEA-------LQPPAP 309

Query: 683 PEVPRPM 689
            +    +
Sbjct: 310 GQHTTQI 316

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score =  133 bits (337), Expect = 4e-35
 Identities = 52/154 (33%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
            ++ L   +G G  G V ++    TR   A K + K  +    +  +   E EI++ LDH
Sbjct: 9   QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQ---EIEIMKSLDH 65

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P +  LY  FE +    LVME C GG+L   +  +   + F E  A     +VL A+ Y 
Sbjct: 66  PNIIRLYETFEDNTDIYLVMELCTGGELFERVVHK---RVFRESDAARIMKDVLSAVAYC 122

Query: 450 HMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           H L V +RDLKPEN L      D  + L DF L+
Sbjct: 123 HKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLA 156

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 75.7 bits (187), Expect = 3e-15
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           + VGT  Y++P++++G  +G   D W+ G+ ++ LL G  PF    +   +  +      
Sbjct: 167 TKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFT 225

Query: 628 FPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           FP+      S  +  LIR LL K P+ R+     + +  +H +FE 
Sbjct: 226 FPEKDWLNVSPQAESLIRRLLTKSPKQRI----TSLQALEHEWFEK 267

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score =  133 bits (338), Expect = 7e-35
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 10/154 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             F  ++ LG G    V+L +   T   FA+K + K+       L     E  +L+ + H
Sbjct: 9   KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLEN---EIAVLKKIKH 65

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
             + TL   +E+     LVM+   GG+L   + +R     ++E  A     +VL A++YL
Sbjct: 66  ENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERG---VYTEKDASLVIQQVLSAVKYL 122

Query: 450 HMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           H  G+V+RDLKPEN+L     ++  IM++DF LS
Sbjct: 123 HENGIVHRDLKPENLLYLTPEENSKIMITDFGLS 156

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
            +  GT  Y+APE++  + +  AVD W+ G+  + LL G  PF           +     
Sbjct: 165 STACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYY 224

Query: 627 RFPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
            F        S +++D I  LL K+P  R        +   HP+ +G
Sbjct: 225 EFESPFWDDISESAKDFICHLLEKDPNERY----TCEKALSHPWIDG 267

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score =  135 bits (342), Expect = 1e-34
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 9/155 (5%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + L   LG G   +V+      T   FA+KV +  S    + +     E E+L+ L+H  
Sbjct: 11  WLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF--LRPVDVQMREFEVLKKLNHKN 68

Query: 393 LPTLYTHFE--TDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           +  L+   E  T R   L+ME+CP G L+T L +        E        +V+  + +L
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL 128

Query: 450 HMLGVVYRDLKPENVLVR----DDGHIMLSDFDLS 480
              G+V+R++KP N++            L+DF  +
Sbjct: 129 RENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA 163

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 35/127 (27%)

Query: 567 MSFVGTHEYLAPEIIKG--------EGHGSAVDWWTFGIFLHELLYGKTPF--------- 609
           +S  GT EYL P++ +         + +G+ VD W+ G+  +    G  PF         
Sbjct: 173 VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN 232

Query: 610 ----------KGSGNRATLFNVVGQQLRFPD--------SPATSYASRDLIRGLLVKEPQ 651
                     K SG  + +       + +          S         ++  +L  + +
Sbjct: 233 KEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQE 292

Query: 652 HRLGVKR 658
              G  +
Sbjct: 293 KCWGFDQ 299

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score =  131 bits (333), Expect = 2e-34
 Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 7/155 (4%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             F   ++LG G  G V+L E  S+     +K ++K       +      E E+L+ LDH
Sbjct: 22  DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIE--AEIEVLKSLDH 79

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
           P +  ++  FE      +VME C GG+L    +  +  GK  SE        +++ AL Y
Sbjct: 80  PNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAY 139

Query: 449 LHMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
            H   VV++DLKPEN+L +       I + DF L+
Sbjct: 140 FHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLA 174

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           +  GT  Y+APE+ K +      D W+ G+ ++ LL G  PF G+           ++  
Sbjct: 185 NAAGTALYMAPEVFKRD-VTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPN 243

Query: 628 FPDSPAT-SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           +       +  + DL++ +L K+P+ R      A ++  H +F
Sbjct: 244 YAVECRPLTPQAVDLLKQMLTKDPERRP----SAAQVLHHEWF 282

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score =  131 bits (333), Expect = 2e-34
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 8/154 (5%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             + ++  LG G  G V   +   T+  +A+KV++KAS    K  +    E E+L+ LDH
Sbjct: 22  ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASA-KNKDTSTILREVELLKKLDH 80

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P +  L+   E      +V E   GG+L   + +R   K FSE+ A     +V   + Y+
Sbjct: 81  PNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYM 137

Query: 450 HMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           H   +V+RDLKPEN+L+     D  I + DF LS
Sbjct: 138 HKHNIVHRDLKPENILLESKEKDCDIKIIDFGLS 171

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
             +GT  Y+APE+++G  +    D W+ G+ L+ LL G  PF G      L  V   +  
Sbjct: 182 DRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYA 240

Query: 628 FPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           F        S  ++DLIR +L   P  R+     AT+  +HP+ 
Sbjct: 241 FDLPQWRTISDDAKDLIRKMLTFHPSLRI----TATQCLEHPWI 280

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score =  136 bits (344), Expect = 2e-34
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 8/154 (5%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             + ++  LG G  G V   +   T+  +A+KV++KAS    K  +    E E+L+ LDH
Sbjct: 22  ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASA-KNKDTSTILREVELLKKLDH 80

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P +  L+   E      +V E   GG+L   + +R   K FSE+ A     +V   + Y+
Sbjct: 81  PNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYM 137

Query: 450 HMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           H   +V+RDLKPEN+L+     D  I + DF LS
Sbjct: 138 HKHNIVHRDLKPENILLESKEKDCDIKIIDFGLS 171

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
             +GT  Y+APE+++G  +    D W+ G+ L+ LL G  PF G      L  V   +  
Sbjct: 182 DRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYA 240

Query: 628 FPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN 673
           F        S  ++DLIR +L   P  R+     AT+  +HP+ +  +
Sbjct: 241 FDLPQWRTISDDAKDLIRKMLTFHPSLRI----TATQCLEHPWIQKYS 284

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score =  133 bits (337), Expect = 3e-34
 Identities = 54/228 (23%), Positives = 88/228 (38%), Gaps = 18/228 (7%)

Query: 260 ERNCESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAIL 319
             N E  +  +R    + ++++   A            +      +   +   P W A  
Sbjct: 31  NLNREQRRAFIRSLRDDPSQSANLLAEAKKLNDAQPKGTENLYFQSMGPEDELPDWAAAK 90

Query: 320 AIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLT--- 376
                        +     +G G    V      +T   FA+K+M+  +     +     
Sbjct: 91  EFYQ--------KYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEV 142

Query: 377 RAQTEREI---LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSE 432
           R  T RE     Q+  HP + TL   +E+  F  LV +    G+L   L ++      SE
Sbjct: 143 REATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEK---VALSE 199

Query: 433 YAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              R     +L A+ +LH   +V+RDLKPEN+L+ D+  I LSDF  S
Sbjct: 200 KETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFS 247

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 39/111 (35%), Positives = 52/111 (46%), Gaps = 14/111 (12%)

Query: 569 FVGTHEYLAPEIIKG------EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
             GT  YLAPEI+K        G+G  VD W  G+ L  LL G  PF     +  +  ++
Sbjct: 259 LCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHR-RQILMLRMI 317

Query: 623 GQ-QLRFPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
            + Q +F        S   +DLI  LL  +P+ RL     A +  QHPFFE
Sbjct: 318 MEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARL----TAEQALQHPFFE 364

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score =  131 bits (332), Expect = 3e-34
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 11/158 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL----ASRKKLTRAQTERE--I 384
            ++   + LG G    V       T   +A+K++D        A   +  R  T +E  I
Sbjct: 17  ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 76

Query: 385 LQLLD-HPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEV 442
           L+ +  HP +  L   +ET+ F  LV +    G+L   L ++      SE   R     +
Sbjct: 77  LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIMRAL 133

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           L  +  LH L +V+RDLKPEN+L+ DD +I L+DF  S
Sbjct: 134 LEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFS 171

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 12/118 (10%)

Query: 569 FVGTHEYLAPEIIKG------EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
             GT  YLAPEII+        G+G  VD W+ G+ ++ LL G  PF        L  ++
Sbjct: 183 VCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIM 242

Query: 623 GQQLRFPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIR 678
               +F        S   +DL+   LV +PQ R      A E   HPFF+      +R
Sbjct: 243 SGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRY----TAEEALAHPFFQQYVVEEVR 296

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score =  135 bits (343), Expect = 4e-34
 Identities = 56/154 (36%), Positives = 79/154 (51%), Gaps = 8/154 (5%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             ++ +K+LG G  G V L     T    A+K++ K S+ S    ++   E  +L+LLDH
Sbjct: 37  EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSV-STSSNSKLLEEVAVLKLLDH 95

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P +  LY  FE  R   LVME   GG+L   +  R     F+E  A     +VL  + YL
Sbjct: 96  PNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHR---MKFNEVDAAVIIKQVLSGVTYL 152

Query: 450 HMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           H   +V+RDLKPEN+L+     D  I + DF LS
Sbjct: 153 HKHNIVHRDLKPENLLLESKEKDALIKIVDFGLS 186

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
             +GT  Y+APE+++ + +    D W+ G+ L  LL G  PF G  ++  L  V   +  
Sbjct: 197 ERLGTAYYIAPEVLRKK-YDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYT 255

Query: 628 FPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           F        S  ++DLI+ +L  + Q R+     A +  +HP+ + 
Sbjct: 256 FDSPEWKNVSEGAKDLIKQMLQFDSQRRI----SAQQALEHPWIKE 297

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score =  130 bits (330), Expect = 5e-34
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 8/154 (5%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
            ++ + + LG G    V      +T   FA K+++   L S +   + + E  I + L H
Sbjct: 6   DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL-SARDFQKLEREARICRKLQH 64

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P +  L+   + + F  LV +   GG+L   +  R   + +SE  A     ++L ++ Y 
Sbjct: 65  PNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYC 121

Query: 450 HMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           H  G+V+R+LKPEN+L+        + L+DF L+
Sbjct: 122 HSNGIVHRNLKPENLLLASKAKGAAVKLADFGLA 155

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 77.2 bits (191), Expect = 1e-15
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT  YL+PE++K + +   VD W  G+ L+ LL G  PF           +      +
Sbjct: 167 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 226

Query: 629 PDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           P       +  ++ LI  +L   P+ R+     A +  + P+   
Sbjct: 227 PSPEWDTVTPEAKSLIDSMLTVNPKKRI----TADQALKVPWICN 267

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score =  130 bits (330), Expect = 5e-34
 Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 23/167 (13%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
              F+ ++ +G G  G V+ ++       + +K +   +  + +       E + L  LD
Sbjct: 10  GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAER-------EVKALAKLD 62

Query: 390 HPFLPTLYTHFETDRFS----------------CLVMEYCPGGDLHTLRQRQPGKHFSEY 433
           H  +      ++   +                  + ME+C  G L    +++ G+   + 
Sbjct: 63  HVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKV 122

Query: 434 AARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            A     ++   ++Y+H   ++ RDLKP N+ + D   + + DF L 
Sbjct: 123 LALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLV 169

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 77.3 bits (191), Expect = 8e-16
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 12/104 (11%)

Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQ 625
               GT  Y++PE I  + +G  VD +  G+ L ELL+   T F      +  F  + + 
Sbjct: 179 TRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAF----ETSKFFTDL-RD 233

Query: 626 LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
               D        + L++ LL K+P+ R       +EI +    
Sbjct: 234 GIISDI--FDKKEKTLLQKLLSKKPEDRP----NTSEILRTLTV 271

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score =  130 bits (329), Expect = 2e-33
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 13/158 (8%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTER-----EILQ 386
            + + K LG G  G V L+    T    A+K++ K   A                 EIL+
Sbjct: 11  EYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILK 70

Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLA 445
            L+HP +  +   F+ + +  +V+E   GG+L   +   +      E   + Y  ++LLA
Sbjct: 71  KLNHPCIIKIKNFFDAEDY-YIVLELMEGGELFDKVVGNK---RLKEATCKLYFYQMLLA 126

Query: 446 LEYLHMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           ++YLH  G+++RDLKPENVL+    +D  I ++DF  S
Sbjct: 127 VQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHS 164

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 569 FVGTHEYLAPEIIKG---EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ- 624
             GT  YLAPE++      G+  AVD W+ G+ L   L G  PF     + +L + +   
Sbjct: 176 LCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSG 235

Query: 625 QLRFPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           +  F        S  + DL++ LLV +P+ R        E  +HP+ + 
Sbjct: 236 KYNFIPEVWAEVSEKALDLVKKLLVVDPKARF----TTEEALRHPWLQD 280

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score =  131 bits (332), Expect = 2e-33
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 6/154 (3%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
            ++ +L+ LG G  G V+     +T   F  K ++      +  +     E  I+  L H
Sbjct: 51  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKN---EISIMNQLHH 107

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P L  L+  FE      L++E+  GG+L   R        SE     Y  +    L+++H
Sbjct: 108 PKLINLHDAFEDKYEMVLILEFLSGGELFD-RIAAEDYKMSEAEVINYMRQACEGLKHMH 166

Query: 451 MLGVVYRDLKPENVLV--RDDGHIMLSDFDLSLR 482
              +V+ D+KPEN++   +    + + DF L+ +
Sbjct: 167 EHSIVHLDIKPENIMCETKKASSVKIIDFGLATK 200

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
             T E+ APEI+  E  G   D W  G+  + LL G +PF G  +  TL NV      F 
Sbjct: 211 TATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFD 270

Query: 630 DS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           +    + S  ++D I+ LL KEP+ RL       +  +HP+ +G
Sbjct: 271 EDAFSSVSPEAKDFIKNLLQKEPRKRL----TVHDALEHPWLKG 310

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score =  129 bits (326), Expect = 2e-33
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 11/158 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL-ASRKKLTRAQTERE--ILQL 387
            H+ + + LG G    V       T   +A K + K  L +SR+ ++R + ERE  IL+ 
Sbjct: 5   DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILRE 64

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLAL 446
           + HP + TL+  FE      L++E   GG+L   L ++   +  +E  A  +  ++L  +
Sbjct: 65  IRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEK---ESLTEDEATQFLKQILDGV 121

Query: 447 EYLHMLGVVYRDLKPENVLV----RDDGHIMLSDFDLS 480
            YLH   + + DLKPEN+++      +  I L DF ++
Sbjct: 122 HYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIA 159

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 79.5 bits (197), Expect = 2e-16
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
             GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL N+      F
Sbjct: 171 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDF 230

Query: 629 PDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
            +     TS  ++D IR LLVK+P+ R+       +  +H + + 
Sbjct: 231 DEEYFSNTSELAKDFIRRLLVKDPKRRM----TIAQSLEHSWIKA 271

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score =  129 bits (327), Expect = 2e-33
 Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            + +LK++G G    V+   L+  +  +A+K ++       + L   + E   L  L   
Sbjct: 29  IYSILKQIGSGGSSKVFQV-LNEKKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQH 86

Query: 392 FLP--TLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEY 448
                 LY +  TD++  +VME     DL++ L+++   K    +  + Y   +L A+  
Sbjct: 87  SDKIIRLYDYEITDQYIYMVMECG-NIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHT 142

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +H  G+V+ DLKP N L+  DG + L DF ++
Sbjct: 143 IHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA 173

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 16/114 (14%)

Query: 568 SFVGTHEYLAPEIIKGEG-----------HGSAVDWWTFGIFLHELLYGKTPFKGSGNR- 615
           S VGT  Y+ PE IK                   D W+ G  L+ + YGKTPF+   N+ 
Sbjct: 187 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 246

Query: 616 ATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           + L  ++                +D+++  L ++P+ R+ +     E+  HP+ 
Sbjct: 247 SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIP----ELLAHPYV 296

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score =  130 bits (328), Expect = 2e-33
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 11/154 (7%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE--ILQLL 388
             + + + LG G+ G V+    +S++  +  K +        K   +   ++E  IL + 
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKV------KGTDQVLVKKEISILNIA 58

Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
            H  +  L+  FE+     ++ E+  G D+   R        +E     Y  +V  AL++
Sbjct: 59  RHRNILHLHESFESMEELVMIFEFISGLDIFE-RINTSAFELNEREIVSYVHQVCEALQF 117

Query: 449 LHMLGVVYRDLKPENVLV--RDDGHIMLSDFDLS 480
           LH   + + D++PEN++   R    I + +F  +
Sbjct: 118 LHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQA 151

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 78.0 bits (193), Expect = 8e-16
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
               EY APE+ + +   +A D W+ G  ++ LL G  PF    N+  + N++  +  F 
Sbjct: 164 FTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFD 223

Query: 630 DSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHP 667
           +      S  + D +  LLVKE + R+     A+E  QHP
Sbjct: 224 EEAFKEISIEAMDFVDRLLVKERKSRM----TASEALQHP 259

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score =  130 bits (328), Expect = 2e-33
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 11/161 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL-ASRKKLTRAQTERE--ILQL 387
             + + + LG G    V      ST   +A K + K    ASR+ ++R + ERE  IL+ 
Sbjct: 12  DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQ 71

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLAL 446
           + H  + TL+  +E      L++E   GG+L   L Q++     SE  A  +  ++L  +
Sbjct: 72  VLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKE---SLSEEEATSFIKQILDGV 128

Query: 447 EYLHMLGVVYRDLKPENVLVR----DDGHIMLSDFDLSLRC 483
            YLH   + + DLKPEN+++        HI L DF L+   
Sbjct: 129 NYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEI 169

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
             GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL N+      F
Sbjct: 178 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDF 237

Query: 629 PDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
            +     TS  ++D IR LLVKE + RL       E  +HP+   
Sbjct: 238 DEEFFSHTSELAKDFIRKLLVKETRKRL----TIQEALRHPWITP 278

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score =  130 bits (328), Expect = 5e-33
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 8/154 (5%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
            ++ + + LG G    V      +T   FA K+++   L S +   + + E  I + L H
Sbjct: 29  DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL-SARDFQKLEREARICRKLQH 87

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P +  L+   + + F  LV +   GG+L   +  R   + +SE  A     ++L ++ Y 
Sbjct: 88  PNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYC 144

Query: 450 HMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           H  G+V+R+LKPEN+L+        + L+DF L+
Sbjct: 145 HSNGIVHRNLKPENLLLASKAKGAAVKLADFGLA 178

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT  YL+PE++K + +   VD W  G+ L+ LL G  PF           +      +
Sbjct: 190 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 249

Query: 629 PDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           P       +  ++ LI  +L   P+ R+     A +  + P+   
Sbjct: 250 PSPEWDTVTPEAKSLIDSMLTVNPKKRI----TADQALKVPWICN 290

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score =  129 bits (327), Expect = 5e-33
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL-ASRKKLTRAQTERE--ILQL 387
             + + + LG G    V      ST   +A K + K    ASR+ + R + ERE  IL+ 
Sbjct: 12  DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQ 71

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLAL 446
           + HP + TL+  +E      L++E   GG+L   L Q++     SE  A  +  ++L  +
Sbjct: 72  VLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKE---SLSEEEATSFIKQILDGV 128

Query: 447 EYLHMLGVVYRDLKPENVLVR----DDGHIMLSDFDLS 480
            YLH   + + DLKPEN+++        HI L DF L+
Sbjct: 129 NYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
             GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL N+      F
Sbjct: 178 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDF 237

Query: 629 PDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
            +     TS  ++D IR LLVKE + RL       E  +HP+   
Sbjct: 238 DEEFFSQTSELAKDFIRKLLVKETRKRL----TIQEALRHPWITP 278

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score =  130 bits (330), Expect = 7e-33
 Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 13/158 (8%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR-----KKLTRAQTEREILQ 386
            + + K LG G  G V L+    T    A++++ K   A             +TE EIL+
Sbjct: 136 EYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILK 195

Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLA 445
            L+HP +  +   F+ + +  +V+E   GG+L   +      K   E   + Y  ++LLA
Sbjct: 196 KLNHPCIIKIKNFFDAEDY-YIVLELMEGGELFDKVVGN---KRLKEATCKLYFYQMLLA 251

Query: 446 LEYLHMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           ++YLH  G+++RDLKPENVL+    +D  I ++DF  S
Sbjct: 252 VQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHS 289

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 73.6 bits (181), Expect = 6e-14
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 569 FVGTHEYLAPEIIKG---EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQ 624
             GT  YLAPE++      G+  AVD W+ G+ L   L G  PF     + +L + +   
Sbjct: 301 LCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSG 360

Query: 625 QLRFPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           +  F        S  + DL++ LLV +P+ R        E  +HP+ + 
Sbjct: 361 KYNFIPEVWAEVSEKALDLVKKLLVVDPKARF----TTEEALRHPWLQD 405

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score =  128 bits (323), Expect = 9e-33
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL-ASRKKLTRAQTERE--ILQL 387
            ++   + LG G    V      ST   +A K + K    +SR+ ++R   ERE  IL+ 
Sbjct: 11  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 70

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLAL 446
           + HP + TL+  +E      L++E   GG+L   L ++   +  +E  A  +  ++L  +
Sbjct: 71  IQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK---ESLTEEEATEFLKQILNGV 127

Query: 447 EYLHMLGVVYRDLKPENVLVR----DDGHIMLSDFDLS 480
            YLH L + + DLKPEN+++         I + DF L+
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLA 165

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
             GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV      F
Sbjct: 177 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEF 236

Query: 629 PDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
            D     TS  ++D IR LLVK+P+ R+       +  QHP+ + 
Sbjct: 237 EDEYFSNTSALAKDFIRRLLVKDPKKRM----TIQDSLQHPWIKP 277

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score =  127 bits (321), Expect = 1e-32
 Identities = 33/164 (20%), Positives = 68/164 (41%), Gaps = 15/164 (9%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           ++ F  ++ LG G  G V+ ++     C +A+K +   +    ++  +   E + L  L+
Sbjct: 4   LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELARE--KVMREVKALAKLE 61

Query: 390 HPFLPTLYTHFETDRFS------------CLVMEYCPGGDLHT-LRQRQPGKHFSEYAAR 436
           HP +   +  +     +             + M+ C   +L   +  R   +        
Sbjct: 62  HPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCL 121

Query: 437 FYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
               ++  A+E+LH  G+++RDLKP N+    D  + + DF L 
Sbjct: 122 HIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLV 165

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA 616
           L   P  AR    VGT  Y++PE I G  +   VD ++ G+ L ELLY   PF     R 
Sbjct: 178 LTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERV 234

Query: 617 TLFNVVGQQLRFPDSPAT-SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN 673
                V + L+FP            +++ +L   P  R      A  I ++  FE ++
Sbjct: 235 RTLTDV-RNLKFPPLFTQKYPCEYVMVQDMLSPSPMERP----EAINIIENAVFEDLD 287

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score =  129 bits (325), Expect = 1e-32
 Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 264 ESTKGSVRGDSLESAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRA 323
           +S K S   DS  S          ++ L++     +   SA        P       + A
Sbjct: 22  QSMKNSGDQDS-RSGHNEAKEVWSNADLTERMPVKSKRTSALAVDIPAPPAPFDHRIVTA 80

Query: 324 RDGILGMSHFRLLKR--LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTE 381
           + G +  S + + K   LG G  G V+  E ++T    A K++    +  ++++     E
Sbjct: 81  KQGAVN-SFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKN---E 136

Query: 382 REILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAE 441
             ++  LDH  L  LY  FE+     LVMEY  GG+L   R      + +E     +  +
Sbjct: 137 ISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFD-RIIDESYNLTELDTILFMKQ 195

Query: 442 VLLALEYLHMLGVVYRDLKPENVLV--RDDGHIMLSDFDLSLRC 483
           +   + ++H + +++ DLKPEN+L   RD   I + DF L+ R 
Sbjct: 196 ICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRY 239

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 78.6 bits (194), Expect = 9e-16
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 6/100 (6%)

Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
            GT E+LAPE++  +      D W+ G+  + LL G +PF G  +  TL N++  +    
Sbjct: 249 FGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLE 308

Query: 630 DS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHP 667
           D      S  +++ I  LL+KE   R+     A+E  +HP
Sbjct: 309 DEEFQDISEEAKEFISKLLIKEKSWRI----SASEALKHP 344

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score =  128 bits (323), Expect = 1e-32
 Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            + +LK++G G    V+   L+  +  +A+K ++       + L   + E   L  L   
Sbjct: 10  IYSILKQIGSGGSSKVFQV-LNEKKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQH 67

Query: 392 FLP--TLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEY 448
                 LY +  TD++  +VME     DL++ L+++   K    +  + Y   +L A+  
Sbjct: 68  SDKIIRLYDYEITDQYIYMVMECG-NIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHT 123

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +H  G+V+ DLKP N L+  DG + L DF ++
Sbjct: 124 IHQHGIVHSDLKPANFLI-VDGMLKLIDFGIA 154

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 16/114 (14%)

Query: 568 SFVGTHEYLAPEIIKGEG-----------HGSAVDWWTFGIFLHELLYGKTPFKGSGNR- 615
           S VGT  Y+ PE IK                   D W+ G  L+ + YGKTPF+   N+ 
Sbjct: 168 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 227

Query: 616 ATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           + L  ++                +D+++  L ++P+ R+ +     E+  HP+ 
Sbjct: 228 SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIP----ELLAHPYV 277

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score =  131 bits (331), Expect = 1e-32
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 17/164 (10%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRA----------QT 380
             +  +++LG G  G V L +  +     A+KV+ K+     +                 
Sbjct: 36  ESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYN 95

Query: 381 EREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYA 439
           E  +L+ LDHP +  L+  FE  ++  LV E+  GG+L   +  R     F E  A    
Sbjct: 96  EISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINR---HKFDECDAANIM 152

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
            ++L  + YLH   +V+RD+KPEN+L+       +I + DF LS
Sbjct: 153 KQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLS 196

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 77.0 bits (190), Expect = 7e-15
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
             +GT  Y+APE++K + +    D W+ G+ ++ LL G  PF G  ++  +  V   +  
Sbjct: 207 DRLGTAYYIAPEVLKKK-YNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYY 265

Query: 628 FPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           F  +     S  +++LI+ +L  +   R      A E     + + 
Sbjct: 266 FDFNDWKNISDEAKELIKLMLTYDYNKRC----TAEEALNSRWIKK 307

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score =  129 bits (327), Expect = 2e-32
 Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             ++L + LG G    V           +A  +++   L S +   + + E  I +LL H
Sbjct: 11  EEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL-SARDHQKLEREARICRLLKH 69

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P +  L+     +    L+ +   GG+L   +  R   +++SE  A     ++L A+ + 
Sbjct: 70  PNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAR---EYYSEADASHCIQQILEAVLHC 126

Query: 450 HMLGVVYRDLKPENVLVR---DDGHIMLSDFDLSLRCAVSPTLIKT 492
           H +GVV+R+LKPEN+L+        + L+DF L++           
Sbjct: 127 HQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFG 172

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
           F GT  YL+PE+++ + +G  VD W  G+ L+ LL G  PF           +      F
Sbjct: 173 FAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDF 232

Query: 629 PDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           P       +  ++DLI  +L   P  R+     A E  +HP+   
Sbjct: 233 PSPEWDTVTPEAKDLINKMLTINPSKRI----TAAEALKHPWISH 273

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score =  128 bits (324), Expect = 2e-32
 Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 11/204 (5%)

Query: 280 TSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRL 339
            S       SG+ + +         + P  G D   KA  +      + G   + +LK++
Sbjct: 6   HSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKASSSANECISVKG-RIYSILKQI 64

Query: 340 GCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLP--TLY 397
           G G    V+   L+  +  +A+K ++       + L   + E   L  L         LY
Sbjct: 65  GSGGSSKVFQV-LNEKKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLY 122

Query: 398 THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVY 456
            +  TD++  +VME     DL++ L+++   K    +  + Y   +L A+  +H  G+V+
Sbjct: 123 DYEITDQYIYMVMECG-NIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIHQHGIVH 178

Query: 457 RDLKPENVLVRDDGHIMLSDFDLS 480
            DLKP N L+  DG + L DF ++
Sbjct: 179 SDLKPANFLI-VDGMLKLIDFGIA 201

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 85.3 bits (211), Expect = 8e-18
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 16/114 (14%)

Query: 568 SFVGTHEYLAPEIIKGEG-----------HGSAVDWWTFGIFLHELLYGKTPFKGSGNR- 615
           S VG   Y+ PE IK                   D W+ G  L+ + YGKTPF+   N+ 
Sbjct: 215 SQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI 274

Query: 616 ATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           + L  ++                +D+++  L ++P+ R+ +     E+  HP+ 
Sbjct: 275 SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIP----ELLAHPYV 324

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score =  127 bits (320), Expect = 3e-32
 Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 42/192 (21%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL--ASRKKLTRAQTEREILQLL 388
             + L   +G G  G V ++  + TR   A+K+M+K  +   + K + R +TE  +++ L
Sbjct: 26  KKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKL 85

Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDL------------------------------ 418
            HP +  LY  +E +++ CLVME C GG L                              
Sbjct: 86  HHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPEC 145

Query: 419 --------HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV--RD 468
                       +        E        ++  AL YLH  G+ +RD+KPEN L     
Sbjct: 146 NEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNK 205

Query: 469 DGHIMLSDFDLS 480
              I L DF LS
Sbjct: 206 SFEIKLVDFGLS 217

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 83.3 bits (206), Expect = 2e-17
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 569 FVGTHEYLAPEIIKGEGH--GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
             GT  ++APE++       G   D W+ G+ LH LL G  PF G  +  T+  V+ ++L
Sbjct: 234 KAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKL 293

Query: 627 RFPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            F +      S  +RDL+  LL +    R      A    QHP+ 
Sbjct: 294 CFENPNYNVLSPLARDLLSNLLNRNVDERF----DAMRALQHPWI 334

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score =  130 bits (328), Expect = 7e-32
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
            H+ + + LG G  G V+     +T   FA K +     + ++ + +   E + + +L H
Sbjct: 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRK---EIQTMSVLRH 213

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P L  L+  FE D    ++ E+  GG+L   +        SE  A  Y  +V   L ++H
Sbjct: 214 PTLVNLHDAFEDDNEMVMIYEFMSGGELFE-KVADEHNKMSEDEAVEYMRQVCKGLCHMH 272

Query: 451 MLGVVYRDLKPENVLV--RDDGHIMLSDFDLSLRC 483
               V+ DLKPEN++   +    + L DF L+   
Sbjct: 273 ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL 307

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 78.3 bits (193), Expect = 3e-15
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
            GT E+ APE+ +G+  G   D W+ G+  + LL G +PF G  +  TL NV        
Sbjct: 317 TGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMD 376

Query: 630 DS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHP 667
           DS     S   +D IR LL+ +P  R+       +  +HP
Sbjct: 377 DSAFSGISEDGKDFIRKLLLADPNTRM----TIHQALEHP 412

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score =  124 bits (314), Expect = 1e-31
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 14/149 (9%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPT 395
           K LG G            +   FA+K++ K      +     Q E   L+L + HP +  
Sbjct: 17  KPLGEGSFSICRKCVHKKSNQAFAVKIISK------RMEANTQKEITALKLCEGHPNIVK 70

Query: 396 LYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGV 454
           L+  F     + LVME   GG+L   ++++   KHFSE  A +   +++ A+ ++H +GV
Sbjct: 71  LHEVFHDQLHTFLVMELLNGGELFERIKKK---KHFSETEASYIMRKLVSAVSHMHDVGV 127

Query: 455 VYRDLKPENVLVRD---DGHIMLSDFDLS 480
           V+RDLKPEN+L  D   +  I + DF  +
Sbjct: 128 VHRDLKPENLLFTDENDNLEIKIIDFGFA 156

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 13/114 (11%)

Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT------LFN 620
            +   T  Y APE++   G+  + D W+ G+ L+ +L G+ PF+      T      +  
Sbjct: 167 KTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMK 226

Query: 621 VVGQ-QLRFPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
            + +    F        S  ++DLI+GLL  +P  RL      + ++ + + + 
Sbjct: 227 KIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRL----KMSGLRYNEWLQD 276

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score =  123 bits (311), Expect = 1e-31
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 324 RDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE 383
            DG + + H+ L   LG G  G V + E   T    A+K++++  + S   + + + E +
Sbjct: 4   HDGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQ 63

Query: 384 ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLH---TLRQRQPGKHFSEYAARFYAA 440
            L+L  HP +  LY    T     +VMEY  GG+L        R       E  AR    
Sbjct: 64  NLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGR-----VEEMEARRLFQ 118

Query: 441 EVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++L A++Y H   VV+RDLKPENVL+    +  ++DF LS
Sbjct: 119 QILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS 158

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 73.0 bits (180), Expect = 3e-14
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 9/101 (8%)

Query: 571 GTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRF 628
           G+  Y APE+I G    G  VD W+ G+ L+ LL G  PF    +  TLF  + G     
Sbjct: 172 GSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE-HVPTLFKKIRGGVFYI 230

Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           P+    + +   L+  +L  +P  R  +K    +I++H +F
Sbjct: 231 PEY--LNRSVATLLMHMLQVDPLKRATIK----DIREHEWF 265

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score =  123 bits (312), Expect = 2e-31
 Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           +  + +   LG G  G V     S T C  A+K++ K  L  R     A  ++EI  L+ 
Sbjct: 4   IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKL-RRIPNGEANVKKEIQLLRR 62

Query: 388 LDHPFLPTLYT--HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLA 445
           L H  +  L    + E  +   +VMEYC  G +  +    P K F    A  Y  +++  
Sbjct: 63  LRHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDG 121

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS--LRCAVSPTLIKTS 493
           LEYLH  G+V++D+KP N+L+   G + +S   ++  L    +    +TS
Sbjct: 122 LEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTS 171

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 13/135 (9%)

Query: 571 GTHEYLAPEIIKGEG--HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVGQQLR 627
           G+  +  PEI  G     G  VD W+ G+ L+ +  G  PF+G  N   LF N+      
Sbjct: 173 GSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD-NIYKLFENIGKGSYA 231

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPR 687
            P          DL++G+L  EP  R  ++    +I+QH +F            P  +P 
Sbjct: 232 IPGD--CGPPLSDLLKGMLEYEPAKRFSIR----QIRQHSWF---RKKHPPAEAPVPIPP 282

Query: 688 PMEAELPGKFGAVDP 702
             + +   +   V P
Sbjct: 283 SPDTKDRWRSMTVVP 297

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score =  123 bits (311), Expect = 3e-31
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 28/187 (14%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTR-------------- 377
            + L   +G G  G V L+   +   Y+AMKV+ K  L  +    R              
Sbjct: 14  QYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGC 73

Query: 378 -------AQTEREI--LQLLDHPFLPTLYTHFE--TDRFSCLVMEYCPGGDLHTLRQRQP 426
                   Q  +EI  L+ LDHP +  L    +   +    +V E    G +  +   +P
Sbjct: 74  IQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKP 133

Query: 427 GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS 486
               SE  ARFY  +++  +EYLH   +++RD+KP N+LV +DGHI ++DF +S     S
Sbjct: 134 ---LSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGS 190

Query: 487 PTLIKTS 493
             L+  +
Sbjct: 191 DALLSNT 197

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 87.7 bits (218), Expect = 4e-19
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 9/105 (8%)

Query: 569 FVGTHEYLAPEIIKGEG---HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQ 624
            VGT  ++APE +        G A+D W  G+ L+  ++G+ PF        L + +  Q
Sbjct: 197 TVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE-RIMCLHSKIKSQ 255

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            L FPD P  +   +DLI  +L K P+ R+ V     EIK HP+ 
Sbjct: 256 ALEFPDQPDIAEDLKDLITRMLDKNPESRIVVP----EIKLHPWV 296

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score =  122 bits (308), Expect = 4e-31
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           +  + L++ LG G  G V L+    T    A+K++D               ++EI   ++
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD----CPENIKKEICINKM 61

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           L+H  +   Y H        L +EYC GG+L   R         E  A+ +  +++  + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIG-MPEPDAQRFFHQLMAGVV 119

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS--LRCAVSPTLIKTS 493
           YLH +G+ +RD+KPEN+L+ +  ++ +SDF L+   R      L+   
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKM 167

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 75.7 bits (187), Expect = 3e-15
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 568 SFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVGQQ 625
              GT  Y+APE++K    H   VD W+ GI L  +L G+ P+    +      +   ++
Sbjct: 166 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKK 225

Query: 626 LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
                      A   L+  +LV+ P  R+ +     +IK+  ++
Sbjct: 226 TYLNPWKKIDSAPLALLHKILVENPSARITIP----DIKKDRWY 265

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score =  123 bits (310), Expect = 5e-31
 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPT 395
             LG G    V       T   +A+K+++K     R ++ R   E E+L Q   H  +  
Sbjct: 19  DVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFR---EVEMLYQCQGHRNVLE 75

Query: 396 LYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGV 454
           L   FE +    LV E   GG +   + +R   +HF+E  A     +V  AL++LH  G+
Sbjct: 76  LIEFFEEEDRFYLVFEKMRGGSILSHIHKR---RHFNELEASVVVQDVASALDFLHNKGI 132

Query: 455 VYRDLKPENVLVRDDGH---IMLSDFDLS 480
            +RDLKPEN+L         + + DFDL 
Sbjct: 133 AHRDLKPENILCEHPNQVSPVKICDFDLG 161

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 27/147 (18%)

Query: 548 GLPSSTLPELVAEPTAARSMS-FVGTHEYLAPEIIKG-----EGHGSAVDWWTFGIFLHE 601
            L S         P +   +    G+ EY+APE+++        +    D W+ G+ L+ 
Sbjct: 159 DLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYI 218

Query: 602 LLYGKTPFKGSGNRAT--------------LFNVVGQ-QLRFPDSP--ATSYASRDLIRG 644
           LL G  PF G                    LF  + + +  FPD      S A++DLI  
Sbjct: 219 LLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISK 278

Query: 645 LLVKEPQHRLGVKRGATEIKQHPFFEG 671
           LLV++ + RL     A ++ QHP+ +G
Sbjct: 279 LLVRDAKQRL----SAAQVLQHPWVQG 301

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score =  123 bits (311), Expect = 6e-31
 Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             F +   LG G    VY  +   T+  +A+KV+ K            +TE  +L  L H
Sbjct: 53  DFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKK-----TVDKKIVRTEIGVLLRLSH 107

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P +  L   FET     LV+E   GG+L   + ++    ++SE  A     ++L A+ YL
Sbjct: 108 PNIIKLKEIFETPTEISLVLELVTGGELFDRIVEK---GYYSERDAADAVKQILEAVAYL 164

Query: 450 HMLGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           H  G+V+RDLKPEN+L      D  + ++DF LS
Sbjct: 165 HENGIVHRDLKPENLLYATPAPDAPLKIADFGLS 198

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 78.9 bits (195), Expect = 5e-16
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-QL 626
           +  GT  Y APEI++G  +G  VD W+ GI  + LL G  PF        +F  +   + 
Sbjct: 209 TVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEY 268

Query: 627 RFPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN 673
            F        S  ++DL+R L+V +P+ RL       +  QHP+  G  
Sbjct: 269 YFISPWWDEVSLNAKDLVRKLIVLDPKKRL----TTFQALQHPWVTGKA 313

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score =  122 bits (309), Expect = 7e-31
 Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 5/152 (3%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           + ++RLLK +G G+   V L+    T    A+K++DK  L +   L +   E  I+++L+
Sbjct: 14  IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQL-NPTSLQKLFREVRIMKILN 72

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEY 448
           HP +  L+   ET++   L+MEY  GG++   L          E  AR    +++ A++Y
Sbjct: 73  HPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHG---RMKEKEARSKFRQIVSAVQY 129

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            H   +V+RDLK EN+L+  D +I ++DF  S
Sbjct: 130 CHQKRIVHRDLKAENLLLDADMNIKIADFGFS 161

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 569 FVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           F G   Y APE+ +G+   G  VD W+ G+ L+ L+ G  PF G   +     V+  + R
Sbjct: 173 FCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYR 232

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF-EGVNWALIRCSTPPEVP 686
            P     S    +L++  LV  P  R  ++    +I +  +   G     ++    PE+ 
Sbjct: 233 IPFYM--STDCENLLKRFLVLNPIKRGTLE----QIMKDRWINAGHEEDELKPFVEPELD 286

Query: 687 RPME 690
              +
Sbjct: 287 ISDQ 290

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score =  122 bits (308), Expect = 1e-30
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           +  + L++ LG G  G V L+    T    A+K++D               ++EI   ++
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD----CPENIKKEICINKM 61

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           L+H  +   Y H        L +EYC GG+L   R         E  A+ +  +++  + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFD-RIEPDIG-MPEPDAQRFFHQLMAGVV 119

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS--LRCAVSPTLIKTS 493
           YLH +G+ +RD+KPEN+L+ +  ++ +SDF L+   R      L+   
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKM 167

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 568 SFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNVVGQQ 625
              GT  Y+APE++K    H   VD W+ GI L  +L G+ P+    +      +   ++
Sbjct: 166 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKK 225

Query: 626 LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
                      A   L+  +LV+ P  R+ +     +IK+  ++
Sbjct: 226 TYLNPWKKIDSAPLALLHKILVENPSARITIP----DIKKDRWY 265

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score =  120 bits (304), Expect = 1e-30
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 2/162 (1%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           + F  L+++G G+ GSV+        C +A+K   K    S  +    +       L  H
Sbjct: 11  TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQH 70

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTL--RQRQPGKHFSEYAARFYAAEVLLALEY 448
             +   ++ +  D    +  EYC GG L        +   +F E   +    +V   L Y
Sbjct: 71  SHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRY 130

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI 490
           +H + +V+ D+KP N+ +        +  +       S  ++
Sbjct: 131 IHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVM 172

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 567 MSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
               G   +LA E+++    H    D +   + +      +   +        ++ + Q 
Sbjct: 188 QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRN----GDQWHEIRQG 243

Query: 626 LRFPDSPAT-SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
            R P  P   S    +L++ ++  +P+ R      A  + +H  
Sbjct: 244 -RLPRIPQVLSQEFTELLKVMIHPDPERRP----SAMALVKHSV 282

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score =  121 bits (307), Expect = 1e-30
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 6/155 (3%)

Query: 331 SHFRLLKR-LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           + + L  + LG G    V      ST   +A K + K     +        E  +L+L  
Sbjct: 28  NFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRR-GQDCRAEILHEIAVLELAK 86

Query: 390 H-PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
             P +  L+  +E      L++EY  GG++ +L   +  +  SE        ++L  + Y
Sbjct: 87  SCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYY 146

Query: 449 LHMLGVVYRDLKPENVLV---RDDGHIMLSDFDLS 480
           LH   +V+ DLKP+N+L+      G I + DF +S
Sbjct: 147 LHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMS 181

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
            +GT EYLAPEI+  +   +A D W  GI  + LL   +PF G  N+ T  N+    + +
Sbjct: 193 IMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDY 252

Query: 629 PDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP 686
            +    + S  + D I+ LLVK P+ R      A     H + +  ++  +         
Sbjct: 253 SEETFSSVSQLATDFIQSLLVKNPEKRP----TAEICLSHSWLQQWDFENLFHPEETSSS 308

Query: 687 RPM 689
              
Sbjct: 309 SQT 311

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score =  125 bits (315), Expect = 4e-30
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 12/159 (7%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            + + +RLG G  G V       T    A+K   +      K   R   E +I++ L+HP
Sbjct: 15  PWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSP--KNRERWCLEIQIMKKLNHP 72

Query: 392 FLPTLY------THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLL 444
            + +             +    L MEYC GGDL   L Q +      E   R   +++  
Sbjct: 73  NVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISS 132

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGH---IMLSDFDLS 480
           AL YLH   +++RDLKPEN++++         + D   +
Sbjct: 133 ALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYA 171

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 72.0 bits (176), Expect = 3e-13
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 26/128 (20%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
            FVGT +YLAPE+++ + +   VD+W+FG    E + G  PF  +         V ++  
Sbjct: 182 EFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSN 241

Query: 628 FPD----------------------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ 665
                                    S   +      ++ +L+   + R        +   
Sbjct: 242 EHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDP----QNPN 297

Query: 666 HPFFEGVN 673
              F+ ++
Sbjct: 298 VGCFQALD 305

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score =  120 bits (304), Expect = 5e-30
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 16/155 (10%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDH 390
            + + + +G G           +T   FA+K++DK+     +       E EIL +   H
Sbjct: 23  GYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTE-------EIEILLRYGQH 75

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P + TL   ++  ++  +V E   GG+L   + ++   K FSE  A      +   +EYL
Sbjct: 76  PNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQ---KFFSEREASAVLFTITKTVEYL 132

Query: 450 HMLGVVYRDLKPENVLVRDDGH----IMLSDFDLS 480
           H  GVV+RDLKP N+L  D+      I + DF  +
Sbjct: 133 HAQGVVHRDLKPSNILYVDESGNPESIRICDFGFA 167

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 82.0 bits (203), Expect = 6e-17
 Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 9/138 (6%)

Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG--NRATLFNVVGQ 624
           M+   T  ++APE+++ +G+ +A D W+ G+ L+ +L G TPF          +   +G 
Sbjct: 178 MTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGS 237

Query: 625 -QLRFPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCST 681
            +         + S  ++DL+  +L  +P  RL     A  + +HP+    +        
Sbjct: 238 GKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRL----TAALVLRHPWIVHWDQLPQYQLN 293

Query: 682 PPEVPRPMEAELPGKFGA 699
             + P  ++  +   + A
Sbjct: 294 RQDAPHLVKGAMAATYSA 311

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score =  119 bits (301), Expect = 9e-30
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS-----RKKLTRAQTEREI 384
              +  +  LG G  G V+ +          +K + K  +         KL +   E  I
Sbjct: 23  SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAI 82

Query: 385 LQLLDHPFLPTLYTHFETDRFSCLVME-YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVL 443
           L  ++H  +  +   FE   F  LVME +  G DL     R P     E  A +   +++
Sbjct: 83  LSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHP--RLDEPLASYIFRQLV 140

Query: 444 LALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            A+ YL +  +++RD+K EN+++ +D  I L DF  +
Sbjct: 141 SAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSA 177

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 14/127 (11%)

Query: 569 FVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           F GT EY APE++ G    G  ++ W+ G+ L+ L++ + PF        L   V   + 
Sbjct: 189 FCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCE------LEETVEAAIH 242

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF-EGVNWALIRCSTPPEVP 686
            P     S     L+ GLL   P+ R  ++    ++   P+  + VN A         V 
Sbjct: 243 PPYLV--SKELMSLVSGLLQPVPERRTTLE----KLVTDPWVTQPVNLADYTWEEVFRVN 296

Query: 687 RPMEAEL 693
           +P    L
Sbjct: 297 KPESGVL 303

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score =  121 bits (305), Expect = 2e-29
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 8/152 (5%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           H+ L   LG G  G V + +   T    A+K++++  + S   + + + E + L+L  HP
Sbjct: 17  HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHP 76

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLH---TLRQRQPGKHFSEYAARFYAAEVLLALEY 448
            +  LY    T     +VMEY  GG+L        R       E  +R    ++L  ++Y
Sbjct: 77  HIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGR-----LDEKESRRLFQQILSGVDY 131

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            H   VV+RDLKPENVL+    +  ++DF LS
Sbjct: 132 CHRHMVVHRDLKPENVLLDAHMNAKIADFGLS 163

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 569 FVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQL 626
             G+  Y APE+I G    G  VD W+ G+ L+ LL G  PF    +  TLF  +     
Sbjct: 175 SCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD-HVPTLFKKICDGIF 233

Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             P     + +   L++ +L  +P  R  +K    +I++H +F
Sbjct: 234 YTPQY--LNPSVISLLKHMLQVDPMKRATIK----DIREHEWF 270

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score =  117 bits (295), Expect = 6e-29
 Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 9/152 (5%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            + + + LG G  G V L+    T+   A+K + +  L       R + E   L+LL HP
Sbjct: 10  PYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHP 69

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLH---TLRQRQPGKHFSEYAARFYAAEVLLALEY 448
            +  LY    T     +V+EY  GG+L      ++R      +E   R +  +++ A+EY
Sbjct: 70  HIIKLYDVITTPTDIVMVIEYA-GGELFDYIVEKKR-----MTEDEGRRFFQQIICAIEY 123

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            H   +V+RDLKPEN+L+ D+ ++ ++DF LS
Sbjct: 124 CHRHKIVHRDLKPENLLLDDNLNVKIADFGLS 155

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 571 GTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
           G+  Y APE+I G+   G  VD W+ GI L+ +L G+ PF           V       P
Sbjct: 169 GSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMP 228

Query: 630 DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           D    S  ++ LIR ++V +P  R+ ++    EI++ P+F
Sbjct: 229 DF--LSPGAQSLIRRMIVADPMQRITIQ----EIRRDPWF 262

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score =  115 bits (289), Expect = 4e-28
 Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 14/161 (8%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-Q 386
           LG    R+ + L  G    VY ++   +   +A+K +        + + +   E   + +
Sbjct: 25  LGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQ---EVCFMKK 81

Query: 387 LLDHPFLPTLYTHFETDRFS--------CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFY 438
           L  HP +    +     +           L+ E C G  +  L++ +     S       
Sbjct: 82  LSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKI 141

Query: 439 AAEVLLALEYLHMLG--VVYRDLKPENVLVRDDGHIMLSDF 477
             +   A++++H     +++RDLK EN+L+ + G I L DF
Sbjct: 142 FYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDF 182

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 72.9 bits (179), Expect = 5e-14
 Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 16/139 (11%)

Query: 567 MSFVGTHEYLAPEII---KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
           ++   T  Y  PEII        G   D W  G  L+ L + + PF+          +V 
Sbjct: 208 ITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR----IVN 263

Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPP 683
            +   P           LIR +L   P+ RL +     E+           A  R +  P
Sbjct: 264 GKYSIPPHDTQYTVFHSLIRAMLQVNPEERLSI----AEVVHQLQ----EIAAAR-NVNP 314

Query: 684 EVPRPMEAELPGKFGAVDP 702
           + P     E  G +G+   
Sbjct: 315 KSPITELLEQNGGYGSATL 333

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score =  114 bits (288), Expect = 7e-28
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 12/155 (7%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
              +  +K +G G+ G   L     T+   A+K +++              +REI   + 
Sbjct: 19  SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIER------GAAIDENVQREIINHRS 72

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           L HP +        T     ++MEY  GG+L+  R    G+ FSE  ARF+  ++L  + 
Sbjct: 73  LRHPNIVRFKEVILTPTHLAIIMEYASGGELYE-RICNAGR-FSEDEARFFFQQLLSGVS 130

Query: 448 YLHMLGVVYRDLKPENVLV--RDDGHIMLSDFDLS 480
           Y H + + +RDLK EN L+       + + DF  S
Sbjct: 131 YCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYS 165

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 568 SFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-----NV 621
           S VGT  Y+APE++  +   G   D W+ G+ L+ +L G  PF+        +      +
Sbjct: 176 STVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDP-EEPRDYRKTIQRI 234

Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           +  +   PD    S     LI  + V +P  R+ +     EIK H +F
Sbjct: 235 LSVKYSIPDDIRISPECCHLISRIFVADPATRISIP----EIKTHSWF 278

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score =  114 bits (287), Expect = 8e-28
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 16/152 (10%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPT 395
           + LG G  G V       T    A+K++  +  A +        E +   Q    P +  
Sbjct: 35  QVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQ--------EVDHHWQASGGPHIVC 86

Query: 396 LYTHFETDRFSC----LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
           +   +E          ++ME   GG+L +  Q +  + F+E  A     ++  A+++LH 
Sbjct: 87  ILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHS 146

Query: 452 LGVVYRDLKPENVLVRD---DGHIMLSDFDLS 480
             + +RD+KPEN+L      D  + L+DF  +
Sbjct: 147 HNIAHRDVKPENLLYTSKEKDAVLKLTDFGFA 178

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 10/111 (9%)

Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT---LFNVVG 623
            +   T  Y+APE++  E +  + D W+ G+ ++ LL G  PF  +  +A    +   + 
Sbjct: 187 QTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIR 246

Query: 624 Q-QLRFPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
             Q  FP+      S  ++ LIR LL  +P  RL      T+   HP+   
Sbjct: 247 LGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERL----TITQFMNHPWINQ 293

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score =  114 bits (286), Expect = 3e-27
 Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 16/188 (8%)

Query: 301 TGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFA 360
                 P     P++     ++ +   +   +    + LG G  G V       T+  FA
Sbjct: 32  PAQPPPPPPQQFPQFHVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFA 91

Query: 361 MKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPTLYTHFET----DRFSCLVMEYCPG 415
           +K++     A R        E E+  +    P +  +   +E      +   +VME   G
Sbjct: 92  LKMLQDCPKARR--------EVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDG 143

Query: 416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV---RDDGHI 472
           G+L +  Q +  + F+E  A      +  A++YLH + + +RD+KPEN+L    R +  +
Sbjct: 144 GELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAIL 203

Query: 473 MLSDFDLS 480
            L+DF  +
Sbjct: 204 KLTDFGFA 211

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 10/107 (9%)

Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT---LFNVVG 623
            +   T  Y+APE++  E +  + D W+ G+ ++ LL G  PF  +   A    +   + 
Sbjct: 221 TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIR 280

Query: 624 Q-QLRFPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHP 667
             Q  FP+      S   + LIR LL  EP  R+      TE   HP
Sbjct: 281 MGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRM----TITEFMNHP 323

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score =  112 bits (280), Expect = 7e-27
 Identities = 33/182 (18%), Positives = 51/182 (28%), Gaps = 32/182 (17%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
             +L++ L  GD   V+L         FA+KV    +  SR +L R          L   
Sbjct: 63  KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGE 122

Query: 392 FLPTLYTHFETDRFS--------------------------CLVMEYCPGGDLHTL---- 421
                         S                           L+M      DL  L    
Sbjct: 123 SPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAA-SVDLELLFSTL 181

Query: 422 -RQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                        A     A+++     L   G+V+    P+N+ +  DG +ML D    
Sbjct: 182 DFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSAL 241

Query: 481 LR 482
            +
Sbjct: 242 WK 243

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 88.2 bits (218), Expect = 8e-19
 Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 13/120 (10%)

Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEG--HGSAVDWWTFGIFLHELLYGKTPFKGSGN-- 614
                 R  +      Y   E +         A++ W  G+ ++ +     PF       
Sbjct: 241 LWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGI 300

Query: 615 -----RATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
                R +L       L F          + LI   L  + + RL       E  + P F
Sbjct: 301 KGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRL----LPLEAMETPEF 356

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score =  109 bits (274), Expect = 2e-26
 Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 16/151 (10%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ-LLDHPFLPT 395
           + LG G  G V       T+  FA+K++     A R        E E+       P +  
Sbjct: 24  QVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR--------EVELHWRASQCPHIVR 75

Query: 396 LYTHFET----DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
           +   +E      +   +VME   GG+L +  Q +  + F+E  A      +  A++YLH 
Sbjct: 76  IVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS 135

Query: 452 LGVVYRDLKPENVLVRD---DGHIMLSDFDL 479
           + + +RD+KPEN+L      +  + L+DF  
Sbjct: 136 INIAHRDVKPENLLYTSKRPNAILKLTDFGF 166

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 11/102 (10%)

Query: 576 LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT---LFNVVGQ-QLRFPDS 631
            A E    E +  + D W+ G+ ++ LL G  PF  +   A    +   +   Q  FP+ 
Sbjct: 166 FAKETTG-EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNP 224

Query: 632 P--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
                S   + LIR LL  EP  R+      TE   HP+   
Sbjct: 225 EWSEVSEEVKMLIRNLLKTEPTQRM----TITEFMNHPWIMQ 262

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score =  109 bits (275), Expect = 2e-26
 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 15/202 (7%)

Query: 288 SSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSV 347
            S      + S +    +     ND     +   + ++ +     +++   LG G  GSV
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMAPCNDLHATKLAPGKEKEPLES--QYQVGPLLGSGGFGSV 59

Query: 348 YLSELSSTRCYFAMKVMDKASLASRKKLTR-AQTEREI--LQLLDHPFLP---TLYTHFE 401
           Y     S     A+K ++K  ++   +L    +   E+  L+ +   F      L   FE
Sbjct: 60  YSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGF-SGVIRLLDWFE 118

Query: 402 TDRFSCLVMEYC-PGGDL-HTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDL 459
                 L++E   P  DL   + +R       E  AR +  +VL A+ + H  GV++RD+
Sbjct: 119 RPDSFVLILERPEPVQDLFDFITERGA---LQEELARSFFWQVLEAVRHCHNCGVLHRDI 175

Query: 460 KPENVLV-RDDGHIMLSDFDLS 480
           K EN+L+  + G + L DF   
Sbjct: 176 KDENILIDLNRGELKLIDFGSG 197

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 20/127 (15%)

Query: 569 FVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           F GT  Y  PE I+    HG +   W+ GI L++++ G  PF+          ++  Q+ 
Sbjct: 208 FDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQVF 261

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPR 687
           F      S   + LIR  L   P  R   +    EI+ HP+ + V         P E   
Sbjct: 262 FRQRV--SSECQHLIRWCLALRPSDRPTFE----EIQNHPWMQDVL-------LPQETAE 308

Query: 688 PMEAELP 694
                L 
Sbjct: 309 IHLHSLS 315

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score =  111 bits (279), Expect = 3e-26
 Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 19/156 (12%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HP 391
           F     LG G  G++    +   R   A+K +        +  + A  E ++L+  D HP
Sbjct: 26  FCPKDVLGHGAEGTIVYRGMFDNRDV-AVKRILP------ECFSFADREVQLLRESDEHP 78

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQR--QPGKHFSEYAARFYAAEVLLALEYL 449
            +   +   +  +F  + +E C      TL++   Q               +    L +L
Sbjct: 79  NVIRYFCTEKDRQFQYIAIELCAA----TLQEYVEQKDFAHLGLEPITLLQQTTSGLAHL 134

Query: 450 HMLGVVYRDLKPENVLVRDDGH-----IMLSDFDLS 480
           H L +V+RDLKP N+L+           M+SDF L 
Sbjct: 135 HSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLC 170

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 9/115 (7%)

Query: 560 EPTAARSMSFVGTHEYLAPEIIKG---EGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNR 615
             + +R     GT  ++APE++     E     VD ++ G   + ++  G  PF  S  R
Sbjct: 177 RHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQR 236

Query: 616 ATLFNVVGQQLRFPDSPAT-SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
                +    L            +R+LI  ++  +PQ R      A  + +HPFF
Sbjct: 237 QANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRP----SAKHVLKHPFF 287

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score =  108 bits (273), Expect = 3e-26
 Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 17/163 (10%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQT-EREI--LQ 386
            + +RL   LG G  G+V+     + R   A+KV+ +  +     L+ + T   E+  L 
Sbjct: 30  EAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLW 89

Query: 387 LLD----HPFLPTLYTHFETDRFSCLVMEY-CPGGDLH---TLRQRQPGKHFSEYAARFY 438
            +     HP +  L   FET     LV+E   P  DL    T +         E  +R +
Sbjct: 90  KVGAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGP-----LGEGPSRCF 144

Query: 439 AAEVLLALEYLHMLGVVYRDLKPENVLV-RDDGHIMLSDFDLS 480
             +V+ A+++ H  GVV+RD+K EN+L+    G   L DF   
Sbjct: 145 FGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSG 187

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 75.4 bits (186), Expect = 6e-15
 Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 16/127 (12%)

Query: 569 FVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           F GT  Y  PE I     H      W+ GI L++++ G  PF+          ++  +L 
Sbjct: 198 FDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ------EILEAELH 251

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF-EGVNWALIRCSTPPEVP 686
           FP     S     LIR  L  +P  R  ++    EI   P+         +  S     P
Sbjct: 252 FPAH--VSPDCCALIRRCLAPKPSSRPSLE----EILLDPWMQTPAEDVPLNPSKGG--P 303

Query: 687 RPMEAEL 693
            P+   L
Sbjct: 304 APLAWSL 310

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score =  110 bits (276), Expect = 8e-26
 Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 27/169 (15%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ-LLD 389
           +     K LG G  G+V        R   A+K M             A  E ++L    D
Sbjct: 15  NLVVSEKILGYGSSGTVVFQGSFQGRPV-AVKRMLI------DFCDIALMEIKLLTESDD 67

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTL-----RQRQPGKHFSEYAARFYAAEVLL 444
           HP +   Y    TDRF  + +E C   +L  L        +  K   EY       ++  
Sbjct: 68  HPNVIRYYCSETTDRFLYIALELC-NLNLQDLVESKNVSDENLKLQKEYNPISLLRQIAS 126

Query: 445 ALEYLHMLGVVYRDLKPENVLV-------------RDDGHIMLSDFDLS 480
            + +LH L +++RDLKP+N+LV              ++  I++SDF L 
Sbjct: 127 GVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLC 175

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 19/115 (16%)

Query: 568 SFVGTHEYLAPEIIKGEGH-------GSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLF 619
           +  GT  + APE+++   +         ++D ++ G   + +L  GK PF      +   
Sbjct: 191 NPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPF--GDKYSRES 248

Query: 620 NVVGQQLRFPDSPAT-----SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           N++       +            + DLI  ++  +P  R      A ++ +HP F
Sbjct: 249 NIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRP----TAMKVLRHPLF 299

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score =  108 bits (270), Expect = 3e-25
 Identities = 64/400 (16%), Positives = 121/400 (30%), Gaps = 102/400 (25%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-- 388
             + ++++LG G   +V+LS     + + AMKV+     ++      A  E  +L+ +  
Sbjct: 37  GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVV----KSAEHYTETALDEIRLLKSVRN 92

Query: 389 ---DHP---FLPTLYTHFETD----RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFY 438
              + P    +  L   F+         C+V E   G  L     +   +       +  
Sbjct: 93  SDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKI 151

Query: 439 AAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDS 497
             +VL  L+YLH    +++ D+KPEN+L+  +   +      +     S           
Sbjct: 152 IQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGA----PPPSG 207

Query: 498 DPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPEL 557
                 P  +       +EP +          +I    N     K  +E           
Sbjct: 208 SAVSTAPATAGNFLVNPLEPKNAEKLK----VKIADLGNACWVHKHFTED---------- 253

Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN--- 614
                       + T +Y + E++ G G+ +  D W+      EL  G   F+       
Sbjct: 254 ------------IQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEY 301

Query: 615 ---------------------------------------------RATLFNVVGQQLRFP 629
                                                           LF V+ ++  + 
Sbjct: 302 TRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWS 361

Query: 630 DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
              A  +   D +  +L   P+ R      A E  +HP+ 
Sbjct: 362 QEEAAGFT--DFLLPMLELIPEKRA----TAAECLRHPWL 395

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score =  105 bits (265), Expect = 5e-25
 Identities = 47/225 (20%), Positives = 75/225 (33%), Gaps = 15/225 (6%)

Query: 278 AKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAI----LAIRARDGILGMSHF 333
              S+S     S  S    WS+ +    +     +     +    L     +    +   
Sbjct: 1   GSGSVSSGQAHSLASLAKTWSSGSAKLQRLGPETEDNEGVLLTEKLKPVDYEYREEVHWM 60

Query: 334 RLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFL 393
               R+G G  G V+  +   T    A+K +                E      L  P +
Sbjct: 61  THQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVE--------ELVACAGLSSPRI 112

Query: 394 PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG 453
             LY       +  + ME   GG L  L ++       E  A +Y  + L  LEYLH   
Sbjct: 113 VPLYGAVREGPWVNIFMELLEGGSLGQLIKQ--MGCLPEDRALYYLGQALEGLEYLHTRR 170

Query: 454 VVYRDLKPENVLVRDDG-HIMLSDFDLSLRCAVSPTLIKTSSLDS 497
           +++ D+K +NVL+  DG    L DF  +L            + D 
Sbjct: 171 ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDY 215

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 551 SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFK 610
           +  L       +        GT  ++APE++ G+   + VD W+    +  +L G  P+ 
Sbjct: 198 ALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWT 257

Query: 611 GSGNRATLFNVVGQQLRFPDSPAT-SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
                     +  +     + P + +  +   I+  L KEP HR      A E+++   
Sbjct: 258 QYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRA----SAMELRRKVG 312

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score =  106 bits (267), Expect = 5e-25
 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 331 SHFRLLKRLGCG--DIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
             + LL  +G G  D+ +V L+    T  Y  ++ ++  +  S + +T  Q E  + +L 
Sbjct: 25  GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEA-CSNEMVTFLQGELHVSKLF 83

Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
           +HP +      F  D    +V  +   G    L         +E A  +    VL AL+Y
Sbjct: 84  NHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDY 143

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
           +H +G V+R +K  ++L+  DG + LS  
Sbjct: 144 IHHMGYVHRSVKASHILISVDGKVYLSGL 172

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score =  103 bits (259), Expect = 1e-24
 Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 5/156 (3%)

Query: 339 LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT 398
           LG G  G VY     S +   A+K + +      + L     E  + + L H  +     
Sbjct: 30  LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPL---HEEIALHKHLKHKNIVQYLG 86

Query: 399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGK-HFSEYAARFYAAEVLLALEYLHMLGVVYR 457
            F  + F  + ME  PGG L  L + + G    +E    FY  ++L  L+YLH   +V+R
Sbjct: 87  SFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHR 146

Query: 458 DLKPENVLV-RDDGHIMLSDFDLSLRCAVSPTLIKT 492
           D+K +NVL+    G + +SDF  S R A      +T
Sbjct: 147 DIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTET 182

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 17/132 (12%)

Query: 562 TAARSMSFVGTHEYLAPEIIKG--EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATL 618
               + +F GT +Y+APEII     G+G A D W+ G  + E+  GK PF   G   A +
Sbjct: 176 INPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAM 235

Query: 619 FNVVGQQLRFPDSPAT-SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI 677
           F  VG     P+ P + S  ++  I      +P  R      A ++    F        +
Sbjct: 236 FK-VGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRA----CANDLLVDEF--------L 282

Query: 678 RCSTPPEVPRPM 689
           + S+  +  +P 
Sbjct: 283 KVSSKKKKTQPK 294

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score =  103 bits (258), Expect = 8e-24
 Identities = 32/224 (14%), Positives = 60/224 (26%), Gaps = 45/224 (20%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL---- 388
                 LG  D  +   +    T   F + V           + + + E   L+LL    
Sbjct: 80  LVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIK 139

Query: 389 ------------------DHPFLPTLYTHFETDRFSCLVMEY----CPGGDLHTL----- 421
                               P    +      +R   ++  +        +L T      
Sbjct: 140 NQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLL 199

Query: 422 RQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL 481
                 K    +A      +V+  L  LH  G+V+  L+P ++++   G + L+ F+  +
Sbjct: 200 SHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLV 259

Query: 482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPA 525
           R                 S   P G     P       +     
Sbjct: 260 R--------------DGASAVSPIGRGFAPPETTAERMLPFGQH 289

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 90.1 bits (223), Expect = 3e-19
 Identities = 23/159 (14%), Positives = 40/159 (25%), Gaps = 18/159 (11%)

Query: 560 EPTAARSMSFVGTHEYLAPEIIKGEGHG-----SAVDWWTFGIFLHELLYGKTPFKGSGN 614
               +         E  A  ++    H       A D WT G+ ++ +     P      
Sbjct: 263 ASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAA 322

Query: 615 RATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
                     +  F          R L+ G L    + RL       +  + P +E +  
Sbjct: 323 LGGS------EWIFRSCKNIPQPVRALLEGFLRYPKEDRL----LPLQAMETPEYEQLRT 372

Query: 675 ALIRCS---TPPEVPRPMEAELPGKFGAVDPVGVSSSSS 710
            L            P       P      D  G + + +
Sbjct: 373 ELSAALPLYQTDGEPTREGGAPPSGTSQPDEAGAAEAVT 411

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score =  100 bits (251), Expect = 2e-23
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 4/146 (2%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            + ++  LG G  G VY ++   T    A KV++     S ++L     E EIL   DHP
Sbjct: 20  VWEIVGELGDGAFGKVYKAKNKETGALAAAKVIE---TKSEEELEDYIVEIEILATCDHP 76

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
           ++  L   +  D    +++E+CPGG +  +         +E   +    ++L AL +LH 
Sbjct: 77  YIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRG-LTEPQIQVVCRQMLEALNFLHS 135

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDF 477
             +++RDLK  NVL+  +G I L+DF
Sbjct: 136 KRIIHRDLKAGNVLMTLEGDIRLADF 161

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 16/117 (13%)

Query: 562 TAARSMSFVGTHEYLAPEII-----KGEGHGSAVDWWTFGIFLHELLYGKTP-FKGSGNR 615
           T  +  SF+GT  ++APE++     K   +    D W+ GI L E+   + P  + +  R
Sbjct: 170 TLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR 229

Query: 616 ATLFNVVGQ---QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
             L  +       L  P     S   RD ++  L K P+ R      A ++ +HPF 
Sbjct: 230 V-LLKIAKSDPPTLLTPSK--WSVEFRDFLKIALDKNPETRP----SAAQLLEHPFV 279

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 99.7 bits (249), Expect = 3e-23
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 12/169 (7%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP- 391
            +    +G G   +VY    + T    A   +    L ++ +  R + E E+L+ L HP 
Sbjct: 28  LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL-TKSERQRFKEEAEMLKGLQHPN 86

Query: 392 ---FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
              F  +  +  +  +   LV E    G L T  +R   K       R +  ++L  L++
Sbjct: 87  IVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQF 144

Query: 449 LH--MLGVVYRDLKPENVLV-RDDGHIMLSDFDLS--LRCAVSPTLIKT 492
           LH     +++RDLK +N+ +    G + + D  L+   R + +  +I T
Sbjct: 145 LHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGT 193

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
            A+ + + +GT E++APE+ + E +  +VD + FG+ + E+   + P+    N A ++  
Sbjct: 183 RASFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRR 241

Query: 622 VGQQLRFPDSP--ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           V   ++ P S         +++I G + +    R        ++  H FF
Sbjct: 242 VTSGVK-PASFDKVAIPEVKEIIEGCIRQNKDERY----SIKDLLNHAFF 286

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 98.9 bits (247), Expect = 6e-23
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 5/147 (3%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             F  L+++G G  G V+    + T+   A+K++D        +    Q E  +L   D 
Sbjct: 22  ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDI--QQEITVLSQCDS 79

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P++   Y  +  D    ++MEY  GG    L +  P     E        E+L  L+YLH
Sbjct: 80  PYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYLH 136

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDF 477
               ++RD+K  NVL+ + G + L+DF
Sbjct: 137 SEKKIHRDIKAANVLLSEHGEVKLADF 163

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 19/115 (16%)

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTP-FKGSGNRATLFN 620
           T  +  +FVGT  ++APE+IK   + S  D W+ GI   EL  G+ P  +    +  LF 
Sbjct: 172 TQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKV-LFL 230

Query: 621 VVGQQLRFPDSPAT------SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           +       P +         S   ++ +   L KEP  R      A E+ +H F 
Sbjct: 231 I-------PKNNPPTLEGNYSKPLKEFVEACLNKEPSFRP----TAKELLKHKFI 274

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 22/160 (13%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTE-----REI- 384
             + L + +G G    V  +  +  +   A+K ++         L + QT      +EI 
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRIN---------LEKCQTSMDELLKEIQ 65

Query: 385 -LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTL------RQRQPGKHFSEYAARF 437
            +    HP + + YT F       LVM+   GG +  +      +         E     
Sbjct: 66  AMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIAT 125

Query: 438 YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
              EVL  LEYLH  G ++RD+K  N+L+ +DG + ++DF
Sbjct: 126 ILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADF 165

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 15/129 (11%)

Query: 551 SSTLPELVAEPTAARSMSFVGTHEYLAPEIIK-GEGHGSAVDWWTFGIFLHELLYGKTPF 609
           S+ L             +FVGT  ++APE+++   G+    D W+FGI   EL  G  P+
Sbjct: 168 SAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPY 227

Query: 610 -KGSGNRATLFNVV--------GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGA 660
            K    +  L   +                      + R +I   L K+P+ R      A
Sbjct: 228 HKYPPMKV-LMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRP----TA 282

Query: 661 TEIKQHPFF 669
            E+ +H FF
Sbjct: 283 AELLRHKFF 291

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 97.1 bits (242), Expect = 4e-22
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
                ++G G  G V L+    +    A+K+MD   L  +++      E  I++   H  
Sbjct: 47  LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMD---LRKQQRRELLFNEVVIMRDYQHFN 103

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  +Y  +       ++ME+  GG L  +  +      +E         VL AL YLH  
Sbjct: 104 VVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVR---LNEEQIATVCEAVLQALAYLHAQ 160

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA-VSPTLIKTSSL 495
           GV++RD+K +++L+  DG + LSDF     CA +S  + K  SL
Sbjct: 161 GVIHRDIKSDSILLTLDGRVKLSDFGF---CAQISKDVPKRKSL 201

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 7/111 (6%)

Query: 561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTP-FKGSGNRATLF 619
               +  S VGT  ++APE+I    + + VD W+ GI + E++ G+ P F  S  +A + 
Sbjct: 193 KDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQA-MK 251

Query: 620 NVVGQQL-RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            +      +  +S   S   RD +  +LV++PQ R      A E+  HPF 
Sbjct: 252 RLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERA----TAQELLDHPFL 298

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 95.8 bits (239), Expect = 6e-22
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             +   +++G G  G+VY +   +T    A++ M+   L  + K      E  +++   +
Sbjct: 20  KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMN---LQQQPKKELIINEILVMRENKN 76

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P +      +       +VMEY  GG L  +          E        E L ALE+LH
Sbjct: 77  PNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETC---MDEGQIAAVCRECLQALEFLH 133

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA-VSPTLIKTSSL 495
              V++RD+K +N+L+  DG + L+DF     CA ++P   K S++
Sbjct: 134 SNQVIHRDIKSDNILLGMDGSVKLTDFGF---CAQITPEQSKRSTM 176

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 15/131 (11%)

Query: 561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTP-FKGSGNRATLF 619
           P  ++  + VGT  ++APE++  + +G  VD W+ GI   E++ G+ P    +  RA L+
Sbjct: 168 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA-LY 226

Query: 620 NVVGQQL-RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIR 678
            +         +    S   RD +   L  + + R      A E+ QH F        ++
Sbjct: 227 LIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRG----SAKELLQHQF--------LK 274

Query: 679 CSTPPEVPRPM 689
            + P     P+
Sbjct: 275 IAKPLSSLTPL 285

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 96.5 bits (240), Expect = 1e-21
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 7/166 (4%)

Query: 314 RWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD-KASLASR 372
           R +A L  + + G L    F  +  LG G+ G V+      +    A K++  +   A R
Sbjct: 16  RLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIR 75

Query: 373 KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSE 432
            ++ R   E ++L   + P++   Y  F +D    + ME+  GG L  + ++       E
Sbjct: 76  NQIIR---ELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK--AGRIPE 130

Query: 433 YAARFYAAEVLLALEYLH-MLGVVYRDLKPENVLVRDDGHIMLSDF 477
                 +  V+  L YL     +++RD+KP N+LV   G I L DF
Sbjct: 131 QILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDF 176

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 17/89 (19%), Positives = 32/89 (35%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR 627
           SFVGT  Y++PE ++G  +    D W+ G+ L E+  G+ P      +        Q   
Sbjct: 189 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEG 248

Query: 628 FPDSPATSYASRDLIRGLLVKEPQHRLGV 656
                     +          + +  + +
Sbjct: 249 DAAETPPRPRTPGRPLNKFGMDSRPPMAI 277

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 95.9 bits (239), Expect = 1e-21
 Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 2/147 (1%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             F  L+ +G G  G+VY +         A+K M  +   S +K      E   LQ L H
Sbjct: 54  KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH 113

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P        +  +  + LVMEYC G     L   +  K   E          L  L YLH
Sbjct: 114 PNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLH 171

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDF 477
              +++RD+K  N+L+ + G + L DF
Sbjct: 172 SHNMIHRDVKAGNILLSEPGLVKLGDF 198

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 11/157 (7%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLD 389
             F L++ +G G  G VY      T    A+KVMD     +  +    + E  +L +   
Sbjct: 24  GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD----VTGDEEEEIKQEINMLKKYSH 79

Query: 390 HPFLPTLYTHFETDRFSC------LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVL 443
           H  + T Y  F             LVME+C  G +  L +   G    E    +   E+L
Sbjct: 80  HRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREIL 139

Query: 444 LALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             L +LH   V++RD+K +NVL+ ++  + L DF +S
Sbjct: 140 RGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVS 176

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 25/121 (20%)

Query: 562 TAARSMSFVGTHEYLAPEIIKGE-----GHGSAVDWWTFGIFLHELLYGKTP-FKGSGNR 615
           T  R  +F+GT  ++APE+I  +      +    D W+ GI   E+  G  P       R
Sbjct: 182 TVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMR 241

Query: 616 ATLFNVVGQQLRFPDSPAT-------SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
           A LF +       P +PA        S   +  I   LVK    R        ++ +HPF
Sbjct: 242 A-LFLI-------PRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRP----ATEQLMKHPF 289

Query: 669 F 669
            
Sbjct: 290 I 290

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 6/145 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F +L++LG G  GSVY +    T    A+K +          L     E  I+Q  D P 
Sbjct: 31  FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVP-----VESDLQEIIKEISIMQQCDSPH 85

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +   Y  +  +    +VMEYC  G +  + + +     +E          L  LEYLH +
Sbjct: 86  VVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKT-LTEDEIATILQSTLKGLEYLHFM 144

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDF 477
             ++RD+K  N+L+  +GH  L+DF
Sbjct: 145 RKIHRDIKAGNILLNTEGHAKLADF 169

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTP-FKGSGNRATLF 619
            T A+  + +GT  ++APE+I+  G+    D W+ GI   E+  GK P       RA +F
Sbjct: 177 DTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRA-IF 235

Query: 620 NVVGQQL-RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            +       F      S    D ++  LVK P+ R      AT++ QHPF 
Sbjct: 236 MIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRA----TATQLLQHPFV 282

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 94.6 bits (235), Expect = 3e-21
 Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 2/152 (1%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           + H  +++             +      +   +  D   L+S   +     +   +    
Sbjct: 61  LEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDW-PLSSPSPMDAPSVKIRRMDPFS 119

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYA-ARFYAAEVLLALEY 448
                          +  + M+ C   +L     R+      E+        ++  A+E+
Sbjct: 120 TKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEF 179

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           LH  G+++RDLKP N+    D  + + DF L 
Sbjct: 180 LHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLV 211

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 81.9 bits (202), Expect = 6e-17
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 560 EPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF 619
            P  A     VGT  Y++PE I G  +   VD ++ G+ L ELLY    F     R  + 
Sbjct: 227 MPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLY---SFSTQMERVRII 283

Query: 620 NVVGQQLRFPDSPATSYAS-RDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV 672
             V + L+FP      Y     +++ +L   P  R      AT+I ++  FE +
Sbjct: 284 TDV-RNLKFPLLFTQKYPQEHMMVQDMLSPSPTERP----EATDIIENAIFENL 332

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 92.5 bits (230), Expect = 8e-21
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 4/145 (2%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           +RLL   G       + +  ++     A+  +D   +     L    +    L  +D P 
Sbjct: 33  YRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPG 92

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  +     T     +V E+  GG L  +    P    S   A      +  A +  H  
Sbjct: 93  VARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSP----SPVGAIRAMQSLAAAADAAHRA 148

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDF 477
           GV      P  V V  DG ++L+  
Sbjct: 149 GVALSIDHPSRVRVSIDGDVVLAYP 173

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 12/89 (13%)

Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVVGQQL 626
           +     +              D    G  L+ LL  + P   +G R+ L         Q 
Sbjct: 170 LAYPATMPDA-------NPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQP 222

Query: 627 RFPDS--PATSYASRDLIRGLLVKEPQHR 653
             P        +    +    +  +   R
Sbjct: 223 IEPADIDRDIPFQISAVAARSVQGDGGIR 251

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 94.5 bits (235), Expect = 3e-20
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 15/152 (9%)

Query: 333 FRLLKRLGCGDIGSVYLSE--LSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           + +   +  G +G +YL+     + R    +K +  +  A       A  ER+ L  + H
Sbjct: 82  YEVKGCIAHGGLGWIYLALDRNVNGR-PVVLKGLVHSGDAE--AQAMAMAERQFLAEVVH 138

Query: 391 PFLPTLYTHFETDRFSC-----LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLA 445
           P +  ++   E           +VMEY  G  L   + +          A  Y  E+L A
Sbjct: 139 PSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPA 194

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
           L YLH +G+VY DLKPEN+++ ++  + L D 
Sbjct: 195 LSYLHSIGLVYNDLKPENIMLTEEQ-LKLIDL 225

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 563 AARSM----SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           A   +       GT  + APEI++  G   A D +T G  L  L        G       
Sbjct: 227 AVSRINSFGYLYGTPGFQAPEIVRT-GPTVATDIYTVGRTLAALTLDLPTRNG------- 278

Query: 619 FNVVGQQLRFPDSPATSYAS-RDLIRGLLVKEPQHR 653
                  L   D    +Y S   L+R  +  +P+ R
Sbjct: 279 --RYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQR 312

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 91.3 bits (227), Expect = 4e-20
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 6/170 (3%)

Query: 310 GNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL 369
           G+  +    L I  +     ++    L  +G G  G V+      T    A+K M ++  
Sbjct: 4   GSSGKQTGYLTIGGQRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSG- 62

Query: 370 ASRKKLTRAQTEREIL-QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGK 428
            ++++  R   + +++ +  D P++   +  F T+    + ME   G     L++R  G 
Sbjct: 63  -NKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-GTCAEKLKKRMQGP 120

Query: 429 HFSEYAARFYAAEVLLALEYLH-MLGVVYRDLKPENVLVRDDGHIMLSDF 477
              E         ++ AL YL    GV++RD+KP N+L+ + G I L DF
Sbjct: 121 -IPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDF 169

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 11/109 (10%)

Query: 568 SFVGTHEYLAPEIIK-----GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNV 621
              G   Y+APE I         +    D W+ GI L EL  G+ P+K        L  V
Sbjct: 183 RSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKV 242

Query: 622 V-GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           +  +    P     S   +  ++  L K+ + R        ++ +H F 
Sbjct: 243 LQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRP----KYNKLLEHSFI 287

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 90.5 bits (225), Expect = 7e-20
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 10/156 (6%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--- 384
                 + L  +G G  GSV       +    A+K +     ++  +  + Q   ++   
Sbjct: 19  FTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIR----STVDEKEQKQLLMDLDVV 74

Query: 385 LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ--RQPGKHFSEYAARFYAAEV 442
           ++  D P++   Y     +    + ME          +           E          
Sbjct: 75  MRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLAT 134

Query: 443 LLALEYLH-MLGVVYRDLKPENVLVRDDGHIMLSDF 477
           + AL +L   L +++RD+KP N+L+   G+I L DF
Sbjct: 135 VKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDF 170

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 569 FVGTHEYLAPEIIKGEGHGSA----VDWWTFGIFLHELLYGKTPFKGSGN-RATLFNVV- 622
             G   Y+APE I             D W+ GI L+EL  G+ P+    +    L  VV 
Sbjct: 185 DAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVK 244

Query: 623 GQQLRFPDSPATSYAS--RDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           G   +  +S    ++    + +   L K+   R        E+ +HPF 
Sbjct: 245 GDPPQLSNSEEREFSPSFINFVNLCLTKDESKRP----KYKELLKHPFI 289

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 88.8 bits (221), Expect = 1e-19
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 15/174 (8%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI---LQ 386
                 +  LG G  G V       +    A+K +     A+     + +   ++   ++
Sbjct: 6   ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIR----ATVNSQEQKRLLMDLDISMR 61

Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ-RQPGKHFSEYAARFYAAEVLLA 445
            +D PF  T Y     +    + ME          +Q    G+   E      A  ++ A
Sbjct: 62  TVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKA 121

Query: 446 LEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSD 498
           LE+LH  L V++RD+KP NVL+   G + + DF       +S  L+   + D D
Sbjct: 122 LEHLHSKLSVIHRDVKPSNVLINALGQVKMCDF------GISGYLVDDVAKDID 169

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 556 ELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSA----VDWWTFGIFLHELLYGKTPFKG 611
            LV     A+     G   Y+APE I  E +        D W+ GI + EL   + P+  
Sbjct: 159 YLVD--DVAKD-IDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDS 215

Query: 612 SGN-RATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
            G     L  VV +      +   S    D     L K  + R        E+ QHPFF
Sbjct: 216 WGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSKER----PTYPELMQHPFF 270

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 86.5 bits (215), Expect = 8e-19
 Identities = 39/165 (23%), Positives = 81/165 (49%), Gaps = 7/165 (4%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKK-LTRAQTEREILQLLDHP 391
           ++++ +LG G + +VYL+E +      A+K +       +++ L R + E      L H 
Sbjct: 13  YKIVDKLGGGGMSTVYLAEDTILNIKVAIKAI-FIPPREKEETLKRFEREVHNSSQLSHQ 71

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
            + ++    E D    LVMEY  G  L   +    P    S   A  +  ++L  +++ H
Sbjct: 72  NIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGP---LSVDTAINFTNQILDGIKHAH 128

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL 495
            + +V+RD+KP+N+L+  +  + + DF ++ +     +L +T+ +
Sbjct: 129 DMRIVHRDIKPQNILIDSNKTLKIFDFGIA-KALSETSLTQTNHV 172

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
           ++E +  ++   +GT +Y +PE  KGE      D ++ GI L+E+L G+ PF G     T
Sbjct: 161 LSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNG----ET 216

Query: 618 LFNVVGQQLR--FPDSPAT-----SYASRDLIRGLLVKEPQHR 653
             ++  + ++   P+           +  ++I     K+  +R
Sbjct: 217 AVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANR 259

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 14/156 (8%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
                + + +G G  G V  ++  +     A+K ++     S  +      E   L  ++
Sbjct: 7   YKEIEVEEVVGRGAFGVVCKAKWRAKDV--AIKQIE-----SESERKAFIVELRQLSRVN 59

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEY 448
           HP +  LY     +   CLVMEY  GG L+  L   +P  +++   A  +  +    + Y
Sbjct: 60  HPNIVKLYG-ACLNPV-CLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAY 117

Query: 449 LHML---GVVYRDLKPENVLVRDDGHIM-LSDFDLS 480
           LH +    +++RDLKP N+L+   G ++ + DF  +
Sbjct: 118 LHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTA 153

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKG-SGNRATLFNVVGQQ 625
            +  G+  ++APE+ +G  +    D +++GI L E++  + PF    G    +   V   
Sbjct: 161 TNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNG 220

Query: 626 LRFPDSPATSYASRDLIRGLLVKEPQHR 653
            R P           L+     K+P  R
Sbjct: 221 TRPPLIKNLPKPIESLMTRCWSKDPSQR 248

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 6/148 (4%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKK-LTRAQTEREILQLLDH 390
            +RL + +G G +G VY +E +      A+K+M   +L+S     TR Q E      L  
Sbjct: 35  PYRLRRLVGRGGMGDVYEAEDTVRERIVALKLM-SETLSSDPVFRTRMQREARTAGRLQE 93

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P +  ++   E D    + M    G DL   LR++ P    +   A     ++  AL+  
Sbjct: 94  PHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQGP---LAPPRAVAIVRQIGSALDAA 150

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDF 477
           H  G  +RD+KPEN+LV  D    L DF
Sbjct: 151 HAAGATHRDVKPENILVSADDFAYLVDF 178

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 11/102 (10%)

Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
             +    +  + VGT  Y+APE           D +     L+E L G  P++G      
Sbjct: 184 TTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGD----Q 239

Query: 618 LFNVVGQQLRFP------DSPATSYASRDLIRGLLVKEPQHR 653
           L +V+G  +           P    A   +I   + K P+ R
Sbjct: 240 L-SVMGAHINQAIPRPSTVRPGIPVAFDAVIARGMAKNPEDR 280

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH- 390
            +RL +++G G  G +YL    +     A+K+    +     +L     E +I +++   
Sbjct: 10  RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHI---ESKIYKMMQGG 64

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
             +PT+        ++ +VME   G  L  L      + FS       A +++  +EY+H
Sbjct: 65  VGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIH 122

Query: 451 MLGVVYRDLKPENVLV---RDDGHIMLSDFDLSLR 482
               ++RD+KP+N L+   +    + + DF L+ +
Sbjct: 123 SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK 157

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 85.1 bits (211), Expect = 4e-18
 Identities = 53/303 (17%), Positives = 99/303 (32%), Gaps = 68/303 (22%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           S     + LG G  G         T     MK + +    +++   +   E ++++ L+H
Sbjct: 10  SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLK---EVKVMRCLEH 66

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P +         D+    + EY  GG L  +  +     +       +A ++   + YLH
Sbjct: 67  PNVLKFIGVLYKDKRLNFITEYIKGGTLRGI-IKSMDSQYPWSQRVSFAKDIASGMAYLH 125

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCV 510
            + +++RDL   N LVR++ +++++DF L+                              
Sbjct: 126 SMNIIHRDLNSHNCLVRENKNVVVADFGLA------------------------------ 155

Query: 511 QPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR-SELGLPSSTLPELVAEPTAARSMSF 569
                      +           +  KK  RK R + +G P    PE             
Sbjct: 156 ----------RLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPE------------- 192

Query: 570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP 629
                     +I G  +   VD ++FGI L E++           R   F +  +     
Sbjct: 193 ----------MINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR 242

Query: 630 DSP 632
             P
Sbjct: 243 YCP 245

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 84.8 bits (210), Expect = 8e-18
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 19/169 (11%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRC--------YFAMKV--MDKASLASRKKLTRAQTE 381
            ++L       + G +Y +  +ST           F++K+   D      +    RA   
Sbjct: 43  QWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKP 102

Query: 382 REI-----LQLLDHPFLPTLYTH-FETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAA 435
            ++     L       +PT        D++  LV+    G  L +     P    SE + 
Sbjct: 103 LQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSV 161

Query: 436 RFYAAEVLLALEYLHMLGVVYRDLKPENVLV--RDDGHIMLSDFDLSLR 482
              A  +L ALE+LH    V+ ++  EN+ V   D   + L+ +  + R
Sbjct: 162 LQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFR 210

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 25/174 (14%)

Query: 335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL--LDHPF 392
           LL+ +G G  G V+           A+K+       S         E E+     L H  
Sbjct: 12  LLECVGKGRYGEVWRGSWQGE--NVAVKIFSSRDEKS------WFRETELYNTVMLRHEN 63

Query: 393 LPTLYTHFETDRFS----CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
           +        T R S     L+  Y   G L+   Q          +       +   L +
Sbjct: 64  ILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTT---LDTVSCLRIVLSIASGLAH 120

Query: 449 LHML--------GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
           LH+          + +RDLK +N+LV+ +G   ++D  L++  + S   +   +
Sbjct: 121 LHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGN 174

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 9/157 (5%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
                 L +L     G ++            +KV+     ++RK       E   L++  
Sbjct: 9   FKQLNFLTKLNENHSGELWKGRWQGNDI--VVKVLKVRDWSTRK-SRDFNEECPRLRIFS 65

Query: 390 HPFLPTLY---THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
           HP +  +              L+  + P G L+ +          +  A  +A ++   +
Sbjct: 66  HPNVLPVLGACQSPPAPHP-TLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGM 124

Query: 447 EYLHMLG--VVYRDLKPENVLVRDDGHIMLSDFDLSL 481
            +LH L   +    L   +V++ +D    +S  D+  
Sbjct: 125 AFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKF 161

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 59.9 bits (146), Expect = 5e-10
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 566 SMSFVGTHEYLAPEIIKGEGHGS---AVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV 622
           S   +    ++APE ++ +   +   + D W+F + L EL+  + PF    N      V 
Sbjct: 165 SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVA 224

Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
            + LR    P  S     L++  + ++P  R
Sbjct: 225 LEGLRPTIPPGISPHVSKLMKICMNEDPAKR 255

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 26/163 (15%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
               + +++G G  G+V+ +E   +    A+K++ +      +++     E  I++ L H
Sbjct: 37  CDLNIKEKIGAGSFGTVHRAEWHGSDV--AVKILMEQDF-HAERVNEFLREVAIMKRLRH 93

Query: 391 P----FL------PTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYA 439
           P    F+      P L           +V EY   G L+  L +    +   E      A
Sbjct: 94  PNIVLFMGAVTQPPNL----------SIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMA 143

Query: 440 AEVLLALEYLHMLG--VVYRDLKPENVLVRDDGHIMLSDFDLS 480
            +V   + YLH     +V+R+LK  N+LV     + + DF LS
Sbjct: 144 YDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLS 186

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 66.2 bits (162), Expect = 7e-12
 Identities = 24/92 (26%), Positives = 38/92 (41%)

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           T   S S  GT E++APE+++ E      D ++FG+ L EL   + P+        +  V
Sbjct: 192 TFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAV 251

Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
             +  R       +     +I G    EP  R
Sbjct: 252 GFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKR 283

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 82.5 bits (204), Expect = 4e-17
 Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 25/174 (14%)

Query: 335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL--LDHPF 392
           L + +G G  G V+  +        A+K+       S         E EI Q   L H  
Sbjct: 46  LQESIGKGRFGEVWRGKWRGE--EVAVKIFSSREERS------WFREAEIYQTVMLRHEN 97

Query: 393 LPTLYTHFETDRFS----CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
           +         D  +     LV +Y   G L     R      +       A      L +
Sbjct: 98  ILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT---VTVEGMIKLALSTASGLAH 154

Query: 449 LHM--------LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
           LHM          + +RDLK +N+LV+ +G   ++D  L++R   +   I  + 
Sbjct: 155 LHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAP 208

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 81.6 bits (202), Expect = 5e-17
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 13/157 (8%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH- 390
           H+++ +R+G G  G ++           A+K   +     R    + + E    +LL   
Sbjct: 11  HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPR-----RSDAPQLRDEYRTYKLLAGC 65

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
             +P +Y   +    + LV++   G  L  L     G+ FS       A ++L  ++ +H
Sbjct: 66  TGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIH 123

Query: 451 MLGVVYRDLKPENVLV-----RDDGHIMLSDFDLSLR 482
              +VYRD+KP+N L+     ++   I + DF +   
Sbjct: 124 EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF 160

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 81.3 bits (201), Expect = 8e-17
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 25/174 (14%)

Query: 335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL--LDHPF 392
           ++K++G G  G V++ +        A+KV      AS  +      E EI Q   + H  
Sbjct: 41  MVKQIGKGRYGEVWMGKWRGE--KVAVKVFFTTEEASWFR------ETEIYQTVLMRHEN 92

Query: 393 LPTLYTHFETDRFS----CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
           +            S     L+ +Y   G L+   +          +    A   +  L +
Sbjct: 93  ILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTT---LDAKSMLKLAYSSVSGLCH 149

Query: 449 LHML--------GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
           LH           + +RDLK +N+LV+ +G   ++D  L+++       +    
Sbjct: 150 LHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPP 203

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 26/180 (14%)

Query: 311 NDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA 370
           + PR  +  +I  ++  +      + + +G G  G VY           A++++D     
Sbjct: 13  SFPRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHGE---VAIRLIDIERD- 68

Query: 371 SRKKLTRAQTEREILQLLDHP----FL------PTLYTHFETDRFSCLVMEYCPGGDLHT 420
           +  +L   + E    +   H     F+      P L           ++   C G  L++
Sbjct: 69  NEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHL----------AIITSLCKGRTLYS 118

Query: 421 LRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +  R           R  A E++  + YLH  G++++DLK +NV   D+G ++++DF L 
Sbjct: 119 V-VRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFY-DNGKVVITDFGLF 176

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 567 MSFVGTHEYLAPEIIKGEGHGS---------AVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
               G   +LAPEII+     +           D +  G   +EL   + PFK     A 
Sbjct: 192 RIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAI 251

Query: 618 LFNVVGQQLRFPDSPAT-SYASRDLIRGLLVKEPQHR 653
           ++  +G  ++   S         D++      E + R
Sbjct: 252 IW-QMGTGMKPNLSQIGMGKEISDILLFCWAFEQEER 287

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 80.7 bits (199), Expect = 2e-16
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 27/190 (14%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL-- 387
           + + +LL+ +G G  G+VY   L       A+KV   A+  +         E+ I ++  
Sbjct: 12  LDNLKLLELIGRGRYGAVYKGSLDER--PVAVKVFSFANRQN------FINEKNIYRVPL 63

Query: 388 LDHPFLPTLYTHFETDRFS-----CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEV 442
           ++H  +       E           LVMEY P G L               ++   A  V
Sbjct: 64  MEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHT---SDWVSSCRLAHSV 120

Query: 443 LLALEYLHM---------LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS 493
              L YLH            + +RDL   NVLV++DG  ++SDF LS+R   +  +    
Sbjct: 121 TRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGE 180

Query: 494 SLDSDPSRRG 503
             ++  S  G
Sbjct: 181 EDNAAISEVG 190

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 14/161 (8%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRA----QTEREILQ 386
           +     K++G G  G V+   L   +   A+K +         ++       Q E  I+ 
Sbjct: 19  NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78

Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
            L+HP +  LY     +    +VME+ P GDL+     +               ++ L +
Sbjct: 79  NLNHPNIVKLYG-LMHNPP-RMVMEFVPCGDLYHRLLDKAHP-IKWSVKLRLMLDIALGI 135

Query: 447 EYLHMLG--VVYRDLKPENVLV-----RDDGHIMLSDFDLS 480
           EY+      +V+RDL+  N+ +            ++DF LS
Sbjct: 136 EYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS 176

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 566 SMSFVGTHEYLAPEIIKGEG--HGSAVDWWTFGIFLHELLYGKTPFKG--SGNRATLFNV 621
               +G  +++APE I  E   +    D ++F + L+ +L G+ PF     G    +  +
Sbjct: 183 VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMI 242

Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
             + LR           R++I      +P+ R
Sbjct: 243 REEGLRPTIPEDCPPRLRNVIELCWSGDPKKR 274

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 13/155 (8%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH- 390
           +FR+ K++GCG+ G + L +   T  Y A+K+    S A +  L     E    + L   
Sbjct: 10  NFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHL-----EYRFYKQLGSG 64

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
             +P +Y      +++ +V+E   G  L  L      + FS       A +++  +EY+H
Sbjct: 65  DGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVH 122

Query: 451 MLGVVYRDLKPENVLVRDDGH-----IMLSDFDLS 480
              ++YRD+KPEN L+   G+     I + DF L+
Sbjct: 123 SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALA 157

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 79.4 bits (196), Expect = 3e-16
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 27/180 (15%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL--L 388
              +LL+    G  G V+ ++L +   Y A+K+       S       Q E E+  L  +
Sbjct: 24  MPLQLLEVKARGRFGCVWKAQLLNE--YVAVKIFPIQDKQS------WQNEYEVYSLPGM 75

Query: 389 DHPFLPTLYTHFETDRFS----CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 444
            H  +       +          L+  +   G L    +       S       A  +  
Sbjct: 76  KHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANV---VSWNELCHIAETMAR 132

Query: 445 ALEYLHM----------LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
            L YLH             + +RD+K +NVL++++    ++DF L+L+     +   T  
Sbjct: 133 GLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHG 192

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 78.8 bits (195), Expect = 5e-16
 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 10/151 (6%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKK-LTRAQTEREILQLLDHP 391
           + L + LG G +  V+L+         A+KV+ +A LA       R + E +    L+HP
Sbjct: 14  YELGEILGFGGMSEVHLARDLRDHRDVAVKVL-RADLARDPSFYLRFRREAQNAAALNHP 72

Query: 392 FLPTLY----THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLAL 446
            +  +Y              +VMEY  G  L   +    P    +   A    A+   AL
Sbjct: 73  AIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIADACQAL 129

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
            + H  G+++RD+KP N+++     + + DF
Sbjct: 130 NFSHQNGIIHRDVKPANIMISATNAVKVMDF 160

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 559 AEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           +  +  ++ + +GT +YL+PE  +G+   +  D ++ G  L+E+L G+ PF G    +  
Sbjct: 169 SGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVA 228

Query: 619 FNVVGQQLRFPDS--PATSYASRDLIRGLLVKEPQHR 653
           +  V +    P +     S     ++   L K P++R
Sbjct: 229 YQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENR 265

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 78.0 bits (193), Expect = 8e-16
 Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 11/154 (7%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M  +  + ++G G  G V+      T    A+K   K   +    + +    REI  L+ 
Sbjct: 2   MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIK---KFLESEDDPVIKKIALREIRMLKQ 58

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ--RQPGKHFSEYAARFYAAEVLLA 445
           L HP L  L   F   R   LV EYC     HT+     +  +   E+  +    + L A
Sbjct: 59  LKHPNLVNLLEVFRRKRRLHLVFEYCD----HTVLHELDRYQRGVPEHLVKSITWQTLQA 114

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
           + + H    ++RD+KPEN+L+     I L DF  
Sbjct: 115 VNFCHKHNCIHRDVKPENILITKHSVIKLCDFGF 148

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 35/156 (22%), Positives = 53/156 (33%), Gaps = 42/156 (26%)

Query: 572 THE-----YLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVV 622
             E     Y +PE++ G+   G  VD W  G    ELL G   + G  +   L      +
Sbjct: 160 DDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTL 219

Query: 623 G----------------QQLRFPDS----------PATSYASRDLIRGLLVKEPQHRLGV 656
           G                  ++ PD           P  SY +  L++G L  +P  RL  
Sbjct: 220 GDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERL-- 277

Query: 657 KRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAE 692
                ++  HP+FE +           E  +P E  
Sbjct: 278 --TCEQLLHHPYFENIREI---EDLAKEHDKPAENL 308

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 77.6 bits (192), Expect = 9e-16
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 6/153 (3%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M +F+ ++++G G  G VY +    T    A+K   K  L +  +   +   REI  L+ 
Sbjct: 2   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALK---KIRLDTETEGVPSTAIREISLLKE 58

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           L+HP +  L     T+    LV E+    DL                 + Y  ++L  L 
Sbjct: 59  LNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLA 117

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           + H   V++RDLKP+N+L+  +G I L+DF L+
Sbjct: 118 FCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 78.7 bits (194), Expect = 9e-16
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 21/170 (12%)

Query: 332 HFRLLKRLGCGDIGSVYL-SELSSTRCYFAMKVMDKASLASRKKL-------TRAQTERE 383
            +++   +G G  G +YL    SS         + K   +    L        RA    +
Sbjct: 36  AWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQ 95

Query: 384 I-----LQLLDHPFLPTLY----THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYA 434
           I      + L +  +P  +           +  ++M+   G DL  + +    K FS   
Sbjct: 96  IQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN-AKRFSRKT 153

Query: 435 ARFYAAEVLLALEYLHMLGVVYRDLKPENVLV--RDDGHIMLSDFDLSLR 482
               +  +L  LEY+H    V+ D+K  N+L+  ++   + L D+ L+ R
Sbjct: 154 VLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYR 203

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 19/156 (12%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQ- 386
              ++L+++LG G    V+ +   +      +K         +KK      +REI  L+ 
Sbjct: 35  QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVK---ILKPVKKKK-----IKREIKILEN 86

Query: 387 LLDHPFLPTLY--THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 444
           L   P + TL         R   LV E+    D   L Q       ++Y  RFY  E+L 
Sbjct: 87  LRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEILK 141

Query: 445 ALEYLHMLGVVYRDLKPENVLV-RDDGHIMLSDFDL 479
           AL+Y H +G+++RD+KP NV++  +   + L D+ L
Sbjct: 142 ALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGL 177

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 31/140 (22%), Positives = 47/140 (33%), Gaps = 41/140 (29%)

Query: 570 VGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTP-FKGSGNRATL---FNVVG- 623
           V +  +  PE++        ++D W+ G  L  +++ K P F G  N   L     V+G 
Sbjct: 191 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 250

Query: 624 -------------------QQL---------RFPDSPATSYASR---DLIRGLLVKEPQH 652
                                L         RF  S      S    D +  LL  + Q 
Sbjct: 251 EDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQS 310

Query: 653 RLGVKRGATEIKQHPFFEGV 672
           RL  +    E  +HP+F  V
Sbjct: 311 RLTAR----EAMEHPYFYTV 326

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 24/160 (15%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
                + +R+G G  G+VY  +        A+K+++  +  + ++L   + E  +L+   
Sbjct: 23  DGQITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVTAP-TPQQLQAFKNEVGVLRKTR 78

Query: 390 HP----FL-----PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAA 440
           H     F+     P L           +V ++C G  L+        K F        A 
Sbjct: 79  HVNILLFMGYSTAPQL----------AIVTQWCEGSSLYHHLHASETK-FEMKKLIDIAR 127

Query: 441 EVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +    ++YLH   +++RDLK  N+ + +D  + + DF L+
Sbjct: 128 QTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLA 167

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 563 AARSMSFVGTHEYLAPEIIKGEGHG---SAVDWWTFGIFLHELLYGKTPFKGSGNRATLF 619
           + +     G+  ++APE+I+ +         D + FGI L+EL+ G+ P+    NR  + 
Sbjct: 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQII 235

Query: 620 NVVGQQLRFPDSP 632
            +VG+    PD  
Sbjct: 236 EMVGRGSLSPDLS 248

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 14/158 (8%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ 386
            H + L++LG G+ GSV +        +T    A+K +  ++    +   R   E EIL+
Sbjct: 41  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILK 97

Query: 387 LLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEV 442
            L H  +                 L+MEY P G L   L++ +            Y +++
Sbjct: 98  SLQHDNIVKYKGVCYSAGRRNL-KLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQI 154

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +EYL     ++RDL   N+LV ++  + + DF L+
Sbjct: 155 CKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 192

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 76.5 bits (189), Expect = 3e-15
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 27/165 (16%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTE-------- 381
            S F+ L++LG G   +VY     +T  Y A+K +            +  +E        
Sbjct: 4   SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEV------------KLDSEEGTPSTAI 51

Query: 382 REI--LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTL----RQRQPGKHFSEYAA 435
           REI  ++ L H  +  LY    T+    LV E+    DL             +       
Sbjct: 52  REISLMKELKHENIVRLYDVIHTENKLTLVFEFMDN-DLKKYMDSRTVGNTPRGLELNLV 110

Query: 436 RFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +++  ++L  L + H   +++RDLKP+N+L+   G + L DF L+
Sbjct: 111 KYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLA 155

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 31/166 (18%), Positives = 50/166 (30%), Gaps = 55/166 (33%)

Query: 572 THE-----YLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVV 622
           + E     Y AP+++ G     +++D W+ G  L E++ GK  F G+ +   L   F+++
Sbjct: 166 SSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIM 225

Query: 623 G----------QQL-----RFPDSPATSYASR--------------DLIRGLLVKEPQHR 653
           G           +L          P                     D + GLL   P  R
Sbjct: 226 GTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMR 285

Query: 654 LGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGA 699
           L     A +   HP+F              E               
Sbjct: 286 L----SAKQALHHPWFA-------------EYYHHASMGGSRSHHH 314

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 76.1 bits (188), Expect = 5e-15
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 24/161 (14%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTE-------- 381
           M  +  L +LG G   +VY  +   T    A+K +            R + E        
Sbjct: 1   METYIKLDKLGEGTYATVYKGKSKLTDNLVALKEI------------RLEHEEGAPCTAI 48

Query: 382 REI--LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYA 439
           RE+  L+ L H  + TL+    T++   LV EY    DL        G   + +  + + 
Sbjct: 49  REVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDK-DLKQY-LDDCGNIINMHNVKLFL 106

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            ++L  L Y H   V++RDLKP+N+L+ + G + L+DF L+
Sbjct: 107 FQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLA 147

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 44.5 bits (106), Expect = 8e-05
 Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 38/132 (28%)

Query: 572 THE-----YLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVV 622
            +E     Y  P+I+ G     + +D W  G   +E+  G+  F GS     L   F ++
Sbjct: 158 DNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRIL 217

Query: 623 G----------------QQLRFPDSPATSYASR---------DLIRGLLVKEPQHRLGVK 657
           G                +   +P   A +  S          DL+  LL  E ++R+   
Sbjct: 218 GTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRI--- 274

Query: 658 RGATEIKQHPFF 669
             A +  +HPFF
Sbjct: 275 -SAEDAMKHPFF 285

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 75.0 bits (185), Expect = 6e-15
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 14/158 (8%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ 386
            H + L++LG G+ GSV +        +T    A+K +  ++    +   R   E EIL+
Sbjct: 10  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER---EIEILK 66

Query: 387 LLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEV 442
            L H  +                 L+MEY P G L   L++ +            Y +++
Sbjct: 67  SLQHDNIVKYKGVCYSAGRRNL-KLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQI 123

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +EYL     ++RDL   N+LV ++  + + DF L+
Sbjct: 124 CKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 161

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 75.9 bits (187), Expect = 6e-15
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 20/168 (11%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVM-----DKASLASRKK-LTRAQTEREI- 384
            + L K++G G  G +YL+  ++     A  V+     +   L S  K   R   +  I 
Sbjct: 38  QWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIK 97

Query: 385 ----LQLLDHPFLPTLY----THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAAR 436
                + LD+  +P  Y    T F+   +  +VME   G DL  +  +     F +    
Sbjct: 98  KWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQN--GTFKKSTVL 154

Query: 437 FYAAEVLLALEYLHMLGVVYRDLKPENVLV--RDDGHIMLSDFDLSLR 482
                +L  LEY+H    V+ D+K  N+L+  ++   + L+D+ LS R
Sbjct: 155 QLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYR 202

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 76.6 bits (188), Expect = 7e-15
 Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 11/155 (7%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DH 390
            FRL +++G G  G +YL     T    A+K+ +      + K  +   E +I ++L   
Sbjct: 8   KFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENV-----KTKHPQLLYESKIYRILQGG 62

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
             +P +        ++ LVM+   G  L  L      +  S       A +++  +E++H
Sbjct: 63  TGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFC-SRKLSLKTVLMLADQMINRVEFVH 120

Query: 451 MLGVVYRDLKPENVLVRDDGH---IMLSDFDLSLR 482
               ++RD+KP+N L+        + + DF L+ +
Sbjct: 121 SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKK 155

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 75.3 bits (186), Expect = 8e-15
 Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 11/155 (7%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M  +  L  +G G  G V       T    A+K   K   +   K+ +    REI  L+ 
Sbjct: 24  MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIK---KFLESDDDKMVKKIAMREIKLLKQ 80

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQ--RQPGKHFSEYAARFYAAEVLLA 445
           L H  L  L    +  +   LV E+      HT+                + Y  +++  
Sbjct: 81  LRHENLVNLLEVCKKKKRWYLVFEFVD----HTILDDLELFPNGLDYQVVQKYLFQIING 136

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           + + H   +++RD+KPEN+LV   G + L DF  +
Sbjct: 137 IGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFA 171

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 32/157 (20%), Positives = 50/157 (31%), Gaps = 44/157 (28%)

Query: 572 THE-----YLAPEIIKGEGH-GSAVDWWTFG-IFLHELLYGKTPFKGSGNRATL---FNV 621
             E     Y APE++ G+   G AVD W  G +   E+  G+  F G  +   L      
Sbjct: 182 DDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVT-EMFMGEPLFPGDSDIDQLYHIMMC 240

Query: 622 VG----------------QQLRFPDS----------PATSYASRDLIRGLLVKEPQHRLG 655
           +G                  +R P+           P  S    DL +  L  +P  R  
Sbjct: 241 LGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRP- 299

Query: 656 VKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAE 692
                 E+  H FF+             E+   ++ +
Sbjct: 300 ---FCAELLHHDFFQMDG---FAERFSQELQLKVQKD 330

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 67/360 (18%), Positives = 114/360 (31%), Gaps = 83/360 (23%)

Query: 277 SAKTSISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLL 336
           S+  + +    +SG     + S   G   K H  + P     +     D  +    + + 
Sbjct: 2   SSHEAAAAQQHNSGTQHTVSGSQQEGQQRKQHHSSKPTAS--MPRPHSDWQIP-DRYEIR 58

Query: 337 KRLGCGDIGSVYLSELSSTRCYFAMK----VMDKASLASRKKLTRAQTEREI--LQLLDH 390
             +G G  G V  +     +   A+K    V +      R         REI  L  L+H
Sbjct: 59  HLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKR-------ILREIAILNRLNH 111

Query: 391 P--------FLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAE 441
                     +P     F+ + +  +V+E     D     R        +E   +     
Sbjct: 112 DHVVKVLDIVIPKDVEKFD-ELY--VVLEIA-DSDFKKLFRTPVY---LTELHIKTLLYN 164

Query: 442 VLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSR 501
           +L+ ++Y+H  G+++RDLKP N LV  D  + + DF L+                     
Sbjct: 165 LLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLA--------------------- 203

Query: 502 RGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP 561
                                       R         ++ P S      + +     + 
Sbjct: 204 ----------------------------RTVDYPENGNSQLPISPREDDMNLVTFPHTKN 235

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLF 619
              +    V T  Y APE+I  + +   A+D W+ G    ELL   K       +R  LF
Sbjct: 236 LKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLF 295

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 19/160 (11%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL----SSTRCYFAMKVM-DKASLASRKKLTRAQTEREIL 385
            + + ++ LG G  G V L         T    A+K +   A    R    +   E +IL
Sbjct: 31  RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQ---EIDIL 87

Query: 386 QLLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPG-KHFSEYAARFYAA 440
           + L H  +                 LVMEY P G L   L +   G      +A      
Sbjct: 88  RTLYHEHIIKYKGCCEDAGAASL-QLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQ----- 141

Query: 441 EVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++   + YLH    ++RDL   NVL+ +D  + + DF L+
Sbjct: 142 QICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLA 181

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 19/190 (10%)

Query: 298 SNITGSANKPHKGNDP-RWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTR 356
           SN   +  K +  +DP +   +LA   + G      +   K +G G  G V+ ++L  + 
Sbjct: 6   SNAPLNGVKLNPLDDPNKVIKVLASDGKTGEQREIAYTNCKVIGNGSFGVVFQAKLVESD 65

Query: 357 CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTL----YTHFETDRFSC--LVM 410
              A+K   K     R K  R   E +I++++ HP +  L    Y++ +        LV+
Sbjct: 66  -EVAIK---KVLQDKRFKN-R---ELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVL 117

Query: 411 EYCPGGDLHTL--RQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV-R 467
           EY P   ++       +  +       + Y  ++L +L Y+H +G+ +RD+KP+N+L+  
Sbjct: 118 EYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDP 176

Query: 468 DDGHIMLSDF 477
             G + L DF
Sbjct: 177 PSGVLKLIDF 186

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 39/151 (25%), Positives = 54/151 (35%), Gaps = 40/151 (26%)

Query: 575 YLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVVG------- 623
           Y APE+I G  +  + +D W+ G  + EL+ G+  F G      L     V+G       
Sbjct: 207 YRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQI 266

Query: 624 -------QQLRFPDSPATSYASR----------DLIRGLLVKEPQHRLGVKRGATEIKQH 666
                   + +FP      ++            DLI  LL   P  RL     A E   H
Sbjct: 267 KTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARL----TAIEALCH 322

Query: 667 PFFEGVNWALIRCSTPPEVPRPMEAELPGKF 697
           PFF+ +           E   P   ELP  F
Sbjct: 323 PFFDELR--------TGEARMPNGRELPPLF 345

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 15/159 (9%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKV-----MDKASLASRKKLTRAQTEREIL 385
              + ++ LG G  G V L            +V       ++       L +   E EIL
Sbjct: 21  RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKK---EIEIL 77

Query: 386 QLLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAE 441
           + L H  +       T    +    L+ME+ P G L   L + +     +      YA +
Sbjct: 78  RNLYHENIVKYKGICTEDGGNGI-KLIMEFLPSGSLKEYLPKNKN--KINLKQQLKYAVQ 134

Query: 442 VLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +   ++YL     V+RDL   NVLV  +  + + DF L+
Sbjct: 135 ICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLT 173

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 37/173 (21%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRA-QTEREILQLL 388
            +   L + +G G  G VY +         A+K           +     + E ++  +L
Sbjct: 6   FAELTLEEIIGIGGFGKVYRAFWIGDEV--AVKAARHDPDEDISQTIENVRQEAKLFAML 63

Query: 389 DHP----FL------PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFY 438
            HP            P L          CLVME+  GG L+ +     GK         +
Sbjct: 64  KHPNIIALRGVCLKEPNL----------CLVMEFARGGPLNRVLS---GKRIPPDILVNW 110

Query: 439 AAEVLLALEYLHMLG---VVYRDLKPENVLVRDDGHIM--------LSDFDLS 480
           A ++   + YLH      +++RDLK  N+L+               ++DF L+
Sbjct: 111 AVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA 163

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 25/88 (28%), Positives = 39/88 (44%)

Query: 566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
            MS  G + ++APE+I+        D W++G+ L ELL G+ PF+G    A  + V   +
Sbjct: 171 KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNK 230

Query: 626 LRFPDSPATSYASRDLIRGLLVKEPQHR 653
           L  P           L+      +P  R
Sbjct: 231 LALPIPSTCPEPFAKLMEDCWNPDPHSR 258

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 35/169 (20%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMK-VMDKASLASRKKLTRAQTEREI--LQ 386
           M  F++ +  G G  G+V L +  ST    A+K V+      +R         + +  L 
Sbjct: 22  MDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNR-------ELQIMQDLA 74

Query: 387 LLDHP--------FLPTLYTHFETDRFSCLVMEYCPGGDLH-------TLRQRQPGKHFS 431
           +L HP        F          D +  +VMEY P   LH         +   P     
Sbjct: 75  VLHHPNIVQLQSYFYTLGERDRR-DIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILI- 131

Query: 432 EYAARFYAAEVLLALEYLHM--LGVVYRDLKPENVLV-RDDGHIMLSDF 477
               + +  +++ ++  LH+  + V +RD+KP NVLV   DG + L DF
Sbjct: 132 ----KVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDF 176

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 67/371 (18%), Positives = 113/371 (30%), Gaps = 94/371 (25%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMK----VMDKASLASRKKLTRAQTEREI-- 384
            ++ +   +G G  G VYL+   +T    A+K    + +      R         REI  
Sbjct: 26  DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKR-------ILREITI 78

Query: 385 LQLLDHP--------FLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAA 435
           L  L            +P     F+ + +  +V+E     DL    +        +E   
Sbjct: 79  LNRLKSDYIIRLYDLIIPDDLLKFD-ELY--IVLEIA-DSDLKKLFKTPIF---LTEEHI 131

Query: 436 RFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSL 495
           +     +LL   ++H  G+++RDLKP N L+  D  + + DF L+               
Sbjct: 132 KTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLA--------------- 176

Query: 496 DSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLP 555
                                             R    +          E   P     
Sbjct: 177 ----------------------------------RTINSEKDTNIVNDLEENEEPGPHNK 202

Query: 556 ELVAEPTAARSMSFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGS-G 613
            L  + T     S V T  Y APE+I  + +   ++D W+ G    ELL           
Sbjct: 203 NLKKQLT-----SHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPT 257

Query: 614 NRATLFNVVGQQLRFPDSPATSYASRD------LIRGLL---VKEPQHRLGVKRGATEIK 664
           NR  LF         PD  +     +       +I  ++    ++    +        IK
Sbjct: 258 NRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIK 317

Query: 665 QHPFFEGVNWA 675
             P  + +N  
Sbjct: 318 LFPHRKPINLK 328

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 73.6 bits (181), Expect = 6e-14
 Identities = 43/209 (20%), Positives = 83/209 (39%), Gaps = 21/209 (10%)

Query: 282 ISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSH----FRLLK 337
           +S    ++  ++         +        D     +  + A  G          +   K
Sbjct: 1   MSGRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTK 60

Query: 338 RLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLY 397
            +G G  G VY ++L  +    A+K   K     R K  R   E +I++ LDH  +  L 
Sbjct: 61  VIGNGSFGVVYQAKLCDSGELVAIK---KVLQDKRFKN-R---ELQIMRKLDHCNIVRLR 113

Query: 398 THF------ETDRFSCLVMEYCPGGDLHTL--RQRQPGKHFSEYAARFYAAEVLLALEYL 449
             F      + + +  LV++Y P   ++ +     +  +       + Y  ++  +L Y+
Sbjct: 114 YFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYI 172

Query: 450 HMLGVVYRDLKPENVLV-RDDGHIMLSDF 477
           H  G+ +RD+KP+N+L+  D   + L DF
Sbjct: 173 HSFGICHRDIKPQNLLLDPDTAVLKLCDF 201

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 35/142 (24%), Positives = 45/142 (31%), Gaps = 34/142 (23%)

Query: 575 YLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVVG------- 623
           Y APE+I G     S++D W+ G  L ELL G+  F G      L     V+G       
Sbjct: 222 YRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQI 281

Query: 624 -------QQLRFPDSPATSYASR----------DLIRGLLVKEPQHRLGVKRGATEIKQH 666
                   + +FP   A  +              L   LL   P  RL       E   H
Sbjct: 282 REMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARL----TPLEACAH 337

Query: 667 PFFEGVNWALIRCSTPPEVPRP 688
            FF+           P     P
Sbjct: 338 SFFDE--LRDPNVKLPNGRDTP 357

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 14/158 (8%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ 386
            H + + +LG G+ GSV L        +T    A+K +  +    ++   R   E +IL+
Sbjct: 23  RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQR---EIQILK 79

Query: 387 LLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEV 442
            L   F+                 LVMEY P G L   L++ +            Y++++
Sbjct: 80  ALHSDFIVKYRGVSYGPGRQSL-RLVMEYLPSGCLRDFLQRHRA--RLDASRLLLYSSQI 136

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +EYL     V+RDL   N+LV  + H+ ++DF L+
Sbjct: 137 CKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 174

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 71.8 bits (177), Expect = 7e-14
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 7/153 (4%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M  +  L+++G G  G+V+ ++   T    A+K   +  L    +   +   REI  L+ 
Sbjct: 1   MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALK---RVRLDDDDEGVPSSALREICLLKE 57

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           L H  +  L+    +D+   LV E+C   DL        G        + +  ++L  L 
Sbjct: 58  LKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSCNGD-LDPEIVKSFLFQLLKGLG 115

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           + H   V++RDLKP+N+L+  +G + L++F L+
Sbjct: 116 FCHSRNVLHRDLKPQNLLINRNGELKLANFGLA 148

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 41.7 bits (99), Expect = 5e-04
 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 38/132 (28%)

Query: 572 THE-----YLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTP-FKGSGNRATL---FNV 621
           + E     Y  P+++ G     +++D W+ G    EL     P F G+     L   F +
Sbjct: 159 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRL 218

Query: 622 VG----------QQLR----FPDSPAT----------SYASRDLIRGLLVKEPQHRLGVK 657
           +G           +L     +P  PAT          +   RDL++ LL   P  R+   
Sbjct: 219 LGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRI--- 275

Query: 658 RGATEIKQHPFF 669
             A E  QHP+F
Sbjct: 276 -SAEEALQHPYF 286

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 72.7 bits (179), Expect = 8e-14
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 13/155 (8%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVM-DKASLASRKKLTRAQTEREILQLLD 389
               L +++G G+ G V+   L +     A+K   +      + K  +   E  IL+   
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQ---EARILKQYS 170

Query: 390 HPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLA 445
           HP +  L    T  +      +VME   GGD  T LR    G             +    
Sbjct: 171 HPNIVRLIGVCTQKQP---IYIVMELVQGGDFLTFLRTE--GARLRVKTLLQMVGDAAAG 225

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +EYL     ++RDL   N LV +   + +SDF +S
Sbjct: 226 MEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMS 260

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 71.0 bits (175), Expect = 1e-13
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 8/153 (5%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M  +  L+++G G  G VY ++ ++    FA+K   K  L    +   + T REI  L+ 
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQ-NNYGETFALK---KIRLEKEDEGIPSTTIREISILKE 56

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           L H  +  LY    T +   LV E+    DL  L     G       A+ +  ++L  + 
Sbjct: 57  LKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCEGG-LESVTAKSFLLQLLNGIA 114

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           Y H   V++RDLKP+N+L+  +G + ++DF L+
Sbjct: 115 YCHDRRVLHRDLKPQNLLINREGELKIADFGLA 147

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 44.0 bits (105), Expect = 9e-05
 Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 37/135 (27%)

Query: 572 THE-----YLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVV 622
           THE     Y AP+++ G     + +D W+ G    E++ G   F G      L   F ++
Sbjct: 158 THEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRIL 217

Query: 623 GQ---------------QLRFPDSPATSYAS---------RDLIRGLLVKEPQHRLGVKR 658
           G                   F       + S          DL+  +L  +P  R+    
Sbjct: 218 GTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRI---- 273

Query: 659 GATEIKQHPFFEGVN 673
            A +  +H +F+  N
Sbjct: 274 TAKQALEHAYFKENN 288

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 20/170 (11%)

Query: 326 GILG---MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRA---Q 379
           G LG    S +  +  +G G  G+VY +    +  + A+K      + +           
Sbjct: 1   GPLGSMATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALK---SVRVPNGGGGGGGLPIS 57

Query: 380 TEREI-----LQLLDHPFLPTLYTHFETDRFSC-----LVMEYCPGGDLHTLRQRQPGKH 429
           T RE+     L+  +HP +  L     T R        LV E+    DL T   + P   
Sbjct: 58  TVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPG 116

Query: 430 FSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
                 +    + L  L++LH   +V+RDLKPEN+LV   G + L+DF L
Sbjct: 117 LPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGL 166

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 36/129 (27%)

Query: 572 THE-----YLAPEIIKGEGHGSAVDWWTFG-IFLHELLYGKTPFKGSGNRATL---FNVV 622
           T       Y APE++    + + VD W+ G IF  E+   K  F G+     L   F+++
Sbjct: 177 TPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFA-EMFRRKPLFCGNSEADQLGKIFDLI 235

Query: 623 G-------------QQLRFPDSPATSYASR---------DLIRGLLVKEPQHRLGVKRGA 660
           G              +  FP        S           L+  +L   P  R+     A
Sbjct: 236 GLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRI----SA 291

Query: 661 TEIKQHPFF 669
               QH + 
Sbjct: 292 FRALQHSYL 300

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 71.5 bits (176), Expect = 2e-13
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 28/182 (15%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMK---VMDKASLASRKKLTRAQTEREI--L 385
           S F+L   LG G  G V  +    T    A+K     DK   A R       T REI  L
Sbjct: 11  SDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALR-------TLREIKIL 63

Query: 386 QLLDHP--------FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARF 437
           +   H           P  + +F  + +  ++ E     DLH +   Q     S+   ++
Sbjct: 64  KHFKHENIITIFNIQRPDSFENFN-EVY--IIQELM-QTDLHRVISTQM---LSDDHIQY 116

Query: 438 YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDS 497
           +  + L A++ LH   V++RDLKP N+L+  +  + + DF L+ R         +     
Sbjct: 117 FIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLA-RIIDESAADNSEPTGQ 175

Query: 498 DP 499
             
Sbjct: 176 QS 177

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 71.0 bits (175), Expect = 2e-13
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 8/153 (5%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           M  ++ L+++G G  G VY ++  S     A+K   +  L +  +   +   REI  L+ 
Sbjct: 20  MEKYQKLEKVGEGTYGVVYKAK-DSQGRIVALK---RIRLDAEDEGIPSTAIREISLLKE 75

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           L HP + +L     ++R   LV E+    DL  +          +   + Y  ++L  + 
Sbjct: 76  LHHPNIVSLIDVIHSERCLTLVFEFMEK-DLKKVLDENKTG-LQDSQIKIYLYQLLRGVA 133

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           + H   +++RDLKP+N+L+  DG + L+DF L+
Sbjct: 134 HCHQHRILHRDLKPQNLLINSDGALKLADFGLA 166

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 38/136 (27%)

Query: 572 THE-----YLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVV 622
           THE     Y AP+++ G     ++VD W+ G    E++ GK  F G  +   L   F+++
Sbjct: 177 THEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSIL 236

Query: 623 G----------------QQLRFPDSPATSYASR---------DLIRGLLVKEPQHRLGVK 657
           G                +Q  F       ++S          DL+  +L  +P  R+   
Sbjct: 237 GTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRI--- 293

Query: 658 RGATEIKQHPFFEGVN 673
             A +   HP+F+ ++
Sbjct: 294 -SARDAMNHPYFKDLD 308

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 30/165 (18%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMK----VMDKASLASRKKLTRAQTEREI-- 384
             +     +G G  GSV  +    +    A+K           A R         RE+  
Sbjct: 24  KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKR-------AYRELLL 76

Query: 385 LQLLDHP--------FLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAA 435
           L+ + H         F P        D +  LVM +    DL   +  +   +       
Sbjct: 77  LKHMQHENVIGLLDVFTPASSLRNFYDFY--LVMPFM-QTDLQKIMGLKFSEEKI----- 128

Query: 436 RFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++   ++L  L+Y+H  GVV+RDLKP N+ V +D  + + DF L+
Sbjct: 129 QYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLA 173

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 45/146 (30%)

Query: 564 ARSMS-----FVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
           AR        +V T  Y APE+I    H    VD W+ G  + E+L GKT FKG      
Sbjct: 173 ARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ 232

Query: 618 L---FNVVG-------------------QQLR----------FPDSPATSYASRDLIRGL 645
           L     V G                   Q L           FP   A+  A  DL+  +
Sbjct: 233 LTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPR--ASPQA-ADLLEKM 289

Query: 646 LVKEPQHRLGVKRGATEIKQHPFFEG 671
           L  +   RL       +   HPFFE 
Sbjct: 290 LELDVDKRLTA----AQALTHPFFEP 311

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 27/164 (16%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMK----VMDKASLASRKKLTRAQTEREI-- 384
           + +R L+ +G G  G+V  +    T    A+K           A R         RE+  
Sbjct: 25  AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKR-------AYRELRL 77

Query: 385 LQLLDHP--------FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAAR 436
           L+ + H         F P       TD +  LVM +  G DL  L + +      E   +
Sbjct: 78  LKHMRHENVIGLLDVFTPDETLDDFTDFY--LVMPFM-GTDLGKLMKHEK---LGEDRIQ 131

Query: 437 FYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           F   ++L  L Y+H  G+++RDLKP N+ V +D  + + DF L+
Sbjct: 132 FLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLA 175

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 36/143 (25%), Positives = 52/143 (36%), Gaps = 39/143 (27%)

Query: 564 ARSMS-----FVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
           AR        +V T  Y APE+I         VD W+ G  + E++ GKT FKGS +   
Sbjct: 175 ARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQ 234

Query: 618 L---FNVVGQQ-----------------LRFPDSPATSYAS---------RDLIRGLLVK 648
           L     V G                      P+     +AS          +L+  +LV 
Sbjct: 235 LKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVL 294

Query: 649 EPQHRLGVKRGATEIKQHPFFEG 671
           + + R+       E   HP+FE 
Sbjct: 295 DAEQRVTA----GEALAHPYFES 313

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 10/155 (6%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKL---TRAQTEREI-- 384
              +  L  LG G   +VY +   +T    A+K   K  L  R +          REI  
Sbjct: 9   AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIK---KIKLGHRSEAKDGINRTALREIKL 65

Query: 385 LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 444
           LQ L HP +  L   F       LV ++    DL  +  +      +    + Y    L 
Sbjct: 66  LQELSHPNIIGLLDAFGHKSNISLVFDFMET-DLEVI-IKDNSLVLTPSHIKAYMLMTLQ 123

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
            LEYLH   +++RDLKP N+L+ ++G + L+DF L
Sbjct: 124 GLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGL 158

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 41/188 (21%), Positives = 59/188 (31%), Gaps = 43/188 (22%)

Query: 572 THE-----YLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVV 622
           TH+     Y APE++ G    G  VD W  G  L ELL       G  +   L   F  +
Sbjct: 170 THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETL 229

Query: 623 G----------QQLR----FPDSPATSYASR---------DLIRGLLVKEPQHRLGVKRG 659
           G            L     F   P                DLI+GL +  P  R+     
Sbjct: 230 GTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARI----T 285

Query: 660 ATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGAVDPVGVSSSSSKKIVGTDMK 719
           AT+  +  +F          +   ++PRP     P +          +   K+    +  
Sbjct: 286 ATQALKMKYF----SNRPGPTPGCQLPRP---NCPVETLKEQSNPALAIKRKRTEALEQG 338

Query: 720 SGGKYLDF 727
              K L F
Sbjct: 339 GLPKKLIF 346

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 19/160 (11%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQLL 388
             ++ L  +G G  GSV  +  + T    A+K   K S   +  +   +T RE+  L+ +
Sbjct: 29  ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVK---KLSRPFQSIIHAKRTYRELRLLKHM 85

Query: 389 DHP--------FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAA 440
            H         F P        D +  LV     G DL+ + + Q     ++   +F   
Sbjct: 86  KHENVIGLLDVFTPARSLEEFNDVY--LVTHLM-GADLNNIVKCQK---LTDDHVQFLIY 139

Query: 441 EVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++L  L+Y+H   +++RDLKP N+ V +D  + + DF L+
Sbjct: 140 QILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 179

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 36/145 (24%), Positives = 51/145 (35%), Gaps = 45/145 (31%)

Query: 564 ARSMS-----FVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
           AR  +     +V T  Y APEI+    H    VD W+ G  + ELL G+T F G+ +   
Sbjct: 179 ARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 238

Query: 618 L---FNVVG-------------------QQLR----------FPDSPATSYASRDLIRGL 645
           L     +VG                   Q L           F    A   A  DL+  +
Sbjct: 239 LKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIG--ANPLA-VDLLEKM 295

Query: 646 LVKEPQHRLGVKRGATEIKQHPFFE 670
           LV +   R+       +   H +F 
Sbjct: 296 LVLDSDKRITA----AQALAHAYFA 316

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 6/151 (3%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           +   +  +LG G  G VY           A+K + K      ++  +   E  +++ + H
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLK---EAAVMKEIKH 68

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P L  L      +    ++ E+   G+L   LR+    +  S     + A ++  A+EYL
Sbjct: 69  PNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN-RQEVSAVVLLYMATQISSAMEYL 127

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                ++RDL   N LV ++  + ++DF LS
Sbjct: 128 EKKNFIHRDLAARNCLVGENHLVKVADFGLS 158

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 6/151 (3%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           +   +  +LG G  G VY           A+K + K      ++  +   E  +++ + H
Sbjct: 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLK---EAAVMKEIKH 275

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P L  L      +    ++ E+   G+L   LR+    +  S     + A ++  A+EYL
Sbjct: 276 PNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN-RQEVSAVVLLYMATQISSAMEYL 334

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                ++R+L   N LV ++  + ++DF LS
Sbjct: 335 EKKNFIHRNLAARNCLVGENHLVKVADFGLS 365

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 10/152 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
              +LL+ +G G+ G V L +    +   A+K + K   A+ +       E  ++  L H
Sbjct: 21  KELKLLQTIGKGEFGDVMLGDYRGNKV--AVKCI-KND-ATAQAFLA---EASVMTQLRH 73

Query: 391 PFLPTLY-THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEY 448
             L  L     E      +V EY   G L   LR R             ++ +V  A+EY
Sbjct: 74  SNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEY 132

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           L     V+RDL   NVLV +D    +SDF L+
Sbjct: 133 LEGNNFVHRDLAARNVLVSEDNVAKVSDFGLT 164

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 69.2 bits (170), Expect = 7e-13
 Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKV-----MDKASLASRKKLTRAQTEREIL 385
           + F+ +K LG G  G+VY            + V      +  S  + K++     E  ++
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD---EAYVM 71

Query: 386 QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLL 444
             +D+P +  L     T     L+ +  P G L   +R+ +   +        +  ++  
Sbjct: 72  ASVDNPHVCRLLGICLTSTV-QLITQLMPFGCLLDYVREHKD--NIGSQYLLNWCVQIAK 128

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            + YL    +V+RDL   NVLV+   H+ ++DF L+
Sbjct: 129 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLA 164

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 70.1 bits (172), Expect = 8e-13
 Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 14/154 (9%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
              +LL+ +G G+ G V L +    +   A+K + K   A+ +       E  ++  L H
Sbjct: 193 KELKLLQTIGKGEFGDVMLGDYRGNKV--AVKCI-KND-ATAQAFLA---EASVMTQLRH 245

Query: 391 PFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLAL 446
             L  L       +      +V EY   G L   LR R             ++ +V  A+
Sbjct: 246 SNLVQLLGVIVEEKGG--LYIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAM 302

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           EYL     V+RDL   NVLV +D    +SDF L+
Sbjct: 303 EYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLT 336

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 68.4 bits (168), Expect = 9e-13
 Identities = 43/154 (27%), Positives = 61/154 (39%), Gaps = 7/154 (4%)

Query: 331 SHFRLLKRLGCGDIGSVY---LSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
              RLL++LG G  G V        S      A+K +    L+  + +     E   +  
Sbjct: 18  KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 77

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLAL 446
           LDH  L  LY    T     +V E  P G L   LR+ Q   HF       YA +V   +
Sbjct: 78  LDHRNLIRLYGVVLTPPM-KMVTELAPLGSLLDRLRKHQG--HFLLGTLSRYAVQVAEGM 134

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            YL     ++RDL   N+L+     + + DF L 
Sbjct: 135 GYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM 168

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 68.9 bits (169), Expect = 9e-13
 Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 18/162 (11%)

Query: 334 RLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            L + LG G+ GSV  ++L     S  +   A+K++ KA + +   +     E   ++  
Sbjct: 26  TLGRMLGKGEFGSVREAQLKQEDGSFVKV--AVKML-KADIIASSDIEEFLREAACMKEF 82

Query: 389 DHPFLPTLY------THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAAR---FY 438
           DHP +  L                 +++ +   GDLH  L   + G++      +    +
Sbjct: 83  DHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRF 142

Query: 439 AAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             ++   +EYL     ++RDL   N ++ +D  + ++DF LS
Sbjct: 143 MVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLS 184

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 68.8 bits (169), Expect = 1e-12
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 27/163 (16%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMK---VMDKASLASRKKLTRAQTEREI--L 385
             +  L  +G G  G V  +  +  +   A+K     +  +   R       T REI  L
Sbjct: 27  PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQR-------TLREIKIL 79

Query: 386 QLLDHP--------FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARF 437
               H                  + D +  +V +     DL+ L + Q     S     +
Sbjct: 80  LRFRHENIIGINDIIRAPTIEQMK-DVY--IVQDLM-ETDLYKLLKTQH---LSNDHICY 132

Query: 438 YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +  ++L  L+Y+H   V++RDLKP N+L+     + + DF L+
Sbjct: 133 FLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA 175

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELS-STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
              RL  +LG G  G V++   + +TR   A+K + K    S +   +   E ++++ L 
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRV--AIKTL-KPGTMSPEAFLQ---EAQVMKKLR 237

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEY 448
           H  L  LY     +    +V EY   G L   L+    GK+         AA++   + Y
Sbjct: 238 HEKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAY 295

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +  +  V+RDL+  N+LV ++    ++DF L+
Sbjct: 296 VERMNYVHRDLRAANILVGENLVCKVADFGLA 327

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 382 REI-----LQLLDHPFLPTLYTHFETDRFSC-----LVMEYCPGGDLHTLRQRQPGKHFS 431
           RE+     L+  +HP +  L+      R        LV E+    DL T   + P     
Sbjct: 60  REVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVP 118

Query: 432 EYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
               +    ++L  L++LH   VV+RDLKP+N+LV   G I L+DF L
Sbjct: 119 TETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGL 166

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 30/153 (19%), Positives = 47/153 (30%), Gaps = 47/153 (30%)

Query: 572 THE-----YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVVG 623
           T       Y APE++    + + VD W+ G    E+   K  F+GS +   L    +V+G
Sbjct: 177 TSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIG 236

Query: 624 -------------QQLRFPDSPATSYASR---------DLIRGLLVKEPQHRLGVKRGAT 661
                         +  F    A               DL+   L   P  R+     A 
Sbjct: 237 LPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRI----SAY 292

Query: 662 EIKQHPFFEGVNWALIRCSTPPEVPRPMEAELP 694
               HP+F+             ++ R  E    
Sbjct: 293 SALSHPYFQ-------------DLERCKENLDS 312

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 10/152 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELS-STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
              +L K+LG G  G V+++  +  T+   A+K M K    S +       E  +++ L 
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKV--AVKTM-KPGSMSVEAFLA---EANVMKTLQ 241

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEY 448
           H  L  L+     +    ++ E+   G L   L+  + G          ++A++   + +
Sbjct: 242 HDKLVKLHAVVTKEPI-YIITEFMAKGSLLDFLKSDE-GSKQPLPKLIDFSAQIAEGMAF 299

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +     ++RDL+  N+LV       ++DF L+
Sbjct: 300 IEQRNYIHRDLRAANILVSASLVCKIADFGLA 331

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 15/160 (9%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           +S +  L ++G G  G V+ +    T    A+K   K  + + K+       REI  LQL
Sbjct: 16  VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALK---KVLMENEKEGFPITALREIKILQL 72

Query: 388 LDHPFLPTLY-------THFETDRFSC-LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYA 439
           L H  +  L        + +   + S  LV ++C   DL  L        F+    +   
Sbjct: 73  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGL-LSNVLVKFTLSEIKRVM 130

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
             +L  L Y+H   +++RD+K  NVL+  DG + L+DF L
Sbjct: 131 QMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGL 170

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 40/134 (29%)

Query: 572 THE-----YLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVV 622
           T+      Y  PE++ GE   G  +D W  G  + E+       +G+  +  L     + 
Sbjct: 186 TNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLC 245

Query: 623 G----------------QQLRFPDSPATSYASR-----------DLIRGLLVKEPQHRLG 655
           G                ++L            R           DLI  LLV +P  R+ 
Sbjct: 246 GSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRI- 304

Query: 656 VKRGATEIKQHPFF 669
               + +   H FF
Sbjct: 305 ---DSDDALNHDFF 315

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 26/163 (15%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMK----VMDKASLASRKKLTRAQTEREI-- 384
             ++ LK +G G  G V  +  +      A+K         + A R         RE+  
Sbjct: 62  KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKR-------AYRELVL 114

Query: 385 LQLLDHPFLPTLY------THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARF 437
           ++ ++H  + +L          E  +   LVME     +L   ++     +        +
Sbjct: 115 MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELM-DANLCQVIQMELDHERM-----SY 168

Query: 438 YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              ++L  +++LH  G+++RDLKP N++V+ D  + + DF L+
Sbjct: 169 LLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 211

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 51/155 (32%)

Query: 564 ARSMS-------FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA 616
           AR+         +V T  Y APE+I G G+   VD W+ G  + E++  K  F G     
Sbjct: 211 ARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYID 270

Query: 617 TL---FNVVG------------------QQLR----------FPDSPATSYAS------- 638
                   +G                  +             FPDS   + +        
Sbjct: 271 QWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKAS 330

Query: 639 --RDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
             RDL+  +LV +P  R+ V     +  QHP+   
Sbjct: 331 QARDLLSKMLVIDPAKRISV----DDALQHPYINV 361

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYF--AMKVMDKASLASRKKLTRAQTEREILQLLDHPFLP 394
           K LG G+ G+V        +     A+K++ K              E  ++Q LD+P++ 
Sbjct: 23  KELGSGNFGTVKKGYYQMKKVVKTVAVKIL-KNEANDPALKDELLAEANVMQQLDNPYIV 81

Query: 395 TLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG 453
            +    E + +  LVME    G L+  L+Q    +H  +        +V + ++YL    
Sbjct: 82  RMIGICEAESW-MLVMEMAELGPLNKYLQQ---NRHVKDKNIIELVHQVSMGMKYLEESN 137

Query: 454 VVYRDLKPENVLVRDDGHIMLSDFDLS 480
            V+RDL   NVL+    +  +SDF LS
Sbjct: 138 FVHRDLAARNVLLVTQHYAKISDFGLS 164

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 13/157 (8%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQL 387
           +  +R + +LG G  G VY +  + T    A+K   +  L   ++       RE+  L+ 
Sbjct: 33  IDRYRRITKLGEGTYGEVYKAIDTVTNETVAIK---RIRLEHEEEGVPGTAIREVSLLKE 89

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
           L H  +  L +    +    L+ EY    DL     + P    S    + +  +++  + 
Sbjct: 90  LQHRNIIELKSVIHHNHRLHLIFEYAEN-DLKKYMDKNPD--VSMRVIKSFLYQLINGVN 146

Query: 448 YLHMLGVVYRDLKPENVLV-----RDDGHIMLSDFDL 479
           + H    ++RDLKP+N+L+      +   + + DF L
Sbjct: 147 FCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 31/133 (23%), Positives = 46/133 (34%), Gaps = 40/133 (30%)

Query: 572 THE-----YLAPEIIKGEGH-GSAVDWWTFG-IFLHELLYGKTPFKGSGNRATL---FNV 621
           THE     Y  PEI+ G  H  ++VD W+   I+  E+L     F G      L   F V
Sbjct: 195 THEIITLWYRPPEILLGSRHYSTSVDIWSIACIWA-EMLMKTPLFPGDSEIDQLFKIFEV 253

Query: 622 VG-------------------------QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV 656
           +G                         + L+            DL+  +L  +P  R+  
Sbjct: 254 LGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRI-- 311

Query: 657 KRGATEIKQHPFF 669
              A    +HP+F
Sbjct: 312 --SAKNALEHPYF 322

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 30/166 (18%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMK----VMDKASLASRKKLTRAQTEREI- 384
           +  ++ LK +G G  G V  +  +      A+K         + A R         RE+ 
Sbjct: 24  LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKR-------AYRELV 76

Query: 385 -LQLLDHP--------FLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYA 434
            ++ ++H         F P        D +  +VME     +L   ++     +      
Sbjct: 77  LMKCVNHKNIIGLLNVFTPQKSLEEFQDVY--IVMELM-DANLCQVIQMELDHERM---- 129

Query: 435 ARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             +   ++L  +++LH  G+++RDLKP N++V+ D  + + DF L+
Sbjct: 130 -SYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 174

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 33/155 (21%), Positives = 50/155 (32%), Gaps = 51/155 (32%)

Query: 564 ARSMS-------FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGS---- 612
           AR+         +V T  Y APE+I G G+   VD W+ G  + E++ G   F G+    
Sbjct: 174 ARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID 233

Query: 613 --------------------GNRA----------------TLFNVVGQQLRFPDSPATSY 636
                                                    LF  V        +   + 
Sbjct: 234 QWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKAS 293

Query: 637 ASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
            +RDL+  +LV +   R+ V     E  QHP+   
Sbjct: 294 QARDLLSKMLVIDASKRISV----DEALQHPYINV 324

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 27/169 (15%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL-------SSTRCYFAMKVM-DKASLASRKKLTRAQTER 382
               + + LG G  G VY             TR   A+K + + AS+  R +      E 
Sbjct: 25  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRV--AIKTVNEAASMRERIEFLN---EA 79

Query: 383 EILQLLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARF- 437
            +++  +   +  L    +  +    + ++ME    GDL + LR  +P    +   A   
Sbjct: 80  SVMKEFNCHHVVRLLGVVSQGQP---TLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPS 136

Query: 438 ------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                  A E+   + YL+    V+RDL   N +V +D  + + DF ++
Sbjct: 137 LSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMT 185

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 11/156 (7%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKA--SLASRKKLTRAQTEREILQLL 388
           S     K +G G+ G VY   L ++     + V  K   +  + K+      E  I+   
Sbjct: 44  SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 103

Query: 389 DHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLL 444
            H  +  L    + ++      ++ EY   G L   LR++     FS          +  
Sbjct: 104 SHHNIIRLEGVISKYKP---MMIITEYMENGALDKFLREKDG--EFSVLQLVGMLRGIAA 158

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            ++YL  +  V+RDL   N+LV  +    +SDF LS
Sbjct: 159 GMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLS 194

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 29/168 (17%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTR-AQTEREILQLL--- 388
           + L+++LG G   +V+L++      + AMK+     +   K  T  A+ E ++LQ +   
Sbjct: 21  YILVRKLGWGHFSTVWLAKDMVNNTHVAMKI-----VRGDKVYTEAAEDEIKLLQRVNDA 75

Query: 389 -----DHPFLP---TLYTHFETDRFS----CLVMEYCPGGDLHTLRQRQPGKHFSEYAAR 436
                D         L  HF     +     +V E   G +L  L ++   +       +
Sbjct: 76  DNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVK 134

Query: 437 FYAAEVLLALEYLH-MLGVVYRDLKPENVLVRD------DGHIMLSDF 477
             + ++LL L+Y+H   G+++ D+KPENVL+           I ++D 
Sbjct: 135 QISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADL 182

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 54/152 (35%)

Query: 568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKG---------------- 611
           + + T EY +PE++ G   G   D W+    + EL+ G   F+                 
Sbjct: 194 NSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQI 253

Query: 612 -------------SGNRATLF-------------------NVVGQQLRFPDSPATSYASR 639
                        +G     F                   +V+ ++ +F    A   +  
Sbjct: 254 IELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEIS-- 311

Query: 640 DLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG 671
           D +  +L  +P+ R      A  +  HP+ + 
Sbjct: 312 DFLSPMLQLDPRKRA----DAGGLVNHPWLKD 339

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 12/156 (7%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYF----AMKVM-DKASLASRKKLTRAQTEREIL 385
           +  R LK LG G  G+V+                +KV+ DK+   S + +T        +
Sbjct: 13  TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTD---HMLAI 69

Query: 386 QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLL 444
             LDH  +  L           LV +Y P G L   +RQ +            +  ++  
Sbjct: 70  GSLDHAHIVRLLGLCPGSSL-QLVTQYLPLGSLLDHVRQHRG--ALGPQLLLNWGVQIAK 126

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            + YL   G+V+R+L   NVL++    + ++DF ++
Sbjct: 127 GMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVA 162

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 68.3 bits (167), Expect = 5e-12
 Identities = 66/385 (17%), Positives = 139/385 (36%), Gaps = 58/385 (15%)

Query: 119 DLMKTV--YVPISQNKSDAACLMKSLSMKGPFLE----------------DLSIRVPPKK 160
            L K +        N +    ++K   +  P                    + + + P++
Sbjct: 189 TLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEE 248

Query: 161 QISAVLSPAESLVEEPSELGALSSPFSVPRASQNTENSLLPPDSEEKECVWDASLPPSGN 220
            IS +     +    P+ L   +   ++  ++          D + K  +    L  +G 
Sbjct: 249 GISYLTDKGAN----PTHLADFNQVQTIQYSNSE--------DKDRKGML---QLKIAGA 293

Query: 221 VSPHSSIDSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCESTKGSVRGDSLESAKT 280
             P  ++ +  +  A ++         +D+I  DG   +      +         E A  
Sbjct: 294 PEP-LTVTAPSLTIAENM---------ADLI--DGYCRLVNGATQSFIIRPQKEGERALP 341

Query: 281 SISRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLG 340
           SI + +++      S+  +++ + +     ++     + + R  +  +      L + +G
Sbjct: 342 SIPKLANNEKQGVRSHTVSVSETDDYAEIIDEEDTYTMPSTRDYE--IQRERIELGRCIG 399

Query: 341 CGDIGSVY---LSELSSTRCYFAMKVM-DKASLASRKKLTRAQTEREILQLLDHPFLPTL 396
            G  G V+        +     A+K   +  S + R+K  +   E   ++  DHP +  L
Sbjct: 400 EGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQ---EALTMRQFDHPHIVKL 456

Query: 397 YTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVV 455
                 +    ++ME C  G+L + L+ R+        +   YA ++  AL YL     V
Sbjct: 457 IGVITENPV-WIIMELCTLGELRSFLQVRKF--SLDLASLILYAYQLSTALAYLESKRFV 513

Query: 456 YRDLKPENVLVRDDGHIMLSDFDLS 480
           +RD+   NVLV  +  + L DF LS
Sbjct: 514 HRDIAARNVLVSSNDCVKLGDFGLS 538

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 66.9 bits (164), Expect = 5e-12
 Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 24/167 (14%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRK-----KLTRAQ-TEREI 384
           S + + + +  G  G+V  + + S     A+K +       R           +   REI
Sbjct: 22  SPYTVQRFISSGSYGAVC-AGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREI 80

Query: 385 --LQLLDHP--------FLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEY 433
             L    HP        F+           +  LV E     DL   +  ++     S  
Sbjct: 81  RLLNHFHHPNILGLRDIFVHFEEPAMH-KLY--LVTELM-RTDLAQVIHDQR--IVISPQ 134

Query: 434 AARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             +++   +LL L  LH  GVV+RDL P N+L+ D+  I + DF+L+
Sbjct: 135 HIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLA 181

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 36/146 (24%), Positives = 51/146 (34%), Gaps = 42/146 (28%)

Query: 564 ARSMS-------FVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNR 615
           AR  +       +V    Y APE++         VD W+ G  + E+   K  F+GS   
Sbjct: 181 AREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFY 240

Query: 616 ATL---FNVVG----QQLRFPDSP-ATSY-------------------AS---RDLIRGL 645
             L     VVG    + +    SP A  Y                   A     DLI  +
Sbjct: 241 NQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKM 300

Query: 646 LVKEPQHRLGVKRGATEIKQHPFFEG 671
           L   PQ R+       +  +HP+FE 
Sbjct: 301 LEFNPQRRIST----EQALRHPYFES 322

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 67.4 bits (165), Expect = 6e-12
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 17/155 (10%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTR-AQTEREILQLL--- 388
           + +LK +G G  G V  +       + A+K+     + + K+  R A  E  IL+ L   
Sbjct: 99  YEVLKVIGKGSFGQVVKAYDHKVHQHVALKM-----VRNEKRFHRQAAEEIRILEHLRKQ 153

Query: 389 ----DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 444
                   +  +  +F      C+  E     +L+ L ++   + FS    R +A  +L 
Sbjct: 154 DKDNTMNVI-HMLENFTFRNHICMTFELL-SMNLYELIKKNKFQGFSLPLVRKFAHSILQ 211

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGH--IMLSDF 477
            L+ LH   +++ DLKPEN+L++  G   I + DF
Sbjct: 212 CLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDF 246

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 66.5 bits (163), Expect = 6e-12
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 17/161 (10%)

Query: 334 RLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
            L K LG G+ GSV    L     +S +   A+K M K   +S++++    +E   ++  
Sbjct: 37  ILGKILGEGEFGSVMEGNLKQEDGTSLKV--AVKTM-KLDNSSQREIEEFLSEAACMKDF 93

Query: 389 DHPFLPTLY-----THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAAR---FYA 439
            HP +  L         +      +++ +   GDLHT L   +          +    + 
Sbjct: 94  SHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFM 153

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            ++ L +EYL     ++RDL   N ++RDD  + ++DF LS
Sbjct: 154 VDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLS 194

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 67.6 bits (165), Expect = 7e-12
 Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELS-STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
              RL  +LG G  G V++   + +TR   A+K + K    S +   +   E ++++ L 
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRV--AIKTL-KPGTMSPEAFLQ---EAQVMKKLR 320

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEY 448
           H  L  LY     +    +V EY   G L   L+    GK+         AA++   + Y
Sbjct: 321 HEKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAY 378

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +  +  V+RDL+  N+LV ++    ++DF L+
Sbjct: 379 VERMNYVHRDLRAANILVGENLVCKVADFGLA 410

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 66.2 bits (162), Expect = 8e-12
 Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKV-----MDKASLASRKKLTRAQTEREIL 385
           + F+ +K LG G  G+VY            + V      +  S  + K++     E  ++
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD---EAYVM 71

Query: 386 QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLL 444
             +D+P +  L     T     L+ +  P G L   +R+ +   +        +  ++  
Sbjct: 72  ASVDNPHVCRLLGICLTSTV-QLITQLMPFGCLLDYVREHKD--NIGSQYLLNWCVQIAK 128

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            + YL    +V+RDL   NVLV+   H+ ++DF L+
Sbjct: 129 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLA 164

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 15/155 (9%)

Query: 334 RLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVM-DKASLASRKKLTRAQTEREILQL 387
              + +G G  G VY   L         C  A+K +     +    +      E  I++ 
Sbjct: 28  HFNEVIGRGHFGCVYHGTLLDNDGKKIHC--AVKSLNRITDIGEVSQFLT---EGIIMKD 82

Query: 388 LDHPFLPTLY-THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLA 445
             HP + +L      ++    +V+ Y   GDL   +R      + +      +  +V   
Sbjct: 83  FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETH--NPTVKDLIGFGLQVAKG 140

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++YL     V+RDL   N ++ +   + ++DF L+
Sbjct: 141 MKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLA 175

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 10/152 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL-SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
               LLK LG G  G V L +         A+K++ K    S  +  +   E + +  L 
Sbjct: 8   EEITLLKELGSGQFGVVKLGKWKGQYDV--AVKMI-KEGSMSEDEFFQ---EAQTMMKLS 61

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEY 448
           HP L   Y     +    +V EY   G L   LR    GK            +V   + +
Sbjct: 62  HPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSH--GKGLEPSQLLEMCYDVCEGMAF 119

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           L     ++RDL   N LV  D  + +SDF ++
Sbjct: 120 LESHQFIHRDLAARNCLVDRDLCVKVSDFGMT 151

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 11/155 (7%)

Query: 331 SHFRLLKRLGCGDIGSVY---LSELSSTRCYFAMKVM-DKASLASRKKLTRAQTEREILQ 386
               L + +G G  G V+        +     A+K   +  S + R+K  +   E   ++
Sbjct: 15  ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQ---EALTMR 71

Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLA 445
             DHP +  L      +    ++ME C  G+L + L+ R+        +   YA ++  A
Sbjct: 72  QFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKY--SLDLASLILYAYQLSTA 128

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           L YL     V+RD+   NVLV  +  + L DF LS
Sbjct: 129 LAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLS 163

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 44/170 (25%), Positives = 65/170 (38%), Gaps = 25/170 (14%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL-------SSTRCYFAMKVMDKASLASRKKLTRAQTERE 383
               L   LG G  G V+L+E               A+K + +AS ++R+   R   E E
Sbjct: 41  RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLV--AVKALKEASESARQDFQR---EAE 95

Query: 384 ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARF----- 437
           +L +L H  +   +      R   +V EY   GDL+  LR   P                
Sbjct: 96  LLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPL 155

Query: 438 -------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                   A++V   + YL  L  V+RDL   N LV     + + DF +S
Sbjct: 156 GLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMS 205

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 45/158 (28%), Positives = 60/158 (37%), Gaps = 16/158 (10%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYF---AMKVM-DKASLASRKKLTRAQTEREILQ 386
           S   + K +G GD G V    L          A+K +    +   R+       E  I+ 
Sbjct: 49  SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLS---EASIMG 105

Query: 387 LLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEV 442
             DHP +  L    T       + +V EY   G L T LR       F+          V
Sbjct: 106 QFDHPNIIRLEGVVTRGRL---AMIVTEYMENGSLDTFLRTH--DGQFTIMQLVGMLRGV 160

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              + YL  LG V+RDL   NVLV  +    +SDF LS
Sbjct: 161 GAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLS 198

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 43/172 (25%), Positives = 65/172 (37%), Gaps = 28/172 (16%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYF-----AMKVMDKASLASRKKLTRAQTEREIL 385
               L + LG G  G V+L+E  +          A+K +   +LA+RK     Q E E+L
Sbjct: 15  RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDF---QREAELL 71

Query: 386 QLLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAAR----- 436
             L H  +   Y      +      +V EY   GDL+  LR   P               
Sbjct: 72  TNLQHEHIVKFYGVCGDGDP---LIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKG 128

Query: 437 --------FYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                     A+++   + YL     V+RDL   N LV  +  + + DF +S
Sbjct: 129 ELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMS 180

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTR-AQTEREILQLL- 388
             + +   +G G  G V  +     + + A+K+     + ++K     AQ E  +L+L+ 
Sbjct: 54  DRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKI-----IKNKKAFLNQAQIEVRLLELMN 108

Query: 389 -----DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVL 443
                   ++  L  HF      CLV E     +L+ L +    +  S    R +A ++ 
Sbjct: 109 KHDTEMKYYIVHLKRHFMFRNHLCLVFEML-SYNLYDLLRNTNFRGVSLNLTRKFAQQMC 167

Query: 444 LALEYLHM--LGVVYRDLKPENVLVRDDGH--IMLSDF 477
            AL +L    L +++ DLKPEN+L+ +     I + DF
Sbjct: 168 TALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDF 205

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR 615
           Y +PE++ G  +  A+D W+ G  L E+  G+  F G+   
Sbjct: 224 YRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEV 264

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 21/168 (12%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELS--STRCYFAMKVM-DKASLASRKKLTRAQTEREIL-Q 386
           +  +    +G G+ G V  + +     R   A+K M + AS    +       E E+L +
Sbjct: 25  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAG---ELEVLCK 81

Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLA 445
           L  HP +  L    E   +  L +EY P G+L   LR+ +  +    +A     A  L +
Sbjct: 82  LGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSS 141

Query: 446 LEYLHML-------------GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            + LH                 ++RDL   N+LV ++    ++DF LS
Sbjct: 142 QQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLS 189

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 11/155 (7%)

Query: 331 SHFRLLK-RLGCGDIGSVYLSELSSTRCYF--AMKVM-DKASLASRKKLTRAQTEREILQ 386
            +  +    LGCG+ GSV        +     A+KV+      A  +++ R   E +I+ 
Sbjct: 9   DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMR---EAQIMH 65

Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLA 445
            LD+P++  L    + +    LVME   GG LH  L  +   +            +V + 
Sbjct: 66  QLDNPYIVRLIGVCQAEAL-MLVMEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVSMG 122

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           ++YL     V+RDL   NVL+ +  +  +SDF LS
Sbjct: 123 MKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLS 157

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 30/169 (17%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMK--VMDKASLASRKKLTRAQTEREI--LQ 386
           S +  LK LGCG  G V+ +  +      A+K  V+                 REI  ++
Sbjct: 11  SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKH-------ALREIKIIR 63

Query: 387 LLDHP--------FLPTLYTHFETDRFSC------LVMEYCPGGDLHTLRQRQPGKHFSE 432
            LDH           P+     +            +V EY    DL  + ++ P     E
Sbjct: 64  RLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYM-ETDLANVLEQGP---LLE 119

Query: 433 YAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV-RDDGHIMLSDFDLS 480
             AR +  ++L  L+Y+H   V++RDLKP N+ +  +D  + + DF L+
Sbjct: 120 EHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLA 168

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 33/131 (25%)

Query: 570 VGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVVG-- 623
           + T  Y +P ++     +  A+D W  G    E+L GKT F G+     +      +   
Sbjct: 185 LVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVV 244

Query: 624 --QQLRFPDSPATSY------------------AS---RDLIRGLLVKEPQHRLGVKRGA 660
             +  +   S    Y                   S    D +  +L   P  RL      
Sbjct: 245 HEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTA---- 300

Query: 661 TEIKQHPFFEG 671
            E   HP+   
Sbjct: 301 EEALSHPYMSI 311

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 15/155 (9%)

Query: 334 RLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVM-DKASLASRKKLTRAQTEREILQL 387
              + +G G  G VY  E      +  +C  A+K +     +   +   R   E  +++ 
Sbjct: 24  HSDRVIGKGHFGVVYHGEYIDQAQNRIQC--AIKSLSRITEMQQVEAFLR---EGLLMRG 78

Query: 388 LDHPFLPTLY-THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLA 445
           L+HP +  L       +    +++ Y   GDL   +R  Q      +  +  +  +V   
Sbjct: 79  LNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLIS--FGLQVARG 136

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +EYL     V+RDL   N ++ +   + ++DF L+
Sbjct: 137 MEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLA 171

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 15/157 (9%)

Query: 331 SHFRLLKRLGCGDIGSVY-----LSELSSTRCYFAMKVM-DKASLASRKKLTRAQTEREI 384
               L + LG G  G VY       +        A+K      +L +++K      E  I
Sbjct: 12  EDVVLNRILGEGFFGEVYEGVYTNHKGEKINV--AVKTCKKDCTLDNKEKFMS---EAVI 66

Query: 385 LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVL 443
           ++ LDHP +  L    E +    ++ME  P G+L   L + +            Y+ ++ 
Sbjct: 67  MKNLDHPHIVKLIGIIEEEPT-WIIMELYPYGELGHYLERNKN--SLKVLTLVLYSLQIC 123

Query: 444 LALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            A+ YL  +  V+RD+   N+LV     + L DF LS
Sbjct: 124 KAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLS 160

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 21/166 (12%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYF-------AMKVMDKASLASRKKLTRAQTERE 383
                 + LG G    ++         Y         +KV+DKA     +          
Sbjct: 8   EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFE---AAS 64

Query: 384 ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEV 442
           ++  L H  L   Y        + LV E+   G L T L++ +     +       A ++
Sbjct: 65  MMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKN--CINILWKLEVAKQL 122

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIM--------LSDFDLS 480
             A+ +L    +++ ++  +N+L+  +            LSD  +S
Sbjct: 123 AAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGIS 168

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 334 RLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVM-DKASLASRKKLTRAQTEREILQL 387
              + +G G  G VY   L         C  A+K +     +    +      E  I++ 
Sbjct: 92  HFNEVIGRGHFGCVYHGTLLDNDGKKIHC--AVKSLNRITDIGEVSQFLT---EGIIMKD 146

Query: 388 LDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVL 443
             HP + +L       E      +V+ Y   GDL   +R      + +      +  +V 
Sbjct: 147 FSHPNVLSLLGICLRSEGSPL--VVLPYMKHGDLRNFIRNETH--NPTVKDLIGFGLQVA 202

Query: 444 LALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             +++L     V+RDL   N ++ +   + ++DF L+
Sbjct: 203 KGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLA 239

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 63.0 bits (154), Expect = 6e-11
 Identities = 43/175 (24%), Positives = 65/175 (37%), Gaps = 33/175 (18%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL-------SSTRCYFAMKVM-DKASLASRKKLTRAQTER 382
           S  R ++ LG    G VY   L        +     A+K + DKA    R++      E 
Sbjct: 9   SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAV--AIKTLKDKAEGPLREEFRH---EA 63

Query: 383 EILQLLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFY 438
            +   L HP +  L    T  +      ++  YC  GDLH  L  R P            
Sbjct: 64  MLRARLQHPNVVCLLGVVTKDQP---LSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRT 120

Query: 439 AAEVLLALEYLHML-----GVVY--------RDLKPENVLVRDDGHIMLSDFDLS 480
               L   +++H++     G+ Y        +DL   NVLV D  ++ +SD  L 
Sbjct: 121 VKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLF 175

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 63.0 bits (154), Expect = 6e-11
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 10/152 (6%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELS-STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
              +L++RLG G  G V++   +  T+   A+K + K    S         E  +++ L 
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKV--AVKSL-KQGSMSPDAFLA---EANLMKQLQ 66

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEY 448
           H  L  LY     +    ++ EY   G L   L+    G   +       AA++   + +
Sbjct: 67  HQRLVRLYAVVTQEPI-YIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAF 124

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +     ++RDL+  N+LV D     ++DF L+
Sbjct: 125 IEERNYIHRDLRAANILVSDTLSCKIADFGLA 156

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 64.6 bits (157), Expect = 7e-11
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 10/148 (6%)

Query: 337 KRLGCGDIGSVYLSELSSTRCYF--AMKVM-DKASLASRKKLTRAQTEREILQLLDHPFL 393
             LGCG+ GSV        +     A+KV+      A  +++ R   E +I+  LD+P++
Sbjct: 342 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMR---EAQIMHQLDNPYI 398

Query: 394 PTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
             L    + +    LVME   GG LH  L  +   +            +V + ++YL   
Sbjct: 399 VRLIGVCQAEAL-MLVMEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVSMGMKYLEEK 455

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             V+R+L   NVL+ +  +  +SDF LS
Sbjct: 456 NFVHRNLAARNVLLVNRHYAKISDFGLS 483

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 41/180 (22%)

Query: 334 RLLKRLGCGDIGSVYLSEL-------SSTRCYFAMKVM-DKASLASRKKLTRAQTEREIL 385
             ++ +G G  G V+ +           T    A+K++ ++AS   +    R   E  ++
Sbjct: 50  EYVRDIGEGAFGRVFQARAPGLLPYEPFTMV--AVKMLKEEASADMQADFQR---EAALM 104

Query: 386 QLLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARF---- 437
              D+P +  L          +  CL+ EY   GDL+  LR   P    S   +      
Sbjct: 105 AEFDNPNIVKLLGVCAV---GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRA 161

Query: 438 -----------------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                             A +V   + YL     V+RDL   N LV ++  + ++DF LS
Sbjct: 162 RVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLS 221

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 62.6 bits (153), Expect = 7e-11
 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 8/151 (5%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           S    ++ +G G  G V+L    +     A+K + +    S +       E E++  L H
Sbjct: 8   SELTFVQEIGSGQFGLVHLGYWLNK-DKVAIKTI-REGAMSEEDFIE---EAEVMMKLSH 62

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           P L  LY         CLV E+   G L   LR ++    F+         +V   + YL
Sbjct: 63  PKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRG--LFAAETLLGMCLDVCEGMAYL 120

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
               V++RDL   N LV ++  I +SDF ++
Sbjct: 121 EEACVIHRDLAARNCLVGENQVIKVSDFGMT 151

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 63.5 bits (155), Expect = 8e-11
 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 16/158 (10%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL---SSTRCYFAMKVM-DKASLASRKKLTRAQTEREILQ 386
           ++  + K +G G+ G V    L   S      A+K +    +   R+       E  I+ 
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDF---LGEASIMG 101

Query: 387 LLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEV 442
             DHP +  L    T  +      +V EY   G L + LR+      F+          +
Sbjct: 102 QFDHPNIIRLEGVVTKSKP---VMIVTEYMENGSLDSFLRKHDA--QFTVIQLVGMLRGI 156

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              ++YL  +G V+RDL   N+L+  +    +SDF L 
Sbjct: 157 ASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLG 194

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 63.6 bits (155), Expect = 8e-11
 Identities = 43/190 (22%), Positives = 70/190 (36%), Gaps = 51/190 (26%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMK-VMDKASLASRKKLTRAQTEREILQLL 388
              + L K LG G  G V       +   FA+K V+      +R        E +I+++L
Sbjct: 6   SKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNR--------ELDIMKVL 57

Query: 389 DHPFLPTLYTHFETDRFSC--------------------------------------LVM 410
           DH  +  L  +F T                                           ++M
Sbjct: 58  DHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIM 117

Query: 411 EYCPGGDLHTL--RQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV-R 467
           EY P   LH +     + G+         Y  ++  A+ ++H LG+ +RD+KP+N+LV  
Sbjct: 118 EYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNS 176

Query: 468 DDGHIMLSDF 477
            D  + L DF
Sbjct: 177 KDNTLKLCDF 186

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 33/159 (20%)

Query: 568 SFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---FNVVG 623
           +++ +  Y APE++ G      ++D W+ G    EL+ GK  F G  +   L     ++G
Sbjct: 200 AYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMG 259

Query: 624 --------------QQLRFPDSPATSYASR----------DLIRGLLVKEPQHRLGVKRG 659
                          ++RFP   A  +             DL+  +L  EP  R+     
Sbjct: 260 TPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRI----N 315

Query: 660 ATEIKQHPFFEGV-NWALIRCSTPPEVPRPMEAELPGKF 697
             E   HPFF+ + N            P  +   +P  F
Sbjct: 316 PYEAMAHPFFDHLRNSYESEVKNNSNFPHGVNQNIPQLF 354

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 62.7 bits (153), Expect = 9e-11
 Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 29/174 (16%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL-------SSTRCYFAMKVM-DKASLASRKKLTRAQTER 382
              +L K LG G  G V  ++        +      A+K++ + A+ +  + L     E 
Sbjct: 27  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTV--AVKMLKEGATHSEHRALMS---EL 81

Query: 383 EILQLLD-HPFLPTLYTH-FETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARF-- 437
           +IL  +  H  +  L     +      +++E+C  G+L T LR ++      + A     
Sbjct: 82  KILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLY 141

Query: 438 -----------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                      Y+ +V   +E+L     ++RDL   N+L+ +   + + DF L+
Sbjct: 142 KDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLA 195

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 21/186 (11%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMK----VMDKASLASRKKLTRAQTEREI-- 384
             + L+K+LG G  G V+ S    T    A+K        ++ A R       T REI  
Sbjct: 9   RKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQR-------TFREIMI 61

Query: 385 LQLL-DHPFLPTLYTHFETDRFSC--LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAE 441
           L  L  H  +  L      D      LV +Y    DLH + +            ++   +
Sbjct: 62  LTELSGHENIVNLLNVLRADNDRDVYLVFDYM-ETDLHAVIRANI---LEPVHKQYVVYQ 117

Query: 442 VLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSR 501
           ++  ++YLH  G+++RD+KP N+L+  + H+ ++DF LS R  V+   +  +   S    
Sbjct: 118 LIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLS-RSFVNIRRVTNNIPLSINEN 176

Query: 502 RGPGGS 507
                 
Sbjct: 177 TENFDD 182

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 26/175 (14%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTR-AQTEREILQLL--- 388
           F +++++G G  G V L +    + Y+A+KV     + + KK TR A+ E +IL+ +   
Sbjct: 37  FLVIRKMGDGTFGRVLLCQHIDNKKYYAVKV-----VRNIKKYTRSAKIEADILKKIQND 91

Query: 389 ---DHPFLPTLYTHFETDRFSCLVME------YCPGGDLHTLRQRQPGKHFSEYAARFYA 439
              ++  +   +  F      CL+ E      Y    ++ T         F     + Y 
Sbjct: 92  DINNNNIV-KYHGKFMYYDHMCLIFEPLGPSLY----EIITRNNYNG---FHIEDIKLYC 143

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
            E+L AL YL  + + + DLKPEN+L+ D            +       + +T S
Sbjct: 144 IEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKS 198

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 48/140 (34%)

Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL---------------- 618
           Y APE+I   G   + D W+FG  L EL  G   F+   +   L                
Sbjct: 225 YRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLY 284

Query: 619 ----------FNVVGQQLRFPDSPATSYASR------------------DLIRGLLVKEP 650
                      N    +L +P++ ++  + +                  D +  +L  +P
Sbjct: 285 EATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDP 344

Query: 651 QHRLGVKRGATEIKQHPFFE 670
             R        E+ +H F E
Sbjct: 345 TLRP----SPAELLKHKFLE 360

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 30/175 (17%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL---------SSTRCYFAMKVM-DKASLASRKKLTRAQT 380
               L K LG G  G V ++E           +     A+K++ D A+      L     
Sbjct: 35  DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTV--AVKMLKDDATEKDLSDLVS--- 89

Query: 381 EREIL-QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARF- 437
           E E++  +  H  +  L      D    +++EY   G+L   LR R+P      Y     
Sbjct: 90  EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRV 149

Query: 438 ------------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                          ++   +EYL     ++RDL   NVLV ++  + ++DF L+
Sbjct: 150 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA 204

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 41/183 (22%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL-------SSTRCYFAMKVM-DKASLASRKKLTRAQTER 382
            +  L K LG G+ G V  +           T    A+K++ + AS +  + L     E 
Sbjct: 23  KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTV--AVKMLKENASPSELRDLLS---EF 77

Query: 383 EILQLLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARF- 437
            +L+ ++HP +  LY   +         L++EY   G L   LR+ +        +    
Sbjct: 78  NVLKQVNHPHVIKLYGACSQDGP---LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSR 134

Query: 438 --------------------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
                               +A ++   ++YL  + +V+RDL   N+LV +   + +SDF
Sbjct: 135 NSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDF 194

Query: 478 DLS 480
            LS
Sbjct: 195 GLS 197

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 43/151 (28%), Positives = 61/151 (40%), Gaps = 8/151 (5%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
                LK LG G  G V   +        A+K++ K    S  +      E +++  L H
Sbjct: 24  KDLTFLKELGTGQFGVVKYGKWRGQY-DVAIKMI-KEGSMSEDEFIE---EAKVMMNLSH 78

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYL 449
             L  LY      R   ++ EY   G L   LR+ +    F          +V  A+EYL
Sbjct: 79  EKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH--RFQTQQLLEMCKDVCEAMEYL 136

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                ++RDL   N LV D G + +SDF LS
Sbjct: 137 ESKQFLHRDLAARNCLVNDQGVVKVSDFGLS 167

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 30/175 (17%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL---------SSTRCYFAMKVM-DKASLASRKKLTRAQT 380
               L K LG G  G V ++E           +     A+K++ D A+      L     
Sbjct: 81  DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTV--AVKMLKDDATEKDLSDLVS--- 135

Query: 381 EREIL-QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARF- 437
           E E++  +  H  +  L      D    +++EY   G+L   LR R+P      Y     
Sbjct: 136 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRV 195

Query: 438 ------------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                          ++   +EYL     ++RDL   NVLV ++  + ++DF L+
Sbjct: 196 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLA 250

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 27/169 (15%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL-------SSTRCYFAMKVM-DKASLASRKKLTRAQTER 382
            +  L++ LG G  G VY  ++       S  +   A+K + +  S            E 
Sbjct: 71  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQV--AVKTLPEVCSEQDELDF---LMEA 125

Query: 383 EILQLLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQP----GKHFSEYA 434
            I+   +H  +                 +++E   GGDL + LR+ +P        +   
Sbjct: 126 LIISKFNHQNIVRCIGVSLQSLP---RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLD 182

Query: 435 ARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIML---SDFDLS 480
               A ++    +YL     ++RD+   N L+   G   +    DF ++
Sbjct: 183 LLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMA 231

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 27/169 (15%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL-------SSTRCYFAMKVM-DKASLASRKKLTRAQTER 382
            +  L++ LG G  G VY  ++       S  +   A+K + +  S            E 
Sbjct: 30  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQV--AVKTLPEVCSEQDELDF---LMEA 84

Query: 383 EILQLLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQP----GKHFSEYA 434
            I+   +H  +                 ++ME   GGDL + LR+ +P        +   
Sbjct: 85  LIISKFNHQNIVRCIGVSLQSLP---RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLD 141

Query: 435 ARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIML---SDFDLS 480
               A ++    +YL     ++RD+   N L+   G   +    DF ++
Sbjct: 142 LLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMA 190

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 30/175 (17%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL-------SSTRCYFAMKVM-DKASLASRKKLTRAQTER 382
           +     K LG G  G V  +         ++     A+K++   A L  R+ L     E 
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTV--AVKMLKPSAHLTEREALMS---EL 77

Query: 383 EIL-QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARF--- 437
           ++L  L +H  +  L         + ++ EYC  GDL   LR+++     S+ +      
Sbjct: 78  KVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMED 137

Query: 438 ------------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                       ++ +V   + +L     ++RDL   N+L+       + DF L+
Sbjct: 138 DELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLA 192

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 30/172 (17%)

Query: 334 RLLKRLGCGDIGSVYLSEL---------SSTRCYFAMKVM-DKASLASRKKLTRAQTERE 383
            L K LG G  G V L+E            T+   A+K++   A+      L     E E
Sbjct: 72  VLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKV--AVKMLKSDATEKDLSDLIS---EME 126

Query: 384 IL-QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARF---- 437
           ++  +  H  +  L      D    +++EY   G+L   L+ R+P      Y        
Sbjct: 127 MMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEE 186

Query: 438 ---------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                     A +V   +EYL     ++RDL   NVLV +D  + ++DF L+
Sbjct: 187 QLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLA 238

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 17/169 (10%)

Query: 333 FRLLKRLGCGDIGSVYL-SELSSTRCYFAMKVMDKASLASRKKLTR-AQTEREILQLL-- 388
           + ++  LG G  G V    + +  +   A+K++      +  K    A+ E  +L+ +  
Sbjct: 21  YEIVGNLGEGTFGKVVECLDHARGKSQVALKII-----RNVGKYREAARLEINVLKKIKE 75

Query: 389 -----DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVL 443
                    +  +   F      C+  E   G +     +    + +     R  A ++ 
Sbjct: 76  KDKENKFLCV-LMSDWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLC 133

Query: 444 LALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC-AVSPTLIK 491
            AL +LH   + + DLKPEN+L  +     L +   S    +V  T I+
Sbjct: 134 HALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIR 182

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 32/164 (19%), Positives = 49/164 (29%), Gaps = 55/164 (33%)

Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR---ATLFNVVG-------- 623
           Y  PE+I   G     D W+ G  L E   G T F+   NR     +  ++G        
Sbjct: 205 YRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIH 264

Query: 624 ----------QQLRFPDSPATSYASR---------------------DLIRGLLVKEPQH 652
                       L + ++ +     +                     DL+R +L  +P  
Sbjct: 265 RTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQ 324

Query: 653 RLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGK 696
           R+       E   HPFF G           PE      +  P +
Sbjct: 325 RI----TLAEALLHPFFAG---------LTPEERSFHTSRNPSR 355

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 29/175 (16%)

Query: 333 FRLLKRLGCGDIGSVYLS-ELSSTRCYFAMKVMDKASLASRKKLTR-AQTEREILQLL-- 388
           + ++  LG G  G V    +  +   + A+K+     + +  +    A++E ++L+ L  
Sbjct: 16  YEIVDTLGEGAFGKVVECIDHKAGGRHVAVKI-----VKNVDRYCEAARSEIQVLEHLNT 70

Query: 389 -----DHPFLPTLYTHFETDRFSCLVME------YCPGGDLHTLRQRQPGKHFSEYAARF 437
                    +  +   FE     C+V E      Y    D        P   F     R 
Sbjct: 71  TDPNSTFRCV-QMLEWFEHHGHICIVFELLGLSTY----DFIKENGFLP---FRLDHIRK 122

Query: 438 YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL-SLRCAVSPTLIK 491
            A ++  ++ +LH   + + DLKPEN+L     +    +  +      +    IK
Sbjct: 123 MAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIK 177

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 32/140 (22%), Positives = 48/140 (34%), Gaps = 46/140 (32%)

Query: 575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR---ATLFNVVG-------- 623
           Y APE+I   G     D W+ G  L E   G T F    ++   A +  ++G        
Sbjct: 200 YRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQ 259

Query: 624 ---QQLRF----PDSPATSYASR------------------------DLIRGLLVKEPQH 652
              ++  F     D    S A R                        DLI+ +L  +P  
Sbjct: 260 KTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAK 319

Query: 653 RLGVKRGATEIKQHPFFEGV 672
           R+       E  +HPFF+ +
Sbjct: 320 RI----TLREALKHPFFDLL 335

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 25/163 (15%)

Query: 334 RLLKRLGCGDIGSVY--LSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
               ++G G  G VY    +       +A+K ++   ++       A  E  +L+ L HP
Sbjct: 24  YEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMS-----ACREIALLRELKHP 78

Query: 392 FLPTLY----THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEV----- 442
            + +L     +H +   +  L+ +Y    DL  + +       ++   +     V     
Sbjct: 79  NVISLQKVFLSHADRKVW--LLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLY 135

Query: 443 --LLALEYLHMLGVVYRDLKPENVLVRDD----GHIMLSDFDL 479
             L  + YLH   V++RDLKP N+LV  +    G + ++D   
Sbjct: 136 QILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGF 178

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 32/171 (18%)

Query: 334 RLLKRLGCGDIGSVYLSEL-------SSTRCYFAMKVM-DKASLASRKKLTRAQTEREIL 385
           +  K LG G  G V  +         +  +   A+K++   A    ++ L     E +I+
Sbjct: 49  QFGKTLGAGAFGKVVEATAFGLGKEDAVLKV--AVKMLKSTAHADEKEALMS---ELKIM 103

Query: 386 -QLLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARF--- 437
             L  H  +  L    TH        ++ EYC  GDL   LR++          A     
Sbjct: 104 SHLGQHENIVNLLGACTHGGP---VLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANST 160

Query: 438 --------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                   ++++V   + +L     ++RD+   NVL+ +     + DF L+
Sbjct: 161 ASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLA 211

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 40/158 (25%), Positives = 61/158 (38%), Gaps = 22/158 (13%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F     +G G  G VY   L       A+K     S    ++    +TE E L    HP 
Sbjct: 41  FDHKFLIGHGVFGKVYKGVLRDGAK-VALKRRTPESSQGIEEF---ETEIETLSFCRHPH 96

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDL--HTLRQRQPGKHFS--------EYAARFYAAEV 442
           L +L    +      L+ +Y   G+L  H      P    S          AAR      
Sbjct: 97  LVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAAR------ 150

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              L YLH   +++RD+K  N+L+ ++    ++DF +S
Sbjct: 151 --GLHYLHTRAIIHRDVKSINILLDENFVPKITDFGIS 186

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 14/155 (9%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           F     LG G  G VY   L+      A+K + +      +   + QTE E++ +  H  
Sbjct: 32  FSNKNILGRGGFGKVYKGRLADGTL-VAVKRLKEERTQGGEL--QFQTEVEMISMAVHRN 88

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDL-HTLRQRQPGKHFSEYAARFY----AAEVLLALE 447
           L  L     T     LV  Y   G +   LR+R   +   ++  R      +A     L 
Sbjct: 89  LLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSAR---GLA 145

Query: 448 YLH---MLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
           YLH      +++RD+K  N+L+ ++   ++ DF L
Sbjct: 146 YLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGL 180

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 44/180 (24%), Positives = 67/180 (37%), Gaps = 41/180 (22%)

Query: 334 RLLKRLGCGDIGSVYLSEL-------SSTRCYFAMKVM-DKASLASRKKLTRAQTEREIL 385
              K LG G  G V  +          S +   A+K++ +KA  + R+ L     E +++
Sbjct: 48  EFGKVLGSGAFGKVMNATAYGISKTGVSIQV--AVKMLKEKADSSEREALMS---ELKMM 102

Query: 386 -QLLDHPFLPTLY---THFETDRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARF--- 437
            QL  H  +  L    T         L+ EYC  GDL   LR ++      E        
Sbjct: 103 TQLGSHENIVNLLGACTLSGP---IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKR 159

Query: 438 -----------------YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                            +A +V   +E+L     V+RDL   NVLV     + + DF L+
Sbjct: 160 LEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLA 219

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 1e-07
 Identities = 38/257 (14%), Positives = 70/257 (27%), Gaps = 90/257 (35%)

Query: 273 DSLESAKTSISRASDSSGLSDDSNW--SNITGSANKPH---------------------K 309
            +L S +  + +      L  +  +  S I     +P                      K
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 310 GNDPRWKAILAIR-----ARDG----ILGMSHFRLLKRLGCGD---IGSVYLSELSSTRC 357
            N  R +  L +R      R      I G+        LG G       V LS     +C
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGV--------LGSGKTWVALDVCLSY--KVQC 178

Query: 358 YFAMKV--MDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPG 415
               K+  +          L    +   +L++L       L    + +        +   
Sbjct: 179 KMDFKIFWL---------NLKNCNSPETVLEMLQ-----KLLYQIDPN--------WTSR 216

Query: 416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLS 475
            D H+   +           R   ++      Y + L +V  +       V++      +
Sbjct: 217 SD-HSSNIKLRIHSIQAELRRLLKSK-----PYENCL-LVLLN-------VQNAKAW--N 260

Query: 476 DFDLSLRCAVSPTLIKT 492
            F+  L C     L+ T
Sbjct: 261 AFN--LSC---KILLTT 272

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-06
 Identities = 68/477 (14%), Positives = 135/477 (28%), Gaps = 152/477 (31%)

Query: 16  SGK--LPAAVQVSHLCASSVIEV---GQVSNMHGGLVREEVVRLNNVRDFKVSNTPASVR 70
           SGK  +   V     C S  ++     ++  ++          L  ++       P    
Sbjct: 161 SGKTWVALDV-----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 71  TWKGKDSLPEREEIVADTLILKGSDDFFEEAGPSSF---SGVSHPAEPIDT-DLMKTVYV 126
                 ++  R   +   L          +   +       V +  +  +  +L   + +
Sbjct: 216 RSDHSSNIKLRIHSIQAEL----RRLLKSKPYENCLLVLLNVQNA-KAWNAFNLSCKILL 270

Query: 127 PISQNKSDAACLMKSLSMKGPFLEDLSIRVPPKKQISAVLSPAESL----------VEE- 175
             ++ K     L  + +     L+  S            L+P E             ++ 
Sbjct: 271 -TTRFKQVTDFL-SAATTTHISLDHHS----------MTLTPDEVKSLLLKYLDCRPQDL 318

Query: 176 PSELGALS-SPFSV----------PRASQNT------------ENSL--LPPDSEEKECV 210
           P E   L+ +P  +               N             E+SL  L P  E ++  
Sbjct: 319 PRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA-EYRKMF 375

Query: 211 WD-ASLPPSGNVSPHS-SI---DSTGVVTAMSIVNSCASTYRSDVITSDGMLSMERNCES 265
              +  PPS ++     S+   D       M +VN       S        L  ++  ES
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDV-MVVVNKLHK--YS--------LVEKQPKES 424

Query: 266 TKGSVRGDSLESAKT---------------SISRASDSSGLS---DDSNWSNITG----S 303
           T  S+    LE                   +I +  DS  L     D  + +  G    +
Sbjct: 425 TI-SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 304 ANKPHKGN-------DPRWKAILAIRARDGILGMSHFRLLKRLG--CGDIGSVYLSELSS 354
              P +         D R+     +  +           ++         GS+ L+ L  
Sbjct: 484 IEHPERMTLFRMVFLDFRF-----LEQK-----------IRHDSTAWNASGSI-LNTLQQ 526

Query: 355 TRCYFAMKVMDKASLASRKKLTR--AQTEREILQLLDHPFLPTLYTHFETDRFSCLV 409
            + Y             +  +     + ER +  +LD  FLP +  +    +++ L+
Sbjct: 527 LKFY-------------KPYICDNDPKYERLVNAILD--FLPKIEENLICSKYTDLL 568

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 32/158 (20%)

Query: 338 RLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRA-QTEREILQLLDHPFLPTL 396
           ++G G  G VY   +++T    A+K +      + ++L +    E +++    H  L  L
Sbjct: 38  KMGEGGFGVVYKGYVNNTT--VAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVEL 95

Query: 397 YTHFETDRFSCLVMEYCPGGD----LHTLRQRQP-----------GKHFSEYAARFYAAE 441
                     CLV  Y P G     L  L    P           G      AA      
Sbjct: 96  LGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQG------AAN----- 144

Query: 442 VLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
               + +LH    ++RD+K  N+L+ +     +SDF L
Sbjct: 145 ---GINFLHENHHIHRDIKSANILLDEAFTAKISDFGL 179

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 38/223 (17%), Positives = 70/223 (31%), Gaps = 52/223 (23%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVM-----DKASLASRKKLTRAQTEREIL 385
              +  +++G G  G V+     +     A+K++     D  + + +K       E  I 
Sbjct: 20  EKLQRCEKIGEGVFGEVFQ--TIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIIS 77

Query: 386 QLLDH--------------------------PFLPTLYTHFETDRFSC------------ 407
           + L                            P L   + H+ + + S             
Sbjct: 78  KELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQL 137

Query: 408 -LVMEYCPGG-DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH-MLGVVYRDLKPENV 464
            +V+E+  GG DL     +   K  S   A+    ++  +L      L   +RDL   NV
Sbjct: 138 FIVLEFEFGGIDLE----QMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNV 193

Query: 465 LVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGS 507
           L++      L          +    ++ S +D   SR    G 
Sbjct: 194 LLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGI 236

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A* Length = 282

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 371 SRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHF 430
           S   +  A+ E   LQ L    +P +Y          ++ME     +L+ +R   P +  
Sbjct: 144 SVLAIRSARNEFRALQKLQGLAVPKVYAWEGN----AVLMELIDAKELYRVRVENPDEVL 199

Query: 431 SEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
                      +L  +   +  G+V+ DL   NVLV  +  I + DF
Sbjct: 200 DM---------ILEEVAKFYHRGIVHGDLSQYNVLV-SEEGIWIIDF 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	730
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.98
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.94
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.93
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.85
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.74
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.37
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.26
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.2
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	99.05
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.86
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.65
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.52
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.49
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.26
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	98.21
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.2
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.16
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.81
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.74
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.61
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.61
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.51
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.48
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	97.45
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	97.3
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.26
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	97.25
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.2
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	97.17
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	97.01
3mes_A	424	Choline kinase; malaria, structural genomics, stru	96.55
2enz_A	65	NPKC-theta, protein kinase C theta type; zinc bind	96.4
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	95.74
2eli_A	85	Protein kinase C alpha type; PKC-alpha, PKC-A, str	95.73
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	95.14
3uej_A	65	NPKC-delta, protein kinase C delta type; proteine	94.94
2fnf_X	72	Putative RAS effector NORE1; zinc, signal transduc	94.87
2yuu_A	83	NPKC-delta, protein kinase C delta type; metal bin	94.82
2enn_A	77	NPKC-theta, protein kinase C theta type; zinc bind	94.52
1faq_A	52	RAF-1; transferase, serine/threonine-protein kinas	93.89
1ptq_A	50	Protein kinase C delta type; phosphotransferase; 1	93.89
1rfh_A	59	RAS association (ralgds/AF-6) domain family 5; zin	93.82
2row_A	84	RHO-associated protein kinase 2; ATP-binding, coil	93.7
2db6_A	74	SH3 and cysteine rich domain 3; STAC3, C1 domain,	93.56
1y8f_A	66	UNC-13 homolog A, MUNC13-1; cysteine-rich domain,	93.2
1kbe_A	49	Kinase suppressor of RAS; KSR, cysteine-rich domai	90.48
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	85.25
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	84.47
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	82.8
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	80.39

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=3.5e-67  Score=562.39  Aligned_cols=278  Identities=33%  Similarity=0.624  Sum_probs=250.4

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|+++.+++.||||++++..+......+.+.+|+++|+.|+|||||+++++|++++++|||
T Consensus        31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv  110 (311)
T 4aw0_A           31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG  110 (311)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            46899999999999999999999999999999999988766666678899999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||||+||+|.+++.+.  +.++|..+++|++||+.||+|||++|||||||||+||||+.+|++||+|||+|+.+....  
T Consensus       111 mEy~~gG~L~~~i~~~--~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~--  186 (311)
T 4aw0_A          111 LSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPES--  186 (311)
T ss_dssp             ECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTT--
T ss_pred             EecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCC--
Confidence            9999999999998765  679999999999999999999999999999999999999999999999999996531100  


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              ......++
T Consensus       187 ------------------------------------------------------------------------~~~~~~~~  194 (311)
T 4aw0_A          187 ------------------------------------------------------------------------KQARANSF  194 (311)
T ss_dssp             ------------------------------------------------------------------------TCCCBCCC
T ss_pred             ------------------------------------------------------------------------CcccccCc
Confidence                                                                                    01123467


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      |||+.|||||++.+..|+.++|||||||+||||++|++||.+.+..+.+.+|....+.+|.  .++.+++|||++||++|
T Consensus       195 ~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~--~~s~~~~dli~~lL~~d  272 (311)
T 4aw0_A          195 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPE--KFFPKARDLVEKLLVLD  272 (311)
T ss_dssp             CSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCT--TCCHHHHHHHHHHSCSS
T ss_pred             ccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCc--ccCHHHHHHHHHHccCC
Confidence            9999999999999999999999999999999999999999998877788888888887775  58999999999999999


Q ss_pred             CCCcCCchh--cHHHHHcCCCCCCCCcchhccCCCCCC
Q 004790          650 PQHRLGVKR--GATEIKQHPFFEGVNWALIRCSTPPEV  685 (730)
Q Consensus       650 P~~R~t~~~--~a~elL~HPfF~~v~w~~~r~~~pp~~  685 (730)
                      |.+|+|+++  ...+|++||||+++||..++..+||.+
T Consensus       273 p~~R~t~~e~~~~~~i~~Hp~F~~idw~~l~~~~pP~l  310 (311)
T 4aw0_A          273 ATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL  310 (311)
T ss_dssp             GGGSTTSGGGTCHHHHHTSGGGTTCCCTTGGGSCCCCC
T ss_pred             HhHCcChHHHcCCHHHHCCCCcCCCCHHHhcCCCCCCC
Confidence            999999754  456799999999999999988887764

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=8.4e-65  Score=542.72  Aligned_cols=277  Identities=40%  Similarity=0.753  Sum_probs=236.3

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEEC---CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELS---STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~---~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      ..++|++++.||+|+||+||+|++.   .+++.||||++++...... ...++.+|+++|+.|+|||||+++++|++++.
T Consensus        22 ~p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~-~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  100 (304)
T 3ubd_A           22 DPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVR-DRVRTKMERDILVEVNHPFIVKLHYAFQTEGK  100 (304)
T ss_dssp             CGGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEE-ECC------CCCCCCCCTTEECEEEEEEETTE
T ss_pred             CccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChH-HHHHHHHHHHHHHHCCCCCCCeEEEEEEECCE
Confidence            3478999999999999999999884   4688999999987644322 22357789999999999999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|||||||+||+|.+++.+.  +.+++.+++.|++||+.||+|||++|||||||||+|||++.+|++||+|||+|+....
T Consensus       101 ~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~  178 (304)
T 3ubd_A          101 LYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESID  178 (304)
T ss_dssp             EEEEECCCTTCEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC---
T ss_pred             EEEEEEcCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceeccC
Confidence            99999999999999998875  5799999999999999999999999999999999999999999999999999953210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                                                                                                  ....
T Consensus       179 ----------------------------------------------------------------------------~~~~  182 (304)
T 3ubd_A          179 ----------------------------------------------------------------------------HEKK  182 (304)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             ----------------------------------------------------------------------------CCcc
Confidence                                                                                        0012


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ..+++||+.|||||++.+..|+.++|||||||+||||++|+.||.+.+..+.+.+|....+.+|.  .+|.++++||++|
T Consensus       183 ~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~~  260 (304)
T 3ubd_A          183 AYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQ--FLSPEAQSLLRML  260 (304)
T ss_dssp             CCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHH
T ss_pred             ccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCC--cCCHHHHHHHHHH
Confidence            23579999999999999999999999999999999999999999998887888888877776664  5899999999999


Q ss_pred             hcCCCCCcCCch-hcHHHHHcCCCCCCCCcchh--ccCCCCCCC
Q 004790          646 LVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCSTPPEVP  686 (730)
Q Consensus       646 L~~DP~~R~t~~-~~a~elL~HPfF~~v~w~~~--r~~~pp~~p  686 (730)
                      |++||++|||.. .+++|+++||||+++||..+  +...||++|
T Consensus       261 L~~dP~~R~ta~~~~~~eil~Hp~f~~idw~~l~~~~~~pP~~P  304 (304)
T 3ubd_A          261 FKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRREIHPPFKP  304 (304)
T ss_dssp             TCSSGGGSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSSCC
T ss_pred             cccCHHHCCCCCcCCHHHHHcCccccCCCHHHHHhCCCCcCcCC
Confidence            999999999963 45789999999999999977  455677765

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.9e-62  Score=533.68  Aligned_cols=261  Identities=26%  Similarity=0.443  Sum_probs=227.7

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      .+++|+++++||+|+||+||+|+++.+++.||||++++..... ...+++.+|+++|+.|+|||||+++++|++++.+||
T Consensus        22 sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yi  100 (350)
T 4b9d_A           22 SMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSS-KEREESRREVAVLANMKHPNIVQYRESFEENGSLYI  100 (350)
T ss_dssp             CCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCH-HHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCH-HHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEE
Confidence            3689999999999999999999999999999999998775543 456789999999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      |||||+||+|.+++....+..++|.+++.|+.||+.||+|||++|||||||||+||||+.+|++||+|||+|+.+..   
T Consensus       101 VmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~---  177 (350)
T 4b9d_A          101 VMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS---  177 (350)
T ss_dssp             EEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCH---
T ss_pred             EEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecC---
Confidence            99999999999999876667789999999999999999999999999999999999999999999999999953210   


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                               ......+
T Consensus       178 -------------------------------------------------------------------------~~~~~~~  184 (350)
T 4b9d_A          178 -------------------------------------------------------------------------TVELARA  184 (350)
T ss_dssp             -------------------------------------------------------------------------HHHHHHH
T ss_pred             -------------------------------------------------------------------------Ccccccc
Confidence                                                                                     0112245


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      ++||+.|||||++.+..|+.++|||||||+||||++|+.||.+.+..+.+.+|+.+.+. +.+..++.++++||.+||++
T Consensus       185 ~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~-~~~~~~s~~~~~li~~~L~~  263 (350)
T 4b9d_A          185 CIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFP-PVSLHYSYDLRSLVSQLFKR  263 (350)
T ss_dssp             HHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC-CCCTTSCHHHHHHHHHHTCS
T ss_pred             cCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCC-CCCccCCHHHHHHHHHHccC
Confidence            79999999999999999999999999999999999999999998877777777766543 34457899999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||++||+    ++|+|+||||+.
T Consensus       264 dP~~R~s----~~e~l~hp~~~~  282 (350)
T 4b9d_A          264 NPRDRPS----VNSILEKGFIAK  282 (350)
T ss_dssp             SGGGSCC----HHHHHTSHHHHT
T ss_pred             ChhHCcC----HHHHhcCHHhhc
Confidence            9999999    799999999975

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=3.4e-61  Score=559.78  Aligned_cols=287  Identities=34%  Similarity=0.597  Sum_probs=243.9

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHH---HHHhcCCCCCcccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE---ILQLLDHPFLPTLYTHFE  401 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~---IL~~L~HPnIV~L~~~f~  401 (730)
                      ...+.+++|++++.||+|+||+||+|+++.+|+.||||++++..+........+.+|..   +++.++|||||+|+++|+
T Consensus       183 ~~~~slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~  262 (689)
T 3v5w_A          183 NIHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFH  262 (689)
T ss_dssp             TCCCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEE
T ss_pred             CCCCchHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEE
Confidence            34577899999999999999999999999999999999999877655444455555654   455668999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      ++..+|||||||+||+|..++.+.  +.|++..+++|++||+.||+|||++|||||||||+||||+.+|++||+|||+|+
T Consensus       263 ~~~~lylVmEy~~GGdL~~~l~~~--~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~  340 (689)
T 3v5w_A          263 TPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLAC  340 (689)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             ECCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceee
Confidence            999999999999999999998875  679999999999999999999999999999999999999999999999999995


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      .+..                                                                            
T Consensus       341 ~~~~----------------------------------------------------------------------------  344 (689)
T 3v5w_A          341 DFSK----------------------------------------------------------------------------  344 (689)
T ss_dssp             ECSS----------------------------------------------------------------------------
T ss_pred             ecCC----------------------------------------------------------------------------
Confidence            4210                                                                            


Q ss_pred             ccccccccccCcccCChhhhc-cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccc---eeeeecccccCCCCCCCChh
Q 004790          562 TAARSMSFVGTHEYLAPEIIK-GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT---LFNVVGQQLRFPDSPATSYA  637 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~-g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~---l~~i~~~~~~~p~~~~~s~~  637 (730)
                        ....++|||+.|||||++. +..|+.++|||||||+||||++|++||.+.+....   ...+....+.+|  ..+|.+
T Consensus       345 --~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p--~~~S~~  420 (689)
T 3v5w_A          345 --KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELP--DSFSPE  420 (689)
T ss_dssp             --CCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCC--TTSCHH
T ss_pred             --CCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCC--ccCCHH
Confidence              0123569999999999996 46899999999999999999999999987544322   223444555555  468999


Q ss_pred             HHHHHHhhhcCCCCCcCCc-hhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCcCC
Q 004790          638 SRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEAEL  693 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~-~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~~~  693 (730)
                      +++||.+||++||.+|+++ ..+++||++||||+++||..+  +...||++|.......
T Consensus       421 a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~idW~~l~~~~~~pP~~P~~~~~~~  479 (689)
T 3v5w_A          421 LRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNA  479 (689)
T ss_dssp             HHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTCCHHHHHTTCSCCSCCCCTTCSST
T ss_pred             HHHHHHHHccCCHhHCCCCCCCCHHHHhcCccccCCCHHHHHcCCCCcCccCCCCCCCc
Confidence            9999999999999999996 467999999999999999987  5668899887655443

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.9e-61  Score=525.13  Aligned_cols=256  Identities=27%  Similarity=0.425  Sum_probs=225.2

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .+.|+++++||+|+||+||+|+++.+|+.||||++++.....   .+.+.+|++||+.|+|||||+++++|++++.+|||
T Consensus        73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iv  149 (346)
T 4fih_A           73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV  149 (346)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS---GGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hHhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhH---HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            367999999999999999999999999999999998764332   34578999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||||+||+|.+++.+   +.+++.+++.|++||+.||+|||++|||||||||+||||+.+|++||+|||+|+.+..    
T Consensus       150 mEy~~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~----  222 (346)
T 4fih_A          150 MEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK----  222 (346)
T ss_dssp             ECCCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCS----
T ss_pred             EeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCC----
Confidence            999999999998876   3699999999999999999999999999999999999999999999999999964310    


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              ......++
T Consensus       223 ------------------------------------------------------------------------~~~~~~~~  230 (346)
T 4fih_A          223 ------------------------------------------------------------------------EVPRRKSL  230 (346)
T ss_dssp             ------------------------------------------------------------------------SSCCBCCC
T ss_pred             ------------------------------------------------------------------------CCCccccc
Confidence                                                                                    00122357


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-ccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-LRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      +||+.|||||++.+..|+.++|||||||+||||++|++||.+.+..+.+..|.... ..++.+..++.+++|||.+||++
T Consensus       231 ~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~  310 (346)
T 4fih_A          231 VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVR  310 (346)
T ss_dssp             CSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCS
T ss_pred             ccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999877666665554432 23444457899999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||++|||    ++|+|+||||+.
T Consensus       311 dP~~R~t----a~e~l~Hp~~~~  329 (346)
T 4fih_A          311 DPAQRAT----AAELLKHPFLAK  329 (346)
T ss_dssp             STTTSCC----HHHHTTCGGGGG
T ss_pred             ChhHCcC----HHHHhcCHhhcC
Confidence            9999999    799999999985

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=2.5e-61  Score=508.99  Aligned_cols=256  Identities=30%  Similarity=0.485  Sum_probs=214.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|+++.+++.||||++++..........++.+|+++|+.++|||||+++++|++++.+|||
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            36899999999999999999999999999999999887666666667899999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||| +|+|.+++.+.  +.+++..++.|++||+.||+|||++|||||||||+||||+.+|++||+|||+|+....    
T Consensus        92 mEy~-~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~----  164 (275)
T 3hyh_A           92 IEYA-GNELFDYIVQR--DKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD----  164 (275)
T ss_dssp             EECC-CEEHHHHHHHS--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC---------
T ss_pred             EeCC-CCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCC----
Confidence            9999 78999887765  5799999999999999999999999999999999999999999999999999853210    


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .....+.
T Consensus       165 -------------------------------------------------------------------------~~~~~~~  171 (275)
T 3hyh_A          165 -------------------------------------------------------------------------GNFLKTS  171 (275)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------------------------------------------------------------CCccCCe
Confidence                                                                                     0012346


Q ss_pred             ccCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      +||+.|||||++.+..| +.++|||||||+||||++|+.||.+.+....+.++..+.+.+|.  .++.++++||++||++
T Consensus       172 ~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~~L~~  249 (275)
T 3hyh_A          172 CGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPK--FLSPGAAGLIKRMLIV  249 (275)
T ss_dssp             ---CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCT--TSCHHHHHHHHHHSCS
T ss_pred             eECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHccC
Confidence            89999999999999987 57999999999999999999999987766666667777666664  5899999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||++|||    ++|+++||||+.
T Consensus       250 dP~~R~s----~~eil~hpw~k~  268 (275)
T 3hyh_A          250 NPLNRIS----IHEIMQDDWFKV  268 (275)
T ss_dssp             SGGGSCC----HHHHHHCHHHHT
T ss_pred             ChhHCcC----HHHHHcCccccc
Confidence            9999999    799999999973

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=4.1e-60  Score=526.89  Aligned_cols=256  Identities=27%  Similarity=0.425  Sum_probs=225.7

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|+++++||+|+||+||+|+++.+|+.||||++++.....   .+.+.+|+.||+.|+|||||++|++|++++.+|||
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iV  226 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV  226 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSS---GGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhH---HHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEE
Confidence            367999999999999999999999999999999998654332   34578999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||||+||+|.+++..   +.+++.+++.|++||+.||+|||++|||||||||+||||+.+|++||+|||+|+.+..    
T Consensus       227 mEy~~gG~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~----  299 (423)
T 4fie_A          227 MEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK----  299 (423)
T ss_dssp             EECCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCS----
T ss_pred             EeCCCCCcHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCC----
Confidence            999999999998875   3699999999999999999999999999999999999999999999999999954310    


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              ......++
T Consensus       300 ------------------------------------------------------------------------~~~~~~~~  307 (423)
T 4fie_A          300 ------------------------------------------------------------------------EVPRRKSL  307 (423)
T ss_dssp             ------------------------------------------------------------------------SCCCBCCC
T ss_pred             ------------------------------------------------------------------------CCcccccc
Confidence                                                                                    00122357


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-ccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-LRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      |||+.|||||++.+..|+.++|||||||+||||++|++||.+.+..+.+..|.... ..++....++.++++||.+||++
T Consensus       308 ~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~  387 (423)
T 4fie_A          308 VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVR  387 (423)
T ss_dssp             EECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCS
T ss_pred             ccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999877766666555432 23445567899999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||++|+|    ++|+|+||||+.
T Consensus       388 dP~~R~t----a~ell~Hp~~~~  406 (423)
T 4fie_A          388 DPAQRAT----AAELLKHPFLAK  406 (423)
T ss_dssp             STTTSCC----HHHHTTCGGGGG
T ss_pred             ChhHCcC----HHHHhcCHHhcC
Confidence            9999999    799999999985

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=5.7e-59  Score=494.60  Aligned_cols=255  Identities=24%  Similarity=0.410  Sum_probs=216.9

Q ss_pred             CCe-EEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc----cce
Q 004790          331 SHF-RLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET----DRF  405 (730)
Q Consensus       331 ~~y-~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~----~~~  405 (730)
                      .+| ++.++||+|+||+||+|+++.++..||+|++.+..... ...+++.+|+++|+.|+|||||+++++|++    +..
T Consensus        25 gr~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~  103 (290)
T 3fpq_A           25 GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK-SERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKC  103 (290)
T ss_dssp             SSEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH-HHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEE
T ss_pred             CceEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCH-HHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcE
Confidence            344 78889999999999999999999999999998765433 456779999999999999999999999875    467


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc--eeecccCCccEEecC-CCceEEeccccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG--VVYRDLKPENVLVRD-DGHIMLSDFDLSLR  482 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g--IVHRDLKPeNILl~~-~g~vKL~DFGlA~~  482 (730)
                      +|||||||+||+|.+++.+.  +.+++..++.|+.||+.||+|||++|  ||||||||+||||+. +|++||+|||+|+.
T Consensus       104 ~~lvmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~  181 (290)
T 3fpq_A          104 IVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             EEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             EEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEe
Confidence            89999999999999998765  67999999999999999999999999  999999999999984 79999999999842


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ..                                                                              
T Consensus       182 ~~------------------------------------------------------------------------------  183 (290)
T 3fpq_A          182 KR------------------------------------------------------------------------------  183 (290)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-cCCCCCCCChhHHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-RFPDSPATSYASRDL  641 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-~~p~~~~~s~~~~dL  641 (730)
                      .....+++||+.|||||++.+ .|+.++|||||||+||||++|+.||.+..+...+.+.+.... ....+...+.++++|
T Consensus       184 ~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  262 (290)
T 3fpq_A          184 ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEI  262 (290)
T ss_dssp             TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHH
T ss_pred             CCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCCCCCCCccCCHHHHHH
Confidence            001235699999999999876 599999999999999999999999987766655555443332 222234568899999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |.+||.+||++|||    ++|+|+||||++
T Consensus       263 i~~~L~~dP~~R~s----~~e~l~Hp~~~~  288 (290)
T 3fpq_A          263 IEGCIRQNKDERYS----IKDLLNHAFFQE  288 (290)
T ss_dssp             HHHHSCSSGGGSCC----HHHHHTSGGGC-
T ss_pred             HHHHccCChhHCcC----HHHHhcCccccC
Confidence            99999999999999    799999999985

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=3.6e-59  Score=505.47  Aligned_cols=259  Identities=24%  Similarity=0.314  Sum_probs=222.0

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ..+.|++.++||+|+||+||+|+++.+++.||||++++....        .+|+.+|+.|+|||||++|++|++++.+||
T Consensus        56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~--------~~E~~il~~l~HpnIV~l~~~~~~~~~~~i  127 (336)
T 4g3f_A           56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR--------VEELVACAGLSSPRIVPLYGAVREGPWVNI  127 (336)
T ss_dssp             TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC--------THHHHTTTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             chhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhH--------HHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            346799999999999999999999999999999999875432        469999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC-ceEEecccccccccCCC
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG-HIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g-~vKL~DFGlA~~~~~~~  487 (730)
                      |||||+||+|.+++++.  +.|++..++.|+.||+.||+|||++|||||||||+||||+.+| ++||+|||+|+.+....
T Consensus       128 vmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~  205 (336)
T 4g3f_A          128 FMELLEGGSLGQLIKQM--GCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG  205 (336)
T ss_dssp             EECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred             EEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCC
Confidence            99999999999998765  5799999999999999999999999999999999999999988 69999999996532100


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                      ..                                                                       .......
T Consensus       206 ~~-----------------------------------------------------------------------~~~~~~~  214 (336)
T 4g3f_A          206 LG-----------------------------------------------------------------------KSLLTGD  214 (336)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             cc-----------------------------------------------------------------------cceecCC
Confidence            00                                                                       0001123


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC-CCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP-DSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p-~~~~~s~~~~dLI~~lL  646 (730)
                      +++||+.|||||++.+..|+.++|||||||+||||++|++||.+.+....+.+|..+...++ .++.++.++++||.+||
T Consensus       215 ~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L  294 (336)
T 4g3f_A          215 YIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGL  294 (336)
T ss_dssp             CCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHT
T ss_pred             ccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHc
Confidence            56899999999999999999999999999999999999999999887777777776655432 34578999999999999


Q ss_pred             cCCCCCcCCchhcHHHH-------------HcCCCCCCC
Q 004790          647 VKEPQHRLGVKRGATEI-------------KQHPFFEGV  672 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~el-------------L~HPfF~~v  672 (730)
                      ++||.+|||    +.||             ++|||+...
T Consensus       295 ~~dP~~R~s----a~el~~~l~~~l~~~~~l~hPw~~~~  329 (336)
T 4g3f_A          295 RKEPVHRAS----AMELRRKVGKALQEVGGLKSPWKGEY  329 (336)
T ss_dssp             CSSGGGSCC----HHHHHHHHHHHHHHTTSSCSCSSSSC
T ss_pred             cCCHhHCcC----HHHHHHHHHHHHhhhhhccCCCcCCC
Confidence            999999999    4555             579999764

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-57  Score=503.45  Aligned_cols=263  Identities=23%  Similarity=0.369  Sum_probs=219.4

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc------ccc
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE------TDR  404 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~------~~~  404 (730)
                      ++|++++.||+|+||+||+|+++.+|+.||||++++... ......++.+|+++|+.|+|||||+++++|.      +.+
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~-~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~  132 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFD-VVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK  132 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECcccc-chHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence            689999999999999999999999999999999976543 3345567889999999999999999999865      447


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|||||||+ |+|..++...  +.+++..++.|++||+.||.|||++|||||||||+|||++.+|++||+|||+|+.+.
T Consensus       133 ~~~ivmE~~~-g~L~~~i~~~--~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~  209 (398)
T 4b99_A          133 SVYVVLDLME-SDLHQIIHSS--QPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLC  209 (398)
T ss_dssp             CEEEEEECCS-EEHHHHHTSS--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-
T ss_pred             EEEEEEeCCC-CCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeecc
Confidence            8999999994 7798888764  679999999999999999999999999999999999999999999999999996431


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ....                                                                        ....
T Consensus       210 ~~~~------------------------------------------------------------------------~~~~  217 (398)
T 4b99_A          210 TSPA------------------------------------------------------------------------EHQY  217 (398)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             cCcc------------------------------------------------------------------------cccc
Confidence            1000                                                                        0011


Q ss_pred             cccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccccc----------------
Q 004790          565 RSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR----------------  627 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~----------------  627 (730)
                      ...+++||+.|||||++.+.. |+.++|||||||++|||++|++||.+.+..+++..|+.....                
T Consensus       218 ~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~  297 (398)
T 4b99_A          218 FMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRA  297 (398)
T ss_dssp             CCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHH
T ss_pred             ccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhh
Confidence            234579999999999999865 699999999999999999999999998766666554422111                


Q ss_pred             ----CCC---------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          628 ----FPD---------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       628 ----~p~---------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                          +|.         .+..+.+++|||++||++||.+|+|    |+|+|+||||+...
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t----a~e~L~Hp~f~~~~  352 (398)
T 4b99_A          298 YIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARIS----AAAALRHPFLAKYH  352 (398)
T ss_dssp             HHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCC----HHHHTTSGGGTTTC
T ss_pred             hhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcC----HHHHhcCHhhCcCC
Confidence                111         1356889999999999999999999    79999999999764

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=4.8e-58  Score=489.22  Aligned_cols=270  Identities=25%  Similarity=0.426  Sum_probs=201.9

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc------
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR------  404 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~------  404 (730)
                      ++|++++.||+|+||+||+|+++.+++.||||++++..  .....+++.+|+++|+.|+|||||+++++|.+.+      
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~   82 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN--RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQ   82 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccc
Confidence            57999999999999999999999999999999997653  2344567899999999999999999999987543      


Q ss_pred             ------eeeEEeeecCCCCccccccccCC-CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecc
Q 004790          405 ------FSCLVMEYCPGGDLHTLRQRQPG-KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF  477 (730)
Q Consensus       405 ------~l~LVmEy~~GGsL~~ll~~~~~-~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DF  477 (730)
                            ++|||||||+||+|.+++..... ...++..++.|+.||+.||+|||++|||||||||+||||+.+|++||+||
T Consensus        83 ~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DF  162 (299)
T 4g31_A           83 PSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDF  162 (299)
T ss_dssp             ----CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC
T ss_pred             ccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccC
Confidence                  47999999999999998876421 23445668899999999999999999999999999999999999999999


Q ss_pred             cccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccc
Q 004790          478 DLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPEL  557 (730)
Q Consensus       478 GlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (730)
                      |+|+.+.........                                                                .
T Consensus       163 Gla~~~~~~~~~~~~----------------------------------------------------------------~  178 (299)
T 4g31_A          163 GLVTAMDQDEEEQTV----------------------------------------------------------------L  178 (299)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             ccceecCCCcccccc----------------------------------------------------------------c
Confidence            999654211100000                                                                0


Q ss_pred             ccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc-ceeeeecccccCCC-CCCCC
Q 004790          558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA-TLFNVVGQQLRFPD-SPATS  635 (730)
Q Consensus       558 ~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~-~l~~i~~~~~~~p~-~~~~s  635 (730)
                      .......+..+.+||+.|||||++.+..|+.++|||||||+||||++   ||.+..+.. .+..+.  ...+|. ....+
T Consensus       179 ~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~~~~~~~--~~~~p~~~~~~~  253 (299)
T 4g31_A          179 TPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTLTDVR--NLKFPPLFTQKY  253 (299)
T ss_dssp             -------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHH--TTCCCHHHHHHC
T ss_pred             cccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHHHHHHHHh--cCCCCCCCcccC
Confidence            00001123356799999999999999999999999999999999996   886532221 111221  122221 12345


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      ..+++||++||++||++||+    +.|+++||||++++|.
T Consensus       254 ~~~~~li~~~L~~dP~~Rps----~~eil~h~~~~~~~~p  289 (299)
T 4g31_A          254 PCEYVMVQDMLSPSPMERPE----AINIIENAVFEDLDFP  289 (299)
T ss_dssp             HHHHHHHHHHTCSSGGGSCC----HHHHHTSGGGCCC---
T ss_pred             HHHHHHHHHHcCCChhHCcC----HHHHhcCHhhCCCCCC
Confidence            67789999999999999999    7999999999999984

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=5.5e-57  Score=530.04  Aligned_cols=284  Identities=34%  Similarity=0.646  Sum_probs=250.6

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccce
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRF  405 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~  405 (730)
                      .+.+++|++++.||+|+||+||+|+++.+++.||||++++...........+.+|+.+|..+ +||||++++++|++...
T Consensus       337 ~~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~  416 (674)
T 3pfq_A          337 RMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR  416 (674)
T ss_dssp             ---CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSE
T ss_pred             cccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCE
Confidence            45678999999999999999999999999999999999987655555667788999999987 79999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +||||||++||+|..+++..  +.+++..+++|++||+.||+|||++|||||||||+||||+.+|++||+|||+++....
T Consensus       417 ~~lV~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~  494 (674)
T 3pfq_A          417 LYFVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW  494 (674)
T ss_dssp             EEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECCC
T ss_pred             EEEEEeCcCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeecccc
Confidence            99999999999999988865  5799999999999999999999999999999999999999999999999999853110


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                                                                                                  ....
T Consensus       495 ----------------------------------------------------------------------------~~~~  498 (674)
T 3pfq_A          495 ----------------------------------------------------------------------------DGVT  498 (674)
T ss_dssp             ----------------------------------------------------------------------------TTCC
T ss_pred             ----------------------------------------------------------------------------CCcc
Confidence                                                                                        0011


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ..+++||+.|+|||++.+..|+.++|||||||+||||++|+.||.+.+..+.+.+|+...+.+|.  .++.++++||++|
T Consensus       499 ~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~l  576 (674)
T 3pfq_A          499 TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPK--SMSKEAVAICKGL  576 (674)
T ss_dssp             BCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCCCCCT--TSCHHHHHHHHHH
T ss_pred             cccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCc--cCCHHHHHHHHHH
Confidence            23568999999999999999999999999999999999999999998887888888888877775  5899999999999


Q ss_pred             hcCCCCCcCCc-hhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCC
Q 004790          646 LVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPME  690 (730)
Q Consensus       646 L~~DP~~R~t~-~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~  690 (730)
                      |.+||.+|+++ .++++||++||||+++||..+  +...||++|....
T Consensus       577 L~~dP~~R~~~~~~~~~ei~~h~ff~~i~w~~l~~~~~~pp~~p~~~~  624 (674)
T 3pfq_A          577 MTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKPKASG  624 (674)
T ss_dssp             SCSSSTTCTTCSTTHHHHHHSSGGGSSCCHHHHTTTCSCCSCCCBCCG
T ss_pred             ccCCHHHCCCCCCCcHHHHhcCccccCCCHHHHHhCCCCCCCCCcCCC
Confidence            99999999997 456799999999999999987  4567888887654

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=4.1e-57  Score=521.87  Aligned_cols=261  Identities=28%  Similarity=0.422  Sum_probs=232.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +++|++++.||+|+||+||+|+++.+|+.||||++.+...   ...+.+++|+++|+.|+|||||+|+++|+++..+|||
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~---~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv  232 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE---SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  232 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH---HHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccch---hhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            5789999999999999999999999999999999977543   2345688999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC--CceEEecccccccccCCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD--GHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~--g~vKL~DFGlA~~~~~~~  487 (730)
                      ||||+||+|.+++... ...|++.+++.|++||+.||+|||++||+||||||+||||+.+  |++||+|||+|+.+..  
T Consensus       233 ~E~~~gg~L~~~i~~~-~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~--  309 (573)
T 3uto_A          233 YEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP--  309 (573)
T ss_dssp             EECCCCCBHHHHHTCT-TSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCT--
T ss_pred             EeecCCCcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccC--
Confidence            9999999999887643 3579999999999999999999999999999999999999854  8999999999964310  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       310 ---------------------------------------------------------------------------~~~~~  314 (573)
T 3uto_A          310 ---------------------------------------------------------------------------KQSVK  314 (573)
T ss_dssp             ---------------------------------------------------------------------------TSEEE
T ss_pred             ---------------------------------------------------------------------------CCcee
Confidence                                                                                       00123


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHHHHHhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRDLIRGL  645 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~dLI~~l  645 (730)
                      +++||+.|||||++.+..|+.++|||||||+||||++|++||.+.+..+++.+|....+.++.  ...++.+++|||++|
T Consensus       315 ~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~  394 (573)
T 3uto_A          315 VTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKL  394 (573)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTT
T ss_pred             eeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHH
Confidence            568999999999999999999999999999999999999999998888888888777666554  356899999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      |++||.+||+    ++|+|+||||+..+|.
T Consensus       395 L~~dp~~R~t----~~e~l~Hpw~~~~~~~  420 (573)
T 3uto_A          395 LLADPNTRMT----IHQALEHPWLTPGNAP  420 (573)
T ss_dssp             SCSSGGGSCC----HHHHHHSTTTSCCCCT
T ss_pred             ccCChhHCcC----HHHHhcCcCcCCCCCC
Confidence            9999999999    7999999999998875

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.5e-56  Score=484.14  Aligned_cols=286  Identities=36%  Similarity=0.680  Sum_probs=247.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      +.+++|++++.||+|+||+||+|+++.+++.||||++++...........+.+|+.+|+.+ +||||++++++|++...+
T Consensus        20 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~   99 (353)
T 3txo_A           20 LGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRL   99 (353)
T ss_dssp             ---CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             CchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEE
Confidence            5678999999999999999999999999999999999987666666677889999999988 799999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |||||||+||+|..++.+.  +.+++..+++|++||+.||+|||++|||||||||+||||+.+|++||+|||+++.... 
T Consensus       100 ~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~-  176 (353)
T 3txo_A          100 FFVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC-  176 (353)
T ss_dssp             EEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeeccc-
Confidence            9999999999999988765  5799999999999999999999999999999999999999999999999999843100 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       177 ---------------------------------------------------------------------------~~~~~  181 (353)
T 3txo_A          177 ---------------------------------------------------------------------------NGVTT  181 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------------------------------------------CCccc
Confidence                                                                                       00112


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      .+++||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+..+.+.++....+.+|.  .++.++++||++||
T Consensus       182 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~lL  259 (353)
T 3txo_A          182 ATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPT--WLHEDATGILKSFM  259 (353)
T ss_dssp             ----CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHT
T ss_pred             cccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHh
Confidence            3568999999999999999999999999999999999999999998877777788887777764  47899999999999


Q ss_pred             cCCCCCcCCc--hhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCcCC
Q 004790          647 VKEPQHRLGV--KRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEAEL  693 (730)
Q Consensus       647 ~~DP~~R~t~--~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~~~  693 (730)
                      .+||.+|+++  ..+++++++||||++++|..+  +...||+.|.......
T Consensus       260 ~~dP~~R~~~~~~~~~~~il~hp~f~~~~w~~l~~~~~~~p~~p~~~~~~~  310 (353)
T 3txo_A          260 TKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQLNHRQIEPPFRPRIKSRED  310 (353)
T ss_dssp             CSSGGGSTTSGGGTCTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCSTTC
T ss_pred             hhCHHHccCCcccCCHHHHhhCCcccCCCHHHHhcCcCCCCccCCCCCccc
Confidence            9999999996  345699999999999999987  5667888887544433

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=7.3e-56  Score=484.20  Aligned_cols=282  Identities=23%  Similarity=0.365  Sum_probs=209.9

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEEC---CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccce
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELS---STRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRF  405 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~---~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~  405 (730)
                      .++|+++++||+|+||+||+|+++   .+++.||||++.+...     ..++.+|+++|+.+ +||||++++++|+++++
T Consensus        20 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~-----~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~   94 (361)
T 4f9c_A           20 SNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSH-----PIRIAAELQCLTVAGGQDNVMGVKYCFRKNDH   94 (361)
T ss_dssp             GGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSC-----HHHHHHHHHHHHHTCSBTTBCCCSEEEEETTE
T ss_pred             cCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccC-----HHHHHHHHHHHHHhcCCCCCceEEEEEEECCE
Confidence            367999999999999999999875   4688999999876532     23577899999988 79999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC-CceEEeccccccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD-GHIMLSDFDLSLRCA  484 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~-g~vKL~DFGlA~~~~  484 (730)
                      +|||||||+||+|.+++.     .+++.+++.|++||+.||+|||++|||||||||+||||+.+ +++||+|||+|+...
T Consensus        95 ~~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~  169 (361)
T 4f9c_A           95 VVIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTH  169 (361)
T ss_dssp             EEEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECT
T ss_pred             EEEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccC
Confidence            999999999999999874     48999999999999999999999999999999999999876 899999999997643


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ......... ....                 .....|.+..|.                              .......
T Consensus       170 ~~~~~~~~~-~~~~-----------------~~~~~~~~~~~~------------------------------~~~~~~~  201 (361)
T 4f9c_A          170 DTKIELLKF-VQSE-----------------AQQERCSQNKCS------------------------------ICLSRRQ  201 (361)
T ss_dssp             TCSCGGGGG-C---------------------------------------------------------------------
T ss_pred             Ccccccccc-cccc-----------------cccccccccccc------------------------------ccccccc
Confidence            221110000 0000                 000000000000                              0000112


Q ss_pred             cccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeeec-------------------
Q 004790          565 RSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVG-------------------  623 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~~-------------------  623 (730)
                      ...+.+||+.|||||++.+.. |+.++||||+||++|||++|+.||.+..+. +++..|..                   
T Consensus       202 ~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~  281 (361)
T 4f9c_A          202 QVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSIL  281 (361)
T ss_dssp             ----CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEE
T ss_pred             cccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhcCCccchhhhhhcccccc
Confidence            334679999999999998864 899999999999999999999999654432 22211110                   


Q ss_pred             ---------------------------------ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          624 ---------------------------------QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       624 ---------------------------------~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                                                       .....+.+..++.+++|||++||++||.+|+|    |+|+|+||||+
T Consensus       282 ~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~t----a~eaL~Hp~f~  357 (361)
T 4f9c_A          282 CSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRIT----AEEALLHPFFK  357 (361)
T ss_dssp             ESSCCCCCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSCC----HHHHHTSGGGT
T ss_pred             ccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcC----HHHHhcCcccC
Confidence                                             00111223567899999999999999999999    89999999999


Q ss_pred             CCC
Q 004790          671 GVN  673 (730)
Q Consensus       671 ~v~  673 (730)
                      +++
T Consensus       358 ~i~  360 (361)
T 4f9c_A          358 DMS  360 (361)
T ss_dssp             TC-
T ss_pred             CCC
Confidence            875

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=3.8e-55  Score=484.09  Aligned_cols=285  Identities=36%  Similarity=0.705  Sum_probs=241.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      +.+++|++++.||+|+||+||+|+++.+++.||||++++...........+++|+.+|+.+ +||||++++++|+++..+
T Consensus        49 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~  128 (396)
T 4dc2_A           49 LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRL  128 (396)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEE
Confidence            5678999999999999999999999999999999999987766666677789999999877 899999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |||||||+||+|..++.+.  +.+++..+++|++||+.||+|||++|||||||||+||||+.+|++||+|||+++.... 
T Consensus       129 ~lV~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~-  205 (396)
T 4dc2_A          129 FFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR-  205 (396)
T ss_dssp             EEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC-
T ss_pred             EEEEEcCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeeccc-
Confidence            9999999999999888765  5799999999999999999999999999999999999999999999999999843100 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       206 ---------------------------------------------------------------------------~~~~~  210 (396)
T 4dc2_A          206 ---------------------------------------------------------------------------PGDTT  210 (396)
T ss_dssp             ---------------------------------------------------------------------------TTCCB
T ss_pred             ---------------------------------------------------------------------------CCCcc
Confidence                                                                                       00112


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc---------ceeeeecccccCCCCCCCChh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA---------TLFNVVGQQLRFPDSPATSYA  637 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~---------~l~~i~~~~~~~p~~~~~s~~  637 (730)
                      .+++||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.....         ....+....+.+|.  .++.+
T Consensus       211 ~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~--~~s~~  288 (396)
T 4dc2_A          211 STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPR--SLSVK  288 (396)
T ss_dssp             CCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCT--TSCHH
T ss_pred             ccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCC--cCCHH
Confidence            35689999999999999999999999999999999999999997543211         22234445555554  57999


Q ss_pred             HHHHHHhhhcCCCCCcCCch--hcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCcC
Q 004790          638 SRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEAE  692 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~--~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~~  692 (730)
                      +++||++||.+||.+|+++.  .+++||++||||++++|..+  +...||++|......
T Consensus       289 ~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~i~w~~l~~~~~~pp~~p~~~~~~  347 (396)
T 4dc2_A          289 AASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEF  347 (396)
T ss_dssp             HHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTTCCHHHHHTTCSCCSCCCCCCSST
T ss_pred             HHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccCCCHHHHHcCCCCCCCcCCCCCcc
Confidence            99999999999999999964  45799999999999999987  456788888765443

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=7.7e-55  Score=470.71  Aligned_cols=290  Identities=38%  Similarity=0.673  Sum_probs=249.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +.+++|++++.||+|+||+||+|+++.+++.||||++++...........+.+|+.+|+.++||||++++++|++...+|
T Consensus         2 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~   81 (337)
T 1o6l_A            2 VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             CChHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEE
Confidence            45689999999999999999999999999999999998876555555677889999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      |||||++||+|..++.+.  +.+++..+++|++||+.||+|||++||+||||||+|||++.+|++||+|||+++....  
T Consensus        82 lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~--  157 (337)
T 1o6l_A           82 FVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS--  157 (337)
T ss_dssp             EEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC--
T ss_pred             EEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhccc--
Confidence            999999999999888765  5799999999999999999999999999999999999999999999999999843100  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                ......
T Consensus       158 --------------------------------------------------------------------------~~~~~~  163 (337)
T 1o6l_A          158 --------------------------------------------------------------------------DGATMK  163 (337)
T ss_dssp             --------------------------------------------------------------------------TTCCBC
T ss_pred             --------------------------------------------------------------------------CCCccc
Confidence                                                                                      001123


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +++||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+....+..+....+.+|.  .++.++++||++||.
T Consensus       164 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~lL~  241 (337)
T 1o6l_A          164 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPR--TLSPEAKSLLAGLLK  241 (337)
T ss_dssp             CCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHTC
T ss_pred             ccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHhh
Confidence            468999999999999999999999999999999999999999987766666666666666664  579999999999999


Q ss_pred             CCCCCcCCch-hcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCcCCCCCC
Q 004790          648 KEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEAELPGKF  697 (730)
Q Consensus       648 ~DP~~R~t~~-~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~~~p~~~  697 (730)
                      +||.+|++.. ..++++++||||++++|..+  +...||+.|..........|
T Consensus       242 ~dP~~R~g~~~~~~~ei~~h~~f~~~~~~~~~~~~~~pp~~p~~~~~~d~~~f  294 (337)
T 1o6l_A          242 KDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDTRYF  294 (337)
T ss_dssp             SSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCSSTTCCTTS
T ss_pred             cCHHHhcCCCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCCCCCCCCcchhhcc
Confidence            9999999431 24899999999999999977  45678888876554444444

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=4.3e-55  Score=485.57  Aligned_cols=293  Identities=35%  Similarity=0.635  Sum_probs=252.1

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      ...+..++|++++.||+|+||+||+|+++.+++.||||++++...........+.+|+.+|+.++||||++++++|+++.
T Consensus        63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~  142 (410)
T 3v8s_A           63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR  142 (410)
T ss_dssp             HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence            34467789999999999999999999999999999999998865544444456789999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|||||||+||+|..++...   .+++..+++|++||+.||+|||++|||||||||+||||+.+|++||+|||+++...
T Consensus       143 ~~~lV~E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~  219 (410)
T 3v8s_A          143 YLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMN  219 (410)
T ss_dssp             EEEEEECCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeec
Confidence            999999999999999988753   69999999999999999999999999999999999999999999999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                           ...
T Consensus       220 ~~---------------------------------------------------------------------------~~~  224 (410)
T 3v8s_A          220 KE---------------------------------------------------------------------------GMV  224 (410)
T ss_dssp             TT---------------------------------------------------------------------------SEE
T ss_pred             cC---------------------------------------------------------------------------Ccc
Confidence            00                                                                           001


Q ss_pred             cccccccCcccCChhhhccCC----CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc--cccCCCCCCCChhH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEG----HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--QLRFPDSPATSYAS  638 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~----~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~--~~~~p~~~~~s~~~  638 (730)
                      ...+.+||+.|+|||++.+..    |+.++|||||||+||||++|+.||.+.+....+.+|+..  .+.+|....++.++
T Consensus       225 ~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~  304 (410)
T 3v8s_A          225 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEA  304 (410)
T ss_dssp             ECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCCCHHH
T ss_pred             cccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCCcccccHHH
Confidence            223568999999999998876    789999999999999999999999988777777777654  35677777899999


Q ss_pred             HHHHHhhhcCCCCC--cCCchhcHHHHHcCCCCCCCCcch--hccCCCCCCCCCCCcCCCCCCCC
Q 004790          639 RDLIRGLLVKEPQH--RLGVKRGATEIKQHPFFEGVNWAL--IRCSTPPEVPRPMEAELPGKFGA  699 (730)
Q Consensus       639 ~dLI~~lL~~DP~~--R~t~~~~a~elL~HPfF~~v~w~~--~r~~~pp~~p~p~~~~~p~~~~~  699 (730)
                      ++||++||..+|.+  |++    ++||++||||++++|..  .+...||++|..........|+.
T Consensus       305 ~~li~~lL~~~~~rlgR~~----~~ei~~Hp~f~~~~w~~~~~~~~~~p~~p~~~~~~d~~~fd~  365 (410)
T 3v8s_A          305 KNLICAFLTDREVRLGRNG----VEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDIDTSNFDD  365 (410)
T ss_dssp             HHHHHHHSSCGGGCTTSSC----HHHHHTSGGGCCSSCCSTTGGGSCCSCCCCCSSTTCCTTSCC
T ss_pred             HHHHHHHccChhhhCCCCC----HHHHhcCccccCCCHHHHhhcccCCCCCCcCCCccchhhcCC
Confidence            99999999988888  888    79999999999999874  47788999998766555555544

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.7e-55  Score=484.36  Aligned_cols=300  Identities=36%  Similarity=0.638  Sum_probs=249.9

Q ss_pred             hhhcCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 004790          321 IRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF  400 (730)
Q Consensus       321 ~~~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f  400 (730)
                      ...+...+..++|++++.||+|+||+||+|+++.+++.||||++++...........+.+|+.+|..++||||++++++|
T Consensus        51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  130 (412)
T 2vd5_A           51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF  130 (412)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence            34445557789999999999999999999999999999999999887655555556788999999999999999999999


Q ss_pred             cccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          401 ETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       401 ~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      +++..+|||||||+||+|..++.+. +..+++..+++|++||+.||+|||++|||||||||+||||+.+|++||+|||++
T Consensus       131 ~~~~~~~lVmE~~~gg~L~~~l~~~-~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla  209 (412)
T 2vd5_A          131 QDENYLYLVMEYYVGGDLLTLLSKF-GERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSC  209 (412)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             eeCCEEEEEEcCCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhh
Confidence            9999999999999999999988764 247999999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +.....                                                                          
T Consensus       210 ~~~~~~--------------------------------------------------------------------------  215 (412)
T 2vd5_A          210 LKLRAD--------------------------------------------------------------------------  215 (412)
T ss_dssp             EECCTT--------------------------------------------------------------------------
T ss_pred             eeccCC--------------------------------------------------------------------------
Confidence            542100                                                                          


Q ss_pred             cccccccccccCcccCChhhhc-------cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc--ccCCC-
Q 004790          561 PTAARSMSFVGTHEYLAPEIIK-------GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ--LRFPD-  630 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~-------g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~--~~~p~-  630 (730)
                       ........+||+.|+|||++.       +..|+.++|||||||++|||++|+.||.+.+....+.+|+...  +.+|. 
T Consensus       216 -~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~  294 (412)
T 2vd5_A          216 -GTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLV  294 (412)
T ss_dssp             -SCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC--
T ss_pred             -CccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCcc
Confidence             001123468999999999998       3568999999999999999999999999887777766666533  44443 


Q ss_pred             CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCCcCCCCCCC
Q 004790          631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFG  698 (730)
Q Consensus       631 ~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~~~~p~~~~  698 (730)
                      ...++.++++||++||. +|.+|++ ..+++|+++||||++++|..++...||++|..........|+
T Consensus       295 ~~~~s~~~~dli~~lL~-~p~~Rlg-r~~~~ei~~Hpff~~i~w~~l~~~~~p~~p~~~~~~d~~~f~  360 (412)
T 2vd5_A          295 DEGVPEEARDFIQRLLC-PPETRLG-RGGAGDFRTHPFFFGLDWDGLRDSVPPFTPDFEGATDTCNFD  360 (412)
T ss_dssp             --CCCHHHHHHHHTTSS-CGGGCTT-TTTHHHHHTSGGGTTCCSTTSTTSCCSCCCC-----CCSSCC
T ss_pred             ccCCCHHHHHHHHHHcC-ChhhcCC-CCCHHHHhcCCCcCCCCHHHHhhcCCCCCCcCCCcccccccC
Confidence            24689999999999999 9999975 235899999999999999999988999998865544444443

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=4.8e-55  Score=489.09  Aligned_cols=298  Identities=33%  Similarity=0.600  Sum_probs=253.3

Q ss_pred             hhcCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc
Q 004790          322 RARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE  401 (730)
Q Consensus       322 ~~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~  401 (730)
                      ..+...+..++|+++++||+|+||+||+|+++.+++.||||++++...........+.+|+.+|..++||||++++++|+
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            34444567789999999999999999999999999999999998765544444455889999999999999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      ++..+|||||||+||+|..++.+. ...+++..+++|++||+.||+|||++|||||||||+||||+.+|++||+|||+|+
T Consensus       145 ~~~~~~lV~Ey~~gg~L~~~l~~~-~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~  223 (437)
T 4aw2_A          145 DDNNLYLVMDYYVGGDLLTLLSKF-EDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCL  223 (437)
T ss_dssp             CSSEEEEEECCCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             eCCEEEEEEecCCCCcHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhh
Confidence            999999999999999999988763 3579999999999999999999999999999999999999999999999999985


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      .....                                                                           
T Consensus       224 ~~~~~---------------------------------------------------------------------------  228 (437)
T 4aw2_A          224 KLMED---------------------------------------------------------------------------  228 (437)
T ss_dssp             ECCTT---------------------------------------------------------------------------
T ss_pred             hcccC---------------------------------------------------------------------------
Confidence            42100                                                                           


Q ss_pred             ccccccccccCcccCChhhhc-----cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc--ccCCCC-CC
Q 004790          562 TAARSMSFVGTHEYLAPEIIK-----GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ--LRFPDS-PA  633 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~-----g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~--~~~p~~-~~  633 (730)
                      ........+||+.|+|||++.     ...|+.++|||||||++|||++|+.||.+.+..+.+.+++...  +.+|.. ..
T Consensus       229 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~  308 (437)
T 4aw2_A          229 GTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTD  308 (437)
T ss_dssp             SCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCC
T ss_pred             CCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccCCccccc
Confidence            001122458999999999998     4568999999999999999999999999887777777776543  445543 45


Q ss_pred             CChhHHHHHHhhhcCCCCC--cCCchhcHHHHHcCCCCCCCCcchhccCCCCCCCCCCCcCCCCCCCC
Q 004790          634 TSYASRDLIRGLLVKEPQH--RLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPGKFGA  699 (730)
Q Consensus       634 ~s~~~~dLI~~lL~~DP~~--R~t~~~~a~elL~HPfF~~v~w~~~r~~~pp~~p~p~~~~~p~~~~~  699 (730)
                      ++.++++||++||..+|++  |++    ++|+++||||++++|..++...||++|..........|+.
T Consensus       309 ~s~~~~dLi~~lL~~~~~r~~r~~----~~eil~Hpff~~i~w~~l~~~~~p~~P~~~~~~d~~~fd~  372 (437)
T 4aw2_A          309 VSENAKDLIRRLICSREHRLGQNG----IEDFKKHPFFSGIDWDNIRNCEAPYIPEVSSPTDTSNFDV  372 (437)
T ss_dssp             SCHHHHHHHHTTSSCGGGCTTTTT----THHHHTSGGGTTCCTTTGGGSCCSCCCCCSSTTCCTTSCC
T ss_pred             CCHHHHHHHHHHhcccccccCCCC----HHHHhCCCccCCCCHHHHhhCCCCCCCcCCCccchhhcCC
Confidence            8999999999999998887  888    6899999999999999999999999998766555555543

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=4.2e-54  Score=467.02  Aligned_cols=289  Identities=36%  Similarity=0.643  Sum_probs=252.6

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      ...+++|++++.||+|+||+||+|+++.+++.||||++++...........+.+|+++|+.++||||++++++|+++..+
T Consensus        37 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  116 (350)
T 1rdq_E           37 TAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNL  116 (350)
T ss_dssp             CCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             CCCHHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEE
Confidence            35678999999999999999999999999999999999887655555567789999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      ||||||++||+|..++.+.  +.+++..++.|+.||+.||+|||++||+||||||+||||+.+|++||+|||+++...  
T Consensus       117 ~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~--  192 (350)
T 1rdq_E          117 YMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--  192 (350)
T ss_dssp             EEEEECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECS--
T ss_pred             EEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceecc--
Confidence            9999999999999988765  569999999999999999999999999999999999999999999999999985321  


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       193 -----------------------------------------------------------------------------~~~  195 (350)
T 1rdq_E          193 -----------------------------------------------------------------------------GRT  195 (350)
T ss_dssp             -----------------------------------------------------------------------------SCB
T ss_pred             -----------------------------------------------------------------------------CCc
Confidence                                                                                         011


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      .+.+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+....+.++....+.+|.  .++.++++||++||
T Consensus       196 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~lL  273 (350)
T 1rdq_E          196 WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPS--HFSSDLKDLLRNLL  273 (350)
T ss_dssp             CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TCCHHHHHHHHHHS
T ss_pred             ccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHh
Confidence            2458999999999999999999999999999999999999999987776777777777766664  57999999999999


Q ss_pred             cCCCCCcCCc-hhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCcCCCCCCC
Q 004790          647 VKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEAELPGKFG  698 (730)
Q Consensus       647 ~~DP~~R~t~-~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~~~p~~~~  698 (730)
                      ..||.+|++. ..++++|++||||++++|..+  +...||++|..........|.
T Consensus       274 ~~dp~~R~~~~~~~~~ei~~h~~f~~~~w~~~~~~~~~~p~~p~~~~~~~~~~f~  328 (350)
T 1rdq_E          274 QVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFD  328 (350)
T ss_dssp             CSCTTTCTTSSTTTTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCSTTCCTTSC
T ss_pred             hcCHHhccCCccCCHHHHHhCcCcCCCCHHHHhhccCCCCCCCCCCCcccccccc
Confidence            9999999983 455799999999999999876  466788888765544444443

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=3.2e-54  Score=466.71  Aligned_cols=283  Identities=37%  Similarity=0.712  Sum_probs=242.0

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      +.+++|++++.||+|+||+||+|+++.+++.||||++++...........+.+|+.+|+.+ +||||++++++|+++..+
T Consensus         6 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~   85 (345)
T 3a8x_A            6 LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRL   85 (345)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             CchhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEE
Confidence            5678999999999999999999999999999999999987766667778899999999987 899999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      ||||||++||+|..++.+.  +.+++..++.|++||+.||+|||++||+||||||+||||+.+|++||+|||+++.... 
T Consensus        86 ~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~-  162 (345)
T 3a8x_A           86 FFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR-  162 (345)
T ss_dssp             EEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC-
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccccccccC-
Confidence            9999999999999988765  5799999999999999999999999999999999999999999999999999843100 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       163 ---------------------------------------------------------------------------~~~~~  167 (345)
T 3a8x_A          163 ---------------------------------------------------------------------------PGDTT  167 (345)
T ss_dssp             ---------------------------------------------------------------------------TTCCB
T ss_pred             ---------------------------------------------------------------------------CCCcc
Confidence                                                                                       00012


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc---------cceeeeecccccCCCCCCCChh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR---------ATLFNVVGQQLRFPDSPATSYA  637 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~---------~~l~~i~~~~~~~p~~~~~s~~  637 (730)
                      .+++||+.|+|||++.+..|+.++|||||||++|||++|+.||......         .....+......+|  ..++.+
T Consensus       168 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p--~~~s~~  245 (345)
T 3a8x_A          168 STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIP--RSLSVK  245 (345)
T ss_dssp             CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCC--TTSCHH
T ss_pred             cccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCC--CCCCHH
Confidence            3468999999999999999999999999999999999999999763211         12223444555555  367999


Q ss_pred             HHHHHHhhhcCCCCCcCCch--hcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCC
Q 004790          638 SRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALI--RCSTPPEVPRPME  690 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~--~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~  690 (730)
                      +++||.+||.+||.+||++.  .+++++++||||++++|..+  +...||+.|....
T Consensus       246 ~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~~~w~~~~~~~~~~p~~p~~~~  302 (345)
T 3a8x_A          246 AASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISG  302 (345)
T ss_dssp             HHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCT
T ss_pred             HHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCCCCHHHHHhCCCCCCcCCCCCC
Confidence            99999999999999999963  45789999999999999977  4556777776543

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=1.2e-54  Score=475.77  Aligned_cols=286  Identities=38%  Similarity=0.660  Sum_probs=239.8

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHH-HHhcCCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI-LQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~I-L~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      +..++|++++.||+|+||+||+|+++.+++.||||++++...........+.+|..+ ++.++||||++++++|++.+.+
T Consensus        35 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~  114 (373)
T 2r5t_A           35 AKPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKL  114 (373)
T ss_dssp             CCGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEE
T ss_pred             CChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEE
Confidence            456889999999999999999999999999999999998876665666677888887 5678999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      ||||||++||+|..++.+.  +.+++..+++|++||+.||+|||++||+||||||+||||+.+|++||+|||+++.... 
T Consensus       115 ~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~-  191 (373)
T 2r5t_A          115 YFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE-  191 (373)
T ss_dssp             EEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC-
T ss_pred             EEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCcccccccc-
Confidence            9999999999999988765  5799999999999999999999999999999999999999999999999999853110 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       192 ---------------------------------------------------------------------------~~~~~  196 (373)
T 2r5t_A          192 ---------------------------------------------------------------------------HNSTT  196 (373)
T ss_dssp             ---------------------------------------------------------------------------CCCCC
T ss_pred             ---------------------------------------------------------------------------CCCcc
Confidence                                                                                       00012


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      .+++||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+....+.+++...+.++  ..++.++++||.+||
T Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~li~~lL  274 (373)
T 2r5t_A          197 STFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLK--PNITNSARHLLEGLL  274 (373)
T ss_dssp             CSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSCCCCC--SSSCHHHHHHHHHHT
T ss_pred             ccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcccCCC--CCCCHHHHHHHHHHc
Confidence            346899999999999999999999999999999999999999998777777777777766665  457999999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCcCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEAEL  693 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~~~  693 (730)
                      .+||.+|+++.+++.++++||||++++|..+  +...||++|.......
T Consensus       275 ~~dp~~R~~~~~~~~~i~~h~~f~~~~w~~l~~~~~~pp~~p~~~~~~d  323 (373)
T 2r5t_A          275 QKDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKITPPFNPNVSGPND  323 (373)
T ss_dssp             CSSGGGSTTTTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCSCCC---
T ss_pred             ccCHHhCCCCCCCHHHHhCCccccCCCHHHHHhCCCCCCCCCCCCCcch
Confidence            9999999998888899999999999999977  5667888887654433

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=2.3e-54  Score=470.11  Aligned_cols=283  Identities=34%  Similarity=0.651  Sum_probs=248.0

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      +..++|++++.||+|+||+||+|+++.+++.||||++++...........+.+|+.+|..+ +||||++++++|++...+
T Consensus        17 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~   96 (353)
T 2i0e_A           17 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL   96 (353)
T ss_dssp             --CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEE
T ss_pred             CchHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEE
Confidence            5678999999999999999999999999999999999887655555567788999999987 899999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      ||||||++||+|..++...  +.+++..+++|++||+.||+|||++|||||||||+||||+.+|++||+|||+++.... 
T Consensus        97 ~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~-  173 (353)
T 2i0e_A           97 YFVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW-  173 (353)
T ss_dssp             EEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC-
T ss_pred             EEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCccccccc-
Confidence            9999999999999988765  5799999999999999999999999999999999999999999999999999843100 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       174 ---------------------------------------------------------------------------~~~~~  178 (353)
T 2i0e_A          174 ---------------------------------------------------------------------------DGVTT  178 (353)
T ss_dssp             ---------------------------------------------------------------------------TTCCB
T ss_pred             ---------------------------------------------------------------------------CCccc
Confidence                                                                                       00012


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      .+++||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+....+.++....+.+|.  .++.++++||++||
T Consensus       179 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~lL  256 (353)
T 2i0e_A          179 KTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPK--SMSKEAVAICKGLM  256 (353)
T ss_dssp             CCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHT
T ss_pred             ccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHHh
Confidence            3468999999999999999999999999999999999999999988777777777777777664  67999999999999


Q ss_pred             cCCCCCcCCc-hhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCC
Q 004790          647 VKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPME  690 (730)
Q Consensus       647 ~~DP~~R~t~-~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~  690 (730)
                      .+||.+||+. ..++++|++||||++++|..+  +...||++|....
T Consensus       257 ~~dP~~R~~~~~~~~~~i~~h~~f~~~~w~~l~~~~~~~p~~p~~~~  303 (353)
T 2i0e_A          257 TKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKPKACG  303 (353)
T ss_dssp             CSCTTSCTTCSTTHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCC
T ss_pred             hcCHHHcCCCCCCCHHHHhcCccccCCCHHHHHhCCCCCCcCCCCCC
Confidence            9999999986 346899999999999999987  5667888887544

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=9.9e-55  Score=471.57  Aligned_cols=280  Identities=37%  Similarity=0.717  Sum_probs=237.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      +..++|++++.||+|+||+||+|+++.+++.||||++++...........+.+|+.+|+.+ +||||++++++|++...+
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            5678999999999999999999999999999999999887654445566788999999876 999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |||||||+||+|..++...  +.+++..+++|+.||+.||+|||++||+||||||+||||+.+|++||+|||+++.... 
T Consensus        94 ~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~-  170 (345)
T 1xjd_A           94 FFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENML-  170 (345)
T ss_dssp             EEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC-
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhccc-
Confidence            9999999999999988764  5799999999999999999999999999999999999999999999999999843100 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       171 ---------------------------------------------------------------------------~~~~~  175 (345)
T 1xjd_A          171 ---------------------------------------------------------------------------GDAKT  175 (345)
T ss_dssp             ---------------------------------------------------------------------------TTCCB
T ss_pred             ---------------------------------------------------------------------------CCCcc
Confidence                                                                                       00112


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      .+++||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+....+.++......+|.  .++.++++||.+||
T Consensus       176 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~lL  253 (345)
T 1xjd_A          176 NTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPR--WLEKEAKDLLVKLF  253 (345)
T ss_dssp             CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHS
T ss_pred             cCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCCCCCc--ccCHHHHHHHHHHh
Confidence            3568999999999999999999999999999999999999999987776666666666666654  57899999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPME  690 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~  690 (730)
                      ..||.+||++.   .+|++||||++++|..+  +...||+.|....
T Consensus       254 ~~dp~~R~~~~---~~i~~hp~f~~~~w~~l~~~~~~~p~~p~~~~  296 (345)
T 1xjd_A          254 VREPEKRLGVR---GDIRQHPLFREINWEELERKEIDPPFRPKVKS  296 (345)
T ss_dssp             CSSGGGSBTTB---SCGGGSGGGTTCCHHHHHTTCSCC--------
T ss_pred             cCCHhHcCCCh---HHHHcCccccCCCHHHHhhCCCCCCcCCCCCC
Confidence            99999999952   38999999999999987  4567777776543

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=3.3e-54  Score=461.66  Aligned_cols=279  Identities=35%  Similarity=0.695  Sum_probs=245.0

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +.+++|++++.||+|+||+||+|+++.+++.||||++++.........+.+.+|+.+|+.++||||++++++|++...+|
T Consensus         3 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~   82 (318)
T 1fot_A            3 YSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIF   82 (318)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEE
T ss_pred             CChHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEE
Confidence            34678999999999999999999999999999999998876544455677889999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||++||+|..++...  ..+++..++.|+.||+.||+|||++||+||||||+|||++.+|++||+|||+++...   
T Consensus        83 lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~---  157 (318)
T 1fot_A           83 MIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVP---  157 (318)
T ss_dssp             EEECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECS---
T ss_pred             EEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecC---
Confidence            999999999999988765  579999999999999999999999999999999999999999999999999984310   


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                  ....
T Consensus       158 ----------------------------------------------------------------------------~~~~  161 (318)
T 1fot_A          158 ----------------------------------------------------------------------------DVTY  161 (318)
T ss_dssp             ----------------------------------------------------------------------------SCBC
T ss_pred             ----------------------------------------------------------------------------Cccc
Confidence                                                                                        0112


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +.+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+....+.+++...+.+|.  .++.++++||++||.
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~lL~  239 (318)
T 1fot_A          162 TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPP--FFNEDVKDLLSRLIT  239 (318)
T ss_dssp             CCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHTC
T ss_pred             cccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHHhc
Confidence            358999999999999999999999999999999999999999988777777777777766663  578999999999999


Q ss_pred             CCCCCcCCch-hcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCC
Q 004790          648 KEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCSTPPEVPRPM  689 (730)
Q Consensus       648 ~DP~~R~t~~-~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~  689 (730)
                      .||.+|++.. .+++++++||||++++|..+  +...||++|...
T Consensus       240 ~dp~~R~~~~~~~~~~i~~hp~f~~~~~~~~~~~~~~~p~~p~~~  284 (318)
T 1fot_A          240 RDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQ  284 (318)
T ss_dssp             SCTTTCTTSSTTTTHHHHTSGGGSSCCHHHHHTTCSCCSCCCCC-
T ss_pred             cCHHHcCCCcCCCHHHHhcCccccCCCHHHHHhCCCCCCCCCCcC
Confidence            9999999532 24899999999999999977  455677777653

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-54  Score=463.98  Aligned_cols=265  Identities=21%  Similarity=0.326  Sum_probs=215.6

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      .+++..++|++.++||+|+||+||+|++++   .||||+++.... ..+..+.+.+|+++|+.++|||||++++++.. +
T Consensus        30 ~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~---~vAvK~~~~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~  104 (307)
T 3omv_A           30 YWEIEASEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDP-TPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-D  104 (307)
T ss_dssp             CCBCCTTSCCEEEECCCCSSSEEEEEESSS---EEEEEECCCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-S
T ss_pred             CcEEcHHHeEEeeEEeeCCCcEEEEEEECC---cEEEEEEEecCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-C
Confidence            356778999999999999999999998764   489999975433 34556789999999999999999999998764 5


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|||||||+||+|.+++... ...+++.++..|+.||+.||+|||+++||||||||+||||+.++++||+|||+|+...
T Consensus       105 ~~~iVmEy~~gGsL~~~l~~~-~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~  183 (307)
T 3omv_A          105 NLAIVTQWCEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKS  183 (307)
T ss_dssp             SCEEEEECCSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC--
T ss_pred             eEEEEEEcCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecc
Confidence            689999999999999988654 3569999999999999999999999999999999999999999999999999995321


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ...                                                                          ...
T Consensus       184 ~~~--------------------------------------------------------------------------~~~  189 (307)
T 3omv_A          184 RWS--------------------------------------------------------------------------GSQ  189 (307)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCC--------------------------------------------------------------------------cce
Confidence            000                                                                          001


Q ss_pred             cccccccCcccCChhhhccC---CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC----CCCCChh
Q 004790          565 RSMSFVGTHEYLAPEIIKGE---GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD----SPATSYA  637 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~---~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~----~~~~s~~  637 (730)
                      ...+.+||+.|||||++.+.   .|+.++|||||||+||||+||+.||.+.++...+..++......|.    ...++.+
T Consensus       190 ~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  269 (307)
T 3omv_A          190 QVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKA  269 (307)
T ss_dssp             ----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCHH
T ss_pred             eecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccchHH
Confidence            12346899999999999754   4889999999999999999999999987776666655554444332    3467899


Q ss_pred             HHHHHHhhhcCCCCCcCCchhcHH--HHHcCCCC
Q 004790          638 SRDLIRGLLVKEPQHRLGVKRGAT--EIKQHPFF  669 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~~~a~--elL~HPfF  669 (730)
                      +++||.+||+.||++||++.+.++  ++|+|+|-
T Consensus       270 l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp  303 (307)
T 3omv_A          270 MKRLVADCVKKVKEERPLFPQILSSIELLQHSLP  303 (307)
T ss_dssp             HHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCC
Confidence            999999999999999999754332  35677764

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=3.2e-54  Score=459.96  Aligned_cols=259  Identities=22%  Similarity=0.335  Sum_probs=216.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEEC-----CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELS-----STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~-----~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      +..++|.+.++||+|+||+||+|++.     .++..||||+++...   ....+.+.+|+++|+.|+|||||+++++|.+
T Consensus        10 I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~---~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~   86 (299)
T 4asz_A           10 IKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS---DNARKDFHREAELLTNLQHEHIVKFYGVCVE   86 (299)
T ss_dssp             CCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCC---HHHHHHHHHHHHHHTTCCCTTBCCEEEEECS
T ss_pred             cCHHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCC---hHHHHHHHHHHHHHHhCCCCCCccEEEEEee
Confidence            55678999999999999999999975     357889999997643   3445678999999999999999999999999


Q ss_pred             cceeeEEeeecCCCCcccccccc-----------CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQ-----------PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH  471 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~-----------~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~  471 (730)
                      ++.+|||||||+||+|.+++...           ....+++.++..|+.||+.||.|||+++||||||||+||||+.+++
T Consensus        87 ~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~  166 (299)
T 4asz_A           87 GDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLL  166 (299)
T ss_dssp             SSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGC
T ss_pred             CCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCc
Confidence            99999999999999999988753           2357999999999999999999999999999999999999999999


Q ss_pred             eEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCC
Q 004790          472 IMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPS  551 (730)
Q Consensus       472 vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (730)
                      +||+|||+|+......                                                                
T Consensus       167 ~Ki~DFGla~~~~~~~----------------------------------------------------------------  182 (299)
T 4asz_A          167 VKIGDFGMSRDVYSTD----------------------------------------------------------------  182 (299)
T ss_dssp             EEECCCSCHHHHTGGG----------------------------------------------------------------
T ss_pred             EEECCcccceecCCCC----------------------------------------------------------------
Confidence            9999999996431100                                                                


Q ss_pred             CCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCC
Q 004790          552 STLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPD  630 (730)
Q Consensus       552 ~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~  630 (730)
                                ........+||+.|||||++.+..|+.++|||||||+||||+| |+.||.+.+..+.+..+..+. ..+.
T Consensus       183 ----------~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~-~~~~  251 (299)
T 4asz_A          183 ----------YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGR-VLQR  251 (299)
T ss_dssp             ----------CEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTC-CCCC
T ss_pred             ----------ceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC-CCCC
Confidence                      0011123579999999999999999999999999999999998 999999887766666655443 2344


Q ss_pred             CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       631 ~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      +..++.++.+||.+||..||++||+    +++|  |+|++
T Consensus       252 p~~~~~~~~~li~~cl~~dP~~RPs----~~~i--~~~L~  285 (299)
T 4asz_A          252 PRTCPQEVYELMLGCWQREPHMRKN----IKGI--HTLLQ  285 (299)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCC----HHHH--HHHHH
T ss_pred             CccchHHHHHHHHHHcCCChhHCcC----HHHH--HHHHH
Confidence            4578999999999999999999999    4666  34554

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=8.9e-54  Score=462.28  Aligned_cols=256  Identities=23%  Similarity=0.324  Sum_probs=211.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      +..++|.+.++||+|+||+||+|+++.     +++.||||++++..   ....+.+.+|+++|+.|+|||||+++++|.+
T Consensus        38 i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~---~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~  114 (329)
T 4aoj_A           38 IKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS---ESARQDFQREAELLTMLQHQHIVRFFGVCTE  114 (329)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCS---HHHHHHHHHHHHHHTTCCCTTBCCEEEEECS
T ss_pred             cCHHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCC---HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE
Confidence            456789999999999999999999753     68899999997643   3445678999999999999999999999999


Q ss_pred             cceeeEEeeecCCCCccccccccC-------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQP-------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD  469 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~-------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~  469 (730)
                      ++.+|||||||+||+|.++++...             ...+++.++..|+.||+.||.|||+++||||||||+||||+.+
T Consensus       115 ~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~  194 (329)
T 4aoj_A          115 GRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQG  194 (329)
T ss_dssp             SSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETT
T ss_pred             CCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCC
Confidence            999999999999999999886542             2468999999999999999999999999999999999999999


Q ss_pred             CceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCC
Q 004790          470 GHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGL  549 (730)
Q Consensus       470 g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (730)
                      +++||+|||+|+......                                                              
T Consensus       195 ~~~Ki~DFGla~~~~~~~--------------------------------------------------------------  212 (329)
T 4aoj_A          195 LVVKIGDFGMSRDIYSTD--------------------------------------------------------------  212 (329)
T ss_dssp             TEEEECCCC-----------------------------------------------------------------------
T ss_pred             CcEEEcccccceeccCCC--------------------------------------------------------------
Confidence            999999999995421000                                                              


Q ss_pred             CCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccC
Q 004790          550 PSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRF  628 (730)
Q Consensus       550 ~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~  628 (730)
                                  ........+||+.|||||++.+..|+.++|||||||+||||+| |+.||.+.+..+.+..+..+ .+.
T Consensus       213 ------------~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g-~~~  279 (329)
T 4aoj_A          213 ------------YYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQG-REL  279 (329)
T ss_dssp             -------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHT-CCC
T ss_pred             ------------cceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcC-CCC
Confidence                        0001124589999999999999999999999999999999998 99999987766666555443 334


Q ss_pred             CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       629 p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      +.+..++.++.+||.+||..||++||++    +||++
T Consensus       280 ~~p~~~~~~~~~li~~cl~~dP~~RPs~----~ei~~  312 (329)
T 4aoj_A          280 ERPRACPPEVYAIMRGCWQREPQQRHSI----KDVHA  312 (329)
T ss_dssp             CCCTTCCHHHHHHHHHHCCSSTTTSCCH----HHHHH
T ss_pred             CCcccccHHHHHHHHHHcCcChhHCcCH----HHHHH
Confidence            4456789999999999999999999995    55554

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.4e-53  Score=456.69  Aligned_cols=255  Identities=22%  Similarity=0.290  Sum_probs=213.2

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEEC-----CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELS-----STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE  401 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~-----~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~  401 (730)
                      ++..++++++++||+|+||+||+|++.     .+++.||||+++...  .....+.+.+|+.+|+.|+|||||+|++++.
T Consensus        22 ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~--~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~   99 (308)
T 4gt4_A           22 EISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA--EGPLREEFRHEAMLRARLQHPNVVCLLGVVT   99 (308)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-C--CC-CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cCCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECccc--ChHHHHHHHHHHHHHHhCCCCCCCCcceEEE
Confidence            466788999999999999999999974     357889999997543  2233456899999999999999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR  467 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~  467 (730)
                      +++.+|||||||++|+|.+++....              ...+++..+..|+.||+.||+|||+++||||||||+||||+
T Consensus       100 ~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~  179 (308)
T 4gt4_A          100 KDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVY  179 (308)
T ss_dssp             SSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC
T ss_pred             ECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEC
Confidence            9999999999999999999885431              24689999999999999999999999999999999999999


Q ss_pred             CCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccC
Q 004790          468 DDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSEL  547 (730)
Q Consensus       468 ~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (730)
                      .++++||+|||+|+......                                                            
T Consensus       180 ~~~~~Ki~DFGlar~~~~~~------------------------------------------------------------  199 (308)
T 4gt4_A          180 DKLNVKISDLGLFREVYAAD------------------------------------------------------------  199 (308)
T ss_dssp             GGGCEEECCSCCBCGGGGGG------------------------------------------------------------
T ss_pred             CCCCEEECCcccceeccCCC------------------------------------------------------------
Confidence            99999999999996431100                                                            


Q ss_pred             CCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccc
Q 004790          548 GLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQL  626 (730)
Q Consensus       548 ~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~  626 (730)
                                    ........+||+.|||||++.+..|+.++|||||||+||||+| |+.||.+.+..+.+..+..+ .
T Consensus       200 --------------~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~-~  264 (308)
T 4gt4_A          200 --------------YYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNR-Q  264 (308)
T ss_dssp             --------------CBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTT-C
T ss_pred             --------------ceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-C
Confidence                          0011224589999999999999999999999999999999998 99999998776666555443 3


Q ss_pred             cCCCCCCCChhHHHHHHhhhcCCCCCcCCchh
Q 004790          627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKR  658 (730)
Q Consensus       627 ~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~  658 (730)
                      ..|.+..++.++.+||.+||..||++||++.+
T Consensus       265 ~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~e  296 (308)
T 4gt4_A          265 VLPCPDDCPAWVYALMIECWNEFPSRRPRFKD  296 (308)
T ss_dssp             CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCcccchHHHHHHHHHHcCCChhHCcCHHH
Confidence            44555678999999999999999999999543

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.4e-52  Score=461.78  Aligned_cols=290  Identities=28%  Similarity=0.572  Sum_probs=244.0

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      .+.+.+++|++++.||+|+||.||+|+++.+++.||||++.+...........+.+|+++|+.++||||++++++|++..
T Consensus         9 ~~~v~~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~   88 (384)
T 4fr4_A            9 NEDVNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEE   88 (384)
T ss_dssp             CCCCCGGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS
T ss_pred             CCCCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC
Confidence            34567899999999999999999999999999999999998876655556678899999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|+||||+.||+|..++...  ..+++..++.|+.||+.||.|||++|||||||||+||||+.+|++||+|||++..+.
T Consensus        89 ~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~  166 (384)
T 4fr4_A           89 DMFMVVDLLLGGDLRYHLQQN--VHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLP  166 (384)
T ss_dssp             EEEEEECCCTTEEHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeecc
Confidence            999999999999999988764  579999999999999999999999999999999999999999999999999985321


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      .                                                                             ..
T Consensus       167 ~-----------------------------------------------------------------------------~~  169 (384)
T 4fr4_A          167 R-----------------------------------------------------------------------------ET  169 (384)
T ss_dssp             T-----------------------------------------------------------------------------TC
T ss_pred             C-----------------------------------------------------------------------------CC
Confidence            0                                                                             00


Q ss_pred             cccccccCcccCChhhhcc---CCCCCcceeechhHHHHHHhhCCCCCCCCCCcc---ceeeeecccccCCCCCCCChhH
Q 004790          565 RSMSFVGTHEYLAPEIIKG---EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA---TLFNVVGQQLRFPDSPATSYAS  638 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g---~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~---~l~~i~~~~~~~p~~~~~s~~~  638 (730)
                      ...+++||+.|+|||++.+   ..|+.++|||||||++|||++|+.||.+.....   .+..+......+|  ..++.++
T Consensus       170 ~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~p--~~~s~~~  247 (384)
T 4fr4_A          170 QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYP--SAWSQEM  247 (384)
T ss_dssp             CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCCCC--TTSCHHH
T ss_pred             ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccCCC--CcCCHHH
Confidence            1234689999999999974   458999999999999999999999998654322   1122223333344  4678999


Q ss_pred             HHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCcCCCCCCC
Q 004790          639 RDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEAELPGKFG  698 (730)
Q Consensus       639 ~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~~~p~~~~  698 (730)
                      ++||.+||.+||.+||+.   ++++++||||++++|..+  +...||++|..........|.
T Consensus       248 ~~li~~lL~~dP~~R~s~---~~~l~~hp~f~~~~w~~~~~~~~~p~~~p~~~~~~~~~~~~  306 (384)
T 4fr4_A          248 VSLLKKLLEPNPDQRFSQ---LSDVQNFPYMNDINWDAVFQKRLIPGFIPNKGRLNCDPTFE  306 (384)
T ss_dssp             HHHHHHHSCSSGGGSCCS---HHHHHTSGGGTTCCHHHHHTTCSCCCCCCSCCSSCCCCCCC
T ss_pred             HHHHHHHhcCCHhHhccc---HHHHHcChhhhcCCHHHHHhCCCCCCCCCCCCCCCCCCccC
Confidence            999999999999999995   789999999999999977  456788888765444333343

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=4.2e-53  Score=461.25  Aligned_cols=261  Identities=20%  Similarity=0.281  Sum_probs=219.9

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCC-----CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC-CCCcccccc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSST-----RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH-PFLPTLYTH  399 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t-----~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H-PnIV~L~~~  399 (730)
                      +++..++|++++.||+|+||+||+|++..+     ++.||||+++....  ....+.+.+|+++|..++| ||||+++++
T Consensus        59 wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~--~~~~~~~~~E~~il~~l~hhpnIV~l~g~  136 (353)
T 4ase_A           59 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT--HSEHRALMSELKILIHIGHHLNVVNLLGA  136 (353)
T ss_dssp             HBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccC--hHHHHHHHHHHHHHHHcCCCCcEEEEEEE
Confidence            456778999999999999999999998654     46899999976533  2345678999999999965 899999998


Q ss_pred             ccc-cceeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccE
Q 004790          400 FET-DRFSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENV  464 (730)
Q Consensus       400 f~~-~~~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNI  464 (730)
                      |.+ +..+|||||||++|+|.++++...              ...+++..+..|+.||+.||+|||+++||||||||+||
T Consensus       137 ~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NI  216 (353)
T 4ase_A          137 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNI  216 (353)
T ss_dssp             ECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             EEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccce
Confidence            865 567999999999999999886532              24589999999999999999999999999999999999


Q ss_pred             EecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          465 LVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       465 Ll~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                      ||+.++++||+|||+|+.+....                                                         
T Consensus       217 Ll~~~~~vKi~DFGlar~~~~~~---------------------------------------------------------  239 (353)
T 4ase_A          217 LLSEKNVVKICDFGLARDIYKDP---------------------------------------------------------  239 (353)
T ss_dssp             EECGGGCEEECCCGGGSCTTTCT---------------------------------------------------------
T ss_pred             eeCCCCCEEECcchhhhhcccCC---------------------------------------------------------
Confidence            99999999999999995431100                                                         


Q ss_pred             ccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeec
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVG  623 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~  623 (730)
                                       ......+.+||+.|||||++.+..|+.++|||||||+||||+| |+.||.+......+.+++.
T Consensus       240 -----------------~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~  302 (353)
T 4ase_A          240 -----------------DYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLK  302 (353)
T ss_dssp             -----------------TSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHH
T ss_pred             -----------------CceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence                             0112235689999999999999999999999999999999998 9999998776666666666


Q ss_pred             ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       624 ~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      ...+++.+..++.++.+||.+||..||++|||    +.+|++|
T Consensus       303 ~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt----~~eil~~  341 (353)
T 4ase_A          303 EGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPT----FSELVEH  341 (353)
T ss_dssp             HTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             cCCCCCCCccCCHHHHHHHHHHcCcChhHCcC----HHHHHHH
Confidence            55566666678999999999999999999999    5777776

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=2.3e-52  Score=465.97  Aligned_cols=286  Identities=39%  Similarity=0.698  Sum_probs=235.3

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .+.+++|++++.||+|+||.||+|+++.+++.||||++.+...........+.+|+.+|+.++||||++++++|.+.+.+
T Consensus       144 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  223 (446)
T 4ejn_A          144 RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRL  223 (446)
T ss_dssp             CCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEE
T ss_pred             CCChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEE
Confidence            35568899999999999999999999999999999999887665656667788999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccccccccC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      |||||||+||+|..++.+.  ..+++..++.|+.||+.||+|||+ +|||||||||+||||+.+|++||+|||+++....
T Consensus       224 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  301 (446)
T 4ejn_A          224 CFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK  301 (446)
T ss_dssp             EEEECCCSSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC
T ss_pred             EEEEeeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceeccC
Confidence            9999999999999888765  579999999999999999999998 9999999999999999999999999999842100


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                                                                                                  ....
T Consensus       302 ----------------------------------------------------------------------------~~~~  305 (446)
T 4ejn_A          302 ----------------------------------------------------------------------------DGAT  305 (446)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------------------------------------------------CCcc
Confidence                                                                                        0001


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ....+||+.|+|||++.+..|+.++|||||||+||||++|+.||.+.+....+..+......+|.  .++.++++||.+|
T Consensus       306 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~~  383 (446)
T 4ejn_A          306 MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPR--TLGPEAKSLLSGL  383 (446)
T ss_dssp             -CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHH
T ss_pred             cccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCc--cCCHHHHHHHHHH
Confidence            22468999999999999999999999999999999999999999987766666666666666664  5789999999999


Q ss_pred             hcCCCCCcCCc-hhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCcC
Q 004790          646 LVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEAE  692 (730)
Q Consensus       646 L~~DP~~R~t~-~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~~  692 (730)
                      |.+||.+||+. .+.++|+++||||++++|..+  +...||+.|......
T Consensus       384 L~~dP~~R~~~~~~t~~ell~hp~f~~~~~~~~~~~~~~pp~~p~~~~~~  433 (446)
T 4ejn_A          384 LKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSET  433 (446)
T ss_dssp             TCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCSCSSTT
T ss_pred             cccCHHHhCCCCCCCHHHHHhCccccCCCHHHHhhCcCCCCccCCCCCcc
Confidence            99999999921 123899999999999999976  455677777654433

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=4.7e-52  Score=476.58  Aligned_cols=286  Identities=33%  Similarity=0.591  Sum_probs=245.0

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      ..+..++|++++.||+|+||+||+|+++.+++.||||++.+...........+.+|+++|+.++||||++++++|++...
T Consensus       180 ~~~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~  259 (543)
T 3c4z_A          180 QPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTD  259 (543)
T ss_dssp             SCCCGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             ccCChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCE
Confidence            34667899999999999999999999999999999999988766555556778899999999999999999999999999


Q ss_pred             eeEEeeecCCCCccccccccC--CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQP--GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~--~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      +||||||++||+|..++....  ...+++..+++|+.||+.||+|||++||+||||||+||||+.+|++||+|||+++..
T Consensus       260 l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~  339 (543)
T 3c4z_A          260 LCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVEL  339 (543)
T ss_dssp             EEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeec
Confidence            999999999999998876543  357999999999999999999999999999999999999999999999999998542


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ...                                                                            .
T Consensus       340 ~~~----------------------------------------------------------------------------~  343 (543)
T 3c4z_A          340 KAG----------------------------------------------------------------------------Q  343 (543)
T ss_dssp             CTT----------------------------------------------------------------------------C
T ss_pred             cCC----------------------------------------------------------------------------C
Confidence            100                                                                            0


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc----cceeeeecccccCCCCCCCChhHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR----ATLFNVVGQQLRFPDSPATSYASR  639 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~----~~l~~i~~~~~~~p~~~~~s~~~~  639 (730)
                      .....++||+.|+|||++.+..|+.++|||||||+||||++|+.||.+.+..    .....+......+|  ..++.+++
T Consensus       344 ~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p--~~~s~~~~  421 (543)
T 3c4z_A          344 TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYP--DKFSPASK  421 (543)
T ss_dssp             CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCC--TTSCHHHH
T ss_pred             cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCC--cccCHHHH
Confidence            0112458999999999999999999999999999999999999999876432    22233444444454  46799999


Q ss_pred             HHHHhhhcCCCCCcCCchh-cHHHHHcCCCCCCCCcchhc--cCCCCCCCCCC
Q 004790          640 DLIRGLLVKEPQHRLGVKR-GATEIKQHPFFEGVNWALIR--CSTPPEVPRPM  689 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~~-~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p~  689 (730)
                      +||++||.+||.+||++.+ ++++|++||||++++|..+.  ...||++|.+.
T Consensus       422 ~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~i~w~~l~~~~~~pp~~P~~~  474 (543)
T 3c4z_A          422 DFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVPDSR  474 (543)
T ss_dssp             HHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTTCCHHHHHTTCSCCSCCCCSS
T ss_pred             HHHHHhccCCHhHCCCCcccCHHHHHcCccccCCCHHHHHcCCCCCCCCCCcc
Confidence            9999999999999999754 68999999999999999874  56788888764

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=1.4e-51  Score=475.02  Aligned_cols=286  Identities=34%  Similarity=0.548  Sum_probs=243.3

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      ...+..++|++++.||+|+||.||+|+++.+++.||||++.+...........+.+|+++|+.++||||++++++|+++.
T Consensus       178 ~~~~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~  257 (576)
T 2acx_A          178 RQPVTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKD  257 (576)
T ss_dssp             TSCCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hcCccccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCC
Confidence            34467789999999999999999999999999999999998876655555667889999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|||||||+||+|..++.......+++..+++|+.||+.||+|||++|||||||||+||||+.+|++||+|||+++...
T Consensus       258 ~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~  337 (576)
T 2acx_A          258 ALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVP  337 (576)
T ss_dssp             EEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceecc
Confidence            99999999999999998877655569999999999999999999999999999999999999999999999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                             .
T Consensus       338 ~~-----------------------------------------------------------------------------~  340 (576)
T 2acx_A          338 EG-----------------------------------------------------------------------------Q  340 (576)
T ss_dssp             TT-----------------------------------------------------------------------------C
T ss_pred             cC-----------------------------------------------------------------------------c
Confidence            00                                                                             0


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccc---ee-eeecccccCCCCCCCChhHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT---LF-NVVGQQLRFPDSPATSYASRD  640 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~---l~-~i~~~~~~~p~~~~~s~~~~d  640 (730)
                      ...+.+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+......   +. .+......++  ..++.++++
T Consensus       341 ~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p--~~~s~~~~d  418 (576)
T 2acx_A          341 TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYS--ERFSPQARS  418 (576)
T ss_dssp             CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCC--TTSCHHHHH
T ss_pred             cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCC--ccCCHHHHH
Confidence            11235899999999999999999999999999999999999999987654322   11 2223333343  468999999


Q ss_pred             HHHhhhcCCCCCcCCch-hcHHHHHcCCCCCCCCcchhc--cCCCCCCCCCC
Q 004790          641 LIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALIR--CSTPPEVPRPM  689 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~-~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p~  689 (730)
                      ||++||.+||.+|++.. .+++|+++||||++++|..+.  ...||++|.+.
T Consensus       419 LI~~lL~~dP~~R~g~~~~sa~eil~HpfF~~i~w~~l~~~~~~pp~~p~~~  470 (576)
T 2acx_A          419 LCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGAGMLEPPFKPDPQ  470 (576)
T ss_dssp             HHHHHTCSSGGGSTTCSSSHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC
T ss_pred             HHHHhccCCHHHcCCCCCCCHHHHHhChhhccCCHHHHhcCCCCCCCCCCcc
Confidence            99999999999999653 258999999999999999874  55688887664

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.7e-51  Score=440.59  Aligned_cols=282  Identities=38%  Similarity=0.680  Sum_probs=231.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEEC---CCCeEEEEEEeehhhhhh-HHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELS---STRCYFAMKVMDKASLAS-RKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~---~t~~~vAvKvi~k~~~~~-~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      +..++|++++.||+|+||.||+|++.   .+++.||||++++..... ......+.+|+.+|+.++||||++++++|.++
T Consensus        14 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   93 (327)
T 3a62_A           14 IRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTG   93 (327)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECS
T ss_pred             CCHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcC
Confidence            45688999999999999999999985   688999999998764322 23445678899999999999999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      +.+||||||++|++|..++...  +.+++..++.++.||+.||.|||++||+||||||+||||+.+|++||+|||+++..
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~  171 (327)
T 3a62_A           94 GKLYLILEYLSGGELFMQLERE--GIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKES  171 (327)
T ss_dssp             SCEEEEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred             CEEEEEEeCCCCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence            9999999999999999988765  57899999999999999999999999999999999999999999999999998431


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                            ..
T Consensus       172 ~~----------------------------------------------------------------------------~~  175 (327)
T 3a62_A          172 IH----------------------------------------------------------------------------DG  175 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc----------------------------------------------------------------------------CC
Confidence            00                                                                            00


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+.++......+|  ..++.++++||.
T Consensus       176 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p--~~~~~~~~~li~  253 (327)
T 3a62_A          176 TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLP--PYLTQEARDLLK  253 (327)
T ss_dssp             ---CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCC--TTSCHHHHHHHH
T ss_pred             ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCC--CCCCHHHHHHHH
Confidence            011245899999999999999999999999999999999999999998776666666666666555  457899999999


Q ss_pred             hhhcCCCCCcCCch-hcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCC
Q 004790          644 GLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCSTPPEVPRPM  689 (730)
Q Consensus       644 ~lL~~DP~~R~t~~-~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~  689 (730)
                      +||..||.+||++. ..++++++||||++++|..+  +...||+.|...
T Consensus       254 ~~L~~dp~~R~~~~~~~~~e~l~hp~f~~~~~~~~~~~~~~~p~~p~~~  302 (327)
T 3a62_A          254 KLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQ  302 (327)
T ss_dssp             HHSCSCGGGSTTSSTTTHHHHHHSGGGSSCCHHHHHTTCSCCSCCCC--
T ss_pred             HHHhcCHhhccCCCCCCHHHHHcCCcccCCCHHHHhhccCCCCCCCCcC
Confidence            99999999999753 35899999999999999876  455666666543

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1.2e-50  Score=435.81  Aligned_cols=260  Identities=29%  Similarity=0.482  Sum_probs=228.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ...++|++++.||+|+||.||+|++..+++.||||++.+.... .....++.+|+++|+.++||||+++++++.+++.+|
T Consensus        12 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~   90 (328)
T 3fe3_A           12 PHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLN-PTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLY   90 (328)
T ss_dssp             CEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             CccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEE
Confidence            3457899999999999999999999999999999999876543 345677889999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||++||+|.+++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.++++||+|||++.....  
T Consensus        91 lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~--  166 (328)
T 3fe3_A           91 LIMEYASGGEVFDYLVAH--GRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTV--  166 (328)
T ss_dssp             EEECCCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSS--
T ss_pred             EEEECCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCC--
Confidence            999999999999988765  5799999999999999999999999999999999999999999999999999843210  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       167 ---------------------------------------------------------------------------~~~~~  171 (328)
T 3fe3_A          167 ---------------------------------------------------------------------------GGKLD  171 (328)
T ss_dssp             ---------------------------------------------------------------------------SCGGG
T ss_pred             ---------------------------------------------------------------------------CCccc
Confidence                                                                                       00112


Q ss_pred             ccccCcccCChhhhccCCCC-CcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHG-SAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~-~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ..+||+.|+|||++.+..+. .++|||||||++|+|++|+.||.+.+.......+..+.+.+|.  ..+.++.+||++||
T Consensus       172 ~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~~L  249 (328)
T 3fe3_A          172 AFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPF--YMSTDCENLLKRFL  249 (328)
T ss_dssp             TTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHC
T ss_pred             cccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHHC
Confidence            45899999999999998874 7999999999999999999999988766666666666666664  57899999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      ..||.+|||    ++|+++||||+...
T Consensus       250 ~~dP~~R~t----~~eil~h~~~~~~~  272 (328)
T 3fe3_A          250 VLNPIKRGT----LEQIMKDRWINAGH  272 (328)
T ss_dssp             CSSTTTSCC----HHHHTTCTTTTTTC
T ss_pred             CCChhHCcC----HHHHhcCHhhcCCC
Confidence            999999999    79999999998654

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=6.5e-51  Score=444.20  Aligned_cols=264  Identities=30%  Similarity=0.450  Sum_probs=230.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH---HHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR---KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~---~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .++|++++.||+|+||+||+|+++.+++.||+|++++......   ...+.+.+|+.+|+.++||||++++++|++...+
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            4679999999999999999999999999999999987543221   1235678999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC----ceEEeccccccc
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG----HIMLSDFDLSLR  482 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g----~vKL~DFGlA~~  482 (730)
                      |||||||+||+|.+++...  ..+++..++.|+.||+.||.|||++||+||||||+|||++.++    ++||+|||++..
T Consensus        91 ~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~  168 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTC--SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEE
T ss_pred             EEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceE
Confidence            9999999999999988754  5799999999999999999999999999999999999998877    899999999854


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ....                                                                            
T Consensus       169 ~~~~----------------------------------------------------------------------------  172 (361)
T 2yab_A          169 IEDG----------------------------------------------------------------------------  172 (361)
T ss_dssp             CCTT----------------------------------------------------------------------------
T ss_pred             cCCC----------------------------------------------------------------------------
Confidence            2100                                                                            


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRD  640 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~d  640 (730)
                       ......+||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.+....+.++....+.++.  +..++.++++
T Consensus       173 -~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  251 (361)
T 2yab_A          173 -VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKD  251 (361)
T ss_dssp             -CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHH
T ss_pred             -CccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhccCCCHHHHH
Confidence             0112357999999999999999999999999999999999999999988777777777666665543  2567899999


Q ss_pred             HHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          641 LIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                      ||.+||.+||.+||+    +.|+++||||+.++|..
T Consensus       252 li~~~L~~dP~~R~t----~~e~l~hp~~~~~~~~~  283 (361)
T 2yab_A          252 FIRKLLVKETRKRLT----IQEALRHPWITPVDTQQ  283 (361)
T ss_dssp             HHHHHSCSSTTTSCC----HHHHHTSTTTSCSSHHH
T ss_pred             HHHHHCCCChhHCcC----HHHHhcCcCcCCCchhh
Confidence            999999999999999    79999999999999864

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=1e-49  Score=435.33  Aligned_cols=274  Identities=23%  Similarity=0.339  Sum_probs=223.5

Q ss_pred             ccCCeEEEeEEccC--CcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          329 GMSHFRLLKRLGCG--DIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       329 ~~~~y~il~~LG~G--~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      ..++|++++.||+|  +||+||+|+++.+++.||||++++... .......+++|+.+|+.++||||++++++|.+++.+
T Consensus        23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  101 (389)
T 3gni_B           23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEAC-SNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNEL  101 (389)
T ss_dssp             CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEeccccc-ChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEE
Confidence            34689999999999  999999999999999999999987643 335667889999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |||||||+||+|.+++.......+++..++.|+.||+.||.|||++|||||||||+||||+.+|++||+|||++......
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~  181 (389)
T 3gni_B          102 WVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISH  181 (389)
T ss_dssp             EEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEECEET
T ss_pred             EEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceeeccc
Confidence            99999999999999988765567999999999999999999999999999999999999999999999999998543110


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      .....                                                                     ......
T Consensus       182 ~~~~~---------------------------------------------------------------------~~~~~~  192 (389)
T 3gni_B          182 GQRQR---------------------------------------------------------------------VVHDFP  192 (389)
T ss_dssp             TEECS---------------------------------------------------------------------CBCCCC
T ss_pred             ccccc---------------------------------------------------------------------cccccc
Confidence            00000                                                                     000011


Q ss_pred             cccccCcccCChhhhcc--CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccccc-----------------
Q 004790          567 MSFVGTHEYLAPEIIKG--EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR-----------------  627 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g--~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~-----------------  627 (730)
                      ...+||+.|+|||++.+  ..|+.++|||||||++|||++|+.||.+.+....+..++.+...                 
T Consensus       193 ~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (389)
T 3gni_B          193 KYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSP  272 (389)
T ss_dssp             TTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC-----------------------
T ss_pred             ccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCccccccccccccccccc
Confidence            23479999999999998  57899999999999999999999999987666555444332211                 


Q ss_pred             ---------------------------CCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          628 ---------------------------FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       628 ---------------------------~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                                                 .+....++.++++||++||.+||.+||+    ++|+|+||||+.+.|..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt----a~ell~hp~f~~~~~~~  344 (389)
T 3gni_B          273 SRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPS----ASTLLNHSFFKQIKRRA  344 (389)
T ss_dssp             ---------------------------------CCHHHHHHHHHHTCSCTTTSCC----HHHHTTSGGGGGC---C
T ss_pred             cccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCC----HHHHhcCHHHHHHhhcc
Confidence                                       1123456889999999999999999999    79999999999988743

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.6e-49  Score=417.06  Aligned_cols=260  Identities=33%  Similarity=0.549  Sum_probs=216.8

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhh-----------------------HHHHHHHHHHHHH
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS-----------------------RKKLTRAQTEREI  384 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~-----------------------~~~~~~~~~E~~I  384 (730)
                      +..++|++++.||+|+||.||+|++..+++.||||++.+.....                       ....+.+.+|+++
T Consensus        10 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~   89 (298)
T 2zv2_A           10 VQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAI   89 (298)
T ss_dssp             CEETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHH
T ss_pred             eeecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHH
Confidence            44688999999999999999999999999999999997654322                       1224568899999


Q ss_pred             HHhcCCCCCccccccccc--cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCc
Q 004790          385 LQLLDHPFLPTLYTHFET--DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPE  462 (730)
Q Consensus       385 L~~L~HPnIV~L~~~f~~--~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPe  462 (730)
                      |+.++||||+++++++.+  +..+|+||||+++++|..++..   ..+++..++.++.||+.||.|||++||+||||||+
T Consensus        90 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~  166 (298)
T 2zv2_A           90 LKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL---KPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPS  166 (298)
T ss_dssp             HHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGG
T ss_pred             HHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHH
Confidence            999999999999999986  6789999999999999887654   47999999999999999999999999999999999


Q ss_pred             cEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCC
Q 004790          463 NVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRK  542 (730)
Q Consensus       463 NILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~  542 (730)
                      |||++.+|++||+|||++......                                                        
T Consensus       167 Nil~~~~~~~kl~Dfg~~~~~~~~--------------------------------------------------------  190 (298)
T 2zv2_A          167 NLLVGEDGHIKIADFGVSNEFKGS--------------------------------------------------------  190 (298)
T ss_dssp             GEEECTTSCEEECCCTTCEECSSS--------------------------------------------------------
T ss_pred             HEEECCCCCEEEecCCCccccccc--------------------------------------------------------
Confidence            999999999999999998542100                                                        


Q ss_pred             CCccCCCCCCCCcccccccccccccccccCcccCChhhhccCC---CCCcceeechhHHHHHHhhCCCCCCCCCCcccee
Q 004790          543 PRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEG---HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF  619 (730)
Q Consensus       543 ~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~---~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~  619 (730)
                                          .......+||+.|+|||++.+..   ++.++|||||||++|||++|+.||.+........
T Consensus       191 --------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~  250 (298)
T 2zv2_A          191 --------------------DALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHS  250 (298)
T ss_dssp             --------------------SCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH
T ss_pred             --------------------cccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHHHHHH
Confidence                                00012347999999999998776   3778999999999999999999998765544444


Q ss_pred             eeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          620 NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       620 ~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      .+......++....++.++++||.+||..||++||+    +.|+++||||+
T Consensus       251 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s----~~e~l~hp~~~  297 (298)
T 2zv2_A          251 KIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIV----VPEIKLHPWVT  297 (298)
T ss_dssp             HHHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCC----HHHHTTCHHHH
T ss_pred             HHhcccCCCCCccccCHHHHHHHHHHhhcChhhCCC----HHHHhcCcccc
Confidence            455556666766788999999999999999999999    79999999996

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=2.1e-49  Score=418.34  Aligned_cols=257  Identities=24%  Similarity=0.389  Sum_probs=221.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|++..+++.||||++.......   .+.+.+|+.+++.++||||++++++|.+++.+|+|
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   95 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK---KELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   95 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSC---HHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccH---HHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEE
Confidence            468999999999999999999999999999999997654333   34578899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||||+||+|.+++...   .+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||++......   
T Consensus        96 ~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---  169 (297)
T 3fxz_A           96 MEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE---  169 (297)
T ss_dssp             EECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCST---
T ss_pred             EECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCc---
Confidence            9999999999988764   6899999999999999999999999999999999999999999999999998542100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       170 -------------------------------------------------------------------------~~~~~~~  176 (297)
T 3fxz_A          170 -------------------------------------------------------------------------QSKRSTM  176 (297)
T ss_dssp             -------------------------------------------------------------------------TCCBCCC
T ss_pred             -------------------------------------------------------------------------ccccCCc
Confidence                                                                                     0011235


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-cccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-QLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      +||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+..+... ...+.....++..+++||.+||..
T Consensus       177 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  256 (297)
T 3fxz_A          177 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEM  256 (297)
T ss_dssp             CSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCS
T ss_pred             cCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccC
Confidence            7999999999999999999999999999999999999999887655444443322 223333456788999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ||.+||+    ++|+++||||+..
T Consensus       257 dp~~Rps----~~ell~h~~~~~~  276 (297)
T 3fxz_A          257 DVEKRGS----AKELLQHQFLKIA  276 (297)
T ss_dssp             STTTSCC----HHHHTTCGGGGGC
T ss_pred             ChhHCcC----HHHHhhChhhccc
Confidence            9999999    7999999999853

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.6e-49  Score=423.39  Aligned_cols=263  Identities=30%  Similarity=0.459  Sum_probs=225.7

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH---HHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR---KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~---~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ++|++++.||+|+||.||+|+++.+++.||+|++.+......   ...+.+.+|+.+|+.++||||++++++|.++..+|
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            579999999999999999999999999999999976543211   12456789999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC----ceEEecccccccc
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG----HIMLSDFDLSLRC  483 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g----~vKL~DFGlA~~~  483 (730)
                      +||||++|++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++    ++||+|||++...
T Consensus        91 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~  168 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI  168 (326)
T ss_dssp             EEEECCCSCBHHHHHTTS--SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEEC
T ss_pred             EEEEcCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeEC
Confidence            999999999999988654  5799999999999999999999999999999999999999887    8999999998542


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ...                                                                             
T Consensus       169 ~~~-----------------------------------------------------------------------------  171 (326)
T 2y0a_A          169 DFG-----------------------------------------------------------------------------  171 (326)
T ss_dssp             CTT-----------------------------------------------------------------------------
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRDL  641 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~dL  641 (730)
                      ......+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+......+.++......++.  ...++..+++|
T Consensus       172 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  251 (326)
T 2y0a_A          172 NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDF  251 (326)
T ss_dssp             SCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHH
T ss_pred             CccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCccccccCCHHHHHH
Confidence            0011347999999999999999999999999999999999999999987666555555444444432  24678899999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                      |++||..||.+||+    +.++++||||+..+|..
T Consensus       252 i~~~L~~dP~~Rpt----~~e~l~hp~~~~~~~~~  282 (326)
T 2y0a_A          252 IRRLLVKDPKKRMT----IQDSLQHPWIKPKDTQQ  282 (326)
T ss_dssp             HHHHSCSSGGGSCC----HHHHHHSTTTSCCSHHH
T ss_pred             HHHHccCChhhCCC----HHHHhcCCCccCCcchh
Confidence            99999999999999    79999999999988854

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1.2e-49  Score=424.69  Aligned_cols=246  Identities=21%  Similarity=0.243  Sum_probs=185.7

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc----ee
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR----FS  406 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~----~l  406 (730)
                      .+|.+.++||+|+||+||+|++  +|+.||||+++.....    .....+|+.++..++|||||++++++.+++    .+
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~~~----~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~   76 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREER----SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQL   76 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE--TTEEEEEEEECGGGHH----HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccchh----hHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEE
Confidence            4689999999999999999998  4778999999765321    112234566667889999999999997653    68


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhc--------ceeecccCCccEEecCCCceEEeccc
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML--------GVVYRDLKPENVLVRDDGHIMLSDFD  478 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~--------gIVHRDLKPeNILl~~~g~vKL~DFG  478 (730)
                      |||||||+||+|.++++..   .+++..+..++.|++.||+|||++        +||||||||+||||+.+|++||+|||
T Consensus        77 ~lV~Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFG  153 (303)
T 3hmm_A           77 WLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG  153 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCT
T ss_pred             EEEecCCCCCcHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCC
Confidence            9999999999999998764   689999999999999999999987        99999999999999999999999999


Q ss_pred             ccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccc
Q 004790          479 LSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELV  558 (730)
Q Consensus       479 lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (730)
                      +|+........                                                                     
T Consensus       154 la~~~~~~~~~---------------------------------------------------------------------  164 (303)
T 3hmm_A          154 LAVRHDSATDT---------------------------------------------------------------------  164 (303)
T ss_dssp             TCEEEETTTTE---------------------------------------------------------------------
T ss_pred             CCccccCCCCc---------------------------------------------------------------------
Confidence            99653211000                                                                     


Q ss_pred             cccccccccccccCcccCChhhhccC------CCCCcceeechhHHHHHHhhCCCCCCCCCCccc--------------e
Q 004790          559 AEPTAARSMSFVGTHEYLAPEIIKGE------GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT--------------L  618 (730)
Q Consensus       559 ~e~~~~~~~s~vGT~~Y~APEvl~g~------~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~--------------l  618 (730)
                         ......+.+||+.|||||++.+.      .|+.++|||||||+||||++|.+||........              +
T Consensus       165 ---~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~  241 (303)
T 3hmm_A          165 ---IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEM  241 (303)
T ss_dssp             ---ESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHH
T ss_pred             ---eeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHH
Confidence               00112346899999999999875      356799999999999999999887754332111              1


Q ss_pred             ee-eeccccc--CCCC---CCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          619 FN-VVGQQLR--FPDS---PATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       619 ~~-i~~~~~~--~p~~---~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      .+ +..+.++  +|..   ...+..+.+||.+||..||++|||+.
T Consensus       242 ~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~  286 (303)
T 3hmm_A          242 RKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTAL  286 (303)
T ss_dssp             HHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHH
T ss_pred             HHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHH
Confidence            11 1112221  1211   11224678999999999999999953

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-49  Score=429.41  Aligned_cols=257  Identities=30%  Similarity=0.480  Sum_probs=223.3

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ..++|++++.||+|+||+||+|++..+++.||||++.+...........+.+|+.+|+.++||||++++++|.+...+|+
T Consensus         7 ~i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l   86 (336)
T 3h4j_B            7 HIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVM   86 (336)
T ss_dssp             EETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence            35789999999999999999999999999999999987655443444578899999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||+ +|+|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....   
T Consensus        87 v~E~~-~g~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~---  160 (336)
T 3h4j_B           87 VIEYA-GGELFDYIVEK--KRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTD---  160 (336)
T ss_dssp             EECCC-CEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTT---
T ss_pred             EEECC-CCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccC---
Confidence            99999 78888877654  5799999999999999999999999999999999999999999999999999843210   


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                .....+
T Consensus       161 --------------------------------------------------------------------------~~~~~~  166 (336)
T 3h4j_B          161 --------------------------------------------------------------------------GNFLKT  166 (336)
T ss_dssp             --------------------------------------------------------------------------SBTTCC
T ss_pred             --------------------------------------------------------------------------Cccccc
Confidence                                                                                      001123


Q ss_pred             cccCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          569 FVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      .+||+.|+|||++.+..+ +.++|||||||++|+|++|+.||.+......+..+......+|  ..++.++++||++||.
T Consensus       167 ~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~li~~~L~  244 (336)
T 3h4j_B          167 SCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMP--DFLSPGAQSLIRRMIV  244 (336)
T ss_dssp             CTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBCCCCSSCCCCC--TTSCHHHHHHHHTTSC
T ss_pred             ccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCc--ccCCHHHHHHHHHHcC
Confidence            579999999999998886 7899999999999999999999998766666666655555554  3578999999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      .||.+|||    ++|+++||||+.
T Consensus       245 ~dP~~Rpt----~~eil~hp~~~~  264 (336)
T 3h4j_B          245 ADPMQRIT----IQEIRRDPWFNV  264 (336)
T ss_dssp             SSGGGSCC----HHHHTTCHHHHT
T ss_pred             CChhHCcC----HHHHHhChhhcc
Confidence            99999999    799999999985

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=6.8e-49  Score=417.05  Aligned_cols=264  Identities=25%  Similarity=0.409  Sum_probs=214.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ...++|++++.||+|+||+||+|++. +++.||+|++..... .......+.+|+++|+.++||||++++++|.++..+|
T Consensus        18 ~l~~~y~~~~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   95 (311)
T 3niz_A           18 GLMEKYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAE-DEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLT   95 (311)
T ss_dssp             CSSCEEEEEEEEEECSSCEEEEEEET-TSCEEEEEEEC-------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEE
T ss_pred             chHhhhHhhhhccCCCCeEEEEEEEC-CCCEEEEEEEecccc-cchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEE
Confidence            34689999999999999999999996 488999999976532 2234466889999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||++ ++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..... 
T Consensus        96 lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~-  172 (311)
T 3niz_A           96 LVFEFME-KDLKKVLDEN-KTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIP-  172 (311)
T ss_dssp             EEEECCS-EEHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSC-
T ss_pred             EEEcCCC-CCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCCC-
Confidence            9999996 5777766543 356999999999999999999999999999999999999999999999999998542100 


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       173 ---------------------------------------------------------------------------~~~~~  177 (311)
T 3niz_A          173 ---------------------------------------------------------------------------VRSYT  177 (311)
T ss_dssp             ---------------------------------------------------------------------------CC---
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00011


Q ss_pred             ccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccccc-------------------
Q 004790          568 SFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR-------------------  627 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~-------------------  627 (730)
                      ..+||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+....+.+..+......                   
T Consensus       178 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
T 3niz_A          178 HEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRT  257 (311)
T ss_dssp             CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCC
T ss_pred             CCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcc
Confidence            2478999999999987 45899999999999999999999999987766555443220000                   


Q ss_pred             CC---------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          628 FP---------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       628 ~p---------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      +.         ..+.++.++++||.+||.+||.+|||    ++|+++||||+++++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~f~~~~~~  310 (311)
T 3niz_A          258 FQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRIS----ARDAMNHPYFKDLDPQ  310 (311)
T ss_dssp             CCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCC----HHHHHTSGGGTTSCTT
T ss_pred             cccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCC----HHHHhcCcccccCCcc
Confidence            00         01346788999999999999999999    7999999999998864

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=7.5e-49  Score=438.39  Aligned_cols=292  Identities=26%  Similarity=0.374  Sum_probs=203.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc-----ccc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE-----TDR  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~-----~~~  404 (730)
                      .++|++++.||+|+||+||+|+++.+++.||||++.+.. .......++.+|+++|+.++||||++++++|.     ...
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~  130 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF-EDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD  130 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhh-cCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence            478999999999999999999999999999999996643 34455677899999999999999999999984     446


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+||||||+ +++|..++...  ..+++..++.|++||+.||+|||++|||||||||+||||+.++++||+|||+|+...
T Consensus       131 ~~~lv~e~~-~~~L~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  207 (458)
T 3rp9_A          131 ELYVVLEIA-DSDFKKLFRTP--VYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVD  207 (458)
T ss_dssp             CEEEEECCC-SEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTT
T ss_pred             eEEEEEecc-ccchhhhcccC--CCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhcc
Confidence            799999998 68898887654  579999999999999999999999999999999999999999999999999996542


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      .........                  +  ..            ++.             .+...  ....  .......
T Consensus       208 ~~~~~~~~~------------------~--~~------------~~~-------------~~~~~--~~~~--~~~~~~~  238 (458)
T 3rp9_A          208 YPENGNSQL------------------P--IS------------PRE-------------DDMNL--VTFP--HTKNLKR  238 (458)
T ss_dssp             SCTTCCCCC------------------C----------------------------------------------------
T ss_pred             Ccccccccc------------------c--cC------------ccc-------------ccccc--cccc--ccccccc
Confidence            111000000                  0  00            000             00000  0000  0000111


Q ss_pred             cccccccCcccCChhhhc-cCCCCCcceeechhHHHHHHhh-----------CCCCCCCCCCc-----------------
Q 004790          565 RSMSFVGTHEYLAPEIIK-GEGHGSAVDWWTFGIFLHELLY-----------GKTPFKGSGNR-----------------  615 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~-g~~~~~~sDIWSLG~iLyELlt-----------G~~PF~g~~~~-----------------  615 (730)
                      ....++||++|+|||++. +..|+.++|||||||+||||++           |+++|.+....                 
T Consensus       239 ~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~  318 (458)
T 3rp9_A          239 QLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTR  318 (458)
T ss_dssp             ------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC--------------------CH
T ss_pred             cccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccccccccccccccCCCCcccccccccccccccccccc
Confidence            234579999999999874 5669999999999999999999           78888775421                 


Q ss_pred             ---cceeee---eccc-----------------ccCC---------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHH
Q 004790          616 ---ATLFNV---VGQQ-----------------LRFP---------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEI  663 (730)
Q Consensus       616 ---~~l~~i---~~~~-----------------~~~p---------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~el  663 (730)
                         +.+..+   ++..                 ..++         ..+..+.++.+||++||.+||.+|||    ++|+
T Consensus       319 ~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t----~~e~  394 (458)
T 3rp9_A          319 GNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNKRIT----INEC  394 (458)
T ss_dssp             HHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTTSCC----HHHH
T ss_pred             CCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCccccCC----HHHH
Confidence               000000   0000                 0000         12356889999999999999999999    7999


Q ss_pred             HcCCCCCCCCcchhc
Q 004790          664 KQHPFFEGVNWALIR  678 (730)
Q Consensus       664 L~HPfF~~v~w~~~r  678 (730)
                      |+||||++++|....
T Consensus       395 L~Hp~f~~~~~~~~e  409 (458)
T 3rp9_A          395 LAHPFFKEVRIAEVE  409 (458)
T ss_dssp             HHSGGGTTTCCGGGC
T ss_pred             hcCHhhhhcCCCccC
Confidence            999999999998664

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=5.2e-49  Score=411.98  Aligned_cols=260  Identities=25%  Similarity=0.387  Sum_probs=209.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +++|++++.||+|+||+||+|+++.+++.||||++..... .......+.+|+.+|+.++||||++++++|.+++.+|||
T Consensus         1 l~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   79 (292)
T 3o0g_A            1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCS-STTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCC-cCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEE
Confidence            3689999999999999999999999999999999976543 223446678999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+.+ +|..++... .+.+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||++......   
T Consensus        80 ~e~~~~-~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~---  154 (292)
T 3o0g_A           80 FEFCDQ-DLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIP---  154 (292)
T ss_dssp             EECCSE-EHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSC---
T ss_pred             EecCCC-CHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCCc---
Confidence            999965 554444432 257999999999999999999999999999999999999999999999999998542100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       155 -------------------------------------------------------------------------~~~~~~~  161 (292)
T 3o0g_A          155 -------------------------------------------------------------------------VRCYSAE  161 (292)
T ss_dssp             -------------------------------------------------------------------------CSCCCSC
T ss_pred             -------------------------------------------------------------------------cccccCC
Confidence                                                                                     0011234


Q ss_pred             ccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCC-CCCCccceeeeeccc-----------------cc---
Q 004790          570 VGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFK-GSGNRATLFNVVGQQ-----------------LR---  627 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~-g~~~~~~l~~i~~~~-----------------~~---  627 (730)
                      +||+.|+|||++.+.. ++.++|||||||++|||++|..||. +.+....+..+....                 ..   
T Consensus       162 ~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (292)
T 3o0g_A          162 VVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPM  241 (292)
T ss_dssp             CSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCC
T ss_pred             ccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhccccccccccc
Confidence            7899999999998876 7999999999999999998888854 333222222221100                 00   


Q ss_pred             -------CCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          628 -------FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       628 -------~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                             ....+..+.++++||++||..||++|||    ++|+++||||+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~hp~f~~~  289 (292)
T 3o0g_A          242 YPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRIS----AEEALQHPYFSDF  289 (292)
T ss_dssp             CCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGTTC
T ss_pred             ccCCcchhhcccccChHHHHHHHHHhccChhhCCC----HHHHhcCcccccC
Confidence                   0111346889999999999999999999    7999999999964

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.8e-49  Score=423.00  Aligned_cols=257  Identities=23%  Similarity=0.369  Sum_probs=224.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|++..+++.||+|++....    .....+.+|+.+|+.++||||++++++|++...+|+|
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv   79 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG----TDQVLVKKEISILNIARHRNILHLHESFESMEELVMI   79 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc----ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEE
Confidence            478999999999999999999999999999999997543    2335578999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC--CCceEEecccccccccCCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD--DGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~--~g~vKL~DFGlA~~~~~~~  487 (730)
                      ||||+||+|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.  ++.+||+|||++...... 
T Consensus        80 ~e~~~g~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~-  157 (321)
T 1tki_A           80 FEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG-  157 (321)
T ss_dssp             ECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT-
T ss_pred             EEeCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC-
Confidence            9999999999987654 346999999999999999999999999999999999999987  789999999998542100 


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                  ....
T Consensus       158 ----------------------------------------------------------------------------~~~~  161 (321)
T 1tki_A          158 ----------------------------------------------------------------------------DNFR  161 (321)
T ss_dssp             ----------------------------------------------------------------------------CEEE
T ss_pred             ----------------------------------------------------------------------------Cccc
Confidence                                                                                        0112


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHHHHHhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRDLIRGL  645 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~dLI~~l  645 (730)
                      ..+||+.|+|||++.+..++.++|||||||++|+|++|..||.+......+.++....+.++.  ...++.++++||++|
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  241 (321)
T 1tki_A          162 LLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRL  241 (321)
T ss_dssp             EEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTT
T ss_pred             cccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHHH
Confidence            357999999999999998999999999999999999999999988776666666666655543  246799999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      |..||.+||+    +.|+++||||+..
T Consensus       242 L~~dp~~Rpt----~~e~l~hp~~~~~  264 (321)
T 1tki_A          242 LVKERKSRMT----ASEALQHPWLKQK  264 (321)
T ss_dssp             SCSSGGGSCC----HHHHHHSHHHHSC
T ss_pred             cCCChhHCcC----HHHHhcChhhccC
Confidence            9999999999    7999999999864

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.4e-49  Score=429.99  Aligned_cols=280  Identities=28%  Similarity=0.427  Sum_probs=209.6

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCcccccccccc--ce
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETD--RF  405 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~--~~  405 (730)
                      ..++|++++.||+|+||.||+|.++.+++.||||++.+.. .......++.+|+.+|+.+. ||||++++++|..+  ..
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~-~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~   85 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAF-QNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD   85 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC---CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccc-cChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence            3578999999999999999999999999999999996543 33455667889999999996 99999999999754  47


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|||||||. ++|..++..   ..+++..++.++.||+.||+|||++||+||||||+||||+.++++||+|||+|+.+..
T Consensus        86 ~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  161 (388)
T 3oz6_A           86 VYLVFDYME-TDLHAVIRA---NILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVN  161 (388)
T ss_dssp             EEEEEECCS-EEHHHHHHH---TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEESSS
T ss_pred             EEEEecccC-cCHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcccccccc
Confidence            899999996 689888765   3699999999999999999999999999999999999999999999999999975422


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ..........                  +                 ...    .+                .........
T Consensus       162 ~~~~~~~~~~------------------~-----------------~~~----~~----------------~~~~~~~~~  186 (388)
T 3oz6_A          162 IRRVTNNIPL------------------S-----------------INE----NT----------------ENFDDDQPI  186 (388)
T ss_dssp             CCCCCCCGGG------------------C-----------------CC--------------------------------
T ss_pred             cccccccccc------------------c-----------------ccc----cc----------------ccccccccc
Confidence            1110000000                  0                 000    00                000001112


Q ss_pred             ccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC---------------
Q 004790          566 SMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP---------------  629 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p---------------  629 (730)
                      ...++||++|+|||++.+ ..|+.++|||||||++|||++|++||.+.+....+..++. .+.+|               
T Consensus       187 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~-~~~~p~~~~~~~~~~~~~~~  265 (388)
T 3oz6_A          187 LTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIG-VIDFPSNEDVESIQSPFAKT  265 (388)
T ss_dssp             ---CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH-HHCCCCHHHHHTSCCSSHHH
T ss_pred             ccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH-hcCCCCHHHHHhccCHHHHH
Confidence            345799999999999987 5689999999999999999999999998776655544431 11111               


Q ss_pred             -------------------------------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          630 -------------------------------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       630 -------------------------------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                                                     .....+.++.+||.+||..||.+|||    ++|+|+||||+.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t----~~e~l~Hp~~~~~~  336 (388)
T 3oz6_A          266 MIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRIS----ANDALKHPFVSIFH  336 (388)
T ss_dssp             HHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCC----HHHHTTSTTTTTTC
T ss_pred             HHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCC----HHHHhCCHHHHHhc
Confidence                                           12256889999999999999999999    79999999998754

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=4e-49  Score=429.24  Aligned_cols=258  Identities=26%  Similarity=0.458  Sum_probs=224.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||.||+|.++.+++.||+|++.+.... ....+.+.+|+.+|+.++||||++++++|.+++.+|+|
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  106 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV  106 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            46799999999999999999999999999999999876543 34556789999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC---CceEEecccccccccCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD---GHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~---g~vKL~DFGlA~~~~~~  486 (730)
                      ||||.||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+   +.+||+|||++......
T Consensus       107 ~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~  184 (362)
T 2bdw_A          107 FDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS  184 (362)
T ss_dssp             ECCCCSCBHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTC
T ss_pred             EecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCC
Confidence            9999999998877654  579999999999999999999999999999999999999865   45999999998432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       185 -----------------------------------------------------------------------------~~~  187 (362)
T 2bdw_A          185 -----------------------------------------------------------------------------EAW  187 (362)
T ss_dssp             -----------------------------------------------------------------------------CSC
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         001


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHHHHHh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRDLIRG  644 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~dLI~~  644 (730)
                      ...+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.+....+..+..+.+.++.  +..++.++++||.+
T Consensus       188 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~  267 (362)
T 2bdw_A          188 HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDS  267 (362)
T ss_dssp             CCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHH
T ss_pred             ccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHH
Confidence            2357999999999999999999999999999999999999999987766666666666655553  24678999999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||..||.+||+    +.++++||||..
T Consensus       268 ~L~~dP~~R~t----~~e~l~hp~~~~  290 (362)
T 2bdw_A          268 MLTVNPKKRIT----ADQALKVPWICN  290 (362)
T ss_dssp             HSCSSGGGSCC----HHHHTTSHHHHT
T ss_pred             HcCCChhhCcC----HHHHhcCcccCC
Confidence            99999999999    799999999975

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=1.6e-48  Score=417.05  Aligned_cols=261  Identities=25%  Similarity=0.432  Sum_probs=217.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|++..+++.||||++......  ...+.+.+|+.+++.++||||+++++++.+++..|||
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv   83 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV--DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   83 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEccccc--chHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            47899999999999999999999999999999999754322  2335678999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||||+||+|.+++...  ..+++..++.++.||+.||+|||++||+||||||+||||+.++.+||+|||++..+....  
T Consensus        84 ~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~--  159 (323)
T 3tki_A           84 LEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNN--  159 (323)
T ss_dssp             EECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETT--
T ss_pred             EEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccCC--
Confidence            9999999999988754  569999999999999999999999999999999999999999999999999985421000  


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              ........
T Consensus       160 ------------------------------------------------------------------------~~~~~~~~  167 (323)
T 3tki_A          160 ------------------------------------------------------------------------RERLLNKM  167 (323)
T ss_dssp             ------------------------------------------------------------------------EECCBCSC
T ss_pred             ------------------------------------------------------------------------cccccCCC
Confidence                                                                                    00011245


Q ss_pred             ccCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCccceee-eecccccCCCCCCCChhHHHHHHhhhc
Q 004790          570 VGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-VVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~-i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +||+.|+|||++.+..+ +.++|||||||++|+|++|+.||.+......... ........+....++.++.+||.+||.
T Consensus       168 ~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  247 (323)
T 3tki_A          168 CGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILV  247 (323)
T ss_dssp             CSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSC
T ss_pred             ccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCccccCCHHHHHHHHHHcc
Confidence            89999999999998876 7789999999999999999999987655433322 222333334445678999999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      .||.+||+    ++|+++||||+..
T Consensus       248 ~dP~~R~t----~~eil~h~~~~~~  268 (323)
T 3tki_A          248 ENPSARIT----IPDIKKDRWYNKP  268 (323)
T ss_dssp             SSTTTSCC----HHHHTTCTTTTCC
T ss_pred             CChhhCcC----HHHHhhChhhccc
Confidence            99999999    7999999999864

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=9.7e-49  Score=438.74  Aligned_cols=259  Identities=26%  Similarity=0.458  Sum_probs=224.5

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|.++.+++.||+|++.+..... .....+.+|+++|+.++||||++++++|.+++.+|+|
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~-~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv   88 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSA-RDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI   88 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHH-HHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCH-HHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence            467999999999999999999999999999999998765433 4456789999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec---CCCceEEecccccccccCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR---DDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~---~~g~vKL~DFGlA~~~~~~  486 (730)
                      ||||.||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++   .++.+||+|||++......
T Consensus        89 ~E~~~gg~L~~~i~~~--~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~  166 (444)
T 3soa_A           89 FDLVTGGELFEDIVAR--EYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGE  166 (444)
T ss_dssp             ECCCBCCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTT
T ss_pred             EEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCC
Confidence            9999999998887765  5799999999999999999999999999999999999998   4688999999998432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                  ....
T Consensus       167 ----------------------------------------------------------------------------~~~~  170 (444)
T 3soa_A          167 ----------------------------------------------------------------------------QQAW  170 (444)
T ss_dssp             ----------------------------------------------------------------------------CCBC
T ss_pred             ----------------------------------------------------------------------------Ccee
Confidence                                                                                        0011


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHHHHHh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRDLIRG  644 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~dLI~~  644 (730)
                      ...+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.+....+..+..+.+.++.  +..++.++++||.+
T Consensus       171 ~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  250 (444)
T 3soa_A          171 FGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINK  250 (444)
T ss_dssp             CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHH
T ss_pred             ecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccccCCHHHHHHHHH
Confidence            2358999999999999999999999999999999999999999987776666666666655543  35789999999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||..||.+||+    +.|+|+||||+.
T Consensus       251 ~L~~dP~~Rpt----a~e~L~hp~~~~  273 (444)
T 3soa_A          251 MLTINPSKRIT----AAEALKHPWISH  273 (444)
T ss_dssp             HSCSSTTTSCC----HHHHHHSCTTHH
T ss_pred             HcCCChhHCCC----HHHHhcCccccC
Confidence            99999999999    799999999975

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=6.3e-49  Score=408.21  Aligned_cols=260  Identities=32%  Similarity=0.540  Sum_probs=225.2

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .+.+++|++++.||+|+||.||+|++..++..||+|++.+...........+.+|+.+++.++||||++++++|.+....
T Consensus         5 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   84 (279)
T 3fdn_A            5 QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRV   84 (279)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             eeecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEE
Confidence            35678999999999999999999999999999999999876655544556788999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+++++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||++..... 
T Consensus        85 ~lv~e~~~~~~l~~~l~~~--~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~-  161 (279)
T 3fdn_A           85 YLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS-  161 (279)
T ss_dssp             EEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC---
T ss_pred             EEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCCc-
Confidence            9999999999999888765  5699999999999999999999999999999999999999999999999998732100 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       162 -----------------------------------------------------------------------------~~~  164 (279)
T 3fdn_A          162 -----------------------------------------------------------------------------SRR  164 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         011


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+......+..+......+|  ..++.++++||.+||
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l  242 (279)
T 3fdn_A          165 TDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFP--DFVTEGARDLISRLL  242 (279)
T ss_dssp             ---CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCC--TTSCHHHHHHHHHHC
T ss_pred             cccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCCCCCC--CcCCHHHHHHHHHHh
Confidence            234789999999999999999999999999999999999999998765555555544444444  457899999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ..||.+||+    +.|+++||||+..
T Consensus       243 ~~~p~~Rps----~~e~l~h~~~~~~  264 (279)
T 3fdn_A          243 KHNPSQRPM----LREVLEHPWITAN  264 (279)
T ss_dssp             CSSGGGSCC----HHHHHHCHHHHHH
T ss_pred             ccChhhCCC----HHHHhhCccccCC
Confidence            999999999    7999999999863

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=5e-49  Score=425.74  Aligned_cols=264  Identities=27%  Similarity=0.446  Sum_probs=219.7

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH--HHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR--KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~--~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      .++|++++.||+|+||+||+|+++.+++.||||++++......  ...+.+.+|+.+|+.++||||++++++|.+++.+|
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY  102 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            4679999999999999999999999999999999976543221  12456889999999999999999999999999999


Q ss_pred             EEeeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc---eEEeccccccc
Q 004790          408 LVMEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH---IMLSDFDLSLR  482 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~---vKL~DFGlA~~  482 (730)
                      ||||||+|++|..++...  .+..+++..++.++.||+.||.|||++||+||||||+|||++.++.   +||+|||++..
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~  182 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQ  182 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEE
T ss_pred             EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeE
Confidence            999999999998766543  2345899999999999999999999999999999999999987654   99999999854


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ....                                                                            
T Consensus       183 ~~~~----------------------------------------------------------------------------  186 (351)
T 3c0i_A          183 LGES----------------------------------------------------------------------------  186 (351)
T ss_dssp             CCTT----------------------------------------------------------------------------
T ss_pred             ecCC----------------------------------------------------------------------------
Confidence            2100                                                                            


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRD  640 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~d  640 (730)
                      .......+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.. ...+..+....+.++.  +..++.++++
T Consensus       187 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~-~~~~~~i~~~~~~~~~~~~~~~s~~~~~  265 (351)
T 3c0i_A          187 GLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK-ERLFEGIIKGKYKMNPRQWSHISESAKD  265 (351)
T ss_dssp             SCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH-HHHHHHHHHTCCCCCHHHHTTSCHHHHH
T ss_pred             CeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH-HHHHHHHHcCCCCCCccccccCCHHHHH
Confidence            000123479999999999999999999999999999999999999998743 2333344444433332  2467899999


Q ss_pred             HHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          641 LIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      ||++||..||++||+    +.++++||||+..++
T Consensus       266 li~~~L~~dP~~R~s----~~e~l~hp~~~~~~~  295 (351)
T 3c0i_A          266 LVRRMLMLDPAERIT----VYEALNHPWLKERDR  295 (351)
T ss_dssp             HHHHHTCSSTTTSCC----HHHHHTSHHHHTHHH
T ss_pred             HHHHHCCCChhHCcC----HHHHhcChhhcCCcc
Confidence            999999999999999    799999999998654

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.2e-48  Score=421.27  Aligned_cols=265  Identities=28%  Similarity=0.430  Sum_probs=220.0

Q ss_pred             HhhhhhcCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-----CCC
Q 004790          318 ILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-----HPF  392 (730)
Q Consensus       318 ~~~~~~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-----HPn  392 (730)
                      ...+..+.+.+..++|+++++||+|+||+||+|++..+++.||||++.+..    .....+.+|+++|+.+.     |||
T Consensus        22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~h~~   97 (360)
T 3llt_A           22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK----KYTRSAKIEADILKKIQNDDINNNN   97 (360)
T ss_dssp             GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH----HHHHHHHHHHHHHHHTCCCSTTGGG
T ss_pred             ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch----hhhhhhHHHHHHHHHhcccCCCCCC
Confidence            344556677788899999999999999999999999999999999997532    33455678999999986     999


Q ss_pred             CccccccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC----
Q 004790          393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD----  468 (730)
Q Consensus       393 IV~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~----  468 (730)
                      |++++++|...+.+||||||+ |++|.+++.......+++..++.++.||+.||.|||++|||||||||+||||+.    
T Consensus        98 iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~  176 (360)
T 3llt_A           98 IVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFE  176 (360)
T ss_dssp             BCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCC
T ss_pred             eecccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEcccccc
Confidence            999999999999999999999 999999988776567999999999999999999999999999999999999975    


Q ss_pred             ---------------------CCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCc
Q 004790          469 ---------------------DGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACF  527 (730)
Q Consensus       469 ---------------------~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~  527 (730)
                                           ++.+||+|||++.....                                          
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~------------------------------------------  214 (360)
T 3llt_A          177 KSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSD------------------------------------------  214 (360)
T ss_dssp             EEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTS------------------------------------------
T ss_pred             ccccchhcccccccccccccCCCCEEEEeccCceecCC------------------------------------------
Confidence                                 78999999999843100                                          


Q ss_pred             cCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCC
Q 004790          528 IPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKT  607 (730)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~  607 (730)
                                                           .....+||+.|+|||++.+..++.++|||||||++|||++|+.
T Consensus       215 -------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~  257 (360)
T 3llt_A          215 -------------------------------------YHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSL  257 (360)
T ss_dssp             -------------------------------------CCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred             -------------------------------------CCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCC
Confidence                                                 0113479999999999999999999999999999999999999


Q ss_pred             CCCCCCCccceeeeeccc--------------------------ccCCCCC------------------CCChhHHHHHH
Q 004790          608 PFKGSGNRATLFNVVGQQ--------------------------LRFPDSP------------------ATSYASRDLIR  643 (730)
Q Consensus       608 PF~g~~~~~~l~~i~~~~--------------------------~~~p~~~------------------~~s~~~~dLI~  643 (730)
                      ||.+.+..+.+..+....                          ..+|...                  ..+..+.+||.
T Consensus       258 pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  337 (360)
T 3llt_A          258 LFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLY  337 (360)
T ss_dssp             SCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHH
Confidence            998765443332221110                          0111110                  12367789999


Q ss_pred             hhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          644 GLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       644 ~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      +||++||.+||+    ++|+|+||||+
T Consensus       338 ~~L~~dP~~Rpt----a~elL~hp~f~  360 (360)
T 3llt_A          338 SILQIDPTLRPS----PAELLKHKFLE  360 (360)
T ss_dssp             HHCCSSGGGSCC----HHHHTTSGGGC
T ss_pred             HHhcCChhhCCC----HHHHhcCcccC
Confidence            999999999999    79999999996

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.9e-49  Score=424.09  Aligned_cols=275  Identities=40%  Similarity=0.743  Sum_probs=223.2

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEEC---CCCeEEEEEEeehhhhh-hHHHHHHHHHHHHHHHhc-CCCCCcccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELS---STRCYFAMKVMDKASLA-SRKKLTRAQTEREILQLL-DHPFLPTLYTHFE  401 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~---~t~~~vAvKvi~k~~~~-~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~  401 (730)
                      .+..++|++++.||+|+||+||+|++.   .+++.||||++++.... .......+.+|+++|+.+ +||||++++++|.
T Consensus        50 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~  129 (355)
T 1vzo_A           50 KVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQ  129 (355)
T ss_dssp             CCCGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEE
T ss_pred             cccccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEe
Confidence            356689999999999999999999984   58899999999754321 112233466799999999 7999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      ++..+||||||++||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+||||+.++++||+|||+++
T Consensus       130 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~  207 (355)
T 1vzo_A          130 TETKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSK  207 (355)
T ss_dssp             ETTEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEE
T ss_pred             eCceEEEEeecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCCe
Confidence            999999999999999999988765  479999999999999999999999999999999999999999999999999985


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      .+...                                                                           
T Consensus       208 ~~~~~---------------------------------------------------------------------------  212 (355)
T 1vzo_A          208 EFVAD---------------------------------------------------------------------------  212 (355)
T ss_dssp             ECCGG---------------------------------------------------------------------------
T ss_pred             ecccC---------------------------------------------------------------------------
Confidence            42100                                                                           


Q ss_pred             ccccccccccCcccCChhhhccC--CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeee----cccccCCCCCCCC
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGE--GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV----GQQLRFPDSPATS  635 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~--~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~----~~~~~~p~~~~~s  635 (730)
                      .......++||+.|+|||++.+.  .++.++|||||||+||||++|+.||...........+.    ....  +....++
T Consensus       213 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  290 (355)
T 1vzo_A          213 ETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEP--PYPQEMS  290 (355)
T ss_dssp             GGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCC--CCCTTSC
T ss_pred             CCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCC--CCCcccC
Confidence            00112346899999999999863  47899999999999999999999998755433332222    2222  2334678


Q ss_pred             hhHHHHHHhhhcCCCCCcCCch-hcHHHHHcCCCCCCCCcchhccC
Q 004790          636 YASRDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALIRCS  680 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~-~~a~elL~HPfF~~v~w~~~r~~  680 (730)
                      ..+++||++||..||.+||++. ..++++++||||+.++|..+...
T Consensus       291 ~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~~~~~l~~~  336 (355)
T 1vzo_A          291 ALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAK  336 (355)
T ss_dssp             HHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHHHTT
T ss_pred             HHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcCChhHhhhc
Confidence            9999999999999999999431 23899999999999999977543

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=6.6e-49  Score=419.95  Aligned_cols=264  Identities=22%  Similarity=0.355  Sum_probs=211.4

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ...++|++++.||+|+||+||+|++..+++.||||+++.... .......+.+|+++|+.++||||+++++++.++..+|
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHE-EEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH  109 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC---------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEccccc-ccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence            345789999999999999999999999999999999976542 2334456789999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec-----CCCceEEeccccccc
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR-----DDGHIMLSDFDLSLR  482 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~-----~~g~vKL~DFGlA~~  482 (730)
                      |||||+. |+|..++...  ..+++..++.++.||+.||.|||++||+||||||+||||+     .++.+||+|||++..
T Consensus       110 lv~e~~~-~~L~~~~~~~--~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~  186 (329)
T 3gbz_A          110 LIFEYAE-NDLKKYMDKN--PDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARA  186 (329)
T ss_dssp             EEEECCS-EEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHH
T ss_pred             EEEecCC-CCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccc
Confidence            9999996 5998888765  4699999999999999999999999999999999999994     455699999999854


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      +...                                                                            
T Consensus       187 ~~~~----------------------------------------------------------------------------  190 (329)
T 3gbz_A          187 FGIP----------------------------------------------------------------------------  190 (329)
T ss_dssp             HC------------------------------------------------------------------------------
T ss_pred             cCCc----------------------------------------------------------------------------
Confidence            3100                                                                            


Q ss_pred             cccccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccccc--------------
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR--------------  627 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~--------------  627 (730)
                      .......+||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+....+.+..+......              
T Consensus       191 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (329)
T 3gbz_A          191 IRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPD  270 (329)
T ss_dssp             ---------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTT
T ss_pred             ccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhh
Confidence            00112347899999999998855 899999999999999999999999987665555444321100              


Q ss_pred             ----CCCC----------CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          628 ----FPDS----------PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       628 ----~p~~----------~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                          ++..          ..++.++++||.+||.+||.+||+    ++|+++||||++++|.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~hp~f~~~~~~  328 (329)
T 3gbz_A          271 WKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRIS----AKNALEHPYFSHNDFD  328 (329)
T ss_dssp             CCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCC----HHHHHTSGGGSSSCSC
T ss_pred             hhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCC----HHHHhCCcccCCCCCC
Confidence                0000          115788999999999999999999    7999999999999985

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=1.7e-48  Score=423.84  Aligned_cols=256  Identities=27%  Similarity=0.433  Sum_probs=211.9

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ..++|++++.||+|+||+||+++++.+++.||||++.+.....    ..+++|+.+++.++||||++++++|.+...+|+
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l   93 (361)
T 3uc3_A           18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAID----ENVQREIINHRSLRHPNIVRFKEVILTPTHLAI   93 (361)
T ss_dssp             CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSC----HHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcccc----HHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEE
Confidence            4578999999999999999999999999999999997654322    346789999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc--eEEecccccccccCC
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH--IMLSDFDLSLRCAVS  486 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~--vKL~DFGlA~~~~~~  486 (730)
                      |||||+||+|..++...  +.+++..++.++.||+.||.|||++||+||||||+||||+.++.  +||+|||+++.... 
T Consensus        94 v~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~-  170 (361)
T 3uc3_A           94 IMEYASGGELYERICNA--GRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL-  170 (361)
T ss_dssp             EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC------
T ss_pred             EEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCccccccc-
Confidence            99999999999988664  57999999999999999999999999999999999999987765  99999999842100 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                  ....
T Consensus       171 ----------------------------------------------------------------------------~~~~  174 (361)
T 3uc3_A          171 ----------------------------------------------------------------------------HSQP  174 (361)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------------------------------------------------cCCC
Confidence                                                                                        0011


Q ss_pred             cccccCcccCChhhhccCCCCCc-ceeechhHHHHHHhhCCCCCCCCCCccceee----eecccccCCCCCCCChhHHHH
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSA-VDWWTFGIFLHELLYGKTPFKGSGNRATLFN----VVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~-sDIWSLG~iLyELltG~~PF~g~~~~~~l~~----i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      ...+||+.|+|||++.+..+..+ +|||||||++|+|++|+.||.+......+..    +......+|....++.++++|
T Consensus       175 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  254 (361)
T 3uc3_A          175 KSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHL  254 (361)
T ss_dssp             ------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHHHH
T ss_pred             CCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHHHH
Confidence            23579999999999999888655 8999999999999999999988655433333    344556667766789999999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |++||.+||.+||+    +.|+++||||..
T Consensus       255 i~~~L~~dP~~Rps----~~ell~hp~f~~  280 (361)
T 3uc3_A          255 ISRIFVADPATRIS----IPEIKTHSWFLK  280 (361)
T ss_dssp             HHHHSCSCTTTSCC----HHHHHTSHHHHT
T ss_pred             HHHHccCChhHCcC----HHHHHhCcchhc
Confidence            99999999999999    799999999954

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.6e-48  Score=416.73  Aligned_cols=270  Identities=31%  Similarity=0.486  Sum_probs=223.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh--hHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA--SRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~--~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ++|++++.||+|+||+||+|++..+++.||+|++.+....  .......+.+|+++|+.++||||++++++|.+++.+||
T Consensus        26 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l  105 (345)
T 3hko_A           26 KKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICL  105 (345)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             hheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCeEEE
Confidence            6799999999999999999999999999999999876432  23455678999999999999999999999999999999


Q ss_pred             EeeecCCCCcccccccc--------------------------------------CCCCccHHHHHHhHHHHHHHHHHhH
Q 004790          409 VMEYCPGGDLHTLRQRQ--------------------------------------PGKHFSEYAARFYAAEVLLALEYLH  450 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~--------------------------------------~~~~lse~~a~~~~~qIl~AL~yLH  450 (730)
                      |||||+||+|.+++...                                      ....+++..++.++.||+.||+|||
T Consensus       106 v~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH  185 (345)
T 3hko_A          106 VMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLH  185 (345)
T ss_dssp             EEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            99999999998877521                                      0123578889999999999999999


Q ss_pred             hcceeecccCCccEEecCCC--ceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCcc
Q 004790          451 MLGVVYRDLKPENVLVRDDG--HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFI  528 (730)
Q Consensus       451 ~~gIVHRDLKPeNILl~~~g--~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~  528 (730)
                      ++||+||||||+||||+.++  .+||+|||++..+......                                       
T Consensus       186 ~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~---------------------------------------  226 (345)
T 3hko_A          186 NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNG---------------------------------------  226 (345)
T ss_dssp             HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC---------------------------------------
T ss_pred             HCCccccCCChhhEEEecCCCceEEEeeccccccccccCcc---------------------------------------
Confidence            99999999999999998776  8999999998543110000                                       


Q ss_pred             CcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhcc--CCCCCcceeechhHHHHHHhhCC
Q 004790          529 PRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKG--EGHGSAVDWWTFGIFLHELLYGK  606 (730)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g--~~~~~~sDIWSLG~iLyELltG~  606 (730)
                                                       ........+||+.|+|||++.+  ..++.++|||||||++|||++|+
T Consensus       227 ---------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~  273 (345)
T 3hko_A          227 ---------------------------------EYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGA  273 (345)
T ss_dssp             -----------------------------------------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             ---------------------------------ccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence                                             0001123579999999999976  56899999999999999999999


Q ss_pred             CCCCCCCCccceeeeecccccCCCC--CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          607 TPFKGSGNRATLFNVVGQQLRFPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       607 ~PF~g~~~~~~l~~i~~~~~~~p~~--~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                      .||.+....+.+.++......++..  ..++.++++||.+||..||.+||+    +.++++||||+++.|..
T Consensus       274 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps----~~~~l~hp~~~~~~~~~  341 (345)
T 3hko_A          274 VPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFD----AMRALQHPWISQFSDKI  341 (345)
T ss_dssp             CSSCCSSHHHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCC----HHHHHHSHHHHTTSSCS
T ss_pred             CCCCCCChHHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCC----HHHHhcChhhccChHhh
Confidence            9999887777666666655544432  347899999999999999999999    79999999999887654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=1.9e-48  Score=440.19  Aligned_cols=262  Identities=28%  Similarity=0.450  Sum_probs=229.4

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      .+.+..++|.+++.||+|+||+||+|++..+++.||||++++...........+.+|+.+|+.++||||+++++++.+..
T Consensus        10 ~~~~~~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~   89 (476)
T 2y94_A           10 DGRVKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPS   89 (476)
T ss_dssp             CSCCEETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             CCCceecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence            44566789999999999999999999999999999999998765544445667899999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|||||||+||+|.+++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.++++||+|||++....
T Consensus        90 ~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~  167 (476)
T 2y94_A           90 DIFMVMEYVSGGELFDYICKN--GRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS  167 (476)
T ss_dssp             EEEEEEECCSSEEHHHHTTSS--SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred             EEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhcc
Confidence            999999999999999988754  579999999999999999999999999999999999999999999999999985321


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      .                                                                             ..
T Consensus       168 ~-----------------------------------------------------------------------------~~  170 (476)
T 2y94_A          168 D-----------------------------------------------------------------------------GE  170 (476)
T ss_dssp             T-----------------------------------------------------------------------------TC
T ss_pred             c-----------------------------------------------------------------------------cc
Confidence            0                                                                             00


Q ss_pred             cccccccCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ...+.+||+.|+|||++.+..+ +.++|||||||++|+|++|+.||.+.+....+.++..+.+..|  ..++.++++||+
T Consensus       171 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~Li~  248 (476)
T 2y94_A          171 FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTP--QYLNPSVISLLK  248 (476)
T ss_dssp             CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTCCCCC--TTCCHHHHHHHH
T ss_pred             cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCcCCC--ccCCHHHHHHHH
Confidence            1123589999999999999876 7899999999999999999999998776666666666655444  457899999999


Q ss_pred             hhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          644 GLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       644 ~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      +||..||.+||+    ++++++||||+.
T Consensus       249 ~~L~~dP~~Rpt----~~eil~hp~~~~  272 (476)
T 2y94_A          249 HMLQVDPMKRAT----IKDIREHEWFKQ  272 (476)
T ss_dssp             HHTCSSTTTSCC----HHHHHTCHHHHT
T ss_pred             HHcCCCchhCcC----HHHHHhCHHhhh
Confidence            999999999999    799999999975

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-48  Score=411.46  Aligned_cols=264  Identities=25%  Similarity=0.368  Sum_probs=209.2

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhh--HHHHHHHHHHHHHHHhc---CCCCCcccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS--RKKLTRAQTEREILQLL---DHPFLPTLYTHFE  401 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~--~~~~~~~~~E~~IL~~L---~HPnIV~L~~~f~  401 (730)
                      .+..++|++++.||+|+||+||+|++..+++.||||++.......  ......+.+|+.+++.+   +||||++++++|.
T Consensus         5 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~   84 (308)
T 3g33_A            5 SMATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCA   84 (308)
T ss_dssp             -----CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEE
T ss_pred             cccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeee
Confidence            345689999999999999999999999999999999997532111  01112345677777665   5999999999997


Q ss_pred             ccc-----eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEec
Q 004790          402 TDR-----FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSD  476 (730)
Q Consensus       402 ~~~-----~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~D  476 (730)
                      +..     .+|+||||+. ++|..++.......+++..++.++.||+.||+|||++||+||||||+|||++.++++||+|
T Consensus        85 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~D  163 (308)
T 3g33_A           85 TSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLAD  163 (308)
T ss_dssp             ECCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECS
T ss_pred             ccCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEee
Confidence            654     5899999995 6999988877556699999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcc
Q 004790          477 FDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPE  556 (730)
Q Consensus       477 FGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (730)
                      ||++.....                                                                       
T Consensus       164 fg~a~~~~~-----------------------------------------------------------------------  172 (308)
T 3g33_A          164 FGLARIYSY-----------------------------------------------------------------------  172 (308)
T ss_dssp             CSCTTTSTT-----------------------------------------------------------------------
T ss_pred             CccccccCC-----------------------------------------------------------------------
Confidence            999843210                                                                       


Q ss_pred             cccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccccc---------
Q 004790          557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR---------  627 (730)
Q Consensus       557 ~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~---------  627 (730)
                            .......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+.++......         
T Consensus       173 ------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  246 (308)
T 3g33_A          173 ------QMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRD  246 (308)
T ss_dssp             ------CCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSS
T ss_pred             ------CcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccch
Confidence                  00112358999999999999999999999999999999999999999887665554443321100         


Q ss_pred             -------CC---------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          628 -------FP---------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       628 -------~p---------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                             ++         ..+.++.++.+||.+||.+||.+||+    +.|+|+||||+..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~h~~~~~~  303 (308)
T 3g33_A          247 VSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRIS----AFRALQHSYLHKD  303 (308)
T ss_dssp             CSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCC----HHHHHTSTTC---
T ss_pred             hhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCC----HHHHhcCccccCC
Confidence                   00         01356789999999999999999999    7999999999864

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.7e-48  Score=407.87  Aligned_cols=260  Identities=24%  Similarity=0.389  Sum_probs=209.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +++|++++.||+|+||+||+|++ .+++.||+|++...... ......+.+|+++|+.++||||+++++++.+++.+|+|
T Consensus         1 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   78 (288)
T 1ob3_A            1 MEKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKED-EGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLV   78 (288)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGG-GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEE
T ss_pred             CccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccc-cccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEE
Confidence            46899999999999999999999 67889999999754322 12234577899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+.+ +|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||++......   
T Consensus        79 ~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---  153 (288)
T 1ob3_A           79 FEHLDQ-DLKKLLDVC-EGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP---  153 (288)
T ss_dssp             EECCSE-EHHHHHHTS-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred             EEecCC-CHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCcc---
Confidence            999964 888877653 256899999999999999999999999999999999999999999999999998542100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       154 -------------------------------------------------------------------------~~~~~~~  160 (288)
T 1ob3_A          154 -------------------------------------------------------------------------VRKYTHE  160 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0011234


Q ss_pred             ccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc--------------c----cCC-
Q 004790          570 VGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ--------------L----RFP-  629 (730)
Q Consensus       570 vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~--------------~----~~p-  629 (730)
                      +||+.|+|||++.+. .++.++|||||||++|||++|+.||.+....+.+.++....              .    .++ 
T Consensus       161 ~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (288)
T 1ob3_A          161 IVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTV  240 (288)
T ss_dssp             -CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCC
T ss_pred             cccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccccccccccc
Confidence            789999999999875 48999999999999999999999998865544433322100              0    000 


Q ss_pred             --------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          630 --------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       630 --------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                              ....++.++++||++||..||++||+    ++|+++||||++.|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~e~l~hp~f~~~n  288 (288)
T 1ob3_A          241 YEPLPWESFLKGLDESGIDLLSKMLKLDPNQRIT----AKQALEHAYFKENN  288 (288)
T ss_dssp             CCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCC----HHHHHTSGGGGC--
T ss_pred             ccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCC----HHHHhcCcchhhcC
Confidence                    01346889999999999999999999    79999999998753

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=1.2e-47  Score=398.62  Aligned_cols=263  Identities=25%  Similarity=0.446  Sum_probs=226.6

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||.||+|.++.+++.||+|++...... ......+.+|+.+++.++||||+++++++.++...|+|
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   83 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   83 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCC-HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence            47899999999999999999999999999999999776543 34556788999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc---eEEecccccccccCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH---IMLSDFDLSLRCAVS  486 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~---vKL~DFGlA~~~~~~  486 (730)
                      |||++|++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.   +||+|||++......
T Consensus        84 ~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~  161 (284)
T 3kk8_A           84 FDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS  161 (284)
T ss_dssp             ECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSS
T ss_pred             EecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccC
Confidence            9999999998877655  56999999999999999999999999999999999999987655   999999998432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       162 -----------------------------------------------------------------------------~~~  164 (284)
T 3kk8_A          162 -----------------------------------------------------------------------------EAW  164 (284)
T ss_dssp             -----------------------------------------------------------------------------CBC
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         001


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHHHHHh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRDLIRG  644 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~dLI~~  644 (730)
                      ....||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.........+......++.  ...++.++++||.+
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  244 (284)
T 3kk8_A          165 HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDS  244 (284)
T ss_dssp             CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHH
T ss_pred             cCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHHHH
Confidence            1347999999999999999999999999999999999999999887666555555555544443  35678999999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                      ||..||.+||+    ++|+++||||++..+..
T Consensus       245 ~l~~dp~~Rps----~~~~l~h~~~~~~~~~~  272 (284)
T 3kk8_A          245 MLTVNPKKRIT----ADQALKVPWICNRERVA  272 (284)
T ss_dssp             HSCSSTTTSCC----HHHHTTSHHHHSCCCGG
T ss_pred             HcccChhhCCC----HHHHhcCccccCChhHH
Confidence            99999999999    79999999999876654

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=3.7e-48  Score=411.91  Aligned_cols=264  Identities=30%  Similarity=0.441  Sum_probs=226.2

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH---HHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR---KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~---~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .++|++++.||+|+||.||+|++..+++.||+|++.+......   ...+.+.+|+.+|+.++||||++++++|.++..+
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV   90 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            3679999999999999999999999999999999976543211   1245678999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC----ceEEeccccccc
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG----HIMLSDFDLSLR  482 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g----~vKL~DFGlA~~  482 (730)
                      |+||||++|++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++    ++||+|||++..
T Consensus        91 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~  168 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTC--SCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEE
T ss_pred             EEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCcccee
Confidence            9999999999999988764  5799999999999999999999999999999999999999888    899999999854


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ....                                                                            
T Consensus       169 ~~~~----------------------------------------------------------------------------  172 (321)
T 2a2a_A          169 IEDG----------------------------------------------------------------------------  172 (321)
T ss_dssp             CCTT----------------------------------------------------------------------------
T ss_pred             cCcc----------------------------------------------------------------------------
Confidence            2100                                                                            


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRD  640 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~d  640 (730)
                       ......+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+......+.++......++.  ....+..+++
T Consensus       173 -~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  251 (321)
T 2a2a_A          173 -VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKD  251 (321)
T ss_dssp             -CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHH
T ss_pred             -ccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccccChhhhcccCHHHHH
Confidence             0011347999999999999999999999999999999999999999987666665555554444332  1457889999


Q ss_pred             HHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          641 LIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                      ||.+||..||.+||+    ++++++||||..++|..
T Consensus       252 li~~~l~~dp~~Rps----~~e~l~hp~~~~~~~~~  283 (321)
T 2a2a_A          252 FIRKLLVKETRKRLT----IQEALRHPWITPVDNQQ  283 (321)
T ss_dssp             HHHTTSCSSTTTSCC----HHHHHHSTTTSCSSHHH
T ss_pred             HHHHHcCCChhhCcC----HHHHhcCccccCCCccc
Confidence            999999999999999    79999999999998864

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.4e-48  Score=407.52  Aligned_cols=264  Identities=28%  Similarity=0.443  Sum_probs=214.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +++|++++.||+|+||+||+|++..+++.||||++.... ........+.+|+++|+.++||||++++++|.+++.+|+|
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESE-DDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLV   80 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCC-C-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccc-cchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEE
Confidence            478999999999999999999999999999999986653 2334456788999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+++++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......   
T Consensus        81 ~e~~~~~~l~~~~~~~--~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---  155 (311)
T 4agu_A           81 FEYCDHTVLHELDRYQ--RGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGP---  155 (311)
T ss_dssp             EECCSEEHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             EEeCCCchHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCc---
Confidence            9999999998877654  56999999999999999999999999999999999999999999999999998542100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       156 -------------------------------------------------------------------------~~~~~~~  162 (311)
T 4agu_A          156 -------------------------------------------------------------------------SDYYDDE  162 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------------------------------------------------------------ccccCCC
Confidence                                                                                     0011134


Q ss_pred             ccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-------------------cccCC
Q 004790          570 VGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-------------------QLRFP  629 (730)
Q Consensus       570 vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-------------------~~~~p  629 (730)
                      +||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+....+.+..+...                   ....+
T Consensus       163 ~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (311)
T 4agu_A          163 VATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIP  242 (311)
T ss_dssp             ---GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCC
T ss_pred             cCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCC
Confidence            78999999999987 56799999999999999999999999887654433222110                   01111


Q ss_pred             C----------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          630 D----------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       630 ~----------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                      .          .+.++.++.+||.+||..||.+|||    ++|+++||||+++.|..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~f~~~~~~~  295 (311)
T 4agu_A          243 DPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLT----CEQLLHHPYFENIREIE  295 (311)
T ss_dssp             CCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCC----HHHHHTSGGGTTCC---
T ss_pred             CccccchhhhhcccccHHHHHHHHHHccCChhhcCC----HHHHhcChHHHhccCHH
Confidence            1          1357888999999999999999999    79999999999987653

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=1.9e-47  Score=425.16  Aligned_cols=287  Identities=25%  Similarity=0.342  Sum_probs=213.6

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc-----c
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD-----R  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~-----~  404 (730)
                      .++|++++.||+|+||.||+|+++.+++.||||++.+.. .......++.+|+++|+.++||||+++++++...     .
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  103 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF-EDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD  103 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTT-TSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchh-cChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence            478999999999999999999999999999999997643 3445567889999999999999999999999766     6


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+||||||+ +++|..++...  ..+++..++.|++||+.||.|||++||+||||||+||||+.++++||+|||+|+...
T Consensus       104 ~~~lv~e~~-~~~L~~~~~~~--~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~  180 (432)
T 3n9x_A          104 ELYIVLEIA-DSDLKKLFKTP--IFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTIN  180 (432)
T ss_dssp             CEEEEEECC-SEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC-
T ss_pred             eEEEEEecC-CcCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCccccc
Confidence            799999999 56999888754  579999999999999999999999999999999999999999999999999997542


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ...........         .+.     .  .                                      +.........
T Consensus       181 ~~~~~~~~~~~---------~~~-----~--~--------------------------------------~~~~~~~~~~  206 (432)
T 3n9x_A          181 SEKDTNIVNDL---------EEN-----E--E--------------------------------------PGPHNKNLKK  206 (432)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccc---------ccc-----c--c--------------------------------------ccccccchhc
Confidence            21110000000         000     0  0                                      0000000111


Q ss_pred             cccccccCcccCChhhh-ccCCCCCcceeechhHHHHHHhhC-----------CCCCCCCCCc-----------------
Q 004790          565 RSMSFVGTHEYLAPEII-KGEGHGSAVDWWTFGIFLHELLYG-----------KTPFKGSGNR-----------------  615 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl-~g~~~~~~sDIWSLG~iLyELltG-----------~~PF~g~~~~-----------------  615 (730)
                      .....+||++|+|||++ .+..|+.++|||||||+||||++|           +++|.+.+..                 
T Consensus       207 ~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~  286 (432)
T 3n9x_A          207 QLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNR  286 (432)
T ss_dssp             ----CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC----------CHHHHH
T ss_pred             cccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccccccccccccCCCccccccCcccccccccccchH
Confidence            23467999999999997 455699999999999999999984           4455443210                 


Q ss_pred             cceeeee---c---------------------ccccCC-----CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          616 ATLFNVV---G---------------------QQLRFP-----DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       616 ~~l~~i~---~---------------------~~~~~p-----~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      +++..++   +                     .....+     ..+.++.++.+||++||..||.+|||    ++|+|+|
T Consensus       287 ~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t----a~e~L~H  362 (432)
T 3n9x_A          287 DQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRIT----IDQALDH  362 (432)
T ss_dssp             HHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSCC----HHHHHTC
T ss_pred             HHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCCC----HHHHhcC
Confidence            0000000   0                     000000     01457899999999999999999999    7999999


Q ss_pred             CCCCCCCcchhc
Q 004790          667 PFFEGVNWALIR  678 (730)
Q Consensus       667 PfF~~v~w~~~r  678 (730)
                      |||++++|....
T Consensus       363 p~f~~~~~~~~e  374 (432)
T 3n9x_A          363 PYLKDVRKKKLE  374 (432)
T ss_dssp             GGGTTTCCTTTC
T ss_pred             hhhhhccCcccC
Confidence            999999987653

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=1.2e-48  Score=422.63  Aligned_cols=257  Identities=29%  Similarity=0.477  Sum_probs=215.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~L  408 (730)
                      .++|++++.||+|+||+||+|+++.+++.||||++++....       ..+|+++|..+ +||||++++++|+++..+|+
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-------~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~l   93 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD-------PTEEIEILLRYGQHPNIITLKDVYDDGKYVYV   93 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC-------CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEE
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC-------hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEE
Confidence            46799999999999999999999999999999999875422       34688888877 89999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC----CceEEeccccccccc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD----GHIMLSDFDLSLRCA  484 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~----g~vKL~DFGlA~~~~  484 (730)
                      |||||+||+|.+++.+.  +.+++..++.++.||+.||+|||++||+||||||+|||+..+    +++||+|||+++...
T Consensus        94 v~E~~~gg~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~  171 (342)
T 2qr7_A           94 VTELMKGGELLDKILRQ--KFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLR  171 (342)
T ss_dssp             EECCCCSCBHHHHHHTC--TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECB
T ss_pred             EEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCc
Confidence            99999999999988765  579999999999999999999999999999999999998442    359999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                            ..
T Consensus       172 ~~----------------------------------------------------------------------------~~  175 (342)
T 2qr7_A          172 AE----------------------------------------------------------------------------NG  175 (342)
T ss_dssp             CT----------------------------------------------------------------------------TC
T ss_pred             CC----------------------------------------------------------------------------CC
Confidence            00                                                                            00


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCC---ccceeeeecccccCC--CCCCCChhHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN---RATLFNVVGQQLRFP--DSPATSYASR  639 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~---~~~l~~i~~~~~~~p--~~~~~s~~~~  639 (730)
                      ...+.+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+...   ...+..+..+.+.++  .+..++.+++
T Consensus       176 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  255 (342)
T 2qr7_A          176 LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAK  255 (342)
T ss_dssp             CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHH
T ss_pred             ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHH
Confidence            11245899999999999998899999999999999999999999986422   223333444444443  2356899999


Q ss_pred             HHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchh
Q 004790          640 DLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~  677 (730)
                      +||++||..||++||+    +.++++||||.  +|..+
T Consensus       256 ~li~~~L~~dP~~R~t----~~~il~hp~~~--~~~~~  287 (342)
T 2qr7_A          256 DLVSKMLHVDPHQRLT----AALVLRHPWIV--HWDQL  287 (342)
T ss_dssp             HHHHHHTCSSTTTSCC----HHHHTTSHHHH--TGGGS
T ss_pred             HHHHHHCCCChhHCcC----HHHHhcCCeec--Ccccc
Confidence            9999999999999999    79999999996  46654

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=9e-48  Score=398.76  Aligned_cols=260  Identities=31%  Similarity=0.544  Sum_probs=201.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||.||+|++..+++.||||++.+...........+.+|+.+++.++||||+++++++.+.+.+|+|
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            46899999999999999999999999999999999876544434456789999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+++++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++++||+|||++......   
T Consensus        90 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~---  165 (278)
T 3cok_A           90 LEMCHNGEMNRYLKNR-VKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP---  165 (278)
T ss_dssp             EECCTTEEHHHHHHTC-SSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC-----
T ss_pred             EecCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCC---
Confidence            9999999999887754 356899999999999999999999999999999999999999999999999998542100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       166 -------------------------------------------------------------------------~~~~~~~  172 (278)
T 3cok_A          166 -------------------------------------------------------------------------HEKHYTL  172 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------------------------------------------------------------CCcceec
Confidence                                                                                     0011234


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      +||+.|+|||++.+..++.++|||||||++|||++|+.||........+..+.......|  ..++.++++||.+||..|
T Consensus       173 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~d  250 (278)
T 3cok_A          173 CGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMP--SFLSIEAKDLIHQLLRRN  250 (278)
T ss_dssp             -------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----CCSSCCCCC--TTSCHHHHHHHHHHSCSS
T ss_pred             cCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHHhhcccCCc--cccCHHHHHHHHHHcccC
Confidence            789999999999999999999999999999999999999988766655555554444443  457899999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      |++||+    ++++++||||...
T Consensus       251 p~~Rps----~~~~l~h~~~~~~  269 (278)
T 3cok_A          251 PADRLS----LSSVLDHPFMSRN  269 (278)
T ss_dssp             GGGSCC----HHHHTTSTTTC--
T ss_pred             HhhCCC----HHHHhcCccccCC
Confidence            999999    7999999999863

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.3e-48  Score=415.66  Aligned_cols=263  Identities=26%  Similarity=0.417  Sum_probs=201.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|+++.+++.||+|+++.....  .....+.+|+++|+.++||||++++++|.+++.+|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   81 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEE--GTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLV   81 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTT--CSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccccc--ccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEE
Confidence            46899999999999999999999999999999999764321  2234577899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccC----CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          410 MEYCPGGDLHTLRQRQP----GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~----~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      |||++ |+|.+++....    ...+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+++....
T Consensus        82 ~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  160 (317)
T 2pmi_A           82 FEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGI  160 (317)
T ss_dssp             EECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETTS
T ss_pred             EEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecCC
Confidence            99996 68888765431    23589999999999999999999999999999999999999999999999999854210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      .                                                                            ...
T Consensus       161 ~----------------------------------------------------------------------------~~~  164 (317)
T 2pmi_A          161 P----------------------------------------------------------------------------VNT  164 (317)
T ss_dssp             C----------------------------------------------------------------------------CCC
T ss_pred             C----------------------------------------------------------------------------ccc
Confidence            0                                                                            000


Q ss_pred             ccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-------------------
Q 004790          566 SMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-------------------  625 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-------------------  625 (730)
                      ....+||+.|+|||++.+. .++.++|||||||++|||++|+.||.+.+....+..+....                   
T Consensus       165 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  244 (317)
T 2pmi_A          165 FSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNP  244 (317)
T ss_dssp             CCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCT
T ss_pred             CCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhccc
Confidence            1134789999999999875 58999999999999999999999998876544333322100                   


Q ss_pred             -------------ccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          626 -------------LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       626 -------------~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                                   +.......++.++++||++||..||++||+    ++|+++||||+++.|.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt----~~e~l~hp~f~~~~~~  303 (317)
T 2pmi_A          245 NIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLS----AKQALHHPWFAEYYHH  303 (317)
T ss_dssp             TCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCC----HHHHTTSGGGGGGCC-
T ss_pred             ccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCC----HHHHhCChhhhcccch
Confidence                         000011246789999999999999999999    7999999999987664

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=3.3e-48  Score=436.35  Aligned_cols=256  Identities=27%  Similarity=0.429  Sum_probs=207.8

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc-----
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD-----  403 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~-----  403 (730)
                      ..++|++++.||+|+||+||+|++..+++.||||++.+.. .......++.+|+.+|+.++||||++++++|...     
T Consensus        60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~  138 (464)
T 3ttj_A           60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF-QNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEE  138 (464)
T ss_dssp             EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGG-GSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTT
T ss_pred             ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccc-cChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCcccc
Confidence            3588999999999999999999999999999999997653 3345567789999999999999999999999654     


Q ss_pred             -ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          404 -RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       404 -~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                       ..+|||||||.++ |..++..    .+++..++.|++||+.||+|||++||+||||||+||||+.++++||+|||+|+.
T Consensus       139 ~~~~~lv~E~~~~~-l~~~~~~----~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~  213 (464)
T 3ttj_A          139 FQDVYLVMELMDAN-LCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  213 (464)
T ss_dssp             CCEEEEEEECCSEE-HHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC--
T ss_pred             CCeEEEEEeCCCCC-HHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeee
Confidence             4579999999654 6555543    489999999999999999999999999999999999999999999999999843


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ...                                                                             
T Consensus       214 ~~~-----------------------------------------------------------------------------  216 (464)
T 3ttj_A          214 AGT-----------------------------------------------------------------------------  216 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            210                                                                             


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc----------------
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL----------------  626 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~----------------  626 (730)
                      .......+||+.|+|||++.+..|+.++|||||||+||||++|+.||.+.+..+.+..++....                
T Consensus       217 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~  296 (464)
T 3ttj_A          217 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRN  296 (464)
T ss_dssp             CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHH
T ss_pred             CcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhh
Confidence            0011246899999999999999999999999999999999999999998765555444332100                


Q ss_pred             ------c---------CCCC--C-------CCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          627 ------R---------FPDS--P-------ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       627 ------~---------~p~~--~-------~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                            .         ++..  +       ..+.++++||++||.+||++|||    ++|+|+||||+.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t----a~e~L~Hp~~~~  361 (464)
T 3ttj_A          297 YVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRIS----VDDALQHPYINV  361 (464)
T ss_dssp             HHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCC----HHHHHTSTTTGG
T ss_pred             HhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCC----HHHHhcChhhhh
Confidence                  0         0000  0       00457899999999999999999    799999999984

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=3.3e-48  Score=414.17  Aligned_cols=266  Identities=28%  Similarity=0.411  Sum_probs=225.1

Q ss_pred             cCCeEEE-eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceee
Q 004790          330 MSHFRLL-KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       330 ~~~y~il-~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~  407 (730)
                      .++|.+. +.||+|+||.||+|++..+++.||+|++.+..... .....+.+|+.+|+.+ .||||++++++|.+...+|
T Consensus        27 ~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~  105 (327)
T 3lm5_A           27 NNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQ-DCRAEILHEIAVLELAKSCPRVINLHEVYENTSEII  105 (327)
T ss_dssp             HHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTE-ECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             hhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcch-HHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEE
Confidence            4568887 89999999999999999999999999997654322 2235678899999998 5699999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---CCceEEeccccccccc
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---DGHIMLSDFDLSLRCA  484 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~g~vKL~DFGlA~~~~  484 (730)
                      +||||+.||+|..++.......+++..++.++.||+.||+|||++||+||||||+|||++.   ++.+||+|||++....
T Consensus       106 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~  185 (327)
T 3lm5_A          106 LILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIG  185 (327)
T ss_dssp             EEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC-
T ss_pred             EEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccccccC
Confidence            9999999999999887665678999999999999999999999999999999999999987   7899999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                             .
T Consensus       186 ~~-----------------------------------------------------------------------------~  188 (327)
T 3lm5_A          186 HA-----------------------------------------------------------------------------C  188 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Cc-----------------------------------------------------------------------------c
Confidence            00                                                                             0


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC--CCCCCChhHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP--DSPATSYASRDLI  642 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p--~~~~~s~~~~dLI  642 (730)
                      .....+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+....+..+......++  ....++..+++||
T Consensus       189 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li  268 (327)
T 3lm5_A          189 ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFI  268 (327)
T ss_dssp             -----CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHH
T ss_pred             ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccCchhhcccCHHHHHHH
Confidence            01235799999999999999999999999999999999999999998776655555544333333  3356789999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchh
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~  677 (730)
                      .+||..||++||+    ++++++||||++++|..+
T Consensus       269 ~~~L~~dP~~Rpt----~~~ll~h~~~~~~~~~~~  299 (327)
T 3lm5_A          269 QSLLVKNPEKRPT----AEICLSHSWLQQWDFENL  299 (327)
T ss_dssp             HHHSCSSGGGSCC----HHHHTTCGGGCCCCTTCC
T ss_pred             HHHcCCChhhCcC----HHHHhCCHhhcccccccc
Confidence            9999999999999    799999999999999865

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=3.8e-48  Score=403.32  Aligned_cols=259  Identities=32%  Similarity=0.552  Sum_probs=225.6

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .+..++|++++.||+|+||.||+|++..++..||+|++.+...........+.+|+++++.++||||+++++++.+++.+
T Consensus        10 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   89 (284)
T 2vgo_A           10 KFTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRI   89 (284)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEE
T ss_pred             chhhhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEE
Confidence            35568999999999999999999999999999999999876544433456788999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++++||+|||++..... 
T Consensus        90 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~-  166 (284)
T 2vgo_A           90 YLMLEFAPRGELYKELQKH--GRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPS-  166 (284)
T ss_dssp             EEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSS-
T ss_pred             EEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCcc-
Confidence            9999999999999988765  4699999999999999999999999999999999999999999999999998843110 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       167 -----------------------------------------------------------------------------~~~  169 (284)
T 2vgo_A          167 -----------------------------------------------------------------------------LRR  169 (284)
T ss_dssp             -----------------------------------------------------------------------------SCB
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         001


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.........+......+|  ..++.++++||.+||
T Consensus       170 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l  247 (284)
T 2vgo_A          170 RTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFP--PFLSDGSKDLISKLL  247 (284)
T ss_dssp             CCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCC--TTSCHHHHHHHHHHS
T ss_pred             ccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhccccCCC--CcCCHHHHHHHHHHh
Confidence            134789999999999999999999999999999999999999988766555555555554444  457899999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ..||.+||+    ++++++||||+.
T Consensus       248 ~~~p~~Rps----~~~ll~h~~~~~  268 (284)
T 2vgo_A          248 RYHPPQRLP----LKGVMEHPWVKA  268 (284)
T ss_dssp             CSSGGGSCC----HHHHHTCHHHHH
T ss_pred             hcCHhhCCC----HHHHhhCHHHHh
Confidence            999999999    799999999985

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=8.1e-48  Score=416.34  Aligned_cols=258  Identities=32%  Similarity=0.449  Sum_probs=208.7

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ..++|++.+.||+|+||+||+|++..+++.||||++.+..     ..+.+.+|+++|+.++||||++++++|.+...+|+
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  125 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISL  125 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC---------------CHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-----hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEE
Confidence            3468999999999999999999999999999999997642     23457789999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---CCceEEecccccccccC
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---DGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~g~vKL~DFGlA~~~~~  485 (730)
                      ||||++||+|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.   ++.+||+|||+++....
T Consensus       126 v~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~  203 (349)
T 2w4o_A          126 VLELVTGGELFDRIVEK--GYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEH  203 (349)
T ss_dssp             EECCCCSCBHHHHHTTC--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC-------
T ss_pred             EEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCc
Confidence            99999999999887654  56999999999999999999999999999999999999975   89999999999843210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                                                                                                   ...
T Consensus       204 -----------------------------------------------------------------------------~~~  206 (349)
T 2w4o_A          204 -----------------------------------------------------------------------------QVL  206 (349)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         001


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc-ceeeeecccccCC--CCCCCChhHHHHH
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA-TLFNVVGQQLRFP--DSPATSYASRDLI  642 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~-~l~~i~~~~~~~p--~~~~~s~~~~dLI  642 (730)
                      ....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+..... .+..+......++  ....++.++++||
T Consensus       207 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li  286 (349)
T 2w4o_A          207 MKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLV  286 (349)
T ss_dssp             ------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHH
T ss_pred             cccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCHHHHHHH
Confidence            123579999999999999999999999999999999999999998765544 3334444443332  3356789999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      ++||..||++||+    +.++++||||.+..+
T Consensus       287 ~~~L~~dP~~Rpt----~~e~l~hp~~~~~~~  314 (349)
T 2w4o_A          287 RKLIVLDPKKRLT----TFQALQHPWVTGKAA  314 (349)
T ss_dssp             HTTSCSSGGGSCC----HHHHHHSTTTTSTTC
T ss_pred             HHHccCChhhCcC----HHHHhcCcccCCCcc
Confidence            9999999999999    799999999997553

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-47  Score=422.72  Aligned_cols=261  Identities=28%  Similarity=0.416  Sum_probs=223.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|.++.+++.||+|++.+...   .....+.+|+++|+.++||||++++++|.++..+|||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  126 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP---LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  126 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH---HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccch---hhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEE
Confidence            4689999999999999999999999999999999976542   2234678999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC--CCceEEecccccccccCCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD--DGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~--~g~vKL~DFGlA~~~~~~~  487 (730)
                      ||||.||+|.+++... ...+++..++.++.||+.||+|||++||+||||||+|||++.  ++++||+|||+++..... 
T Consensus       127 ~E~~~gg~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~-  204 (387)
T 1kob_A          127 LEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD-  204 (387)
T ss_dssp             EECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT-
T ss_pred             EEcCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCC-
Confidence            9999999999887654 346999999999999999999999999999999999999974  578999999998542100 


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                  ....
T Consensus       205 ----------------------------------------------------------------------------~~~~  208 (387)
T 1kob_A          205 ----------------------------------------------------------------------------EIVK  208 (387)
T ss_dssp             ----------------------------------------------------------------------------SCEE
T ss_pred             ----------------------------------------------------------------------------ccee
Confidence                                                                                        0012


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHHHHHhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRDLIRGL  645 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~dLI~~l  645 (730)
                      ..+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+.++....+.++.  ...++.++++||.+|
T Consensus       209 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  288 (387)
T 1kob_A          209 VTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNL  288 (387)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTT
T ss_pred             eeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHH
Confidence            347999999999999999999999999999999999999999987666666555554444432  346789999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      |..||.+||+    +.++++||||++..+.
T Consensus       289 L~~dP~~Rpt----~~ell~hp~~~~~~~~  314 (387)
T 1kob_A          289 LQKEPRKRLT----VHDALEHPWLKGDHSN  314 (387)
T ss_dssp             SCSSGGGSCC----HHHHHTSTTTSSCCTT
T ss_pred             cCCChhHCcC----HHHHhhCccccCCccc
Confidence            9999999999    7999999999976543

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=6.1e-48  Score=425.63  Aligned_cols=253  Identities=27%  Similarity=0.423  Sum_probs=207.7

Q ss_pred             cCCeEEE-eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHH-HhcCCCCCccccccccc----c
Q 004790          330 MSHFRLL-KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPTLYTHFET----D  403 (730)
Q Consensus       330 ~~~y~il-~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL-~~L~HPnIV~L~~~f~~----~  403 (730)
                      .++|.++ +.||+|+||+||+|+++.+++.||||++++.        ..+.+|++++ +.++||||++++++|+.    .
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~--------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~  131 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYENLYAGR  131 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc--------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCC
Confidence            4678887 7899999999999999999999999999643        2356788887 45699999999999875    7


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---CCceEEeccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---DGHIMLSDFDLS  480 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~g~vKL~DFGlA  480 (730)
                      ..+|||||||+||+|.+++.......+++..++.|+.||+.||.|||++|||||||||+||||+.   ++.+||+|||++
T Consensus       132 ~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a  211 (400)
T 1nxk_A          132 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA  211 (400)
T ss_dssp             EEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred             cEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccc
Confidence            78999999999999999988765567999999999999999999999999999999999999987   789999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +....                                                                           
T Consensus       212 ~~~~~---------------------------------------------------------------------------  216 (400)
T 1nxk_A          212 KETTS---------------------------------------------------------------------------  216 (400)
T ss_dssp             EECC----------------------------------------------------------------------------
T ss_pred             cccCC---------------------------------------------------------------------------
Confidence            53210                                                                           


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccc----eeeeecccccCC--CCCCC
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT----LFNVVGQQLRFP--DSPAT  634 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~----l~~i~~~~~~~p--~~~~~  634 (730)
                        .....+.+||+.|+|||++.+..|+.++|||||||+||||++|+.||.+......    ...+..+.+.++  .+..+
T Consensus       217 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  294 (400)
T 1nxk_A          217 --HNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEV  294 (400)
T ss_dssp             ------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTS
T ss_pred             --CCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccC
Confidence              0011245899999999999999999999999999999999999999987654332    223334444444  33568


Q ss_pred             ChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          635 SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       635 s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      +.++++||++||..||.+||+    +.++++||||..
T Consensus       295 s~~~~~li~~~L~~dP~~Rpt----~~eil~hp~~~~  327 (400)
T 1nxk_A          295 SEEVKMLIRNLLKTEPTQRMT----ITEFMNHPWIMQ  327 (400)
T ss_dssp             CHHHHHHHHTTSCSSGGGSCC----HHHHHHSHHHHT
T ss_pred             CHHHHHHHHHHCCCChhHCcC----HHHHhcCccccC
Confidence            999999999999999999999    799999999975

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-47  Score=418.12  Aligned_cols=258  Identities=29%  Similarity=0.424  Sum_probs=210.7

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc-----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR-----  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~-----  404 (730)
                      .++|++++.||+|+||.||+|++..+++.||||++.+.. .......++.+|+++|+.++||||++++++|....     
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  102 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF-QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF  102 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTT-SSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccc-cCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence            478999999999999999999999999999999996543 33455677899999999999999999999997653     


Q ss_pred             -eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          405 -FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       405 -~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                       .+|+||||+ |++|..++...   .+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+++..
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~~---~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  178 (367)
T 1cm8_A          103 TDFYLVMPFM-GTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQA  178 (367)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             ceEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeeccccc
Confidence             469999999 89999988763   6899999999999999999999999999999999999999999999999998531


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                              
T Consensus       179 ~~------------------------------------------------------------------------------  180 (367)
T 1cm8_A          179 DS------------------------------------------------------------------------------  180 (367)
T ss_dssp             CS------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             ccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc----------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL----------------  626 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~----------------  626 (730)
                       .....+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.+....+..++....                
T Consensus       181 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~  259 (367)
T 1cm8_A          181 -EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAK  259 (367)
T ss_dssp             -SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHH
T ss_pred             -ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHH
Confidence             0123578999999999988 6799999999999999999999999998765554443322100                


Q ss_pred             ------------cC-CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          627 ------------RF-PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       627 ------------~~-p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                                  .+ ......+.++.+||.+||..||.+|+|    ++++|+||||+.+.+.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t----~~e~l~hp~f~~~~~~  317 (367)
T 1cm8_A          260 NYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVT----AGEALAHPYFESLHDT  317 (367)
T ss_dssp             HHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCC----HHHHHHSGGGTTTC--
T ss_pred             HHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCC----HHHHhcChHHHhhcCC
Confidence                        00 011356889999999999999999999    7999999999987653

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=4.3e-48  Score=423.03  Aligned_cols=258  Identities=29%  Similarity=0.455  Sum_probs=216.8

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeee
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEY  412 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy  412 (730)
                      |...+.||+|+||.||+|++..+++.||+|+++....   ...+.+.+|+++|+.++||||++++++|.+.+.+||||||
T Consensus        91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~  167 (373)
T 2x4f_A           91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGM---KDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEY  167 (373)
T ss_dssp             EEEEEECC-----CEEEEEETTTCCEEEEEEEECCSH---HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             eecceEEecCcCEEEEEEEEcCCCcEEEEEEEccccc---ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeC
Confidence            3346789999999999999999999999999987543   3345688999999999999999999999999999999999


Q ss_pred             cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe--cCCCceEEecccccccccCCCccc
Q 004790          413 CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV--RDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       413 ~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl--~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |+|++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||+  +.++++||+|||+++.....    
T Consensus       168 ~~~~~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~----  242 (373)
T 2x4f_A          168 VDGGELFDRIIDE-SYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPR----  242 (373)
T ss_dssp             CTTCEEHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTT----
T ss_pred             CCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCc----
Confidence            9999998877643 2468999999999999999999999999999999999999  56789999999998542100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                               ......+
T Consensus       243 -------------------------------------------------------------------------~~~~~~~  249 (373)
T 2x4f_A          243 -------------------------------------------------------------------------EKLKVNF  249 (373)
T ss_dssp             -------------------------------------------------------------------------CBCCCCC
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0011247


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHHHHHhhhcC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRDLIRGLLVK  648 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~dLI~~lL~~  648 (730)
                      ||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+.++....+.++.  ...++.++++||.+||..
T Consensus       250 gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~  329 (373)
T 2x4f_A          250 GTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIK  329 (373)
T ss_dssp             SSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCS
T ss_pred             CCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999988777777666665554443  246789999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      ||.+||+    +.|+++||||++..|.
T Consensus       330 dp~~Rps----~~e~l~hp~~~~~~~~  352 (373)
T 2x4f_A          330 EKSWRIS----ASEALKHPWLSDHKLH  352 (373)
T ss_dssp             SGGGSCC----HHHHHHSHHHHCHHHH
T ss_pred             ChhhCCC----HHHHhcCcCcCCCchh
Confidence            9999999    7999999999987764

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.7e-48  Score=438.50  Aligned_cols=263  Identities=31%  Similarity=0.462  Sum_probs=227.6

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ...++|++++.||+|+||+||+|+++.+++.||||++.+...........+.+|+.+|+.++||||++++++|.+...+|
T Consensus        23 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  102 (484)
T 3nyv_A           23 IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFY  102 (484)
T ss_dssp             CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             cccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            34468999999999999999999999999999999998765443344567889999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe---cCCCceEEeccccccccc
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV---RDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl---~~~g~vKL~DFGlA~~~~  484 (730)
                      +|||||.||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||+   +.++.+||+|||++..+.
T Consensus       103 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~  180 (484)
T 3nyv_A          103 LVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE  180 (484)
T ss_dssp             EEECCCCSCBHHHHHHTC--SCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBC
T ss_pred             EEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcc
Confidence            999999999999877654  579999999999999999999999999999999999999   467899999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                             .
T Consensus       181 ~~-----------------------------------------------------------------------------~  183 (484)
T 3nyv_A          181 AS-----------------------------------------------------------------------------K  183 (484)
T ss_dssp             CC-----------------------------------------------------------------------------C
T ss_pred             cc-----------------------------------------------------------------------------c
Confidence            00                                                                             0


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC--CCCCCChhHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP--DSPATSYASRDLI  642 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p--~~~~~s~~~~dLI  642 (730)
                      .....+||+.|+|||++.+ .|+.++|||||||++|+|++|++||.+.+....+..+..+.+.++  .+..++.++++||
T Consensus       184 ~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  262 (484)
T 3nyv_A          184 KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLI  262 (484)
T ss_dssp             SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHH
T ss_pred             ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHH
Confidence            1123579999999999987 699999999999999999999999998877766666666555443  3456899999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      ++||.+||.+||+    +.++|+||||+...+
T Consensus       263 ~~~L~~dp~~R~s----~~e~l~h~~~~~~~~  290 (484)
T 3nyv_A          263 RKMLTYVPSMRIS----ARDALDHEWIQTYTK  290 (484)
T ss_dssp             HHHTCSSGGGSCC----HHHHHTSHHHHHHTC
T ss_pred             HHHCCCChhHCcC----HHHHhhChhhccccc
Confidence            9999999999999    799999999987554

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=4e-47  Score=397.27  Aligned_cols=267  Identities=30%  Similarity=0.423  Sum_probs=223.1

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhh------hhhHHHHHHHHHHHHHHHhcC-CCCCcccccccc
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS------LASRKKLTRAQTEREILQLLD-HPFLPTLYTHFE  401 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~------~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~  401 (730)
                      ..++|++++.||+|+||.||+|+++.+++.||||+++...      .......+.+.+|+++|+.+. ||||+++++++.
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE   94 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence            3578999999999999999999999999999999997543      112334567889999999995 999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      ++..+|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++.
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  172 (298)
T 1phk_A           95 TNTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSC  172 (298)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             cCCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccchh
Confidence            999999999999999999988764  579999999999999999999999999999999999999999999999999985


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      .....                                                                           
T Consensus       173 ~~~~~---------------------------------------------------------------------------  177 (298)
T 1phk_A          173 QLDPG---------------------------------------------------------------------------  177 (298)
T ss_dssp             ECCTT---------------------------------------------------------------------------
T ss_pred             hcCCC---------------------------------------------------------------------------
Confidence            42100                                                                           


Q ss_pred             ccccccccccCcccCChhhhc------cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCC
Q 004790          562 TAARSMSFVGTHEYLAPEIIK------GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPA  633 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~------g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~  633 (730)
                        ......+||+.|+|||++.      ...++.++|||||||++|+|++|+.||.+......+..+......++.  ...
T Consensus       178 --~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (298)
T 1phk_A          178 --EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDD  255 (298)
T ss_dssp             --CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGG
T ss_pred             --cccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCcccCcccccc
Confidence              0011347899999999996      456789999999999999999999999887655555555554444433  246


Q ss_pred             CChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchhc
Q 004790          634 TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       634 ~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~r  678 (730)
                      ++.++++||.+||..||.+||+    +.++++||||++..|..++
T Consensus       256 ~~~~l~~li~~~l~~dp~~Rps----~~~ll~h~~~~~~~~~~~~  296 (298)
T 1phk_A          256 YSDTVKDLVSRFLVVQPQKRYT----AEEALAHPFFQQYVVEEVR  296 (298)
T ss_dssp             SCHHHHHHHHHHCCSSGGGSCC----HHHHTTSGGGCTTC-----
T ss_pred             cCHHHHHHHHHHccCCcccCCC----HHHHHhChHhhhccchhhc
Confidence            7889999999999999999999    7999999999998887665

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=9.2e-48  Score=405.98  Aligned_cols=267  Identities=29%  Similarity=0.461  Sum_probs=210.3

Q ss_pred             CCeEEE-eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeE
Q 004790          331 SHFRLL-KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       331 ~~y~il-~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~L  408 (730)
                      +.|++. +.||+|+||+||+|++..+++.||||++.+...   .....+.+|+++|..+ +||||++++++|.+++.+|+
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~l   88 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPG---HIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYL   88 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSS---CCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcc---hhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence            579986 789999999999999999999999999976532   2234678899999885 89999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc---eEEecccccccccC
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH---IMLSDFDLSLRCAV  485 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~---vKL~DFGlA~~~~~  485 (730)
                      ||||++|++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.   +||+|||++.....
T Consensus        89 v~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~  166 (316)
T 2ac3_A           89 VFEKMRGGSILSHIHKR--RHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKL  166 (316)
T ss_dssp             EEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC----
T ss_pred             EEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCcccccc
Confidence            99999999999988765  57999999999999999999999999999999999999988776   99999999854211


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      .....                                                                     ......
T Consensus       167 ~~~~~---------------------------------------------------------------------~~~~~~  177 (316)
T 2ac3_A          167 NGDCS---------------------------------------------------------------------PISTPE  177 (316)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccc---------------------------------------------------------------------cccccc
Confidence            00000                                                                     000001


Q ss_pred             ccccccCcccCChhhhcc-----CCCCCcceeechhHHHHHHhhCCCCCCCCCCcc---------------ceeeeeccc
Q 004790          566 SMSFVGTHEYLAPEIIKG-----EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA---------------TLFNVVGQQ  625 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g-----~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~---------------~l~~i~~~~  625 (730)
                      ....+||+.|+|||++.+     ..++.++|||||||++|||++|+.||.+....+               .+..+....
T Consensus       178 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  257 (316)
T 2ac3_A          178 LLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGK  257 (316)
T ss_dssp             ----CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCC
T ss_pred             cccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccC
Confidence            123579999999999986     457899999999999999999999998765432               112223333


Q ss_pred             ccCCCC--CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          626 LRFPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       626 ~~~p~~--~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      +.+|..  ..++.++++||++||..||.+||+    ++|+++||||++..|.
T Consensus       258 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps----~~e~l~hp~~~~~~~~  305 (316)
T 2ac3_A          258 YEFPDKDWAHISCAAKDLISKLLVRDAKQRLS----AAQVLQHPWVQGCAPE  305 (316)
T ss_dssp             CCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCC----HHHHHHSTTCC-----
T ss_pred             cccCchhcccCCHHHHHHHHHHhhCChhhCCC----HHHHhcChhhcCCCCc
Confidence            344421  457889999999999999999999    7999999999987654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=7.7e-48  Score=415.40  Aligned_cols=272  Identities=24%  Similarity=0.377  Sum_probs=225.3

Q ss_pred             hhhhhcCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccc
Q 004790          319 LAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYT  398 (730)
Q Consensus       319 ~~~~~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~  398 (730)
                      .......+.+..++|++++.||+|+||+||+|++..+++.||+|++....  .......+.+|+.+|+.++||||+++++
T Consensus        21 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~   98 (360)
T 3eqc_A           21 LTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYG   98 (360)
T ss_dssp             HHHHHTCCCCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC--CHHHHHHHHHHHGGGGGCCCTTBCCEEE
T ss_pred             hhhhhcccccccccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc--CHHHHHHHHHHHHHHHHCCCCCEEEEeE
Confidence            33445566788899999999999999999999999999999999997652  2344567889999999999999999999


Q ss_pred             cccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhc-ceeecccCCccEEecCCCceEEecc
Q 004790          399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML-GVVYRDLKPENVLVRDDGHIMLSDF  477 (730)
Q Consensus       399 ~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~-gIVHRDLKPeNILl~~~g~vKL~DF  477 (730)
                      +|.+++.+|+||||++|++|.+++...  ..+++..++.++.||+.||.|||+. ||+||||||+||||+.++++||+||
T Consensus        99 ~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Df  176 (360)
T 3eqc_A           99 AFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDF  176 (360)
T ss_dssp             EEEETTEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCC
T ss_pred             EEEECCEEEEEEECCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEEC
Confidence            999999999999999999999988765  5689999999999999999999986 9999999999999999999999999


Q ss_pred             cccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccc
Q 004790          478 DLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPEL  557 (730)
Q Consensus       478 GlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (730)
                      |++.....                                                                        
T Consensus       177 g~~~~~~~------------------------------------------------------------------------  184 (360)
T 3eqc_A          177 GVSGQLID------------------------------------------------------------------------  184 (360)
T ss_dssp             CCCHHHHH------------------------------------------------------------------------
T ss_pred             CCCccccc------------------------------------------------------------------------
Confidence            99843210                                                                        


Q ss_pred             ccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcccee------------------
Q 004790          558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF------------------  619 (730)
Q Consensus       558 ~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~------------------  619 (730)
                            ......+||+.|+|||++.+..++.++|||||||++|+|++|+.||...+......                  
T Consensus       185 ------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (360)
T 3eqc_A          185 ------SMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPR  258 (360)
T ss_dssp             ------HC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC---------------
T ss_pred             ------ccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcc
Confidence                  01123579999999999999999999999999999999999999998654321100                  


Q ss_pred             ------------------------eeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          620 ------------------------NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       620 ------------------------~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                                              .+............++.++++||++||..||.+||+    ++++++||||+..+|.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~~~~~~~~  334 (360)
T 3eqc_A          259 TPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERAD----LKQLMVHAFIKRSDAE  334 (360)
T ss_dssp             ---------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCC----HHHHHTSHHHHHHHHS
T ss_pred             cCCCcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCC----HHHHhhChHhhcchHh
Confidence                                    001111111112346889999999999999999999    7999999999987665


Q ss_pred             h
Q 004790          676 L  676 (730)
Q Consensus       676 ~  676 (730)
                      .
T Consensus       335 ~  335 (360)
T 3eqc_A          335 E  335 (360)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.7e-48  Score=412.48  Aligned_cols=263  Identities=27%  Similarity=0.401  Sum_probs=210.2

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +++|++++.||+|+||+||+|++..+++.||||++......  .....+.+|+++|+.++||||+++++++.+++.+|+|
T Consensus         1 l~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   78 (324)
T 3mtl_A            1 METYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEE--GAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLV   78 (324)
T ss_dssp             CCSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC--------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEE
T ss_pred             CCceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEeccccc--ccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEE
Confidence            36899999999999999999999999999999999754321  2222355799999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+. |+|..++... +..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++......   
T Consensus        79 ~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~---  153 (324)
T 3mtl_A           79 FEYLD-KDLKQYLDDC-GNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIP---  153 (324)
T ss_dssp             EECCS-EEHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC------
T ss_pred             ecccc-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccCC---
Confidence            99996 5888877654 356999999999999999999999999999999999999999999999999998432100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       154 -------------------------------------------------------------------------~~~~~~~  160 (324)
T 3mtl_A          154 -------------------------------------------------------------------------TKTYDNE  160 (324)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0011134


Q ss_pred             ccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-------------------ccCC
Q 004790          570 VGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-------------------LRFP  629 (730)
Q Consensus       570 vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-------------------~~~p  629 (730)
                      +||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+..+.+..+....                   +.++
T Consensus       161 ~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (324)
T 3mtl_A          161 VVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYP  240 (324)
T ss_dssp             --CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCC
T ss_pred             cCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccc
Confidence            78999999999987 568999999999999999999999998876544443322100                   0011


Q ss_pred             ---------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          630 ---------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       630 ---------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                               ..+.++.++++||.+||.+||.+||+    ++|+++||||.++.+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~hp~f~~~~~~~  292 (324)
T 3mtl_A          241 KYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRIS----AEDAMKHPFFLSLGERI  292 (324)
T ss_dssp             CCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCC----HHHHTTSGGGGGGCSTT
T ss_pred             cccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCC----HHHHhcChhhhhccccc
Confidence                     11356789999999999999999999    79999999999876543

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=7.6e-48  Score=418.44  Aligned_cols=262  Identities=19%  Similarity=0.209  Sum_probs=203.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc--CCCCCcccccccc-------
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL--DHPFLPTLYTHFE-------  401 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L--~HPnIV~L~~~f~-------  401 (730)
                      .+|++++.||+|+||+||+|++..+++.||||++.+...........+.+|+.+++.|  +||||++++..|.       
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~  141 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA  141 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence            4599999999999999999999999999999999987665566677788896666555  6999888664442       


Q ss_pred             cc-----------------ceeeEEeeecCCCCccccccccCCCCccHHHH------HHhHHHHHHHHHHhHhcceeecc
Q 004790          402 TD-----------------RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAA------RFYAAEVLLALEYLHMLGVVYRD  458 (730)
Q Consensus       402 ~~-----------------~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a------~~~~~qIl~AL~yLH~~gIVHRD  458 (730)
                      ..                 ..+|||||||+ |+|.+++.... ..+.+...      ..++.||+.||+|||++||||||
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrD  219 (371)
T 3q60_A          142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD-FVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGH  219 (371)
T ss_dssp             ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH-HSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETT
T ss_pred             cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc-cccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCc
Confidence            11                 45899999997 89999887642 23444444      56679999999999999999999


Q ss_pred             cCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCccccccccc
Q 004790          459 LKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKK  538 (730)
Q Consensus       459 LKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~  538 (730)
                      |||+||||+.+|++||+|||+|+....                                                     
T Consensus       220 ikp~NIll~~~~~~kL~DFG~a~~~~~-----------------------------------------------------  246 (371)
T 3q60_A          220 FTPDNLFIMPDGRLMLGDVSALWKVGT-----------------------------------------------------  246 (371)
T ss_dssp             CSGGGEEECTTSCEEECCGGGEEETTC-----------------------------------------------------
T ss_pred             CCHHHEEECCCCCEEEEecceeeecCC-----------------------------------------------------
Confidence            999999999999999999999853210                                                     


Q ss_pred             ccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhcc--CCCCCcceeechhHHHHHHhhCCCCCCCCCCc-
Q 004790          539 KTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKG--EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-  615 (730)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g--~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-  615 (730)
                                                ......||+.|+|||++.+  ..++.++|||||||+||||++|+.||.+.... 
T Consensus       247 --------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~  300 (371)
T 3q60_A          247 --------------------------RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGI  300 (371)
T ss_dssp             --------------------------EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTC
T ss_pred             --------------------------CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCccc
Confidence                                      0012367799999999988  67999999999999999999999999876332 


Q ss_pred             -cceee-----eecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchh
Q 004790          616 -ATLFN-----VVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       616 -~~l~~-----i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~  677 (730)
                       ..+..     .....+.++....++.++++||.+||..||++||+    +.++++||||++++|...
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~e~l~hp~f~~~~~~~~  364 (371)
T 3q60_A          301 KGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLL----PLEAMETPEFLQLQNEIS  364 (371)
T ss_dssp             TTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCC----HHHHTTSHHHHHHHHHHH
T ss_pred             ccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCC----HHHHhcCHHHHHHHHHHh
Confidence             11111     12234455555688999999999999999999999    799999999999988653

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=2.4e-47  Score=408.13  Aligned_cols=268  Identities=21%  Similarity=0.352  Sum_probs=226.2

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHH--------------HHHHHHHHHHHHHhcCCC
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRK--------------KLTRAQTEREILQLLDHP  391 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~--------------~~~~~~~E~~IL~~L~HP  391 (730)
                      +.+..++|++++.||+|+||.||+|++  +++.||||++.........              ....+.+|+.+|+.++||
T Consensus        26 ~~~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~  103 (348)
T 2pml_X           26 KDKYINDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNE  103 (348)
T ss_dssp             SCEEETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCT
T ss_pred             cccccCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCC
Confidence            345578999999999999999999999  8899999999865433211              115688999999999999


Q ss_pred             CCccccccccccceeeEEeeecCCCCcccc------ccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccE
Q 004790          392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTL------RQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENV  464 (730)
Q Consensus       392 nIV~L~~~f~~~~~l~LVmEy~~GGsL~~l------l~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNI  464 (730)
                      ||+++++++.+.+.+|+||||++|++|.++      +.......+++..++.++.||+.||.|||+ +||+||||||+||
T Consensus       104 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Ni  183 (348)
T 2pml_X          104 YCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNI  183 (348)
T ss_dssp             TBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGE
T ss_pred             CcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhE
Confidence            999999999999999999999999999998      655445789999999999999999999999 9999999999999


Q ss_pred             EecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          465 LVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       465 Ll~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                      |++.++++||+|||++......                                                          
T Consensus       184 l~~~~~~~kl~dfg~~~~~~~~----------------------------------------------------------  205 (348)
T 2pml_X          184 LMDKNGRVKLSDFGESEYMVDK----------------------------------------------------------  205 (348)
T ss_dssp             EECTTSCEEECCCTTCEECBTT----------------------------------------------------------
T ss_pred             EEcCCCcEEEeccccccccccc----------------------------------------------------------
Confidence            9999999999999998532100                                                          


Q ss_pred             ccCCCCCCCCcccccccccccccccccCcccCChhhhccC-CCCC-cceeechhHHHHHHhhCCCCCCCCCC-ccceeee
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGE-GHGS-AVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNV  621 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~-~~~~-~sDIWSLG~iLyELltG~~PF~g~~~-~~~l~~i  621 (730)
                                          ......||+.|+|||++.+. .++. ++|||||||++|||++|+.||.+... ...+..+
T Consensus       206 --------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i  265 (348)
T 2pml_X          206 --------------------KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNI  265 (348)
T ss_dssp             --------------------EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHH
T ss_pred             --------------------cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHH
Confidence                                01134789999999999988 5666 99999999999999999999988766 3444444


Q ss_pred             ecccccCCCC-----------------CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchh
Q 004790          622 VGQQLRFPDS-----------------PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       622 ~~~~~~~p~~-----------------~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~  677 (730)
                      ......+|..                 ..++.++++||.+||..||.+||+    ++++++||||++.+|..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps----~~e~l~hp~f~~~~~~~~  334 (348)
T 2pml_X          266 RTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERIT----SEDALKHEWLADTNIEDL  334 (348)
T ss_dssp             TSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCC----HHHHHTSGGGTTCCHHHH
T ss_pred             hccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCC----HHHHhcCccccCCCHHHH
Confidence            4444444432                 467899999999999999999999    799999999999998765

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=2.5e-47  Score=395.27  Aligned_cols=254  Identities=33%  Similarity=0.519  Sum_probs=219.9

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++.+.||+|+||.||+|++..++..||+|++.+.....   .+.+.+|+++|+.++||||++++++|.++..+|+||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED---VDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVM   85 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSC---HHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccch---HHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEE
Confidence            57999999999999999999999999999999998754332   356789999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe---cCCCceEEecccccccccCCC
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV---RDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl---~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      ||++|++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||+   +.++.+||+|||++...... 
T Consensus        86 e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~-  162 (277)
T 3f3z_A           86 ELCTGGELFERVVHK--RVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPG-  162 (277)
T ss_dssp             ECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTT-
T ss_pred             eccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCc-
Confidence            999999998877664  569999999999999999999999999999999999999   77899999999998542100 


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                  ....
T Consensus       163 ----------------------------------------------------------------------------~~~~  166 (277)
T 3f3z_A          163 ----------------------------------------------------------------------------KMMR  166 (277)
T ss_dssp             ----------------------------------------------------------------------------SCBC
T ss_pred             ----------------------------------------------------------------------------cchh
Confidence                                                                                        0011


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCC--CCCChhHHHHHHhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS--PATSYASRDLIRGL  645 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~--~~~s~~~~dLI~~l  645 (730)
                      ..+||+.|+|||++.+. ++.++|||||||++|+|++|+.||.+......+..+......++..  ..++.++++||.+|
T Consensus       167 ~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  245 (277)
T 3f3z_A          167 TKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRL  245 (277)
T ss_dssp             CCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHH
T ss_pred             ccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHH
Confidence            34799999999999765 8999999999999999999999999877666666665555554432  35789999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |..||.+||+    +.++++||||+.
T Consensus       246 l~~dp~~R~s----~~~~l~h~~~~~  267 (277)
T 3f3z_A          246 LTKSPKQRIT----SLQALEHEWFEK  267 (277)
T ss_dssp             TCSSTTTSCC----HHHHTTSHHHHH
T ss_pred             ccCChhhCcC----HHHHhcCHHHhc
Confidence            9999999999    799999999985

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=5.3e-48  Score=408.93  Aligned_cols=264  Identities=23%  Similarity=0.342  Sum_probs=217.7

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce---
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF---  405 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~---  405 (730)
                      ..++|++++.||+|+||.||+|++..+++.||||++.............+.+|+.+++.++||||+++++++.....   
T Consensus        10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~   89 (311)
T 3ork_A           10 LSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGP   89 (311)
T ss_dssp             ETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEE
T ss_pred             ecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCc
Confidence            35789999999999999999999999999999999987766666677789999999999999999999999976553   


Q ss_pred             -eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          406 -SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       406 -l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                       +|+||||++|++|.+++...  +.+++..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||++..+.
T Consensus        90 ~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~  167 (311)
T 3ork_A           90 LPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA  167 (311)
T ss_dssp             EEEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC----
T ss_pred             ccEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCccccc
Confidence             49999999999999988765  579999999999999999999999999999999999999999999999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ....                                                                         ...
T Consensus       168 ~~~~-------------------------------------------------------------------------~~~  174 (311)
T 3ork_A          168 DSGN-------------------------------------------------------------------------SVT  174 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc-------------------------------------------------------------------------ccc
Confidence            1000                                                                         001


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC--CCCCCChhHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP--DSPATSYASRDLI  642 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p--~~~~~s~~~~dLI  642 (730)
                      .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.........+.......+  ....++.++.+||
T Consensus       175 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  254 (311)
T 3ork_A          175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVV  254 (311)
T ss_dssp             -------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHH
T ss_pred             cccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccccCCCCHHHHHHH
Confidence            11235799999999999999999999999999999999999999988766555444443332221  1245789999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      .+||..||.+||+    +.++++|+|++.
T Consensus       255 ~~~l~~dP~~R~~----~~~~l~~~l~~~  279 (311)
T 3ork_A          255 LKALAKNPENRYQ----TAAEMRADLVRV  279 (311)
T ss_dssp             HHHTCSSGGGSCS----SHHHHHHHHHHH
T ss_pred             HHHHhcCHhhChh----hHHHHHHHHHHH
Confidence            9999999999999    578899999874

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=1.1e-47  Score=432.86  Aligned_cols=258  Identities=32%  Similarity=0.495  Sum_probs=221.6

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||+||+|+++.+++.||||++.+..... .....+.+|+++|+.++||||+++++++.+...+|+||
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  100 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN-KDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBC-SCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccc-hHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence            67999999999999999999999999999999997654322 23456889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec---CCCceEEecccccccccCCC
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR---DDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~---~~g~vKL~DFGlA~~~~~~~  487 (730)
                      |||.||+|.+++...  +.+++..++.++.||+.||.|||++||+||||||+||||+   .++.+||+|||++...... 
T Consensus       101 e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~-  177 (486)
T 3mwu_A          101 ELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN-  177 (486)
T ss_dssp             CCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-
T ss_pred             EcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCC-
Confidence            999999998877655  5799999999999999999999999999999999999995   4568999999998432100 


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                  ....
T Consensus       178 ----------------------------------------------------------------------------~~~~  181 (486)
T 3mwu_A          178 ----------------------------------------------------------------------------TKMK  181 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------------------------------------------------CccC
Confidence                                                                                        0112


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccC--CCCCCCChhHHHHHHhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF--PDSPATSYASRDLIRGL  645 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~--p~~~~~s~~~~dLI~~l  645 (730)
                      ..+||+.|+|||++.+. |+.++|||||||++|+|++|+.||.+.+..+.+..+..+.+.+  +.+..++.++++||++|
T Consensus       182 ~~~gt~~y~aPE~~~~~-~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  260 (486)
T 3mwu_A          182 DRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKM  260 (486)
T ss_dssp             CCTTGGGGCCGGGGGSC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHH
T ss_pred             CCcCCCCCCCHHHhCCC-CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHH
Confidence            34799999999999874 9999999999999999999999999887766666666555444  33456799999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      |..||.+||+    +.++|+||||+...
T Consensus       261 L~~dp~~R~t----~~~~l~hp~~~~~~  284 (486)
T 3mwu_A          261 LTFHPSLRIT----ATQCLEHPWIQKYS  284 (486)
T ss_dssp             TCSSTTTSCC----HHHHHHCHHHHHTC
T ss_pred             cCCChhhCcC----HHHHhcCHhhccCc
Confidence            9999999999    79999999998653

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=7e-47  Score=411.61  Aligned_cols=271  Identities=25%  Similarity=0.405  Sum_probs=210.9

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc----
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR----  404 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~----  404 (730)
                      ..++|++++.||+|+||.||+|++..+++.||||++.+.. ........+.+|+.+|+.++||||++++++|....    
T Consensus        23 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~  101 (371)
T 2xrw_A           23 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF-QNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEE  101 (371)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTT-SSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTT
T ss_pred             hhhheeEeeeeEecCCEEEEEEEECCCCceEEEEEecccc-CChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccc
Confidence            3579999999999999999999999999999999997643 23355567889999999999999999999997654    


Q ss_pred             --eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          405 --FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       405 --~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                        .+|+||||+. ++|..++..    .+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++.
T Consensus       102 ~~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~  176 (371)
T 2xrw_A          102 FQDVYIVMELMD-ANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  176 (371)
T ss_dssp             CCEEEEEEECCS-EEHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred             ccceEEEEEcCC-CCHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeecccc
Confidence              7899999996 577776653    489999999999999999999999999999999999999999999999999843


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ...                                                                             
T Consensus       177 ~~~-----------------------------------------------------------------------------  179 (371)
T 2xrw_A          177 AGT-----------------------------------------------------------------------------  179 (371)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            210                                                                             


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc----------------
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL----------------  626 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~----------------  626 (730)
                      .......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+..++....                
T Consensus       180 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  259 (371)
T 2xrw_A          180 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRT  259 (371)
T ss_dssp             ----------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHH
T ss_pred             ccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHH
Confidence            0011235799999999999999999999999999999999999999998765444433322100                


Q ss_pred             ------c--------------CCCCC----CCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchhccCCC
Q 004790          627 ------R--------------FPDSP----ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTP  682 (730)
Q Consensus       627 ------~--------------~p~~~----~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~r~~~p  682 (730)
                            .              +|...    ..+.++++||++||..||.+|||    ++|+++||||+...........+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t----~~e~l~hp~~~~~~~~~~~~~~~  335 (371)
T 2xrw_A          260 YVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRIS----VDEALQHPYINVWYDPSEAEAPP  335 (371)
T ss_dssp             HHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCC----HHHHHHSHHHHTTCCHHHHTCCC
T ss_pred             HHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCC----HHHHhCCcchhhhcCccccCCCC
Confidence                  0              00000    01467899999999999999999    79999999998644333333334


Q ss_pred             CCCC
Q 004790          683 PEVP  686 (730)
Q Consensus       683 p~~p  686 (730)
                      |.+|
T Consensus       336 ~~~~  339 (371)
T 2xrw_A          336 PKIP  339 (371)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            4433

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4e-47  Score=408.95  Aligned_cols=265  Identities=27%  Similarity=0.372  Sum_probs=210.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhh--HHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS--RKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~--~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      .++|++++.||+|+||.||+|++..+++.||||++.......  ......+.+|+++|+.++||||++++++|.+...+|
T Consensus         9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   88 (346)
T 1ua2_A            9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS   88 (346)
T ss_dssp             ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred             hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceE
Confidence            478999999999999999999999999999999997643222  112346789999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+.+ +|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+++..... 
T Consensus        89 lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~-  165 (346)
T 1ua2_A           89 LVFDFMET-DLEVIIKDN-SLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSP-  165 (346)
T ss_dssp             EEEECCSE-EHHHHHTTC-CSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSC-
T ss_pred             EEEEcCCC-CHHHHHHhc-CcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccceeccCC-
Confidence            99999965 787776553 356899999999999999999999999999999999999999999999999998532100 


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       166 ---------------------------------------------------------------------------~~~~~  170 (346)
T 1ua2_A          166 ---------------------------------------------------------------------------NRAYT  170 (346)
T ss_dssp             ---------------------------------------------------------------------------CCCCC
T ss_pred             ---------------------------------------------------------------------------cccCC
Confidence                                                                                       00112


Q ss_pred             ccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-----cCCC-----------
Q 004790          568 SFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-----RFPD-----------  630 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-----~~p~-----------  630 (730)
                      ..+||+.|+|||++.+. .++.++|||||||++|||++|.+||.+.+..+.+.++.....     .++.           
T Consensus       171 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  250 (346)
T 1ua2_A          171 HQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFK  250 (346)
T ss_dssp             CSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCC
T ss_pred             cccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCccccccc
Confidence            34789999999999765 489999999999999999999999998765555444432110     0000           


Q ss_pred             ----------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          631 ----------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       631 ----------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                                ....+.++++||++||..||.+||+    ++|+++||||....|..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~h~~f~~~~~~~  302 (346)
T 1ua2_A          251 SFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARIT----ATQALKMKYFSNRPGPT  302 (346)
T ss_dssp             CCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCC----HHHHHTSGGGTSSSCCC
T ss_pred             ccCCCChHHhhccCCHHHHHHHHHHhccChhhCCC----HHHHhcChhhhcCCCCC
Confidence                      1345789999999999999999999    79999999999866543

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=4e-47  Score=421.31  Aligned_cols=263  Identities=30%  Similarity=0.482  Sum_probs=210.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh-----hHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA-----SRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~-----~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      .++|++++.||+|+||+||+|.++.+++.||||++.+....     .......+.+|+.+|+.++||||++++++|..+ 
T Consensus       134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~-  212 (419)
T 3i6u_A          134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE-  212 (419)
T ss_dssp             HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESS-
T ss_pred             hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecC-
Confidence            47899999999999999999999999999999999875432     122233578999999999999999999998654 


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC---ceEEecccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG---HIMLSDFDLSL  481 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g---~vKL~DFGlA~  481 (730)
                      .+|||||||+||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++   .+||+|||+++
T Consensus       213 ~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~  290 (419)
T 3i6u_A          213 DYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK  290 (419)
T ss_dssp             EEEEEEECCTTCBGGGGTSSS--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTT
T ss_pred             ceEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeecccce
Confidence            478999999999999887654  5799999999999999999999999999999999999997544   59999999984


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      ....                                                                            
T Consensus       291 ~~~~----------------------------------------------------------------------------  294 (419)
T 3i6u_A          291 ILGE----------------------------------------------------------------------------  294 (419)
T ss_dssp             SCC-----------------------------------------------------------------------------
T ss_pred             ecCC----------------------------------------------------------------------------
Confidence            3210                                                                            


Q ss_pred             ccccccccccCcccCChhhhcc---CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeee-ecccccCC--CCCCCC
Q 004790          562 TAARSMSFVGTHEYLAPEIIKG---EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV-VGQQLRFP--DSPATS  635 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g---~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i-~~~~~~~p--~~~~~s  635 (730)
                       .......+||+.|+|||++.+   ..|+.++|||||||++|+|++|+.||.+......+... ......++  .+..++
T Consensus       295 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  373 (419)
T 3i6u_A          295 -TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVS  373 (419)
T ss_dssp             -----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCCCCHHHHTTSC
T ss_pred             -CccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCCCCchhhcccC
Confidence             001124589999999999864   56788999999999999999999999876554443332 22332222  124578


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                      .++++||.+||..||.+||+    ++++++||||++.+|..
T Consensus       374 ~~~~~li~~~L~~dP~~Rps----~~e~l~hp~~~~~~~~~  410 (419)
T 3i6u_A          374 EKALDLVKKLLVVDPKARFT----TEEALRHPWLQDEDMKR  410 (419)
T ss_dssp             HHHHHHHHHHSCSSTTTSCC----HHHHHHSGGGCCHHHHH
T ss_pred             HHHHHHHHHHccCChhHCcC----HHHHhCCcccCChhHHH
Confidence            99999999999999999999    79999999999887753

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=1e-47  Score=406.03  Aligned_cols=269  Identities=23%  Similarity=0.377  Sum_probs=206.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc-----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR-----  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~-----  404 (730)
                      .++|++++.||+|+||.||+|+++.+++.||||+++....  ....+.+.+|+++|+.++||||++++++|.+..     
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~   82 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR--ELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQ   82 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCST--TTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCc--hhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhh
Confidence            3679999999999999999999999999999999975432  234466889999999999999999999885432     


Q ss_pred             ----------------------------------------------------eeeEEeeecCCCCccccccccCC-CCcc
Q 004790          405 ----------------------------------------------------FSCLVMEYCPGGDLHTLRQRQPG-KHFS  431 (730)
Q Consensus       405 ----------------------------------------------------~l~LVmEy~~GGsL~~ll~~~~~-~~ls  431 (730)
                                                                          .+|+|||||+|++|.+++.+... ...+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~  162 (332)
T 3qd2_B           83 EEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDRE  162 (332)
T ss_dssp             HHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSC
T ss_pred             hhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchh
Confidence                                                                38999999999999998876522 2345


Q ss_pred             HHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccC
Q 004790          432 EYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQ  511 (730)
Q Consensus       432 e~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (730)
                      +..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||+++...........                   
T Consensus       163 ~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~-------------------  223 (332)
T 3qd2_B          163 HGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTV-------------------  223 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC-------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccc-------------------
Confidence            5568899999999999999999999999999999999999999999999653211000000                   


Q ss_pred             CCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcce
Q 004790          512 PACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVD  591 (730)
Q Consensus       512 ~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sD  591 (730)
                                          +                         ............+||+.|+|||++.+..++.++|
T Consensus       224 --------------------~-------------------------~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  258 (332)
T 3qd2_B          224 --------------------L-------------------------TPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVD  258 (332)
T ss_dssp             -----------------------------------------------------CCCSCC-CGGGSCHHHHHCCCCCTHHH
T ss_pred             --------------------c-------------------------ccccccccccccCCCcCccChHHhcCCCCcchhh
Confidence                                0                         0000001123458999999999999999999999


Q ss_pred             eechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC-CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          592 WWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD-SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       592 IWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~-~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      ||||||++|||++|..|+....  ..+..+...  .++. ....+.++++||.+||..||.+||+    ++|+++||||+
T Consensus       259 i~slG~il~el~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rps----~~~~l~~~~f~  330 (332)
T 3qd2_B          259 IFSLGLILFELLYSFSTQMERV--RIITDVRNL--KFPLLFTQKYPQEHMMVQDMLSPSPTERPE----ATDIIENAIFE  330 (332)
T ss_dssp             HHHHHHHHHHHHSCCCCHHHHH--HHHHHHHTT--CCCHHHHHHCHHHHHHHHHHHCSSGGGSCC----HHHHHHSTTCC
T ss_pred             HHHHHHHHHHHHHcCCChhHHH--HHHHHhhcc--CCCcccccCChhHHHHHHHHccCCCCcCCC----HHHHhhchhhh
Confidence            9999999999999987764211  111111111  1111 1234677899999999999999999    79999999998


Q ss_pred             CC
Q 004790          671 GV  672 (730)
Q Consensus       671 ~v  672 (730)
                      ++
T Consensus       331 ~~  332 (332)
T 3qd2_B          331 NL  332 (332)
T ss_dssp             CC
T ss_pred             cC
Confidence            74

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=5.2e-47  Score=420.51  Aligned_cols=258  Identities=26%  Similarity=0.461  Sum_probs=208.9

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc------cc
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET------DR  404 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~------~~  404 (730)
                      .+|++++.||+|+||+||+|++..+++.||||++.+...       ...+|+++|+.++||||++++++|..      ..
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~-------~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~  126 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV  126 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT-------SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch-------hHHHHHHHHHHcCCCCccceeeEEeccCCCCcce
Confidence            479999999999999999999999999999999865421       13479999999999999999998843      34


Q ss_pred             eeeEEeeecCCCCccccccc--cCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC-CceEEecccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQR--QPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD-GHIMLSDFDLSL  481 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~--~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~-g~vKL~DFGlA~  481 (730)
                      ++||||||+++ +|..++..  .....+++..++.|+.||+.||.|||++||+||||||+||||+.+ +.+||+|||+++
T Consensus       127 ~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~  205 (420)
T 1j1b_A          127 YLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK  205 (420)
T ss_dssp             EEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             eEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhh
Confidence            57899999965 56554432  223579999999999999999999999999999999999999965 678999999985


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      .+...                                                                           
T Consensus       206 ~~~~~---------------------------------------------------------------------------  210 (420)
T 1j1b_A          206 QLVRG---------------------------------------------------------------------------  210 (420)
T ss_dssp             ECCTT---------------------------------------------------------------------------
T ss_pred             hcccC---------------------------------------------------------------------------
Confidence            42100                                                                           


Q ss_pred             ccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-----------------
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-----------------  623 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-----------------  623 (730)
                        .....++||+.|+|||++.+. .|+.++|||||||+||||++|+.||.+.+..+.+.+++.                 
T Consensus       211 --~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~  288 (420)
T 1j1b_A          211 --EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNY  288 (420)
T ss_dssp             --CCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCC
T ss_pred             --CCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhh
Confidence              011235799999999999875 689999999999999999999999998766555544432                 


Q ss_pred             ccccCCC----------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchh
Q 004790          624 QQLRFPD----------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       624 ~~~~~p~----------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~  677 (730)
                      ..+.+|.          ....+.++++||.+||.+||.+||+    +.|+++||||+++.+...
T Consensus       289 ~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t----~~e~l~hp~f~~~~~~~~  348 (420)
T 1j1b_A          289 TEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLT----PLEACAHSFFDELRDPNV  348 (420)
T ss_dssp             CCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGGGGGCTTC
T ss_pred             hhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCC----HHHHhCCHhhcccccccc
Confidence            1112221          1346789999999999999999999    799999999998776543

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-47  Score=403.21  Aligned_cols=256  Identities=24%  Similarity=0.333  Sum_probs=205.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHH-HhcCCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL-~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      +..++|+++++||+|+||+||+|++..+++.||||++........... ....|+..+ +.++||||++++++|.+++.+
T Consensus        54 ~~~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~-~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~  132 (311)
T 3p1a_A           54 FFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRA-RKLAEVGSHEKVGQHPCCVRLEQAWEEGGIL  132 (311)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHH-HHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             hhhhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHH-HHHHHHHHHHHhcCCCcEEEEEEEEEeCCEE
Confidence            334679999999999999999999999999999999865443333333 344455444 455999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      ||||||+ +++|..++... +..+++..++.++.||+.||+|||++||+||||||+||||+.++++||+|||++......
T Consensus       133 ~lv~e~~-~~~L~~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~  210 (311)
T 3p1a_A          133 YLQTELC-GPSLQQHCEAW-GASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA  210 (311)
T ss_dssp             EEEEECC-CCBHHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC--
T ss_pred             EEEEecc-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeecccC
Confidence            9999999 77888877654 356999999999999999999999999999999999999999999999999998542100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       211 -----------------------------------------------------------------------------~~~  213 (311)
T 3p1a_A          211 -----------------------------------------------------------------------------GAG  213 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------------------------------------------------------------CCC
Confidence                                                                                         001


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...+||+.|+|||++.+ .++.++|||||||++|||++|..||.+......+   ............++.++++||.+||
T Consensus       214 ~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~li~~~L  289 (311)
T 3p1a_A          214 EVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQL---RQGYLPPEFTAGLSSELRSVLVMML  289 (311)
T ss_dssp             -CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHHH---TTTCCCHHHHTTSCHHHHHHHHHHS
T ss_pred             cccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHH---hccCCCcccccCCCHHHHHHHHHHc
Confidence            12469999999999987 6999999999999999999998777654322221   1121111122457899999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          647 VKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      .+||++||+    ++++++||||+.
T Consensus       290 ~~dP~~Rpt----~~ell~hp~~~~  310 (311)
T 3p1a_A          290 EPDPKLRAT----AEALLALPVLRQ  310 (311)
T ss_dssp             CSSTTTSCC----HHHHHTSGGGSC
T ss_pred             CCChhhCcC----HHHHHhCccccC
Confidence            999999999    799999999974

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=5.1e-47  Score=396.77  Aligned_cols=260  Identities=27%  Similarity=0.464  Sum_probs=225.8

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ..++|++++.||+|+||.||+|++..+++.||+|++.+.........+.+.+|+.+++.++||||+++++++.+++.+|+
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l   92 (294)
T 2rku_A           13 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV   92 (294)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             cccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEE
Confidence            34689999999999999999999999999999999987765555667788999999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||++|++|.+++...  ..+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......  
T Consensus        93 v~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~--  168 (294)
T 2rku_A           93 VLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD--  168 (294)
T ss_dssp             EEECCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCST--
T ss_pred             EEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceecccC--
Confidence            99999999999987764  57999999999999999999999999999999999999999999999999998542100  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                ......
T Consensus       169 --------------------------------------------------------------------------~~~~~~  174 (294)
T 2rku_A          169 --------------------------------------------------------------------------GERKKV  174 (294)
T ss_dssp             --------------------------------------------------------------------------TCCBCC
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      001123


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+......+..+......+|  ..++..+.+||.+||..
T Consensus       175 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~  252 (294)
T 2rku_A          175 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIP--KHINPVAASLIQKMLQT  252 (294)
T ss_dssp             CCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCC--TTSCHHHHHHHHHHTCS
T ss_pred             ccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhccCCCc--cccCHHHHHHHHHHccc
Confidence            4799999999999999999999999999999999999999988765555555544444444  46789999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ||++||+    ++++++||||...
T Consensus       253 ~p~~Rps----~~~ll~~~~~~~~  272 (294)
T 2rku_A          253 DPTARPT----INELLNDEFFTSG  272 (294)
T ss_dssp             SGGGSCC----GGGGGGSHHHHTS
T ss_pred             ChhhCcC----HHHHhhChheecC
Confidence            9999999    6899999999853

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=1.8e-47  Score=432.12  Aligned_cols=260  Identities=32%  Similarity=0.504  Sum_probs=217.7

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|+++.++..||||++.+..... .....+.+|+.+|+.++||||++++++|++...+|+|
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  114 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVST-SSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV  114 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCc-hHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            357999999999999999999999999999999998754322 2245678999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---CCceEEecccccccccCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---DGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~g~vKL~DFGlA~~~~~~  486 (730)
                      ||||.||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+||||+.   ++.+||+|||++......
T Consensus       115 ~e~~~~g~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~  192 (494)
T 3lij_A          115 MECYKGGELFDEIIHR--MKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ  192 (494)
T ss_dssp             EECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTT
T ss_pred             EecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCC
Confidence            9999999998877654  57999999999999999999999999999999999999976   456999999998542100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       193 -----------------------------------------------------------------------------~~~  195 (494)
T 3lij_A          193 -----------------------------------------------------------------------------KKM  195 (494)
T ss_dssp             -----------------------------------------------------------------------------BCB
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         011


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC--CCCCCChhHHHHHHh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP--DSPATSYASRDLIRG  644 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p--~~~~~s~~~~dLI~~  644 (730)
                      ...+||+.|+|||++.+ .|+.++|||||||++|+|++|+.||.+......+..+....+.++  .+..++.++++||++
T Consensus       196 ~~~~gt~~y~aPE~l~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  274 (494)
T 3lij_A          196 KERLGTAYYIAPEVLRK-KYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQ  274 (494)
T ss_dssp             CCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHH
T ss_pred             cccCCCcCeeCHHHHcc-cCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHH
Confidence            23579999999999874 699999999999999999999999998877666666666655544  335789999999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      ||..||.+||+    +.++|+||||+...+
T Consensus       275 ~L~~dp~~R~s----~~e~l~hp~~~~~~~  300 (494)
T 3lij_A          275 MLQFDSQRRIS----AQQALEHPWIKEMCS  300 (494)
T ss_dssp             HTCSSTTTSCC----HHHHHTCHHHHHHHH
T ss_pred             HCCCChhhCcc----HHHHhcCcccccCcc
Confidence            99999999999    799999999987543

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=4.1e-47  Score=407.13  Aligned_cols=260  Identities=27%  Similarity=0.464  Sum_probs=226.6

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ...+|++++.||+|+||.||++++..+++.||+|++.+.........+.+.+|+.+++.++||||++++++|.+++.+|+
T Consensus        39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  118 (335)
T 2owb_A           39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV  118 (335)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence            34789999999999999999999999999999999987765555667788999999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||+.|++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......  
T Consensus       119 v~e~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~--  194 (335)
T 2owb_A          119 VLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD--  194 (335)
T ss_dssp             EECCCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCST--
T ss_pred             EEecCCCCCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecccC--
Confidence            99999999999987764  57999999999999999999999999999999999999999999999999998542100  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                ......
T Consensus       195 --------------------------------------------------------------------------~~~~~~  200 (335)
T 2owb_A          195 --------------------------------------------------------------------------GERKKV  200 (335)
T ss_dssp             --------------------------------------------------------------------------TCCBCC
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      001123


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+......+..+......++  ..++.++++||++||..
T Consensus       201 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~  278 (335)
T 2owb_A          201 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIP--KHINPVAASLIQKMLQT  278 (335)
T ss_dssp             CCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCC--TTSCHHHHHHHHHHTCS
T ss_pred             cCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcCCCCCC--ccCCHHHHHHHHHHccC
Confidence            4799999999999999999999999999999999999999988765555555555544444  35789999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ||++||+    ++++++||||...
T Consensus       279 dp~~Rps----~~ell~~~~~~~~  298 (335)
T 2owb_A          279 DPTARPT----INELLNDEFFTSG  298 (335)
T ss_dssp             SGGGSCC----GGGGGGSHHHHTS
T ss_pred             ChhHCcC----HHHHhcCccccCC
Confidence            9999999    6899999999863

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=3.1e-47  Score=393.79  Aligned_cols=261  Identities=30%  Similarity=0.463  Sum_probs=216.1

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      +.+..++|++++.||+|+||.||+|++..+++.||||++.............+.+|+.+++.++||||+++++++.+...
T Consensus         6 g~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   85 (276)
T 2h6d_A            6 GRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTD   85 (276)
T ss_dssp             -CCEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred             CcceeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCe
Confidence            44667899999999999999999999999999999999987654444455678899999999999999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....
T Consensus        86 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~  163 (276)
T 2h6d_A           86 FFMVMEYVSGGELFDYICKH--GRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD  163 (276)
T ss_dssp             EEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC
T ss_pred             EEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccCC
Confidence            99999999999999988765  4689999999999999999999999999999999999999999999999999843210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      .                                                                             ..
T Consensus       164 ~-----------------------------------------------------------------------------~~  166 (276)
T 2h6d_A          164 G-----------------------------------------------------------------------------EF  166 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             C-----------------------------------------------------------------------------cc
Confidence            0                                                                             00


Q ss_pred             ccccccCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~  644 (730)
                      ....+||+.|+|||++.+..+ +.++|||||||++|+|++|+.||.+......+..+......+|  ..++.++.+||.+
T Consensus       167 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~li~~  244 (276)
T 2h6d_A          167 LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIP--EYLNRSVATLLMH  244 (276)
T ss_dssp             ----------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCC--TTSCHHHHHHHHH
T ss_pred             eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcccCc--hhcCHHHHHHHHH
Confidence            113478999999999998876 6899999999999999999999987654444444433333333  4578899999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||..||.+||+    +.++++||||+.
T Consensus       245 ~l~~~p~~Rps----~~~~l~h~~~~~  267 (276)
T 2h6d_A          245 MLQVDPLKRAT----IKDIREHEWFKQ  267 (276)
T ss_dssp             HTCSSGGGSCC----HHHHHHSHHHHT
T ss_pred             HccCChhhCCC----HHHHHhChhhcc
Confidence            99999999999    799999999975

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=1.5e-47  Score=397.55  Aligned_cols=264  Identities=29%  Similarity=0.476  Sum_probs=222.1

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH---HHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR---KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~---~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ++|++++.||+|+||.||+|++..+++.||+|++.+......   ...+.+.+|+.+|+.++||||+++++++.+...+|
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            579999999999999999999999999999999976543221   12456789999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC----ceEEecccccccc
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG----HIMLSDFDLSLRC  483 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g----~vKL~DFGlA~~~  483 (730)
                      +||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++    .+||+|||++...
T Consensus        85 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~  162 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEK--ESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKI  162 (283)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEEC
T ss_pred             EEEeecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceec
Confidence            999999999999988764  5799999999999999999999999999999999999998877    8999999998532


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ...                                                                             
T Consensus       163 ~~~-----------------------------------------------------------------------------  165 (283)
T 3bhy_A          163 EAG-----------------------------------------------------------------------------  165 (283)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRDL  641 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~dL  641 (730)
                      .......||+.|+|||++.+..++.++|||||||++|+|++|+.||.+......+..+......++.  ....+..+++|
T Consensus       166 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  245 (283)
T 3bhy_A          166 NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDF  245 (283)
T ss_dssp             ------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHH
T ss_pred             CcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCCcchhcccCCHHHHHH
Confidence            0011346899999999999999999999999999999999999999887655555444443333321  24578899999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchh
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~  677 (730)
                      |.+||..||.+||+    +.++++||||+.++|...
T Consensus       246 i~~~l~~dp~~Rps----~~~~l~h~~~~~~~~~~~  277 (283)
T 3bhy_A          246 IRRLLVKDPKRRMT----IAQSLEHSWIKAIRRRNV  277 (283)
T ss_dssp             HHTTSCSSGGGSCC----HHHHHHCHHHHHHHHCCC
T ss_pred             HHHHccCCHhHCcC----HHHHHhCHHHHHHHHHhh
Confidence            99999999999999    799999999998776543

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=3.8e-47  Score=430.52  Aligned_cols=259  Identities=28%  Similarity=0.440  Sum_probs=219.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH----------HHHHHHHHHHHHHHhcCCCCCcccccc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR----------KKLTRAQTEREILQLLDHPFLPTLYTH  399 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~----------~~~~~~~~E~~IL~~L~HPnIV~L~~~  399 (730)
                      .++|+++++||+|+||+||+|+++.+++.||||++.+......          ...+.+.+|+.+|+.++||||++++++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            4789999999999999999999999999999999987543321          234568899999999999999999999


Q ss_pred             ccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC---ceEEec
Q 004790          400 FETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG---HIMLSD  476 (730)
Q Consensus       400 f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g---~vKL~D  476 (730)
                      |+++..+|||||||+||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++   .+||+|
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~D  192 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQIINR--HKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVD  192 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECC
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEE
Confidence            99999999999999999998877654  5799999999999999999999999999999999999998776   699999


Q ss_pred             ccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcc
Q 004790          477 FDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPE  556 (730)
Q Consensus       477 FGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (730)
                      ||++......                                                                      
T Consensus       193 fg~a~~~~~~----------------------------------------------------------------------  202 (504)
T 3q5i_A          193 FGLSSFFSKD----------------------------------------------------------------------  202 (504)
T ss_dssp             CTTCEECCTT----------------------------------------------------------------------
T ss_pred             CCCCEEcCCC----------------------------------------------------------------------
Confidence            9998542100                                                                      


Q ss_pred             cccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC--CCCCC
Q 004790          557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP--DSPAT  634 (730)
Q Consensus       557 ~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p--~~~~~  634 (730)
                             ......+||+.|+|||++.+ .|+.++|||||||++|+|++|+.||.+.+....+..+..+.+.++  .+..+
T Consensus       203 -------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  274 (504)
T 3q5i_A          203 -------YKLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNI  274 (504)
T ss_dssp             -------SCBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTS
T ss_pred             -------CccccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCCC
Confidence                   01123479999999999875 589999999999999999999999998877766666666655444  23568


Q ss_pred             ChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          635 SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       635 s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      +.++++||++||.+||.+||+    ++|+|+||||+..
T Consensus       275 s~~~~~li~~~L~~dp~~R~t----~~e~l~h~~~~~~  308 (504)
T 3q5i_A          275 SDEAKELIKLMLTYDYNKRCT----AEEALNSRWIKKY  308 (504)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCC----HHHHHTSHHHHHT
T ss_pred             CHHHHHHHHHHcCCChhHCCC----HHHHhcCHhhhhc
Confidence            999999999999999999999    7999999999854

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=1.4e-46  Score=388.31  Aligned_cols=261  Identities=25%  Similarity=0.434  Sum_probs=218.5

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||.||+|++..+++.||+|++......  .....+.+|+.+++.++||||+++++++.+++..|+|
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV--DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   83 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCT--THHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccch--hhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEE
Confidence            36799999999999999999999999999999999765432  2345688999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.......  
T Consensus        84 ~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~--  159 (276)
T 2yex_A           84 LEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNN--  159 (276)
T ss_dssp             EECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETT--
T ss_pred             EEecCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCc--
Confidence            9999999999988754  579999999999999999999999999999999999999999999999999985321000  


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              ........
T Consensus       160 ------------------------------------------------------------------------~~~~~~~~  167 (276)
T 2yex_A          160 ------------------------------------------------------------------------RERLLNKM  167 (276)
T ss_dssp             ------------------------------------------------------------------------EECCBCCC
T ss_pred             ------------------------------------------------------------------------chhcccCC
Confidence                                                                                    00011235


Q ss_pred             ccCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCcccee-eeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          570 VGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF-NVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~-~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +||+.|+|||++.+..+ +.++|||||||++|||++|+.||.+........ .+.......+....++..+++||.+||.
T Consensus       168 ~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  247 (276)
T 2yex_A          168 CGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILV  247 (276)
T ss_dssp             CSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSC
T ss_pred             ccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccCchhhcCHHHHHHHHHHCC
Confidence            79999999999998775 778999999999999999999998765443222 2222223333345678999999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      .||.+||+    ++++++||||+..
T Consensus       248 ~~p~~Rps----~~~il~~~~~~~~  268 (276)
T 2yex_A          248 ENPSARIT----IPDIKKDRWYNKP  268 (276)
T ss_dssp             SSTTTSCC----HHHHTTCTTTTCC
T ss_pred             CCchhCCC----HHHHhcCccccCh
Confidence            99999999    7999999999863

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=7.5e-47  Score=412.37  Aligned_cols=257  Identities=26%  Similarity=0.393  Sum_probs=200.7

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc------
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD------  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~------  403 (730)
                      .++|++++.||+|+||.||+|.+..+++.||||++.+.. .......++.+|+.+|+.++||||++++++|...      
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~  106 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF-QSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF  106 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccc-cCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence            478999999999999999999999999999999997543 2334556788999999999999999999998654      


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ..+|+||||+ +++|..++..   ..+++..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||+++..
T Consensus       107 ~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~  182 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT  182 (367)
T ss_dssp             CCCEEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC-------
T ss_pred             CeEEEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeeccccccc
Confidence            5689999999 8999988765   36999999999999999999999999999999999999999999999999998431


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      .                                                                               
T Consensus       183 ~-------------------------------------------------------------------------------  183 (367)
T 2fst_X          183 A-------------------------------------------------------------------------------  183 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-----------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-----------------  625 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-----------------  625 (730)
                      ......+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.+....+..++...                 
T Consensus       184 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~  263 (367)
T 2fst_X          184 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESAR  263 (367)
T ss_dssp             -------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHH
T ss_pred             ccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHH
Confidence            00123589999999999988 678999999999999999999999999876554443332100                 


Q ss_pred             ------ccCCC------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          626 ------LRFPD------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       626 ------~~~p~------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                            ...+.      ....+.++++||++||..||.+||+    ++++|+||||+.+..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t----~~e~L~hp~~~~~~~  320 (367)
T 2fst_X          264 NYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRIT----AAQALAHAYFAQYHD  320 (367)
T ss_dssp             HHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGTTTCC
T ss_pred             HHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcC----HHHHhcChhhhhccC
Confidence                  00010      1346788999999999999999999    799999999997653

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.3e-46  Score=401.74  Aligned_cols=255  Identities=27%  Similarity=0.431  Sum_probs=216.5

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      .|...+.||+|+||.||+|++..+++.||||++......   ..+.+.+|+.+|+.++||||++++++|.....+|+|||
T Consensus        46 ~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  122 (321)
T 2c30_A           46 LLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQ---RRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLME  122 (321)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC---SHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchh---HHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEe
Confidence            488889999999999999999999999999999765432   23457889999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      |++|++|.+++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......     
T Consensus       123 ~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~-----  194 (321)
T 2c30_A          123 FLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKD-----  194 (321)
T ss_dssp             CCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSS-----
T ss_pred             cCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccC-----
Confidence            9999999998765   36999999999999999999999999999999999999999999999999998542100     


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                             .......+|
T Consensus       195 -----------------------------------------------------------------------~~~~~~~~g  203 (321)
T 2c30_A          195 -----------------------------------------------------------------------VPKRKSLVG  203 (321)
T ss_dssp             -----------------------------------------------------------------------SCCBCCCCS
T ss_pred             -----------------------------------------------------------------------ccccccccC
Confidence                                                                                   001123579


Q ss_pred             CcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-cCCCCCCCChhHHHHHHhhhcCCC
Q 004790          572 THEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-RFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       572 T~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      |+.|+|||++.+..++.++|||||||++|||++|+.||.+......+..+..... .+.....++.++++||.+||..||
T Consensus       204 t~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp  283 (321)
T 2c30_A          204 TPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDP  283 (321)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSST
T ss_pred             CccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCCh
Confidence            9999999999999999999999999999999999999987655444433332221 122234568899999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ++||+    ++++++||||...
T Consensus       284 ~~Rps----~~ell~hp~~~~~  301 (321)
T 2c30_A          284 QERAT----AQELLDHPFLLQT  301 (321)
T ss_dssp             TTSCC----HHHHHTSGGGGGC
T ss_pred             hhCcC----HHHHhcChhhccC
Confidence            99999    7999999999854

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=4.6e-47  Score=417.26  Aligned_cols=262  Identities=27%  Similarity=0.459  Sum_probs=208.8

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc-----
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET-----  402 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~-----  402 (730)
                      ....+|++++.||+|+||+||+|++..++. ||+|++.+...       ...+|+++|+.++||||++++++|..     
T Consensus        37 ~~~~~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~~-------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~  108 (394)
T 4e7w_A           37 QREIAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKR-------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKK  108 (394)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCTT-------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSS
T ss_pred             cccceEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCcc-------hHHHHHHHHHhCCCCCcceEEEEEEecCCCC
Confidence            345689999999999999999999988876 77777654321       12369999999999999999999943     


Q ss_pred             -cceeeEEeeecCCCCccccccc-cCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec-CCCceEEecccc
Q 004790          403 -DRFSCLVMEYCPGGDLHTLRQR-QPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR-DDGHIMLSDFDL  479 (730)
Q Consensus       403 -~~~l~LVmEy~~GGsL~~ll~~-~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~-~~g~vKL~DFGl  479 (730)
                       ...+|+||||++++.+..+... .....+++..++.|++||+.||+|||++||+||||||+||||+ .++++||+|||+
T Consensus       109 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~  188 (394)
T 4e7w_A          109 DEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGS  188 (394)
T ss_dssp             SCEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             CceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCC
Confidence             3458999999976544433321 1235799999999999999999999999999999999999999 799999999999


Q ss_pred             cccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccc
Q 004790          480 SLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVA  559 (730)
Q Consensus       480 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (730)
                      ++.....                                                                         
T Consensus       189 a~~~~~~-------------------------------------------------------------------------  195 (394)
T 4e7w_A          189 AKILIAG-------------------------------------------------------------------------  195 (394)
T ss_dssp             CEECCTT-------------------------------------------------------------------------
T ss_pred             cccccCC-------------------------------------------------------------------------
Confidence            8542100                                                                         


Q ss_pred             ccccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc--------------
Q 004790          560 EPTAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--------------  624 (730)
Q Consensus       560 e~~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~--------------  624 (730)
                          ....+++||+.|+|||++.+. .|+.++|||||||++|||++|+.||.+.+..+.+..++..              
T Consensus       196 ----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~  271 (394)
T 4e7w_A          196 ----EPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNP  271 (394)
T ss_dssp             ----CCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCG
T ss_pred             ----CCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhCh
Confidence                011235789999999999876 4899999999999999999999999987655555443321              


Q ss_pred             ---cccCC----------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchhc
Q 004790          625 ---QLRFP----------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIR  678 (730)
Q Consensus       625 ---~~~~p----------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~r  678 (730)
                         ...++          .....+.++++||.+||++||.+||+    +.|+++||||+++.|...+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~hp~f~~~~~~~~~  334 (394)
T 4e7w_A          272 NYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLT----AIEALCHPFFDELRTGEAR  334 (394)
T ss_dssp             GGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCC----HHHHHTSGGGSTTTSSCCC
T ss_pred             hhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCC----HHHHhcChhhhhhcccccc
Confidence               01111          12347889999999999999999999    7999999999999886543

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.2e-46  Score=409.57  Aligned_cols=258  Identities=33%  Similarity=0.483  Sum_probs=219.2

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhh-----hhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS-----LASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETD  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~-----~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~  403 (730)
                      .++|++.+.||+|+||.||+|+++.+|+.||||+++...     .......+.+.+|+.+|+.+ +||||++++++|...
T Consensus        93 ~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  172 (365)
T 2y7j_A           93 YQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESS  172 (365)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBS
T ss_pred             hhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeC
Confidence            357999999999999999999999999999999997543     11223456788999999999 899999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ...||||||++|++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++...
T Consensus       173 ~~~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~  250 (365)
T 2y7j_A          173 SFMFLVFDLMRKGELFDYLTEK--VALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHL  250 (365)
T ss_dssp             SEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             CEEEEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCccccc
Confidence            9999999999999999988754  57999999999999999999999999999999999999999999999999998542


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ...                                                                             
T Consensus       251 ~~~-----------------------------------------------------------------------------  253 (365)
T 2y7j_A          251 EPG-----------------------------------------------------------------------------  253 (365)
T ss_dssp             CTT-----------------------------------------------------------------------------
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccccccccCcccCChhhhccC------CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC--CCCCCC
Q 004790          564 ARSMSFVGTHEYLAPEIIKGE------GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP--DSPATS  635 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~------~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p--~~~~~s  635 (730)
                      ......+||+.|+|||++.+.      .++.++|||||||++|||++|+.||.+......+..+......++  .+...+
T Consensus       254 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~  333 (365)
T 2y7j_A          254 EKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRS  333 (365)
T ss_dssp             CCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCHHHHSSSC
T ss_pred             cccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCC
Confidence            011235799999999999743      578899999999999999999999988665555555554444433  224678


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      .++.+||.+||..||.+||+    +.++++||||+
T Consensus       334 ~~~~~li~~~L~~dP~~Rps----~~ell~hp~f~  364 (365)
T 2y7j_A          334 STVKDLISRLLQVDPEARLT----AEQALQHPFFE  364 (365)
T ss_dssp             HHHHHHHHHHSCSSTTTSCC----HHHHHHSGGGC
T ss_pred             HHHHHHHHHHcCCChhHCcC----HHHHhcCcccC
Confidence            89999999999999999999    79999999997

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=1.9e-47  Score=409.14  Aligned_cols=253  Identities=29%  Similarity=0.474  Sum_probs=193.8

Q ss_pred             CCeEEE---eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCcccccccccccee
Q 004790          331 SHFRLL---KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFS  406 (730)
Q Consensus       331 ~~y~il---~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l  406 (730)
                      .+|++.   +.||+|+||+||+|+++.+++.||||++.+..      ...+++|+.+|+.+. ||||++++++|.++..+
T Consensus         8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~   81 (325)
T 3kn6_A            8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRM------EANTQKEITALKLCEGHPNIVKLHEVFHDQLHT   81 (325)
T ss_dssp             HHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGGG------HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             hccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChhh------hhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEE
Confidence            457765   78999999999999999999999999997642      234678999999996 99999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC---ceEEecccccccc
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG---HIMLSDFDLSLRC  483 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g---~vKL~DFGlA~~~  483 (730)
                      |||||||+||+|.+++...  ..+++..++.++.||+.||+|||++||+||||||+|||++.++   .+||+|||+++..
T Consensus        82 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~  159 (325)
T 3kn6_A           82 FLVMELLNGGELFERIKKK--KHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLK  159 (325)
T ss_dssp             EEEECCCCSCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEEC
T ss_pred             EEEEEccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceec
Confidence            9999999999999988765  5799999999999999999999999999999999999998766   8999999998532


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ...                                                                            .
T Consensus       160 ~~~----------------------------------------------------------------------------~  163 (325)
T 3kn6_A          160 PPD----------------------------------------------------------------------------N  163 (325)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             CCC----------------------------------------------------------------------------C
Confidence            100                                                                            0


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc-------cceeeeecccccCCC--CCCC
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-------ATLFNVVGQQLRFPD--SPAT  634 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-------~~l~~i~~~~~~~p~--~~~~  634 (730)
                      ......+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+..       ..+..+..+.+.++.  +..+
T Consensus       164 ~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  243 (325)
T 3kn6_A          164 QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNV  243 (325)
T ss_dssp             --------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTS
T ss_pred             CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCC
Confidence            0112357899999999999999999999999999999999999999875432       122223333333332  1357


Q ss_pred             ChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          635 SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       635 s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      +.++++||++||..||.+||+    ++++++||||++
T Consensus       244 s~~~~~li~~~L~~dP~~Rpt----~~ell~h~w~~~  276 (325)
T 3kn6_A          244 SQEAKDLIQGLLTVDPNKRLK----MSGLRYNEWLQD  276 (325)
T ss_dssp             CHHHHHHHHHHHCCCTTTCCC----TTTSTTCGGGCT
T ss_pred             CHHHHHHHHHHCCCChhHCCC----HHHHhcChhhcc
Confidence            899999999999999999999    689999999986

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=6.6e-47  Score=395.67  Aligned_cols=257  Identities=29%  Similarity=0.440  Sum_probs=212.1

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++.+.||+|+||.||+|+++.++..||+|++.+....  .....+.+|+++|+.++||||++++++|.+...+|+||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   99 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQ--VPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVM   99 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCC--SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccc--hhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEE
Confidence            6799999999999999999999999999999999875422  23456789999999999999999999999999999999


Q ss_pred             eecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe---cCCCceEEecccccccccC
Q 004790          411 EYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV---RDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl---~~~g~vKL~DFGlA~~~~~  485 (730)
                      ||++||+|.+++...  .+..+++..++.++.||+.||+|||++||+||||||+|||+   +.++.+||+|||++.....
T Consensus       100 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~  179 (285)
T 3is5_A          100 ETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKS  179 (285)
T ss_dssp             CCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC---
T ss_pred             EeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCC
Confidence            999999998877532  23579999999999999999999999999999999999999   4568899999999843210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                                                                                                   ...
T Consensus       180 -----------------------------------------------------------------------------~~~  182 (285)
T 3is5_A          180 -----------------------------------------------------------------------------DEH  182 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         001


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC-CCCCChhHHHHHHh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD-SPATSYASRDLIRG  644 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~-~~~~s~~~~dLI~~  644 (730)
                      ....+||+.|+|||++. ..++.++|||||||++|||++|+.||.+.........+......++. ....+.++.+||.+
T Consensus       183 ~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  261 (285)
T 3is5_A          183 STNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQ  261 (285)
T ss_dssp             ----CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHH
T ss_pred             CcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccccCcCCHHHHHHHHH
Confidence            12347999999999986 46899999999999999999999999886544443333322222221 23468899999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||..||.+||+    +.|+++||||++
T Consensus       262 ~L~~dP~~Rps----~~e~l~hp~f~~  284 (285)
T 3is5_A          262 MLTKDPERRPS----AAQVLHHEWFKQ  284 (285)
T ss_dssp             HTCSCTTTSCC----HHHHHTSGGGGC
T ss_pred             HccCChhhCcC----HHHHhcCHHhhc
Confidence            99999999999    799999999985

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.9e-47  Score=408.74  Aligned_cols=259  Identities=25%  Similarity=0.413  Sum_probs=216.7

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH-----HHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR-----KKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~-----~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      .++|++++.||+|+||+||+|+++.+++.||||++++......     .....+.+|+.+|+.++||||++++++|.+++
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~  102 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG  102 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence            3689999999999999999999999999999999987543221     12335678999999999999999999999999


Q ss_pred             eeeEEeeecCCC-CccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          405 FSCLVMEYCPGG-DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       405 ~l~LVmEy~~GG-sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      .+|+||||+.+| +|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...
T Consensus       103 ~~~lv~e~~~~g~~l~~~~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~  180 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFIDRH--PRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYL  180 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHHHTC--CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEEEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceEC
Confidence            999999999777 998888765  56999999999999999999999999999999999999999999999999998532


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                             .
T Consensus       181 ~~-----------------------------------------------------------------------------~  183 (335)
T 3dls_A          181 ER-----------------------------------------------------------------------------G  183 (335)
T ss_dssp             CT-----------------------------------------------------------------------------T
T ss_pred             CC-----------------------------------------------------------------------------C
Confidence            10                                                                             0


Q ss_pred             ccccccccCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      ......+||+.|+|||++.+..+ +.++|||||||++|||++|+.||.....      .......  ....++.++++||
T Consensus       184 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~------~~~~~~~--~~~~~~~~l~~li  255 (335)
T 3dls_A          184 KLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE------TVEAAIH--PPYLVSKELMSLV  255 (335)
T ss_dssp             CCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG------GTTTCCC--CSSCCCHHHHHHH
T ss_pred             CceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH------HHhhccC--CCcccCHHHHHHH
Confidence            01123579999999999999887 7899999999999999999999976321      1112222  2235789999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCCCC------CCcchhcc
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFFEG------VNWALIRC  679 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF~~------v~w~~~r~  679 (730)
                      .+||..||.+||+    ++++++||||+.      ++|..+..
T Consensus       256 ~~~L~~dP~~Rps----~~ell~hp~~~~~~~~~~~~~~~~~~  294 (335)
T 3dls_A          256 SGLLQPVPERRTT----LEKLVTDPWVTQPVNLADYTWEEVFR  294 (335)
T ss_dssp             HHHTCSSGGGSCC----HHHHHHCTTTTCCCCGGGCCHHHHC-
T ss_pred             HHHccCChhhCcC----HHHHhcCccccCCccccccCHHHHhh
Confidence            9999999999999    799999999975      56665543

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=2.3e-46  Score=416.63  Aligned_cols=255  Identities=25%  Similarity=0.388  Sum_probs=211.8

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc------CCCCCccccccccc
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL------DHPFLPTLYTHFET  402 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L------~HPnIV~L~~~f~~  402 (730)
                      ...+|++++.||+|+||+||+|++..+++.||||++....    .....+.+|+.+|+.+      +|+||++++++|..
T Consensus        95 ~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~  170 (429)
T 3kvw_A           95 VAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK----RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF  170 (429)
T ss_dssp             ETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE
T ss_pred             ccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc----chHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc
Confidence            4568999999999999999999999999999999997643    3344567888888877      67899999999999


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc--eEEeccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH--IMLSDFDLS  480 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~--vKL~DFGlA  480 (730)
                      ...+|+||||+ +++|.+++.......+++..++.|+.||+.||+|||++|||||||||+||||+.++.  +||+|||++
T Consensus       171 ~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a  249 (429)
T 3kvw_A          171 RNHICMTFELL-SMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSS  249 (429)
T ss_dssp             TTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred             CCeEEEEEecc-CCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccc
Confidence            99999999999 568988887765566999999999999999999999999999999999999999887  999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ....                                                                            
T Consensus       250 ~~~~----------------------------------------------------------------------------  253 (429)
T 3kvw_A          250 CYEH----------------------------------------------------------------------------  253 (429)
T ss_dssp             EETT----------------------------------------------------------------------------
T ss_pred             eecC----------------------------------------------------------------------------
Confidence            4310                                                                            


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc----------------
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ----------------  624 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~----------------  624 (730)
                         ....+.+||+.|+|||++.+..|+.++|||||||+||||++|++||.+.+..+.+..++..                
T Consensus       254 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~  330 (429)
T 3kvw_A          254 ---QRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAK  330 (429)
T ss_dssp             ---CCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHH
T ss_pred             ---CcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhh
Confidence               0112358999999999999999999999999999999999999999887654433222210                


Q ss_pred             --------------------------------cccC-CC--------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHH
Q 004790          625 --------------------------------QLRF-PD--------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEI  663 (730)
Q Consensus       625 --------------------------------~~~~-p~--------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~el  663 (730)
                                                      .... +.        ....+.++++||++||.+||.+|||    ++|+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpt----a~e~  406 (429)
T 3kvw_A          331 NFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMT----PGQA  406 (429)
T ss_dssp             HHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCC----HHHH
T ss_pred             hccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCC----HHHH
Confidence                                            0000 00        0123678899999999999999999    7999


Q ss_pred             HcCCCCCC
Q 004790          664 KQHPFFEG  671 (730)
Q Consensus       664 L~HPfF~~  671 (730)
                      |+||||+.
T Consensus       407 L~Hpw~~~  414 (429)
T 3kvw_A          407 LRHPWLRR  414 (429)
T ss_dssp             HTSTTTC-
T ss_pred             hCChhhcc
Confidence            99999986

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=8.2e-46  Score=393.42  Aligned_cols=255  Identities=25%  Similarity=0.419  Sum_probs=208.5

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccc--cce
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFET--DRF  405 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~--~~~  405 (730)
                      ..++|++++.||+|+||+||+|++..+++.||||+++...      ...+.+|+.+|+.+. ||||+++++++.+  ...
T Consensus        34 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~  107 (330)
T 3nsz_A           34 NQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK------KKKIKREIKILENLRGGPNIITLADIVKDPVSRT  107 (330)
T ss_dssp             EGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC------HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCC
T ss_pred             CCCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc------hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCc
Confidence            3578999999999999999999999999999999997532      245788999999996 9999999999987  678


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC-ceEEeccccccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG-HIMLSDFDLSLRCA  484 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g-~vKL~DFGlA~~~~  484 (730)
                      .|+||||+.+++|..+++     .+++..++.++.||+.||.|||++||+||||||+|||++.++ .+||+|||+++...
T Consensus       108 ~~lv~e~~~~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~  182 (330)
T 3nsz_A          108 PALVFEHVNNTDFKQLYQ-----TLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH  182 (330)
T ss_dssp             EEEEEECCCCCCHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred             eEEEEeccCchhHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcC
Confidence            999999999999988774     388999999999999999999999999999999999999776 89999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                             .
T Consensus       183 ~~-----------------------------------------------------------------------------~  185 (330)
T 3nsz_A          183 PG-----------------------------------------------------------------------------Q  185 (330)
T ss_dssp             TT-----------------------------------------------------------------------------C
T ss_pred             CC-----------------------------------------------------------------------------C
Confidence            00                                                                             0


Q ss_pred             cccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeeec-------------------
Q 004790          565 RSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVG-------------------  623 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~~-------------------  623 (730)
                      .....+||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... +.+..+..                   
T Consensus       186 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
T 3nsz_A          186 EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELD  265 (330)
T ss_dssp             CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCC
T ss_pred             ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccc
Confidence            0113478999999999988 66899999999999999999999999543221 11111100                   


Q ss_pred             ----------------ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          624 ----------------QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       624 ----------------~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                                      ..........++.++++||++||.+||.+|||    ++|+|+||||+++.|.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----a~e~l~hp~f~~~~~~  329 (330)
T 3nsz_A          266 PRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLT----AREAMEHPYFYTVVKD  329 (330)
T ss_dssp             THHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCC----HHHHHTSGGGTTCC--
T ss_pred             cchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCC----HHHHhcCccHhhhccC
Confidence                            00001111236889999999999999999999    7999999999998764

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=4.5e-46  Score=403.46  Aligned_cols=259  Identities=24%  Similarity=0.375  Sum_probs=213.9

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc-----ce
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD-----RF  405 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~-----~~  405 (730)
                      ++|++++.||+|+||.||+|++..+++.||||++....  .......+.+|+++|+.++||||+++++++...     ..
T Consensus        27 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  104 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE--HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD  104 (364)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT--CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred             ccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc--CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccce
Confidence            68999999999999999999999999999999997532  334556788999999999999999999998654     47


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|+||||+. |+|..++...   .+++..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||++.....
T Consensus       105 ~~iv~e~~~-~~L~~~l~~~---~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~  180 (364)
T 3qyz_A          105 VYIVQDLME-TDLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADP  180 (364)
T ss_dssp             EEEEEECCS-EEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred             EEEEEcccC-cCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEecCC
Confidence            899999995 6898887653   699999999999999999999999999999999999999999999999999854211


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ...                                                                         ....
T Consensus       181 ~~~-------------------------------------------------------------------------~~~~  187 (364)
T 3qyz_A          181 DHD-------------------------------------------------------------------------HTGF  187 (364)
T ss_dssp             GGC-------------------------------------------------------------------------BCCT
T ss_pred             CCC-------------------------------------------------------------------------cccc
Confidence            000                                                                         0001


Q ss_pred             ccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc------------------
Q 004790          566 SMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL------------------  626 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~------------------  626 (730)
                      ....+||+.|+|||++.+. .++.++|||||||++|+|++|+.||.+....+.+..+.....                  
T Consensus       188 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  267 (364)
T 3qyz_A          188 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNY  267 (364)
T ss_dssp             TCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHH
T ss_pred             ccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHH
Confidence            1235899999999997654 589999999999999999999999998776655544432100                  


Q ss_pred             --cCCC---------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          627 --RFPD---------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       627 --~~p~---------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                        .++.         .+..+.++.+||.+||.+||.+||+    +.|+++||||+..
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~hp~~~~~  320 (364)
T 3qyz_A          268 LLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIE----VEQALAHPYLEQY  320 (364)
T ss_dssp             HHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCC----HHHHHTSGGGTTT
T ss_pred             HHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCC----HHHHhcCcchhhc
Confidence              0010         1356889999999999999999999    7999999999975

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=5.5e-47  Score=410.87  Aligned_cols=259  Identities=22%  Similarity=0.347  Sum_probs=208.5

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC--------CCCCccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD--------HPFLPTL  396 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~--------HPnIV~L  396 (730)
                      .+.+..++|++++.||+|+||+||+|++..+++.||||++.+..    .....+.+|+.+|+.+.        ||||+++
T Consensus        31 ~g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~  106 (397)
T 1wak_A           31 IGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE----HYTETALDEIRLLKSVRNSDPNDPNREMVVQL  106 (397)
T ss_dssp             TTCEETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCE
T ss_pred             hhhhcCCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC----cchHHHHHHHHHHHHHhhcCCCCCCcceeeee
Confidence            34455689999999999999999999999999999999997542    34456789999999885        7889999


Q ss_pred             ccccc----ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhc-ceeecccCCccEEecCCC-
Q 004790          397 YTHFE----TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML-GVVYRDLKPENVLVRDDG-  470 (730)
Q Consensus       397 ~~~f~----~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~-gIVHRDLKPeNILl~~~g-  470 (730)
                      +++|.    ....+||||||+ +++|..++.......+++..++.|+.||+.||.|||++ |||||||||+||||+.++ 
T Consensus       107 ~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~  185 (397)
T 1wak_A          107 LDDFKISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQ  185 (397)
T ss_dssp             EEEEEEEETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHH
T ss_pred             ecceeecCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccch
Confidence            99997    677899999999 66666655555446799999999999999999999998 999999999999999876 


Q ss_pred             ------------------------------------------------ceEEecccccccccCCCcccccCCCCCCCCCC
Q 004790          471 ------------------------------------------------HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRR  502 (730)
Q Consensus       471 ------------------------------------------------~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~  502 (730)
                                                                      .+||+|||++.....                 
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~-----------------  248 (397)
T 1wak_A          186 YIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHK-----------------  248 (397)
T ss_dssp             HHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTB-----------------
T ss_pred             hhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccc-----------------
Confidence                                                            799999998843210                 


Q ss_pred             CCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhc
Q 004790          503 GPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIK  582 (730)
Q Consensus       503 ~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~  582 (730)
                                                                                    .....+||+.|+|||++.
T Consensus       249 --------------------------------------------------------------~~~~~~gt~~y~aPE~~~  266 (397)
T 1wak_A          249 --------------------------------------------------------------HFTEDIQTRQYRSLEVLI  266 (397)
T ss_dssp             --------------------------------------------------------------CSCSCCSCGGGCCHHHHH
T ss_pred             --------------------------------------------------------------cCccCCCCCcccCChhhc
Confidence                                                                          011347999999999999


Q ss_pred             cCCCCCcceeechhHHHHHHhhCCCCCCCCCCcccee------eee---cc---------cc------------c-----
Q 004790          583 GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF------NVV---GQ---------QL------------R-----  627 (730)
Q Consensus       583 g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~------~i~---~~---------~~------------~-----  627 (730)
                      +..++.++|||||||+||||++|+.||.+........      .+.   ..         ..            .     
T Consensus       267 ~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (397)
T 1wak_A          267 GSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLK  346 (397)
T ss_dssp             TSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCC
T ss_pred             CCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccC
Confidence            9999999999999999999999999998755332110      000   00         00            0     


Q ss_pred             -----------CCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          628 -----------FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       628 -----------~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                                 +......+.++++||.+||.+||.+||+    ++|+|+||||++
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~e~l~hp~~~~  397 (397)
T 1wak_A          347 PWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRAT----AAECLRHPWLNS  397 (397)
T ss_dssp             CCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCC----HHHHHTSGGGGC
T ss_pred             CcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCC----HHHHhhCccccC
Confidence                       0001122456889999999999999999    799999999973

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.6e-46  Score=395.25  Aligned_cols=253  Identities=23%  Similarity=0.352  Sum_probs=211.5

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .+..++|++++.||+|+||.||+|++..+++.||+|++.............+.+|+.+++.++||||+++++++.+++.+
T Consensus         7 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~   86 (294)
T 4eqm_A            7 KIINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCY   86 (294)
T ss_dssp             SCEETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEE
T ss_pred             hHhhccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeE
Confidence            35568999999999999999999999999999999999766555566778899999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||++|++|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++++||+|||++......
T Consensus        87 ~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  164 (294)
T 4eqm_A           87 YLVMEYIEGPTLSEYIESH--GPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSET  164 (294)
T ss_dssp             EEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC---
T ss_pred             EEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCccccccc
Confidence            9999999999999988765  57999999999999999999999999999999999999999999999999998432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       165 ---------------------------------------------------------------------------~~~~~  169 (294)
T 4eqm_A          165 ---------------------------------------------------------------------------SLTQT  169 (294)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00011


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccccc---CCCCCCCChhHHHHHH
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR---FPDSPATSYASRDLIR  643 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~---~p~~~~~s~~~~dLI~  643 (730)
                      ...+||+.|+|||++.+..++.++|||||||++|||++|+.||.+........+.+.....   ......++..+.++|.
T Consensus       170 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  249 (294)
T 4eqm_A          170 NHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVIL  249 (294)
T ss_dssp             -----CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHH
T ss_pred             CccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCcchhcccCCCHHHHHHHH
Confidence            2357999999999999999999999999999999999999999887654443333332221   1123467899999999


Q ss_pred             hhhcCCCCCcCCc
Q 004790          644 GLLVKEPQHRLGV  656 (730)
Q Consensus       644 ~lL~~DP~~R~t~  656 (730)
                      +||.+||.+||+.
T Consensus       250 ~~l~~dp~~R~~~  262 (294)
T 4eqm_A          250 RATEKDKANRYKT  262 (294)
T ss_dssp             HHSCSSGGGSCSS
T ss_pred             HHhcCCHhHcccc
Confidence            9999999999963

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=5.2e-48  Score=421.00  Aligned_cols=253  Identities=17%  Similarity=0.178  Sum_probs=202.6

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHH---HHhcCCCCCcccc-------cc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI---LQLLDHPFLPTLY-------TH  399 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~I---L~~L~HPnIV~L~-------~~  399 (730)
                      .++|++++.||+|+||+||+|++..+++.||||++.+.........+.+.+|+.+   |+.++||||++++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            4689999999999999999999999999999999986544444556778899955   4555899999999       44


Q ss_pred             ccccc-----------------eeeEEeeecCCCCccccccccC-----CCCccHHHHHHhHHHHHHHHHHhHhcceeec
Q 004790          400 FETDR-----------------FSCLVMEYCPGGDLHTLRQRQP-----GKHFSEYAARFYAAEVLLALEYLHMLGVVYR  457 (730)
Q Consensus       400 f~~~~-----------------~l~LVmEy~~GGsL~~ll~~~~-----~~~lse~~a~~~~~qIl~AL~yLH~~gIVHR  457 (730)
                      +++.+                 ..||||||+ +|+|.+++....     ...+++..++.|+.||+.||+|||++|||||
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHr  230 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT  230 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecC
Confidence            44332                 389999999 789999887541     1223447888899999999999999999999


Q ss_pred             ccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccc
Q 004790          458 DLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNK  537 (730)
Q Consensus       458 DLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~  537 (730)
                      ||||+||||+.+|.+||+|||+++...                                                     
T Consensus       231 Dikp~NIll~~~~~~kL~DFG~a~~~~-----------------------------------------------------  257 (377)
T 3byv_A          231 YLRPVDIVLDQRGGVFLTGFEHLVRDG-----------------------------------------------------  257 (377)
T ss_dssp             CCCGGGEEECTTCCEEECCGGGCEETT-----------------------------------------------------
T ss_pred             CCCHHHEEEcCCCCEEEEechhheecC-----------------------------------------------------
Confidence            999999999999999999999985310                                                     


Q ss_pred             cccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccC-----------CCCCcceeechhHHHHHHhhCC
Q 004790          538 KKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGE-----------GHGSAVDWWTFGIFLHELLYGK  606 (730)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~-----------~~~~~sDIWSLG~iLyELltG~  606 (730)
                                                ......+| +.|+|||++.+.           .++.++|||||||+||||++|+
T Consensus       258 --------------------------~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~  310 (377)
T 3byv_A          258 --------------------------ARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCAD  310 (377)
T ss_dssp             --------------------------CEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred             --------------------------CcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCC
Confidence                                      01123478 999999999988           8999999999999999999999


Q ss_pred             CCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          607 TPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       607 ~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      .||.+......+..+..      ....++.++++||.+||..||++||+    +.++++||||+++.
T Consensus       311 ~Pf~~~~~~~~~~~~~~------~~~~~~~~~~~li~~~L~~dp~~Rpt----~~e~l~hp~f~~~~  367 (377)
T 3byv_A          311 LPITKDAALGGSEWIFR------SCKNIPQPVRALLEGFLRYPKEDRLL----PLQAMETPEYEQLR  367 (377)
T ss_dssp             CCC------CCSGGGGS------SCCCCCHHHHHHHHHHTCSSGGGCCC----HHHHHTSHHHHHHH
T ss_pred             CCCcccccccchhhhhh------hccCCCHHHHHHHHHHcCCCchhCCC----HHHHhhChHHHHHH
Confidence            99988665544433322      22467899999999999999999999    79999999998754

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4.7e-47  Score=414.29  Aligned_cols=257  Identities=28%  Similarity=0.492  Sum_probs=208.8

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc-------
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE-------  401 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~-------  401 (730)
                      ..++|++++.||+|+||+||+|++..+++.||||++.....       ...+|+++|+.++||||++++++|.       
T Consensus         5 ~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~-------~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~   77 (383)
T 3eb0_A            5 SSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR-------YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEP   77 (383)
T ss_dssp             -CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT-------SCCHHHHHHTTCCCTTBCCEEEEEEEC-----
T ss_pred             ccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc-------hHHHHHHHHHHcCCCCccchhheeeecCcccc
Confidence            45789999999999999999999999999999999865432       1347999999999999999999983       


Q ss_pred             -------------------------------ccceeeEEeeecCCCCccccccc--cCCCCccHHHHHHhHHHHHHHHHH
Q 004790          402 -------------------------------TDRFSCLVMEYCPGGDLHTLRQR--QPGKHFSEYAARFYAAEVLLALEY  448 (730)
Q Consensus       402 -------------------------------~~~~l~LVmEy~~GGsL~~ll~~--~~~~~lse~~a~~~~~qIl~AL~y  448 (730)
                                                     .+.++|+||||++ |+|..++..  ..+..+++..++.|+.||+.||.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~  156 (383)
T 3eb0_A           78 KPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGF  156 (383)
T ss_dssp             --------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence                                           3445899999996 577766543  234679999999999999999999


Q ss_pred             hHhcceeecccCCccEEec-CCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCc
Q 004790          449 LHMLGVVYRDLKPENVLVR-DDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACF  527 (730)
Q Consensus       449 LH~~gIVHRDLKPeNILl~-~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~  527 (730)
                      ||++||+||||||+|||++ .++.+||+|||+++.+...                                         
T Consensus       157 LH~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~-----------------------------------------  195 (383)
T 3eb0_A          157 IHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPS-----------------------------------------  195 (383)
T ss_dssp             HHTTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTT-----------------------------------------
T ss_pred             HHHCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCC-----------------------------------------
Confidence            9999999999999999998 6899999999998542100                                         


Q ss_pred             cCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCC
Q 004790          528 IPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGK  606 (730)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~  606 (730)
                                                          ......+||+.|+|||++.+.. ++.++|||||||++|||++|+
T Consensus       196 ------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~  239 (383)
T 3eb0_A          196 ------------------------------------EPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGK  239 (383)
T ss_dssp             ------------------------------------SCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSS
T ss_pred             ------------------------------------CCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCC
Confidence                                                0112347899999999998865 899999999999999999999


Q ss_pred             CCCCCCCCccceeeeecc-----------------cccCC----------CCCCCChhHHHHHHhhhcCCCCCcCCchhc
Q 004790          607 TPFKGSGNRATLFNVVGQ-----------------QLRFP----------DSPATSYASRDLIRGLLVKEPQHRLGVKRG  659 (730)
Q Consensus       607 ~PF~g~~~~~~l~~i~~~-----------------~~~~p----------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~  659 (730)
                      .||.+.+..+.+..++..                 ...+|          .....+.++++||.+||.+||.+|||    
T Consensus       240 ~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----  315 (383)
T 3eb0_A          240 PLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRIN----  315 (383)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCC----
T ss_pred             CCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCC----
Confidence            999987665555444320                 11111          12346888999999999999999999    


Q ss_pred             HHHHHcCCCCCCCCc
Q 004790          660 ATEIKQHPFFEGVNW  674 (730)
Q Consensus       660 a~elL~HPfF~~v~w  674 (730)
                      +.|+++||||+.+.+
T Consensus       316 ~~e~l~hp~f~~~~~  330 (383)
T 3eb0_A          316 PYEAMAHPFFDHLRN  330 (383)
T ss_dssp             HHHHHTSGGGHHHHH
T ss_pred             HHHHhcCHHHHHHHh
Confidence            799999999997654

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-46  Score=395.19  Aligned_cols=264  Identities=27%  Similarity=0.424  Sum_probs=216.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhh-HHHHHHHHHHHHHHHhcCCCCCccccccc--ccccee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS-RKKLTRAQTEREILQLLDHPFLPTLYTHF--ETDRFS  406 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~-~~~~~~~~~E~~IL~~L~HPnIV~L~~~f--~~~~~l  406 (730)
                      .++|++++.||+|+||.||+|.+..+++.||+|++.+..... ......+.+|+++|+.++||||+++++++  .+...+
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            468999999999999999999999999999999998764332 23456788999999999999999999998  556789


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+.++ |.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......
T Consensus        84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~  162 (305)
T 2wtk_C           84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPF  162 (305)
T ss_dssp             EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTT
T ss_pred             EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccccCcc
Confidence            9999999776 666666655678999999999999999999999999999999999999999999999999998542100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      .                                                                          .....
T Consensus       163 ~--------------------------------------------------------------------------~~~~~  168 (305)
T 2wtk_C          163 A--------------------------------------------------------------------------ADDTC  168 (305)
T ss_dssp             C--------------------------------------------------------------------------SSCEE
T ss_pred             c--------------------------------------------------------------------------ccccc
Confidence            0                                                                          00011


Q ss_pred             cccccCcccCChhhhccCCC--CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHh
Q 004790          567 MSFVGTHEYLAPEIIKGEGH--GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~--~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~  644 (730)
                      ....||+.|+|||++.+...  +.++|||||||++|||++|+.||.+.+....+..+......++  ..++..+.+||.+
T Consensus       169 ~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~--~~~~~~l~~li~~  246 (305)
T 2wtk_C          169 RTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIP--GDCGPPLSDLLKG  246 (305)
T ss_dssp             CCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCC--SSSCHHHHHHHHH
T ss_pred             ccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCCCCCC--CccCHHHHHHHHH
Confidence            23469999999999987654  7799999999999999999999988665544444444444443  4678999999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      ||..||.+||+    ++++++||||+....
T Consensus       247 ~l~~dp~~Rps----~~~ll~~~~~~~~~~  272 (305)
T 2wtk_C          247 MLEYEPAKRFS----IRQIRQHSWFRKKHP  272 (305)
T ss_dssp             HTCSSTTTSCC----HHHHHHSHHHHSCCC
T ss_pred             HccCChhhCCC----HHHHhcCcccccCCC
Confidence            99999999999    799999999987543

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=1.3e-46  Score=407.32  Aligned_cols=256  Identities=28%  Similarity=0.375  Sum_probs=219.8

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +.|++++.||+|+||+||+|++..+++.||||++.............+.+|+++|+.++||||++++++|.++..+||||
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            46999999999999999999999999999999998665555566678899999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||+. |+|.+++... ...+++..++.++.||+.||.|||++||+||||||+||||+.+|++||+|||++....      
T Consensus       134 e~~~-g~l~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~------  205 (348)
T 1u5q_A          134 EYCL-GSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA------  205 (348)
T ss_dssp             ECCS-EEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSS------
T ss_pred             ecCC-CCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecC------
Confidence            9996 6777766543 2578999999999999999999999999999999999999999999999999984310      


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                                .....+
T Consensus       206 --------------------------------------------------------------------------~~~~~~  211 (348)
T 1u5q_A          206 --------------------------------------------------------------------------PANSFV  211 (348)
T ss_dssp             --------------------------------------------------------------------------SBCCCC
T ss_pred             --------------------------------------------------------------------------CCCccc
Confidence                                                                                      011347


Q ss_pred             cCcccCChhhhc---cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          571 GTHEYLAPEIIK---GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       571 GT~~Y~APEvl~---g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      ||+.|+|||++.   +..++.++|||||||++|||++|+.||.+.+....+..+............++..+++||.+||.
T Consensus       212 gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  291 (348)
T 1u5q_A          212 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQ  291 (348)
T ss_dssp             SCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTC
T ss_pred             CCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcc
Confidence            999999999996   45689999999999999999999999988766555555544443333345678999999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      .||++||+    ++++++||||...
T Consensus       292 ~dP~~Rps----~~~ll~h~~~~~~  312 (348)
T 1u5q_A          292 KIPQDRPT----SEVLLKHRFVLRE  312 (348)
T ss_dssp             SSGGGSCC----HHHHTTCHHHHSC
T ss_pred             cChhhCcC----HHHHhhChhhhcc
Confidence            99999999    7999999999753

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=7.8e-47  Score=406.16  Aligned_cols=266  Identities=26%  Similarity=0.341  Sum_probs=210.6

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc-------
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET-------  402 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~-------  402 (730)
                      .++|++++.||+|+||+||+|++..+++.||||++....... .....+.+|+++|+.++||||+++++++.+       
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   94 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE-GFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   94 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSS-SSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccc-cchHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence            478999999999999999999999999999999986553222 223456789999999999999999999876       


Q ss_pred             -cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          403 -DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       403 -~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                       .+.+||||||+.| +|...+... ...+++..++.++.||+.||.|||++||+||||||+||||+.++++||+|||+++
T Consensus        95 ~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~  172 (351)
T 3mi9_A           95 CKGSIYLVFDFCEH-DLAGLLSNV-LVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR  172 (351)
T ss_dssp             --CEEEEEEECCSE-EHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CCceEEEEEeccCC-CHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhcc
Confidence             4578999999964 666655543 2469999999999999999999999999999999999999999999999999986


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      .+......                                                                        
T Consensus       173 ~~~~~~~~------------------------------------------------------------------------  180 (351)
T 3mi9_A          173 AFSLAKNS------------------------------------------------------------------------  180 (351)
T ss_dssp             ECCCCSSS------------------------------------------------------------------------
T ss_pred             cccccccc------------------------------------------------------------------------
Confidence            43110000                                                                        


Q ss_pred             ccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCC-----
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPA-----  633 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~-----  633 (730)
                      ........+||+.|+|||++.+. .++.++|||||||++|||++|+.||.+......+..+......++.  .+.     
T Consensus       181 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  260 (351)
T 3mi9_A          181 QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYE  260 (351)
T ss_dssp             SCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCG
T ss_pred             cccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhccccccch
Confidence            00112235799999999999875 5799999999999999999999999987654444333221111110  000     


Q ss_pred             -----------------------CChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          634 -----------------------TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       634 -----------------------~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                                             .+.++++||.+||.+||.+||+    ++|+++||||....+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~hp~f~~~~~  320 (351)
T 3mi9_A          261 LYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRID----SDDALNHDFFWSDPM  320 (351)
T ss_dssp             GGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGGSSSC
T ss_pred             hhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCC----HHHHhCCCCcCCCCC
Confidence                                   2567899999999999999999    799999999986443

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=9.7e-47  Score=399.14  Aligned_cols=262  Identities=24%  Similarity=0.336  Sum_probs=214.1

Q ss_pred             cCCccccCCeEEEeEEccCCcEEEEEEEE-CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCC------CCccc
Q 004790          324 RDGILGMSHFRLLKRLGCGDIGSVYLSEL-SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP------FLPTL  396 (730)
Q Consensus       324 ~~~~l~~~~y~il~~LG~G~fG~Vyla~~-~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HP------nIV~L  396 (730)
                      +.+.+..++|++++.||+|+||+||+|.+ ..+++.||||+++...    .....+.+|+++++.++|+      +|+++
T Consensus         7 ~~g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~   82 (339)
T 1z57_A            7 QSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD----RYCEAARSEIQVLEHLNTTDPNSTFRCVQM   82 (339)
T ss_dssp             STTCEETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH----HHHHHHHHHHHHHHHHHHHCTTCTTCBCCE
T ss_pred             ecCCCccCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC----chhHHHHHHHHHHHHhhhcCCCCceeeEee
Confidence            34556678999999999999999999998 5688999999997542    3445678899999988665      49999


Q ss_pred             cccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC--------
Q 004790          397 YTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD--------  468 (730)
Q Consensus       397 ~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~--------  468 (730)
                      +++|.+.+.+|+||||+ +++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++.        
T Consensus        83 ~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~  161 (339)
T 1z57_A           83 LEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYN  161 (339)
T ss_dssp             EEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC
T ss_pred             ecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccC
Confidence            99999999999999999 999999887765557899999999999999999999999999999999999987        


Q ss_pred             -----------CCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccc
Q 004790          469 -----------DGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNK  537 (730)
Q Consensus       469 -----------~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~  537 (730)
                                 ++.+||+|||++....                                                     
T Consensus       162 ~~~~~~~~~~~~~~~kl~Dfg~~~~~~-----------------------------------------------------  188 (339)
T 1z57_A          162 PKIKRDERTLINPDIKVVDFGSATYDD-----------------------------------------------------  188 (339)
T ss_dssp             ----CEEEEESCCCEEECCCSSCEETT-----------------------------------------------------
T ss_pred             CccccccccccCCCceEeeCcccccCc-----------------------------------------------------
Confidence                       6689999999984310                                                     


Q ss_pred             cccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccc
Q 004790          538 KKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT  617 (730)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~  617 (730)
                                                ......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+..+.
T Consensus       189 --------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~  242 (339)
T 1z57_A          189 --------------------------EHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEH  242 (339)
T ss_dssp             --------------------------SCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHH
T ss_pred             --------------------------cccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHH
Confidence                                      001134799999999999999999999999999999999999999987654332


Q ss_pred             eeeeeccc---------------------ccC---------------------CCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          618 LFNVVGQQ---------------------LRF---------------------PDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       618 l~~i~~~~---------------------~~~---------------------p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      +..+....                     ..+                     ......+.++.+||.+||..||.+||+
T Consensus       243 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt  322 (339)
T 1z57_A          243 LAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRIT  322 (339)
T ss_dssp             HHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCC
T ss_pred             HHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccC
Confidence            22111000                     000                     001123467889999999999999999


Q ss_pred             chhcHHHHHcCCCCCCCC
Q 004790          656 VKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       656 ~~~~a~elL~HPfF~~v~  673 (730)
                          ++|+++||||+.+.
T Consensus       323 ----~~ell~hp~f~~~~  336 (339)
T 1z57_A          323 ----LREALKHPFFDLLK  336 (339)
T ss_dssp             ----HHHHTTSGGGGGGG
T ss_pred             ----HHHHhcCHHHHHHh
Confidence                79999999998754

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-46  Score=404.31  Aligned_cols=260  Identities=26%  Similarity=0.420  Sum_probs=211.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC--CCCccccccccccce
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH--PFLPTLYTHFETDRF  405 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H--PnIV~L~~~f~~~~~  405 (730)
                      +...+|++++.||+|+||.||++.+. +++.||||++..... .......+.+|+.+|+.++|  |||+++++++.++..
T Consensus         6 ~~~~~y~i~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~   83 (343)
T 3dbq_A            6 VKGRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQY   83 (343)
T ss_dssp             SSSCEEEEEEEESCCSSEEEEEEECT-TSCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred             eecCEEEEEEEEecCCCeEEEEEEeC-CCCEEEEEEeecccc-chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCE
Confidence            45678999999999999999999985 578999999976543 33556778999999999976  999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|||||| .+++|.+++...  ..+++..++.|+.||+.||.|||++||+||||||+||||+ ++.+||+|||+++....
T Consensus        84 ~~lv~e~-~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~  159 (343)
T 3dbq_A           84 IYMVMEC-GNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP  159 (343)
T ss_dssp             EEEEECC-CSEEHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC--
T ss_pred             EEEEEeC-CCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccccCc
Confidence            9999995 588999988765  5799999999999999999999999999999999999997 68999999999853210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ..                                                                          ....
T Consensus       160 ~~--------------------------------------------------------------------------~~~~  165 (343)
T 3dbq_A          160 DT--------------------------------------------------------------------------TSVV  165 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc--------------------------------------------------------------------------cccc
Confidence            00                                                                          0001


Q ss_pred             ccccccCcccCChhhhcc-----------CCCCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeeecccccCCCCCC
Q 004790          566 SMSFVGTHEYLAPEIIKG-----------EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVGQQLRFPDSPA  633 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g-----------~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~~~~~~~p~~~~  633 (730)
                      ....+||+.|+|||++.+           ..++.++|||||||++|||++|+.||.+.... ..+..++...........
T Consensus       166 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  245 (343)
T 3dbq_A          166 KDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDI  245 (343)
T ss_dssp             ----CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCC
T ss_pred             CCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcccCCccc
Confidence            124589999999999976           56889999999999999999999999865432 222333333333344445


Q ss_pred             CChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          634 TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       634 ~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      .+.++++||.+||..||.+||+    +.++++||||+.
T Consensus       246 ~~~~l~~li~~~L~~dp~~Rpt----~~e~l~hp~~~~  279 (343)
T 3dbq_A          246 PEKDLQDVLKCCLKRDPKQRIS----IPELLAHPYVQI  279 (343)
T ss_dssp             SCHHHHHHHHHHTCSSTTTSCC----HHHHHTSHHHHS
T ss_pred             CCHHHHHHHHHHcCCChhHCCC----HHHHHhCccccc
Confidence            6789999999999999999999    799999999974

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=3e-46  Score=390.23  Aligned_cols=256  Identities=23%  Similarity=0.390  Sum_probs=214.2

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc----cce
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET----DRF  405 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~----~~~  405 (730)
                      ...|++.+.||+|+||.||+|.+..++..||+|++...... ......+.+|+.+|+.++||||++++++|..    ...
T Consensus        25 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~  103 (290)
T 1t4h_A           25 GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKC  103 (290)
T ss_dssp             SCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEE
T ss_pred             ceeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhC-HHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCce
Confidence            35699999999999999999999999999999999765443 3456778999999999999999999998864    567


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc--eeecccCCccEEec-CCCceEEeccccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG--VVYRDLKPENVLVR-DDGHIMLSDFDLSLR  482 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g--IVHRDLKPeNILl~-~~g~vKL~DFGlA~~  482 (730)
                      +|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++|  |+||||||+|||++ .++.+||+|||++..
T Consensus       104 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~  181 (290)
T 1t4h_A          104 IVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             EEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             EEEEEEecCCCCHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccc
Confidence            99999999999999988765  56899999999999999999999999  99999999999997 789999999999842


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ...                                                                             
T Consensus       182 ~~~-----------------------------------------------------------------------------  184 (290)
T 1t4h_A          182 KRA-----------------------------------------------------------------------------  184 (290)
T ss_dssp             CCT-----------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-ccCCCCCCCChhHHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-LRFPDSPATSYASRDL  641 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-~~~p~~~~~s~~~~dL  641 (730)
                       ......+||+.|+|||++.+ .++.++|||||||++|+|++|+.||.+......+...+... .........+.++++|
T Consensus       185 -~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  262 (290)
T 1t4h_A          185 -SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEI  262 (290)
T ss_dssp             -TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHH
T ss_pred             -cccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCccccCCCCCHHHHHH
Confidence             01123479999999998875 48999999999999999999999998765544444333222 2222234567899999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |.+||..||.+||+    ++++++||||++
T Consensus       263 i~~~l~~dp~~Rps----~~ell~h~~f~~  288 (290)
T 1t4h_A          263 IEGCIRQNKDERYS----IKDLLNHAFFQE  288 (290)
T ss_dssp             HHHHSCSSGGGSCC----HHHHHTSGGGC-
T ss_pred             HHHHccCChhhCCC----HHHHhhCccccc
Confidence            99999999999999    799999999986

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=9.8e-47  Score=396.99  Aligned_cols=255  Identities=29%  Similarity=0.459  Sum_probs=217.6

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||.||+|++..+++.||+|++.+...   .....+.+|+.+|+.++||||+++++++.++..+|+|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA---FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV   84 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC---------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc---cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence            3679999999999999999999999999999999976532   2234578899999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe---cCCCceEEecccccccccCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV---RDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl---~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |||++|++|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||+   +.++.+||+|||++....  
T Consensus        85 ~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~--  160 (304)
T 2jam_A           85 MQLVSGGELFDRILER--GVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ--  160 (304)
T ss_dssp             ECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC--
T ss_pred             EEcCCCccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecC--
Confidence            9999999999887654  568999999999999999999999999999999999999   778999999999873210  


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                  ....
T Consensus       161 ----------------------------------------------------------------------------~~~~  164 (304)
T 2jam_A          161 ----------------------------------------------------------------------------NGIM  164 (304)
T ss_dssp             ----------------------------------------------------------------------------CBTT
T ss_pred             ----------------------------------------------------------------------------CCcc
Confidence                                                                                        0001


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC--CCCCCChhHHHHHHh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP--DSPATSYASRDLIRG  644 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p--~~~~~s~~~~dLI~~  644 (730)
                      ...+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+......+..+..+...++  ....++.++++||.+
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~  244 (304)
T 2jam_A          165 STACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICH  244 (304)
T ss_dssp             HHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHH
T ss_pred             ccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHH
Confidence            234799999999999999999999999999999999999999988766555555554444433  235678999999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||..||.+||+    ++++++||||++
T Consensus       245 ~l~~dp~~Rps----~~~~l~h~~~~~  267 (304)
T 2jam_A          245 LLEKDPNERYT----CEKALSHPWIDG  267 (304)
T ss_dssp             HHCSSTTTSCC----HHHHHTSHHHHS
T ss_pred             HcCCChhHCcC----HHHHhcCccccC
Confidence            99999999999    799999999986

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-46  Score=399.12  Aligned_cols=264  Identities=28%  Similarity=0.391  Sum_probs=216.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccc----
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFET----  402 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~----  402 (730)
                      ...++|++++.||+|+||.||+|++..+++.||||++......    ...+.+|+.+|+.+ +||||++++++|..    
T Consensus        21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~----~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~   96 (326)
T 2x7f_A           21 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDE----EEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP   96 (326)
T ss_dssp             CCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSST----THHHHHHHHHHHHHCCSTTBCCEEEEEEECC--
T ss_pred             CCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCccc----HHHHHHHHHHHHhccCCCCeeeeeeEEeeccCc
Confidence            3457899999999999999999999999999999999754322    24577899999998 89999999999976    


Q ss_pred             --cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          403 --DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       403 --~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                        ...+|+||||+++++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus        97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~  176 (326)
T 2x7f_A           97 GMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVS  176 (326)
T ss_dssp             CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTT
T ss_pred             cccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCc
Confidence              568999999999999999988765567999999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      .....                                                                           
T Consensus       177 ~~~~~---------------------------------------------------------------------------  181 (326)
T 2x7f_A          177 AQLDR---------------------------------------------------------------------------  181 (326)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             eecCc---------------------------------------------------------------------------
Confidence            43210                                                                           


Q ss_pred             cccccccccccCcccCChhhhc-----cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCC
Q 004790          561 PTAARSMSFVGTHEYLAPEIIK-----GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATS  635 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~-----g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s  635 (730)
                       ........+||+.|+|||++.     +..++.++|||||||++|+|++|+.||.+......+..+............++
T Consensus       182 -~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (326)
T 2x7f_A          182 -TVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWS  260 (326)
T ss_dssp             ----------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCSCSC
T ss_pred             -CccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCccccCCccccC
Confidence             000112357999999999997     55689999999999999999999999987665544444433333323345678


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      ..+++||.+||..||.+||+    ++++++||||++..+.
T Consensus       261 ~~l~~li~~~l~~dp~~Rps----~~~ll~hp~~~~~~~~  296 (326)
T 2x7f_A          261 KKFQSFIESCLVKNHSQRPA----TEQLMKHPFIRDQPNE  296 (326)
T ss_dssp             HHHHHHHHHHCCSSGGGSCC----HHHHHTSHHHHCCTTH
T ss_pred             HHHHHHHHHHhccChhhCCC----HHHHhhChHHhhCccc
Confidence            99999999999999999999    7999999999987654

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=5.4e-46  Score=404.60  Aligned_cols=257  Identities=30%  Similarity=0.402  Sum_probs=213.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee---
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS---  406 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l---  406 (730)
                      .++|++++.||+|+||+||+|++..+++.||||++.+.. ........+.+|+.+|+.++||||++++++|......   
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~  119 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF-QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  119 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccc-cchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence            478999999999999999999999999999999997643 3345567788999999999999999999999877655   


Q ss_pred             ---eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          407 ---CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       407 ---~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                         |+||||+. ++|..++.    ..+++..++.++.||+.||.|||++||+||||||+||||+.++++||+|||+++..
T Consensus       120 ~~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~  194 (371)
T 4exu_A          120 YDFYLVMPFMQ-TDLQKIMG----MEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHA  194 (371)
T ss_dssp             CCCEEEEECCC-EEHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC---
T ss_pred             eeEEEEEcccc-ccHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCccccc
Confidence               99999995 68877664    34999999999999999999999999999999999999999999999999998431


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      .                                                                               
T Consensus       195 ~-------------------------------------------------------------------------------  195 (371)
T 4exu_A          195 D-------------------------------------------------------------------------------  195 (371)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-----------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-----------------  625 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-----------------  625 (730)
                      ......+||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+..+.+..++...                 
T Consensus       196 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  275 (371)
T 4exu_A          196 AEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAK  275 (371)
T ss_dssp             ----CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHH
T ss_pred             cCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhh
Confidence            00123478999999999988 678999999999999999999999998876544443332100                 


Q ss_pred             ------ccCC------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          626 ------LRFP------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       626 ------~~~p------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                            ...+      ..+..+.++++||++||..||.+||+    ++|+++||||+.+.+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~f~~~~~~  333 (371)
T 4exu_A          276 SYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLT----AAQALTHPFFEPFRDP  333 (371)
T ss_dssp             HHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCC----HHHHHTSGGGTTTCCG
T ss_pred             hhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCC----HHHHhcCcccccCCCc
Confidence                  0000      01356889999999999999999999    7999999999986544

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=1.4e-46  Score=401.05  Aligned_cols=265  Identities=23%  Similarity=0.314  Sum_probs=214.7

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCC-eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCC------Ccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTR-CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF------LPTLY  397 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~-~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPn------IV~L~  397 (730)
                      .+.+..++|++++.||+|+||+||+|++..++ ..||+|++++..    .....+.+|+.+|+.+.|++      |+.++
T Consensus        13 ~g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~   88 (355)
T 2eu9_A           13 IGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG----KYREAARLEINVLKKIKEKDKENKFLCVLMS   88 (355)
T ss_dssp             TTCEETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEE
T ss_pred             cCceecccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc----cchhHHHHHHHHHHHHhhcCCCCceeEEEee
Confidence            34455689999999999999999999998776 789999997542    33456788999999987665      89999


Q ss_pred             ccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe-----------
Q 004790          398 THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV-----------  466 (730)
Q Consensus       398 ~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl-----------  466 (730)
                      ++|...+.+||||||+ +++|..++.......+++..++.++.||+.||.|||++||+||||||+||||           
T Consensus        89 ~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~  167 (355)
T 2eu9_A           89 DWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNE  167 (355)
T ss_dssp             EEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECC
T ss_pred             eeeeeCCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecccccccccc
Confidence            9999999999999999 6677666665544579999999999999999999999999999999999999           


Q ss_pred             --------cCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCccccccccc
Q 004790          467 --------RDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKK  538 (730)
Q Consensus       467 --------~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~  538 (730)
                              +.++.+||+|||+++...                                                      
T Consensus       168 ~~~~~~~~~~~~~~kl~Dfg~~~~~~------------------------------------------------------  193 (355)
T 2eu9_A          168 HKSCEEKSVKNTSIRVADFGSATFDH------------------------------------------------------  193 (355)
T ss_dssp             C-CCCEEEESCCCEEECCCTTCEETT------------------------------------------------------
T ss_pred             cccccccccCCCcEEEeecCcccccc------------------------------------------------------
Confidence                    567899999999984310                                                      


Q ss_pred             ccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccce
Q 004790          539 KTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL  618 (730)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l  618 (730)
                                               ......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+
T Consensus       194 -------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~  248 (355)
T 2eu9_A          194 -------------------------EHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHL  248 (355)
T ss_dssp             -------------------------SCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred             -------------------------ccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence                                     0011347999999999999999999999999999999999999999876544332


Q ss_pred             eeeeccccc---------------------C---------------------CCCCCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          619 FNVVGQQLR---------------------F---------------------PDSPATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       619 ~~i~~~~~~---------------------~---------------------p~~~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      ..+......                     +                     ......+.++.+||++||..||.+||+ 
T Consensus       249 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt-  327 (355)
T 2eu9_A          249 VMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRIT-  327 (355)
T ss_dssp             HHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCC-
T ss_pred             HHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcC-
Confidence            221110000                     0                     011112347889999999999999999 


Q ss_pred             hhcHHHHHcCCCCCCCCcchh
Q 004790          657 KRGATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       657 ~~~a~elL~HPfF~~v~w~~~  677 (730)
                         ++|+++||||++++|...
T Consensus       328 ---~~e~l~hp~f~~~~~~~~  345 (355)
T 2eu9_A          328 ---LAEALLHPFFAGLTPEER  345 (355)
T ss_dssp             ---HHHHTTSGGGGGCCHHHH
T ss_pred             ---HHHHhcChhhcCCChhhc
Confidence               799999999999998754

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=2.2e-46  Score=411.67  Aligned_cols=261  Identities=26%  Similarity=0.428  Sum_probs=213.4

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC--CCCCccccccccccce
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD--HPFLPTLYTHFETDRF  405 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~--HPnIV~L~~~f~~~~~  405 (730)
                      +...+|++++.||+|+||+||+|.+.. ++.||||++.+... .......+.+|+.+|+.++  ||||+++++++..+..
T Consensus        53 ~~~~~y~~~~~LG~G~fg~Vy~~~~~~-~~~vaiK~~~~~~~-~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~  130 (390)
T 2zmd_A           53 VKGRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQY  130 (390)
T ss_dssp             ETTEEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred             ccCCceEEEEEEccCCCeEEEEEEcCC-CCEEEEEEEecccc-cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCE
Confidence            344679999999999999999999875 88999999976543 3355677899999999996  5999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +||||| +.+++|.+++...  ..+++..++.|+.||+.||.|||++||+||||||+||||+ ++.+||+|||+++.+..
T Consensus       131 ~~lv~E-~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~  206 (390)
T 2zmd_A          131 IYMVME-CGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP  206 (390)
T ss_dssp             EEEEEE-CCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC--
T ss_pred             EEEEEe-cCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccccccC
Confidence            999999 5589999988765  4789999999999999999999999999999999999995 68999999999854210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ..                                                                          ....
T Consensus       207 ~~--------------------------------------------------------------------------~~~~  212 (390)
T 2zmd_A          207 DT--------------------------------------------------------------------------TSVV  212 (390)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CC--------------------------------------------------------------------------cccc
Confidence            00                                                                          0001


Q ss_pred             ccccccCcccCChhhhcc-----------CCCCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeeecccccCCCCCC
Q 004790          566 SMSFVGTHEYLAPEIIKG-----------EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVGQQLRFPDSPA  633 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g-----------~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~~~~~~~p~~~~  633 (730)
                      ....+||+.|+|||++.+           ..++.++|||||||+||||++|+.||.+..+. ..+..++.....++....
T Consensus       213 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  292 (390)
T 2zmd_A          213 KDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDI  292 (390)
T ss_dssp             -CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCCCCCCC
T ss_pred             CCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccCCCCcc
Confidence            123589999999999976           35889999999999999999999999875433 333344444444444445


Q ss_pred             CChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          634 TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       634 ~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      .+.++++||.+||..||.+||+    +.|+++||||+..
T Consensus       293 ~~~~~~~li~~~L~~dP~~Rps----~~ell~hp~~~~~  327 (390)
T 2zmd_A          293 PEKDLQDVLKCCLKRDPKQRIS----IPELLAHPYVQIQ  327 (390)
T ss_dssp             SCHHHHHHHHHHTCSSTTTSCC----HHHHHTSHHHHSC
T ss_pred             chHHHHHHHHHHcccChhhCCC----HHHHhhCcCcccc
Confidence            6889999999999999999999    7999999999854

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=1.3e-46  Score=391.22  Aligned_cols=261  Identities=25%  Similarity=0.308  Sum_probs=203.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|++++.||+|+||+||+|++..+++.||||++..... .......+.++..+++.++||||+++++++.+++..|
T Consensus         4 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~   82 (290)
T 3fme_A            4 VKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN-SQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVW   82 (290)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---C-HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEE
T ss_pred             ccHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccC-cHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEE
Confidence            556889999999999999999999999999999999976532 2233344555666688889999999999999999999


Q ss_pred             EEeeecCCCCccccccc--cCCCCccHHHHHHhHHHHHHHHHHhHhc-ceeecccCCccEEecCCCceEEeccccccccc
Q 004790          408 LVMEYCPGGDLHTLRQR--QPGKHFSEYAARFYAAEVLLALEYLHML-GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~--~~~~~lse~~a~~~~~qIl~AL~yLH~~-gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      +||||++ |+|..++..  .....+++..++.++.||+.||.|||++ ||+||||||+|||++.++++||+|||++....
T Consensus        83 lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  161 (290)
T 3fme_A           83 ICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV  161 (290)
T ss_dssp             EEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred             EEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence            9999996 577666543  2346799999999999999999999998 99999999999999999999999999984321


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                             .
T Consensus       162 ~~-----------------------------------------------------------------------------~  164 (290)
T 3fme_A          162 DD-----------------------------------------------------------------------------V  164 (290)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc-----------------------------------------------------------------------------c
Confidence            00                                                                             0


Q ss_pred             cccccccCcccCChhhh----ccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeeecccccCCCCCCCChhHH
Q 004790          565 RSMSFVGTHEYLAPEII----KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVGQQLRFPDSPATSYASR  639 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl----~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~~~~~~~p~~~~~s~~~~  639 (730)
                      ......||+.|+|||++    .+..++.++|||||||++|+|++|+.||...... ..+..++...........++.+++
T Consensus       165 ~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (290)
T 3fme_A          165 AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFV  244 (290)
T ss_dssp             -----CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCCCTTTSCHHHH
T ss_pred             cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCcccccCCHHHH
Confidence            01123689999999997    4556899999999999999999999999864332 222233333222223346789999


Q ss_pred             HHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          640 DLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      +||.+||..||++||+    +.++++||||+.
T Consensus       245 ~li~~~l~~~p~~Rpt----~~e~l~hp~f~~  272 (290)
T 3fme_A          245 DFTSQCLKKNSKERPT----YPELMQHPFFTL  272 (290)
T ss_dssp             HHHHHHTCSSGGGSCC----HHHHTTSHHHHH
T ss_pred             HHHHHHhhcChhhCcC----HHHHHhCccccc
Confidence            9999999999999999    799999999975

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=3.9e-47  Score=405.73  Aligned_cols=264  Identities=26%  Similarity=0.379  Sum_probs=217.8

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      .+++|++++.||+|+||.||+|++..+++.||||++..... .......+.+|+.+|+.++||||+++++++.+.+.+|+
T Consensus        23 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  101 (331)
T 4aaa_A           23 SMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDD-DKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYL  101 (331)
T ss_dssp             CGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCC-chHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEE
Confidence            45789999999999999999999999999999999865532 33445667899999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||+++++|..++...  ..+++..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||++......  
T Consensus       102 v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--  177 (331)
T 4aaa_A          102 VFEFVDHTILDDLELFP--NGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP--  177 (331)
T ss_dssp             EEECCSEEHHHHHHHST--TCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred             EEecCCcchHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecCC--
Confidence            99999999998876544  46999999999999999999999999999999999999999999999999998432100  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                ......
T Consensus       178 --------------------------------------------------------------------------~~~~~~  183 (331)
T 4aaa_A          178 --------------------------------------------------------------------------GEVYDD  183 (331)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------ccccCC
Confidence                                                                                      000112


Q ss_pred             cccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-------------------cccC
Q 004790          569 FVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-------------------QLRF  628 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-------------------~~~~  628 (730)
                      .+||+.|+|||++.+. .++.++|||||||++|+|++|+.||.+......+..+...                   ....
T Consensus       184 ~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (331)
T 4aaa_A          184 EVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRL  263 (331)
T ss_dssp             CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCC
T ss_pred             CcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccC
Confidence            4789999999999886 6899999999999999999999999887654444332210                   0111


Q ss_pred             CC----------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          629 PD----------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       629 p~----------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      +.          .+.++.++.+||.+||..||.+||+    ++|+++||||+..+|.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt----~~ell~hp~f~~~~~~  316 (331)
T 4aaa_A          264 PEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPF----CAELLHHDFFQMDGFA  316 (331)
T ss_dssp             CCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCC----GGGGGGSHHHHGGGHH
T ss_pred             ccccccchhhhcccchhHHHHHHHHHHhccCcccCCC----HHHHhcCchhccCChh
Confidence            11          1356889999999999999999999    6899999999987665

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=6.8e-46  Score=397.66  Aligned_cols=271  Identities=26%  Similarity=0.372  Sum_probs=213.9

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc-----
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD-----  403 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~-----  403 (730)
                      ..++|++++.||+|+||.||+|++..+++.||||++....  .......+.+|+++|+.++||||+++++++..+     
T Consensus         9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   86 (353)
T 2b9h_A            9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD--KPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENF   86 (353)
T ss_dssp             SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTC
T ss_pred             cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc--cchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCcc
Confidence            3578999999999999999999999999999999996432  234455678999999999999999999887654     


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ..+|+||||+. ++|..++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...
T Consensus        87 ~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~  162 (353)
T 2b9h_A           87 NEVYIIQELMQ-TDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARII  162 (353)
T ss_dssp             CCEEEEECCCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             ceEEEEEeccC-ccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEeccccccc
Confidence            78999999995 689887765   36999999999999999999999999999999999999999999999999999653


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      .........                                                                  .....
T Consensus       163 ~~~~~~~~~------------------------------------------------------------------~~~~~  176 (353)
T 2b9h_A          163 DESAADNSE------------------------------------------------------------------PTGQQ  176 (353)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             ccccccccC------------------------------------------------------------------ccccc
Confidence            211000000                                                                  00000


Q ss_pred             ccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-------------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-------------------  623 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-------------------  623 (730)
                      .....++||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.+....+..+..                   
T Consensus       177 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (353)
T 2b9h_A          177 SGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRA  256 (353)
T ss_dssp             ---CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHH
T ss_pred             cchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchh
Confidence            11234689999999999875 6689999999999999999999999988654332222110                   


Q ss_pred             -----ccccCCC------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          624 -----QQLRFPD------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       624 -----~~~~~p~------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                           ....++.      .+.++.++++||.+||..||.+||+    ++++++||||+.+.|.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~~~~~~~~  315 (353)
T 2b9h_A          257 REYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRIT----AKEALEHPYLQTYHDP  315 (353)
T ss_dssp             HHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGTTTCCT
T ss_pred             hHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCC----HHHHhcCccccccCCc
Confidence                 0000110      1357889999999999999999999    7999999999987654

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=2.5e-46  Score=397.47  Aligned_cols=261  Identities=31%  Similarity=0.501  Sum_probs=211.9

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh-----hHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA-----SRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~-----~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      ++|++++.||+|+||.||+|++..+++.||||++.+....     .......+.+|+++|+.++||||+++++++..+. 
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-   88 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED-   88 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-
T ss_pred             hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-
Confidence            5799999999999999999999999999999999765432     1223345789999999999999999999997665 


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc---eEEeccccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH---IMLSDFDLSLR  482 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~---vKL~DFGlA~~  482 (730)
                      +|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.   +||+|||++..
T Consensus        89 ~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~  166 (322)
T 2ycf_A           89 YYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKI  166 (322)
T ss_dssp             EEEEEECCTTEETHHHHSTT--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEE
T ss_pred             eEEEEecCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCcccee
Confidence            89999999999999877654  57999999999999999999999999999999999999987664   99999999853


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ...                                                                             
T Consensus       167 ~~~-----------------------------------------------------------------------------  169 (322)
T 2ycf_A          167 LGE-----------------------------------------------------------------------------  169 (322)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            210                                                                             


Q ss_pred             cccccccccCcccCChhhhc---cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeee-ecccccCCC--CCCCCh
Q 004790          563 AARSMSFVGTHEYLAPEIIK---GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV-VGQQLRFPD--SPATSY  636 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~---g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i-~~~~~~~p~--~~~~s~  636 (730)
                      .......+||+.|+|||++.   ...++.++|||||||++|+|++|+.||.+......+... ......+..  ...++.
T Consensus       170 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (322)
T 2ycf_A          170 TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSE  249 (322)
T ss_dssp             CHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCCCCHHHHTTSCH
T ss_pred             ccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCccccCchhhhhcCH
Confidence            00112357999999999985   456889999999999999999999999876554333332 222222211  245788


Q ss_pred             hHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          637 ASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       637 ~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      ++.+||.+||..||.+||+    ++++++||||++.+|.
T Consensus       250 ~~~~li~~~l~~dP~~Rps----~~~~l~h~~~~~~~~~  284 (322)
T 2ycf_A          250 KALDLVKKLLVVDPKARFT----TEEALRHPWLQDEDMK  284 (322)
T ss_dssp             HHHHHHHHHSCSSTTTSCC----HHHHHTSGGGCCHHHH
T ss_pred             HHHHHHHHHcccCHhhCCC----HHHHhhCcCcCCHHHH
Confidence            9999999999999999999    7999999999998775

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=5e-46  Score=384.32  Aligned_cols=254  Identities=19%  Similarity=0.293  Sum_probs=208.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~L  408 (730)
                      .++|++++.||+|+||+||+|++..+++.||||++.+..... .....+.+|+.++..+ +||||++++++|.+++.+|+
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l   88 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGS-VDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI   88 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTS-HHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEeccccccc-HHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence            367999999999999999999999999999999997653333 3345678899999988 99999999999999999999


Q ss_pred             EeeecCCCCccccccccC--CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC-----------------
Q 004790          409 VMEYCPGGDLHTLRQRQP--GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD-----------------  469 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~--~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~-----------------  469 (730)
                      ||||++|++|.+++....  ...+++..++.++.||+.||.|||++||+||||||+|||++.+                 
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~  168 (289)
T 1x8b_A           89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWAS  168 (289)
T ss_dssp             EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-------------------
T ss_pred             EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccC
Confidence            999999999999887542  2468999999999999999999999999999999999999844                 


Q ss_pred             --CceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccC
Q 004790          470 --GHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSEL  547 (730)
Q Consensus       470 --g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (730)
                        +.+||+|||++.....                                                              
T Consensus       169 ~~~~~kl~Dfg~~~~~~~--------------------------------------------------------------  186 (289)
T 1x8b_A          169 NKVMFKIGDLGHVTRISS--------------------------------------------------------------  186 (289)
T ss_dssp             -CCCEEECCCTTCEETTC--------------------------------------------------------------
T ss_pred             CceEEEEcccccccccCC--------------------------------------------------------------
Confidence              4799999998843210                                                              


Q ss_pred             CCCCCCCcccccccccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc
Q 004790          548 GLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL  626 (730)
Q Consensus       548 ~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~  626 (730)
                                        .....||+.|+|||++.+. .++.++|||||||++|+|++|.++|....   ....+.....
T Consensus       187 ------------------~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~---~~~~~~~~~~  245 (289)
T 1x8b_A          187 ------------------PQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD---QWHEIRQGRL  245 (289)
T ss_dssp             ------------------SCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH---HHHHHHTTCC
T ss_pred             ------------------ccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh---HHHHHHcCCC
Confidence                              0113589999999999876 56789999999999999999998875432   2222222222


Q ss_pred             cCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       627 ~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                       ......++.++++||.+||..||.+||+    +.++++||||...
T Consensus       246 -~~~~~~~~~~~~~li~~~l~~dp~~Rps----~~~ll~h~~~~~~  286 (289)
T 1x8b_A          246 -PRIPQVLSQEFTELLKVMIHPDPERRPS----AMALVKHSVLLSA  286 (289)
T ss_dssp             -CCCSSCCCHHHHHHHHHHTCSSGGGSCC----HHHHHTCTTC---
T ss_pred             -CCCCcccCHHHHHHHHHHhCCCcccCCC----HHHHhhChHhhhh
Confidence             1223467899999999999999999999    7999999999863

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=2.6e-46  Score=391.81  Aligned_cols=265  Identities=27%  Similarity=0.430  Sum_probs=217.4

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ...++|++++.||+|+||.||+|++..+++.||+|++.....   .....+.+|+++|+.++||||+++++++.+++.+|
T Consensus        16 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   92 (302)
T 2j7t_A           16 DPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSE---EELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLW   92 (302)
T ss_dssp             CGGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEE
T ss_pred             CCccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCH---HHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEE
Confidence            445789999999999999999999999999999999876432   23456788999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+++++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....  
T Consensus        93 lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~--  169 (302)
T 2j7t_A           93 IMIEFCPGGAVDAIMLEL-DRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLK--  169 (302)
T ss_dssp             EEEECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHH--
T ss_pred             EEEEeCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCccccc--
Confidence            999999999999877653 24699999999999999999999999999999999999999999999999998743100  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                ......
T Consensus       170 --------------------------------------------------------------------------~~~~~~  175 (302)
T 2j7t_A          170 --------------------------------------------------------------------------TLQKRD  175 (302)
T ss_dssp             --------------------------------------------------------------------------HHHC--
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      000112


Q ss_pred             ccccCcccCChhhhc-----cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-cCCCCCCCChhHHHH
Q 004790          568 SFVGTHEYLAPEIIK-----GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-RFPDSPATSYASRDL  641 (730)
Q Consensus       568 s~vGT~~Y~APEvl~-----g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-~~p~~~~~s~~~~dL  641 (730)
                      ..+||+.|+|||++.     +..++.++|||||||++|+|++|+.||...+....+..+..... .......++.++++|
T Consensus       176 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  255 (302)
T 2j7t_A          176 SFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDF  255 (302)
T ss_dssp             ---CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHH
T ss_pred             cccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCccccCHHHHHH
Confidence            357999999999994     66789999999999999999999999988765544444433222 122234568899999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                      |.+||..||.+||+    +.++++||||+.+.|..
T Consensus       256 i~~~l~~dp~~Rps----~~~ll~h~~~~~~~~~~  286 (302)
T 2j7t_A          256 LKIALDKNPETRPS----AAQLLEHPFVSSITSNK  286 (302)
T ss_dssp             HHHHSCSCTTTSCC----HHHHTTSTTTTTCCCCH
T ss_pred             HHHHcccChhhCCC----HHHHhcChHHhhhccch
Confidence            99999999999999    79999999999988753

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=4.5e-46  Score=394.79  Aligned_cols=278  Identities=21%  Similarity=0.307  Sum_probs=204.8

Q ss_pred             cCCccccCCeEEEeEEccCCcEEEEEEEECCCCe---EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 004790          324 RDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRC---YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF  400 (730)
Q Consensus       324 ~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~---~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f  400 (730)
                      ....+..++|++++.||+|+||+||+|++..++.   .||||++....... ...+.+.+|+++++.++||||+++++++
T Consensus        16 ~~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~   94 (323)
T 3qup_A           16 EDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIAS-SDIEEFLREAACMKEFDHPHVAKLVGVS   94 (323)
T ss_dssp             CTTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------C-HHHHHHHHHHHHHTTCCCTTBCCCCEEE
T ss_pred             hhcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCH-HHHHHHHHHHHHHHHCCCCceehhhcee
Confidence            3445677899999999999999999999887765   79999997654333 4457789999999999999999999999


Q ss_pred             ccccee------eEEeeecCCCCccccccccC----CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC
Q 004790          401 ETDRFS------CLVMEYCPGGDLHTLRQRQP----GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG  470 (730)
Q Consensus       401 ~~~~~l------~LVmEy~~GGsL~~ll~~~~----~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g  470 (730)
                      ......      |+||||+.+|+|..++....    ...+++..++.++.||+.||.|||++||+||||||+||||+.++
T Consensus        95 ~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~  174 (323)
T 3qup_A           95 LRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDM  174 (323)
T ss_dssp             ECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTS
T ss_pred             eccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCC
Confidence            876655      99999999999998876432    12589999999999999999999999999999999999999999


Q ss_pred             ceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCC
Q 004790          471 HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLP  550 (730)
Q Consensus       471 ~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (730)
                      .+||+|||+++.......                                                              
T Consensus       175 ~~kl~Dfg~a~~~~~~~~--------------------------------------------------------------  192 (323)
T 3qup_A          175 TVCVADFGLSRKIYSGDY--------------------------------------------------------------  192 (323)
T ss_dssp             CEEECCCCC-----------------------------------------------------------------------
T ss_pred             CEEEeecccccccccccc--------------------------------------------------------------
Confidence            999999999854211000                                                              


Q ss_pred             CCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCC
Q 004790          551 SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFP  629 (730)
Q Consensus       551 ~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p  629 (730)
                                  ........||+.|+|||++.+..++.++|||||||++|||++ |+.||.+......+..+.... ..+
T Consensus       193 ------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~-~~~  259 (323)
T 3qup_A          193 ------------YRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGN-RLK  259 (323)
T ss_dssp             --------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC-CCC
T ss_pred             ------------ccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCC-CCC
Confidence                        000112357889999999999999999999999999999999 999999877665554444332 334


Q ss_pred             CCCCCChhHHHHHHhhhcCCCCCcCCch---hcHHHHHcCCCCCCCCcchh
Q 004790          630 DSPATSYASRDLIRGLLVKEPQHRLGVK---RGATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       630 ~~~~~s~~~~dLI~~lL~~DP~~R~t~~---~~a~elL~HPfF~~v~w~~~  677 (730)
                      ....++.++++||.+||..||.+||++.   ..++++++|||+....+..+
T Consensus       260 ~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~~~~pl  310 (323)
T 3qup_A          260 QPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLSTSQDPL  310 (323)
T ss_dssp             CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-----------
T ss_pred             CCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcCCCCCCC
Confidence            4467889999999999999999999964   44688999999987655443

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=2.8e-45  Score=394.76  Aligned_cols=257  Identities=29%  Similarity=0.399  Sum_probs=212.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF----  405 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~----  405 (730)
                      .++|.+.+.||+|+||.||+|+++.+++.||||++.+.. ........+.+|+.+|+.++||||++++++|.....    
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  101 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF-QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  101 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccc-cchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccc
Confidence            478999999999999999999999999999999997643 334456678899999999999999999999987654    


Q ss_pred             --eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          406 --SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       406 --l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                        +|+||||+. ++|..++..    .+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||++...
T Consensus       102 ~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~  176 (353)
T 3coi_A          102 YDFYLVMPFMQ-TDLQKIMGL----KFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHA  176 (353)
T ss_dssp             CCCEEEEECCS-EEGGGTTTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC-
T ss_pred             eeEEEEecccc-CCHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCC
Confidence              499999995 688877643    4999999999999999999999999999999999999999999999999998421


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                              
T Consensus       177 ~~------------------------------------------------------------------------------  178 (353)
T 3coi_A          177 DA------------------------------------------------------------------------------  178 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc------------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ------------------  624 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~------------------  624 (730)
                       .....+||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+..+.+..+...                  
T Consensus       179 -~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  257 (353)
T 3coi_A          179 -EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAK  257 (353)
T ss_dssp             ------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHH
T ss_pred             -CccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHH
Confidence             0113478999999999987 67899999999999999999999999986644333322210                  


Q ss_pred             ----------cccCC-CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          625 ----------QLRFP-DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       625 ----------~~~~p-~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                                ...++ .....+.++++||.+||..||++||+    ++++++||||+.+.+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt----~~e~l~hp~f~~~~~~  315 (353)
T 3coi_A          258 SYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLT----AAQALTHPFFEPFRDP  315 (353)
T ss_dssp             HHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCC----HHHHHTSGGGTTTCCG
T ss_pred             HHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCC----HHHHhcCcchhhccCc
Confidence                      00011 12356889999999999999999999    7999999999976543

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.1e-45  Score=403.07  Aligned_cols=258  Identities=19%  Similarity=0.291  Sum_probs=212.8

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEEC-------CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELS-------STRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYT  398 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~-------~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~  398 (730)
                      .+..++|++++.||+|+||+||+|++.       .++..||||+++...  .......+.+|+++|+.+ +||||+++++
T Consensus        77 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpnIv~~~~  154 (370)
T 2psq_A           77 EFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLG  154 (370)
T ss_dssp             BCCGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC--BHHHHHHHHHHHHHHHHSCCCTTBCCEEE
T ss_pred             cccHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc--CHHHHHHHHHHHHHHHHhcCCCCEeeEEE
Confidence            355689999999999999999999874       345679999997653  335567789999999999 8999999999


Q ss_pred             cccccceeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccE
Q 004790          399 HFETDRFSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENV  464 (730)
Q Consensus       399 ~f~~~~~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNI  464 (730)
                      +|.+++.+|+||||++||+|.+++....              ...+++..++.++.||+.||+|||++|||||||||+||
T Consensus       155 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NI  234 (370)
T 2psq_A          155 ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNV  234 (370)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGE
T ss_pred             EEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhE
Confidence            9999999999999999999999887542              23588999999999999999999999999999999999


Q ss_pred             EecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          465 LVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       465 Ll~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                      ||+.+|++||+|||+++.......                                                        
T Consensus       235 ll~~~~~~kl~DFG~a~~~~~~~~--------------------------------------------------------  258 (370)
T 2psq_A          235 LVTENNVMKIADFGLARDINNIDY--------------------------------------------------------  258 (370)
T ss_dssp             EECTTCCEEECCCSSCEETTCCCT--------------------------------------------------------
T ss_pred             EECCCCCEEEccccCCcccCcccc--------------------------------------------------------
Confidence            999999999999999854211000                                                        


Q ss_pred             ccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeec
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVG  623 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~  623 (730)
                                        ........||+.|+|||++.+..++.++|||||||++|||++ |+.||.+......+.. +.
T Consensus       259 ------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~~-~~  319 (370)
T 2psq_A          259 ------------------YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL-LK  319 (370)
T ss_dssp             ------------------TCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHH-HH
T ss_pred             ------------------eecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHH-Hh
Confidence                              001112367899999999999999999999999999999998 9999998765444433 33


Q ss_pred             ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       624 ~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .....+....++.++.+||.+||..||.+||++    .|+++
T Consensus       320 ~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~----~ell~  357 (370)
T 2psq_A          320 EGHRMDKPANCTNELYMMMRDCWHAVPSQRPTF----KQLVE  357 (370)
T ss_dssp             TTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCH----HHHHH
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCH----HHHHH
Confidence            333334445788999999999999999999995    55554

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=1.3e-46  Score=393.09  Aligned_cols=272  Identities=25%  Similarity=0.365  Sum_probs=197.5

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .+..++|++++.||+|+||.||+|++..+++.||||++.....  ......+.+|+.+|+.++||||+++++++..++..
T Consensus        11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   88 (303)
T 2vwi_A           11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKC--QTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDEL   88 (303)
T ss_dssp             --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC------------------CCCCCCCTTBCCEEEEEESSSCE
T ss_pred             ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhc--chhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCc
Confidence            3567899999999999999999999999999999999875432  23455678999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccc------cCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          407 CLVMEYCPGGDLHTLRQR------QPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~------~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      |+||||++|++|.+++..      .....+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  168 (303)
T 2vwi_A           89 WLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVS  168 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred             EEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence            999999999999988764      12356899999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ..........                                                                      
T Consensus       169 ~~~~~~~~~~----------------------------------------------------------------------  178 (303)
T 2vwi_A          169 AFLATGGDIT----------------------------------------------------------------------  178 (303)
T ss_dssp             HHCC----------------------------------------------------------------------------
T ss_pred             heeccCCCcc----------------------------------------------------------------------
Confidence            5432100000                                                                      


Q ss_pred             cccccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccccc--------CCCC
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR--------FPDS  631 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~--------~p~~  631 (730)
                       ........+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+......+.........        ....
T Consensus       179 -~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (303)
T 2vwi_A          179 -RNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEML  257 (303)
T ss_dssp             ----------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCC
T ss_pred             -chhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhh
Confidence             0001123579999999999976 56899999999999999999999999876554443322221111        1112


Q ss_pred             CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          632 PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       632 ~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      ..++.++++||.+||..||.+||+    +.++++||||+...+.
T Consensus       258 ~~~~~~~~~li~~~l~~dp~~Rps----~~~ll~h~~~~~~~~~  297 (303)
T 2vwi_A          258 KKYGKSFRKMISLCLQKDPEKRPT----AAELLRHKFFQKAKNK  297 (303)
T ss_dssp             CCCCHHHHHHHHHHCCSSGGGSCC----HHHHHTSTTC------
T ss_pred             hhhhHHHHHHHHHHccCChhhCcC----HHHHhhChhhhcCCCC
Confidence            456889999999999999999999    7999999999987654

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=4.4e-46  Score=406.49  Aligned_cols=262  Identities=26%  Similarity=0.391  Sum_probs=211.1

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CC-----CCccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HP-----FLPTLYT  398 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HP-----nIV~L~~  398 (730)
                      .+....++|++++.||+|+||+||+|++..+++.||||+++...    .....+.+|+.+++.++ |+     +|+++++
T Consensus        48 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~  123 (382)
T 2vx3_A           48 NGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK----AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKR  123 (382)
T ss_dssp             TTCEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH----HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEE
T ss_pred             cCCEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH----HHHHHHHHHHHHHHHHHhcccccceeEEEeee
Confidence            44455789999999999999999999999999999999997542    34456778999998884 55     4999999


Q ss_pred             cccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhH--hcceeecccCCccEEec--CCCceEE
Q 004790          399 HFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH--MLGVVYRDLKPENVLVR--DDGHIML  474 (730)
Q Consensus       399 ~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH--~~gIVHRDLKPeNILl~--~~g~vKL  474 (730)
                      +|...+.+||||||+. ++|.+++.......+++..++.++.||+.||.|||  +.|||||||||+||||+  .++.+||
T Consensus       124 ~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL  202 (382)
T 2vx3_A          124 HFMFRNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKI  202 (382)
T ss_dssp             EEEETTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEE
T ss_pred             eeccCCceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEE
Confidence            9999999999999995 59999888765567999999999999999999999  57999999999999995  4788999


Q ss_pred             ecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCC
Q 004790          475 SDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTL  554 (730)
Q Consensus       475 ~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (730)
                      +|||+++....                                                                     
T Consensus       203 ~DFG~a~~~~~---------------------------------------------------------------------  213 (382)
T 2vx3_A          203 VDFGSSCQLGQ---------------------------------------------------------------------  213 (382)
T ss_dssp             CCCTTCEETTC---------------------------------------------------------------------
T ss_pred             EeccCceeccc---------------------------------------------------------------------
Confidence            99999853210                                                                     


Q ss_pred             cccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc--------
Q 004790          555 PELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL--------  626 (730)
Q Consensus       555 ~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~--------  626 (730)
                                .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+..+.+..++....        
T Consensus       214 ----------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  283 (382)
T 2vx3_A          214 ----------RIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILD  283 (382)
T ss_dssp             ----------CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHT
T ss_pred             ----------ccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence                      01135799999999999999999999999999999999999999998765444333221100        


Q ss_pred             -----------------------------cCCCCCC-------------------------CChhHHHHHHhhhcCCCCC
Q 004790          627 -----------------------------RFPDSPA-------------------------TSYASRDLIRGLLVKEPQH  652 (730)
Q Consensus       627 -----------------------------~~p~~~~-------------------------~s~~~~dLI~~lL~~DP~~  652 (730)
                                                   ..+....                         .+.++++||++||.+||++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~  363 (382)
T 2vx3_A          284 QAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKT  363 (382)
T ss_dssp             TCTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTT
T ss_pred             hhHHHHHHHHhccccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhh
Confidence                                         0000000                         0136899999999999999


Q ss_pred             cCCchhcHHHHHcCCCCCCCCc
Q 004790          653 RLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       653 R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      |||    ++|+|+||||+...|
T Consensus       364 Rpt----a~e~L~hp~f~~~~~  381 (382)
T 2vx3_A          364 RIQ----PYYALQHSFFKKTAD  381 (382)
T ss_dssp             SCC----HHHHTTSGGGCC---
T ss_pred             CCC----HHHHhcCcccccCCC
Confidence            999    799999999997543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.3e-45  Score=392.22  Aligned_cols=258  Identities=24%  Similarity=0.318  Sum_probs=209.3

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      ...+..++|++++.||+|+||+||+|++  +++.||||++.+.... ......+.+|+++|+.++||||++++++|.+..
T Consensus        31 ~~~i~~~~y~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~  107 (309)
T 3p86_A           31 DMDIPWCDLNIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFH-AERVNEFLREVAIMKRLRHPNIVLFMGAVTQPP  107 (309)
T ss_dssp             -CBCCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT
T ss_pred             cccCChhHceeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC
Confidence            3456678999999999999999999987  4678999999765433 345677889999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCC-CCccHHHHHHhHHHHHHHHHHhHhcc--eeecccCCccEEecCCCceEEecccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPG-KHFSEYAARFYAAEVLLALEYLHMLG--VVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~-~~lse~~a~~~~~qIl~AL~yLH~~g--IVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      .+|+||||++||+|.+++..... ..+++..++.++.||+.||+|||++|  |+||||||+|||++.++.+||+|||+++
T Consensus       108 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~  187 (309)
T 3p86_A          108 NLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSR  187 (309)
T ss_dssp             CCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC---
T ss_pred             ceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCc
Confidence            99999999999999998876421 23899999999999999999999999  9999999999999999999999999984


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      ....                                                                            
T Consensus       188 ~~~~----------------------------------------------------------------------------  191 (309)
T 3p86_A          188 LKAS----------------------------------------------------------------------------  191 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            3110                                                                            


Q ss_pred             ccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHH
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      ........+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+.......+.......+....++.++.+|
T Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  271 (309)
T 3p86_A          192 TFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAI  271 (309)
T ss_dssp             ----------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHH
T ss_pred             cccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHH
Confidence            00011235799999999999999999999999999999999999999988765555444433333344445789999999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHc
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      |.+||..||.+||+    ++++++
T Consensus       272 i~~~l~~dP~~Rps----~~~ll~  291 (309)
T 3p86_A          272 IEGCWTNEPWKRPS----FATIMD  291 (309)
T ss_dssp             HHHHTCSSGGGSCC----HHHHHH
T ss_pred             HHHHccCChhhCcC----HHHHHH
Confidence            99999999999999    466654

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=7.7e-46  Score=398.17  Aligned_cols=261  Identities=21%  Similarity=0.295  Sum_probs=216.1

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEE-----ECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSE-----LSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTH  399 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~-----~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~  399 (730)
                      +.+..++|++++.||+|+||.||+|+     ...+++.||||++++..  .......+.+|+++|+.+ +||||++++++
T Consensus        17 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpniv~~~~~   94 (359)
T 3vhe_A           17 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNLLGA   94 (359)
T ss_dssp             HBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC--CHHHHHHHHHHHHHHHhhcCCcceeeeeee
Confidence            34667899999999999999999999     55677899999997643  234456789999999999 89999999999


Q ss_pred             ccccc-eeeEEeeecCCCCccccccccCC---------------------------------------------------
Q 004790          400 FETDR-FSCLVMEYCPGGDLHTLRQRQPG---------------------------------------------------  427 (730)
Q Consensus       400 f~~~~-~l~LVmEy~~GGsL~~ll~~~~~---------------------------------------------------  427 (730)
                      +.+.+ .+|+|||||+||+|.+++.....                                                   
T Consensus        95 ~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (359)
T 3vhe_A           95 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLS  174 (359)
T ss_dssp             ECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC---------------------------------------------
T ss_pred             eecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccc
Confidence            87754 59999999999999998876432                                                   


Q ss_pred             -------------CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCC
Q 004790          428 -------------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS  494 (730)
Q Consensus       428 -------------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~  494 (730)
                                   ..+++..++.++.||+.||.|||++||+||||||+||||+.++++||+|||++.......       
T Consensus       175 ~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~-------  247 (359)
T 3vhe_A          175 DVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP-------  247 (359)
T ss_dssp             ---------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCT-------
T ss_pred             hhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeecccc-------
Confidence                         128999999999999999999999999999999999999999999999999985321000       


Q ss_pred             CCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcc
Q 004790          495 LDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHE  574 (730)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~  574 (730)
                                                                                         .........||+.
T Consensus       248 -------------------------------------------------------------------~~~~~~~~~~t~~  260 (359)
T 3vhe_A          248 -------------------------------------------------------------------DYVRKGDARLPLK  260 (359)
T ss_dssp             -------------------------------------------------------------------TCEEC--CEECGG
T ss_pred             -------------------------------------------------------------------cchhccccCCCce
Confidence                                                                               0001123478999


Q ss_pred             cCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCc
Q 004790          575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR  653 (730)
Q Consensus       575 Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R  653 (730)
                      |+|||++.+..++.++|||||||++|||++ |+.||.+......+...+......+....++.++.+||.+||..||.+|
T Consensus       261 y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R  340 (359)
T 3vhe_A          261 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQR  340 (359)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             eEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhC
Confidence            999999999999999999999999999998 9999998776666555555544555556789999999999999999999


Q ss_pred             CCchhcHHHHHcC
Q 004790          654 LGVKRGATEIKQH  666 (730)
Q Consensus       654 ~t~~~~a~elL~H  666 (730)
                      |+    +.++++|
T Consensus       341 ps----~~ell~~  349 (359)
T 3vhe_A          341 PT----FSELVEH  349 (359)
T ss_dssp             CC----HHHHHHH
T ss_pred             CC----HHHHHHH
Confidence            99    5677654

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=8.4e-46  Score=392.12  Aligned_cols=263  Identities=25%  Similarity=0.360  Sum_probs=214.4

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEEC-CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc---CCCCCcccccccc----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELS-STRCYFAMKVMDKASLASRKKLTRAQTEREILQLL---DHPFLPTLYTHFE----  401 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~-~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L---~HPnIV~L~~~f~----  401 (730)
                      .++|++++.||+|+||.||+|++. .+++.||+|++....... .....+.+|+.+++.+   +||||+++++++.    
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A           10 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT-SCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             hhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccc-cCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            478999999999999999999995 678899999997543221 1112355677777766   8999999999987    


Q ss_pred             -ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          402 -TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       402 -~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                       ....+|+||||+. |+|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++
T Consensus        89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~  167 (326)
T 1blx_A           89 DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA  167 (326)
T ss_dssp             SSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred             CCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCccc
Confidence             6778999999996 69999888765566999999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      .....                                                                           
T Consensus       168 ~~~~~---------------------------------------------------------------------------  172 (326)
T 1blx_A          168 RIYSF---------------------------------------------------------------------------  172 (326)
T ss_dssp             CCCCG---------------------------------------------------------------------------
T ss_pred             ccccC---------------------------------------------------------------------------
Confidence            43110                                                                           


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-----ccC-------
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-----LRF-------  628 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-----~~~-------  628 (730)
                        ........||+.|+|||++.+..++.++|||||||++|+|++|+.||.+......+..++...     ..+       
T Consensus       173 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  250 (326)
T 1blx_A          173 --QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALP  250 (326)
T ss_dssp             --GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSC
T ss_pred             --CCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccc
Confidence              001123578999999999999999999999999999999999999998876544443332100     000       


Q ss_pred             -------------CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          629 -------------PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       629 -------------p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                                   .....++..+++||.+||..||.+||+    +.++++||||++++|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~e~l~hp~~~~~~~~  306 (326)
T 1blx_A          251 RQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRIS----AYSALSHPYFQDLERC  306 (326)
T ss_dssp             GGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCC----HHHHHTSGGGTTCCCC
T ss_pred             hhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCC----HHHHhcCccccccchh
Confidence                         012457889999999999999999999    7999999999998765

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=9.2e-46  Score=392.66  Aligned_cols=258  Identities=22%  Similarity=0.352  Sum_probs=207.5

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc--e
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR--F  405 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~--~  405 (730)
                      +..++|++++.||+|+||+||+|++..+++.||||++.......  ....+.+|+++|+.++||||+++++++....  .
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   83 (319)
T 4euu_A            6 TSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLR--PVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRH   83 (319)
T ss_dssp             CSSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGS--CHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCC
T ss_pred             CCCCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccc--hHHHHHHHHHHHHhcCCCCcceEEEEeecCCCce
Confidence            34578999999999999999999999999999999997654332  2455678999999999999999999987654  7


Q ss_pred             eeEEeeecCCCCccccccccCC-CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe----cCCCceEEeccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPG-KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV----RDDGHIMLSDFDLS  480 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~-~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl----~~~g~vKL~DFGlA  480 (730)
                      +||||||++|++|.+++..... ..+++..++.++.||+.||.|||++||+||||||+||||    +.++.+||+|||++
T Consensus        84 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a  163 (319)
T 4euu_A           84 KVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA  163 (319)
T ss_dssp             EEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTC
T ss_pred             EEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCc
Confidence            8999999999999998876432 239999999999999999999999999999999999999    78889999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +.....                                                                          
T Consensus       164 ~~~~~~--------------------------------------------------------------------------  169 (319)
T 4euu_A          164 RELEDD--------------------------------------------------------------------------  169 (319)
T ss_dssp             EECCTT--------------------------------------------------------------------------
T ss_pred             eecCCC--------------------------------------------------------------------------
Confidence            542100                                                                          


Q ss_pred             cccccccccccCcccCChhhhc--------cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccce----eeeecccc--
Q 004790          561 PTAARSMSFVGTHEYLAPEIIK--------GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL----FNVVGQQL--  626 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~--------g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l----~~i~~~~~--  626 (730)
                         ....+.+||+.|+|||++.        +..++.++|||||||++|||++|+.||.........    .+++.+..  
T Consensus       170 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~  246 (319)
T 4euu_A          170 ---EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSG  246 (319)
T ss_dssp             ---CCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTT
T ss_pred             ---CceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcc
Confidence               0112347999999999997        567899999999999999999999999764432222    12221111  


Q ss_pred             -----------------cCCCC----CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCC
Q 004790          627 -----------------RFPDS----PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF  668 (730)
Q Consensus       627 -----------------~~p~~----~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPf  668 (730)
                                       .++..    ...+..+.+||++||.+||++||+    ++|+++||=
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s----~~ell~h~~  305 (319)
T 4euu_A          247 AISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWG----FDQFFAETS  305 (319)
T ss_dssp             CCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCC----HHHHHHHHH
T ss_pred             cchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhcc----HHHhhhccH
Confidence                             11211    123457789999999999999999    789999873

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=5.8e-46  Score=390.64  Aligned_cols=264  Identities=25%  Similarity=0.361  Sum_probs=208.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc------
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE------  401 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~------  401 (730)
                      ...++|++++.||+|+||.||+|++..+++.||||++....   ....+.+.+|+++|+.++||||+++++++.      
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (320)
T 2i6l_A            8 DLGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTD---PQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQL   84 (320)
T ss_dssp             EETTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCS---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBC
T ss_pred             ccCCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCC---hHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccc
Confidence            34578999999999999999999999999999999987543   345567889999999999999999998773      


Q ss_pred             --------ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec-CCCce
Q 004790          402 --------TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR-DDGHI  472 (730)
Q Consensus       402 --------~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~-~~g~v  472 (730)
                              +...+|+||||+. |+|.+++..   +.+++..++.++.||+.||+|||++||+||||||+|||++ .++.+
T Consensus        85 ~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~  160 (320)
T 2i6l_A           85 TDDVGSLTELNSVYIVQEYME-TDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVL  160 (320)
T ss_dssp             CC----CCSCSEEEEEEECCS-EEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEE
T ss_pred             ccccccccccCceeEEeeccC-CCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeE
Confidence                    4578899999996 699888765   4689999999999999999999999999999999999997 56799


Q ss_pred             EEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCC
Q 004790          473 MLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSS  552 (730)
Q Consensus       473 KL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (730)
                      ||+|||++........                                                                
T Consensus       161 kl~Dfg~~~~~~~~~~----------------------------------------------------------------  176 (320)
T 2i6l_A          161 KIGDFGLARIMDPHYS----------------------------------------------------------------  176 (320)
T ss_dssp             EECCCTTCBCC---------------------------------------------------------------------
T ss_pred             EEccCccccccCCCcc----------------------------------------------------------------
Confidence            9999999854210000                                                                


Q ss_pred             CCcccccccccccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc------
Q 004790          553 TLPELVAEPTAARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ------  625 (730)
Q Consensus       553 ~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~------  625 (730)
                               .........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+......+..+....      
T Consensus       177 ---------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  247 (320)
T 2i6l_A          177 ---------HKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEE  247 (320)
T ss_dssp             ------------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHH
T ss_pred             ---------cccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchh
Confidence                     0001123468999999999876 678999999999999999999999999876544443332211      


Q ss_pred             ----------------ccCC------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          626 ----------------LRFP------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       626 ----------------~~~p------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                                      ...+      ....++.++++||.+||..||.+||+    ++++++||||+.++|.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~~~~~~~p  315 (320)
T 2i6l_A          248 DRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLT----AEEALSHPYMSIYSFP  315 (320)
T ss_dssp             HHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCC----HHHHHTSHHHHTTCC-
T ss_pred             hhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCC----HHHHhCCcccccccCc
Confidence                            0001      01357899999999999999999999    7999999999987764

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=2.8e-46  Score=401.71  Aligned_cols=261  Identities=28%  Similarity=0.439  Sum_probs=196.8

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc----
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR----  404 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~----  404 (730)
                      .+++|++++.||+|+||+||+|++..+++.||||++.+....    ..+..+|++.|+.++||||++++++|....    
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~   96 (360)
T 3e3p_A           21 EMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF----RNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDR   96 (360)
T ss_dssp             HHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTC----CCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCT
T ss_pred             hccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccc----cHHHHHHHHHHHhcCCCCcccHHHhhhccccccc
Confidence            457899999999999999999999999999999998654322    223456788888899999999999986533    


Q ss_pred             ---eeeEEeeecCCCCccccccc--cCCCCccHHHHHHhHHHHHHHHHHhH--hcceeecccCCccEEecC-CCceEEec
Q 004790          405 ---FSCLVMEYCPGGDLHTLRQR--QPGKHFSEYAARFYAAEVLLALEYLH--MLGVVYRDLKPENVLVRD-DGHIMLSD  476 (730)
Q Consensus       405 ---~l~LVmEy~~GGsL~~ll~~--~~~~~lse~~a~~~~~qIl~AL~yLH--~~gIVHRDLKPeNILl~~-~g~vKL~D  476 (730)
                         .+|+||||++++ |...+..  .....+++..++.++.||+.||.|||  ++||+||||||+||||+. ++++||+|
T Consensus        97 ~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~D  175 (360)
T 3e3p_A           97 RDIYLNVVMEYVPDT-LHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCD  175 (360)
T ss_dssp             TCEEEEEEEECCSCB-HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEECC
T ss_pred             cceeEEEEeeccccc-HHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEee
Confidence               389999999764 4332221  23357899999999999999999999  999999999999999997 89999999


Q ss_pred             ccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcc
Q 004790          477 FDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPE  556 (730)
Q Consensus       477 FGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (730)
                      ||++......                                                                      
T Consensus       176 fg~a~~~~~~----------------------------------------------------------------------  185 (360)
T 3e3p_A          176 FGSAKKLSPS----------------------------------------------------------------------  185 (360)
T ss_dssp             CTTCBCCCTT----------------------------------------------------------------------
T ss_pred             CCCceecCCC----------------------------------------------------------------------
Confidence            9998532100                                                                      


Q ss_pred             cccccccccccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc----------
Q 004790          557 LVAEPTAARSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ----------  625 (730)
Q Consensus       557 ~~~e~~~~~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~----------  625 (730)
                             ......+||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+.+....+..++...          
T Consensus       186 -------~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (360)
T 3e3p_A          186 -------EPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRK  258 (360)
T ss_dssp             -------SCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             -------CCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHh
Confidence                   0112347899999999997765 8999999999999999999999999876554444332210          


Q ss_pred             -------cc------------C-CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          626 -------LR------------F-PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       626 -------~~------------~-p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                             ..            + ......+.++++||.+||++||.+||+    +.|+++||||+++.+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~e~l~hp~f~~~~~~  324 (360)
T 3e3p_A          259 LNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMK----PYEALCHPYFDELHDP  324 (360)
T ss_dssp             HCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCC----HHHHTTSGGGGGGGCT
T ss_pred             cccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCC----HHHHhcCccccccCCc
Confidence                   00            0 111225678999999999999999999    7999999999986643

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.5e-46  Score=410.34  Aligned_cols=262  Identities=24%  Similarity=0.372  Sum_probs=193.9

Q ss_pred             CCeEE-EeEEccCCcEEEEEEEEC--CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc--cccce
Q 004790          331 SHFRL-LKRLGCGDIGSVYLSELS--STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF--ETDRF  405 (730)
Q Consensus       331 ~~y~i-l~~LG~G~fG~Vyla~~~--~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f--~~~~~  405 (730)
                      +.|++ .++||+|+||+||+|+++  .+++.||||++......     ..+.+|+.+|+.++||||++++++|  ..+..
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~-----~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~   94 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGIS-----MSACREIALLRELKHPNVISLQKVFLSHADRK   94 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCC-----HHHHHHHHHHHHCCCTTBCCCCEEEEETTTTE
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCC-----HHHHHHHHHHHhcCCCCeeeEeeEEecCCCCe
Confidence            45777 457999999999999976  56889999999765432     2467899999999999999999999  55789


Q ss_pred             eeEEeeecCCCCcccccccc-------CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe----cCCCceEE
Q 004790          406 SCLVMEYCPGGDLHTLRQRQ-------PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV----RDDGHIML  474 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~-------~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl----~~~g~vKL  474 (730)
                      +||||||+. ++|..++...       ....+++..++.|+.||+.||.|||++|||||||||+||||    +.++.+||
T Consensus        95 ~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl  173 (405)
T 3rgf_A           95 VWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKI  173 (405)
T ss_dssp             EEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred             EEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEE
Confidence            999999995 5777665532       11248999999999999999999999999999999999999    67799999


Q ss_pred             ecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCC
Q 004790          475 SDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTL  554 (730)
Q Consensus       475 ~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (730)
                      +|||+++.+.....                                                                  
T Consensus       174 ~Dfg~a~~~~~~~~------------------------------------------------------------------  187 (405)
T 3rgf_A          174 ADMGFARLFNSPLK------------------------------------------------------------------  187 (405)
T ss_dssp             CCTTCCC-------------------------------------------------------------------------
T ss_pred             EECCCceecCCCCc------------------------------------------------------------------
Confidence            99999854210000                                                                  


Q ss_pred             cccccccccccccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCc---------cceeeeecc
Q 004790          555 PELVAEPTAARSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNR---------ATLFNVVGQ  624 (730)
Q Consensus       555 ~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~---------~~l~~i~~~  624 (730)
                             ........+||+.|+|||++.+.. ++.++|||||||+||||++|+.||.+....         +.+..++. 
T Consensus       188 -------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~-  259 (405)
T 3rgf_A          188 -------PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFN-  259 (405)
T ss_dssp             ----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHH-
T ss_pred             -------ccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHH-
Confidence                   001112458999999999998854 899999999999999999999999875432         11111110 


Q ss_pred             cccCC-------------------------------------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCC
Q 004790          625 QLRFP-------------------------------------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHP  667 (730)
Q Consensus       625 ~~~~p-------------------------------------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HP  667 (730)
                      .+.+|                                     .....+.++.+||++||.+||.+|||    ++|+|+||
T Consensus       260 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~t----a~e~L~hp  335 (405)
T 3rgf_A          260 VMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRIT----SEQAMQDP  335 (405)
T ss_dssp             HHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCC----HHHHHTSG
T ss_pred             hhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCC----HHHHhcCh
Confidence            00000                                     01123678899999999999999999    79999999


Q ss_pred             CCCCCCcch
Q 004790          668 FFEGVNWAL  676 (730)
Q Consensus       668 fF~~v~w~~  676 (730)
                      ||.+..|..
T Consensus       336 ~f~~~~~~~  344 (405)
T 3rgf_A          336 YFLEDPLPT  344 (405)
T ss_dssp             GGTSSSCCC
T ss_pred             hhccCCCCc
Confidence            999866543

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=389.58  Aligned_cols=262  Identities=29%  Similarity=0.447  Sum_probs=214.9

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ..++|++++.||+|+||.||+|++..+++.||||++....     ....+.+|+.+|+.++||||+++++++.++..+|+
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l  101 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-----DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI  101 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS-----CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH-----HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence            3478999999999999999999999999999999997643     23457889999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      ||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||++......  
T Consensus       102 v~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~--  178 (314)
T 3com_A          102 VMEYCGAGSVSDIIRLR-NKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDT--  178 (314)
T ss_dssp             EEECCTTEEHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTT--
T ss_pred             EeecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhh--
Confidence            99999999999987632 357999999999999999999999999999999999999999999999999998542100  


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                ......
T Consensus       179 --------------------------------------------------------------------------~~~~~~  184 (314)
T 3com_A          179 --------------------------------------------------------------------------MAKRNT  184 (314)
T ss_dssp             --------------------------------------------------------------------------BSCBCC
T ss_pred             --------------------------------------------------------------------------ccccCc
Confidence                                                                                      001123


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-cccCCCCCCCChhHHHHHHhhhc
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-QLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      ..||+.|+|||++.+..++.++|||||||++|+|++|+.||.+......+..+... ...+.....++.++.+||.+||.
T Consensus       185 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  264 (314)
T 3com_A          185 VIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLV  264 (314)
T ss_dssp             CCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHTC
T ss_pred             cCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHHHHHHcc
Confidence            47899999999999999999999999999999999999999876544333322221 11222334568899999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                      .||.+||+    +.++++||||+...+..
T Consensus       265 ~dp~~Rpt----~~~ll~~~~~~~~~~~~  289 (314)
T 3com_A          265 KSPEQRAT----ATQLLQHPFVRSAKGVS  289 (314)
T ss_dssp             SCTTTSCC----HHHHTTSHHHHTCCCGG
T ss_pred             CChhhCcC----HHHHHhCHHHhcCCcch
Confidence            99999999    79999999999876653

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=6.2e-46  Score=387.74  Aligned_cols=260  Identities=32%  Similarity=0.481  Sum_probs=219.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||.||+|++..+++.||||++.+..... .....+.+|+++|+.++||||+++++++.+...+|+|
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   99 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN-KDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSS-SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccch-HHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence            368999999999999999999999999999999997654322 3345688999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC---CceEEecccccccccCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD---GHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~---g~vKL~DFGlA~~~~~~  486 (730)
                      |||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+   +.+||+|||++......
T Consensus       100 ~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~  177 (287)
T 2wei_A          100 GELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN  177 (287)
T ss_dssp             ECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCC
T ss_pred             EEccCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCC
Confidence            9999999998877654  469999999999999999999999999999999999999764   47999999998432100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       178 -----------------------------------------------------------------------------~~~  180 (287)
T 2wei_A          178 -----------------------------------------------------------------------------TKM  180 (287)
T ss_dssp             -----------------------------------------------------------------------------SSC
T ss_pred             -----------------------------------------------------------------------------Ccc
Confidence                                                                                         001


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccC--CCCCCCChhHHHHHHh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF--PDSPATSYASRDLIRG  644 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~--p~~~~~s~~~~dLI~~  644 (730)
                      ....||+.|+|||++.+. ++.++|||||||++|+|++|+.||.+.+....+..+..+...+  +....++.++++||++
T Consensus       181 ~~~~~~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  259 (287)
T 2wei_A          181 KDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRK  259 (287)
T ss_dssp             SCHHHHHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHHHH
T ss_pred             ccccCcccccChHHhcCC-CCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHHHH
Confidence            124689999999999875 8999999999999999999999998876555554454444333  3335678999999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      ||..||.+||+    +.++++||||+..+|
T Consensus       260 ~l~~dp~~Rps----~~ell~hp~~~~~~~  285 (287)
T 2wei_A          260 MLTFHPSLRIT----ATQCLEHPWIQKYSS  285 (287)
T ss_dssp             HTCSSGGGSCC----HHHHHHSHHHHHHCC
T ss_pred             HcccChhhCcC----HHHHhcCHHHhcccc
Confidence            99999999999    799999999987654

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=1.3e-45  Score=382.20  Aligned_cols=260  Identities=25%  Similarity=0.360  Sum_probs=217.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc--cccceee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF--ETDRFSC  407 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f--~~~~~l~  407 (730)
                      .++|++++.||+|+||.||+|+++.+++.||+|++...... ....+.+.+|+.+++.++||||+++++++  ..+..+|
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   83 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT-EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY   83 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCC-HHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEE
Confidence            46899999999999999999999999999999999765433 34556789999999999999999999987  4567899


Q ss_pred             EEeeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcc-----eeecccCCccEEecCCCceEEeccccc
Q 004790          408 LVMEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLG-----VVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~g-----IVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      +||||++|++|.+++...  ....+++..++.++.||+.||+|||++|     |+||||||+|||++.++++||+|||++
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~  163 (279)
T 2w5a_A           84 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA  163 (279)
T ss_dssp             EEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHH
T ss_pred             EEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchh
Confidence            999999999999987653  2245899999999999999999999999     999999999999999999999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ......                                                                          
T Consensus       164 ~~~~~~--------------------------------------------------------------------------  169 (279)
T 2w5a_A          164 RILNHD--------------------------------------------------------------------------  169 (279)
T ss_dssp             HHC-----------------------------------------------------------------------------
T ss_pred             eeeccc--------------------------------------------------------------------------
Confidence            542100                                                                          


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHH
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRD  640 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~d  640 (730)
                        ........||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.........+...... +....++.++++
T Consensus       170 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~-~~~~~~~~~l~~  246 (279)
T 2w5a_A          170 --TSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFR-RIPYRYSDELNE  246 (279)
T ss_dssp             --CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCC-CCCTTSCHHHHH
T ss_pred             --cccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhcccc-cCCcccCHHHHH
Confidence              00112357999999999999999999999999999999999999999886554444344333321 223467899999


Q ss_pred             HHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          641 LIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||.+||..||.+||+    +.++++|+|+.+
T Consensus       247 li~~~l~~~p~~Rps----~~~ll~~~~~~~  273 (279)
T 2w5a_A          247 IITRMLNLKDYHRPS----VEEILENPLILE  273 (279)
T ss_dssp             HHHHHTCSSGGGSCC----HHHHHTSTTCCG
T ss_pred             HHHHHcCCCcccCCC----HHHHHhChhhhh
Confidence            999999999999999    799999999974

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.7e-45  Score=384.06  Aligned_cols=268  Identities=21%  Similarity=0.285  Sum_probs=213.0

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|++++.||+|+||+||+|++..+++.||+|++...   .......+.+|+++|+.++||||+++++++.++..+|
T Consensus         7 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   83 (310)
T 3s95_A            7 FRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF---DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLN   83 (310)
T ss_dssp             ECGGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE
T ss_pred             eChhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeE
Confidence            5568999999999999999999999999999999998553   2345567889999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||++||+|.+++... ...+++..+..++.||+.||+|||++||+||||||+|||++.++++||+|||++.......
T Consensus        84 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  162 (310)
T 3s95_A           84 FITEYIKGGTLRGIIKSM-DSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEK  162 (310)
T ss_dssp             EEEECCTTCBHHHHHHHC-CTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC---
T ss_pred             EEEEecCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceeccccc
Confidence            999999999999988764 3569999999999999999999999999999999999999999999999999996532111


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                      .....              .                                                .....+......
T Consensus       163 ~~~~~--------------~------------------------------------------------~~~~~~~~~~~~  180 (310)
T 3s95_A          163 TQPEG--------------L------------------------------------------------RSLKKPDRKKRY  180 (310)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             ccccc--------------c------------------------------------------------cccccccccccc
Confidence            00000              0                                                000000111223


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeee-ecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV-VGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i-~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ..+||+.|+|||++.+..++.++|||||||++|||++|..||............ ............++.++.+||.+||
T Consensus       181 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  260 (310)
T 3s95_A          181 TVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCC  260 (310)
T ss_dssp             CCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCTTCCTTHHHHHHHHT
T ss_pred             ccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCCCCCHHHHHHHHHHc
Confidence            568999999999999999999999999999999999999999865433222211 1111222223567889999999999


Q ss_pred             cCCCCCcCCchhcHHHHHc
Q 004790          647 VKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~  665 (730)
                      ..||++||+    +.++++
T Consensus       261 ~~dP~~Rps----~~~l~~  275 (310)
T 3s95_A          261 DLDPEKRPS----FVKLEH  275 (310)
T ss_dssp             CSSGGGSCC----HHHHHH
T ss_pred             cCChhhCcC----HHHHHH
Confidence            999999999    466654

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.6e-45  Score=390.38  Aligned_cols=260  Identities=18%  Similarity=0.271  Sum_probs=215.8

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEE-----CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHF  400 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~-----~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f  400 (730)
                      .+..++|++++.||+|+||.||+|++     ..++..||||++....  .......+.+|+.+|+.+ +||||+++++++
T Consensus        41 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  118 (344)
T 1rjb_A           41 EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA--DSSEREALMSELKMMTQLGSHENIVNLLGAC  118 (344)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc--CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            45668999999999999999999997     3467789999997543  223456788999999999 999999999999


Q ss_pred             cccceeeEEeeecCCCCccccccccCC---------------------CCccHHHHHHhHHHHHHHHHHhHhcceeeccc
Q 004790          401 ETDRFSCLVMEYCPGGDLHTLRQRQPG---------------------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDL  459 (730)
Q Consensus       401 ~~~~~l~LVmEy~~GGsL~~ll~~~~~---------------------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDL  459 (730)
                      ...+.+||||||++||+|.+++.....                     ..+++..++.++.||+.||.|||++||+||||
T Consensus       119 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Di  198 (344)
T 1rjb_A          119 TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDL  198 (344)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTC
T ss_pred             eeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            999999999999999999998876432                     24789999999999999999999999999999


Q ss_pred             CCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccc
Q 004790          460 KPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKK  539 (730)
Q Consensus       460 KPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~  539 (730)
                      ||+||||+.++++||+|||++.......                                                    
T Consensus       199 kp~NIll~~~~~~kL~Dfg~~~~~~~~~----------------------------------------------------  226 (344)
T 1rjb_A          199 AARNVLVTHGKVVKICDFGLARDIMSDS----------------------------------------------------  226 (344)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCGGGCT----------------------------------------------------
T ss_pred             ChhhEEEcCCCcEEeCCCccCcccccCc----------------------------------------------------
Confidence            9999999999999999999985421100                                                    


Q ss_pred             cCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccce
Q 004790          540 TRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATL  618 (730)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l  618 (730)
                                            .........||+.|+|||++.+..++.++|||||||++|||++ |..||.+......+
T Consensus       227 ----------------------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~  284 (344)
T 1rjb_A          227 ----------------------NYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANF  284 (344)
T ss_dssp             ----------------------TSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHH
T ss_pred             ----------------------cceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHHHH
Confidence                                  0001123468999999999999999999999999999999998 99999987766666


Q ss_pred             eeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       619 ~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      ..++......+.....+.++.+||.+||..||.+||+    +.++++|
T Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps----~~~l~~~  328 (344)
T 1rjb_A          285 YKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPS----FPNLTSF  328 (344)
T ss_dssp             HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcC----HHHHHHH
Confidence            6666555555556678999999999999999999999    5666654

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=3.8e-45  Score=377.07  Aligned_cols=252  Identities=25%  Similarity=0.427  Sum_probs=205.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhh-HHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLAS-RKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~-~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      +..++|++.+.||+|+||.||+|++.  +..||||++....... ....+.+++|+++++.++||||+++++++.+++.+
T Consensus         4 ~~~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (271)
T 3dtc_A            4 IDFAELTLEEIIGIGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNL   81 (271)
T ss_dssp             CCTTSEEEEEEEEEETTEEEEEEEET--TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--C
T ss_pred             cchhheeeeeeeccCCCeEEEEEEEc--CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCce
Confidence            45689999999999999999999985  6789999987653322 23356788999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc---eeecccCCccEEecC--------CCceEEe
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG---VVYRDLKPENVLVRD--------DGHIMLS  475 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g---IVHRDLKPeNILl~~--------~g~vKL~  475 (730)
                      |+||||++|++|..++..   ..+++..++.++.||+.||.|||++|   |+||||||+|||++.        ++.+||+
T Consensus        82 ~lv~e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~  158 (271)
T 3dtc_A           82 CLVMEFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKIT  158 (271)
T ss_dssp             EEEEECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEEC
T ss_pred             EEEEEcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEc
Confidence            999999999999988764   47999999999999999999999999   999999999999986        7789999


Q ss_pred             cccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCc
Q 004790          476 DFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLP  555 (730)
Q Consensus       476 DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (730)
                      |||++.....                                                                      
T Consensus       159 Dfg~~~~~~~----------------------------------------------------------------------  168 (271)
T 3dtc_A          159 DFGLAREWHR----------------------------------------------------------------------  168 (271)
T ss_dssp             CCCC----------------------------------------------------------------------------
T ss_pred             cCCccccccc----------------------------------------------------------------------
Confidence            9999843210                                                                      


Q ss_pred             ccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCC
Q 004790          556 ELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATS  635 (730)
Q Consensus       556 ~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s  635 (730)
                              .......||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.........+.......+....++
T Consensus       169 --------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (271)
T 3dtc_A          169 --------TTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPSTCP  240 (271)
T ss_dssp             ---------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCCCCCCTTCC
T ss_pred             --------ccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCCCCCCcccC
Confidence                    001134789999999999999999999999999999999999999998766655555555555556666789


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      .++++||.+||..||.+||+    +.++++|
T Consensus       241 ~~~~~li~~~l~~~p~~Rps----~~e~l~~  267 (271)
T 3dtc_A          241 EPFAKLMEDCWNPDPHSRPS----FTNILDQ  267 (271)
T ss_dssp             HHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHHHHHHHhcCCcccCcC----HHHHHHH
Confidence            99999999999999999999    5666653

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=8.1e-46  Score=403.33  Aligned_cols=268  Identities=17%  Similarity=0.232  Sum_probs=218.4

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEE-----CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE  401 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~-----~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~  401 (730)
                      .+..++|++++.||+|+||+||+|++     ..+++.||||++....  .......+.+|+.+|+.++||||++++++|.
T Consensus        67 ~~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~  144 (367)
T 3l9p_A           67 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC--SEQDELDFLMEALIISKFNHQNIVRCIGVSL  144 (367)
T ss_dssp             BCCGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             hcCHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc--ChhhHHHHHHHHHHHHhCCCCCCCeEEEEEe
Confidence            35567899999999999999999994     4567899999996532  2244456888999999999999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccC-----CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC---ceE
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQP-----GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG---HIM  473 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~-----~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g---~vK  473 (730)
                      ++...|+|||||+||+|.+++....     ...+++..++.++.||+.||.|||++||+||||||+||||+.+|   .+|
T Consensus       145 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~k  224 (367)
T 3l9p_A          145 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAK  224 (367)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEE
T ss_pred             cCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEE
Confidence            9999999999999999999887642     14589999999999999999999999999999999999999655   599


Q ss_pred             EecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCC
Q 004790          474 LSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSST  553 (730)
Q Consensus       474 L~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (730)
                      |+|||+++......                                                                  
T Consensus       225 L~DFG~a~~~~~~~------------------------------------------------------------------  238 (367)
T 3l9p_A          225 IGDFGMARDIYRAG------------------------------------------------------------------  238 (367)
T ss_dssp             ECCCHHHHHHHHHS------------------------------------------------------------------
T ss_pred             ECCCcccccccccc------------------------------------------------------------------
Confidence            99999995431100                                                                  


Q ss_pred             CcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCC
Q 004790          554 LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSP  632 (730)
Q Consensus       554 ~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~  632 (730)
                              ........+||+.|+|||++.+..++.++|||||||++|||++ |..||.+......+..+.... ..+...
T Consensus       239 --------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~-~~~~~~  309 (367)
T 3l9p_A          239 --------YYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGG-RMDPPK  309 (367)
T ss_dssp             --------SCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC-CCCCCT
T ss_pred             --------ccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC-CCCCCc
Confidence                    0001123578999999999999999999999999999999998 999999876655554444332 333445


Q ss_pred             CCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          633 ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       633 ~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      .++..+.+||.+||..||.+||+    +.+|++|.++-.-+..
T Consensus       310 ~~~~~l~~li~~~l~~dP~~Rps----~~eil~~l~~~~~~~~  348 (367)
T 3l9p_A          310 NCPGPVYRIMTQCWQHQPEDRPN----FAIILERIEYCTQDPD  348 (367)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCC----HHHHHHHHHHHHHCHH
T ss_pred             cCCHHHHHHHHHHcCCCHhHCcC----HHHHHHHHHHHhhChh
Confidence            67899999999999999999999    6899988777543333

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=5.3e-45  Score=389.86  Aligned_cols=255  Identities=26%  Similarity=0.333  Sum_probs=211.6

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCe---EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRC---YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~---~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      ..+..++|++++.||+|+||+||+|++..++.   .||||+++...  .......+.+|+.+|+.++||||++++++|.+
T Consensus        44 ~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  121 (325)
T 3kul_A           44 REIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY--TERQRRDFLSEASIMGQFDHPNIIRLEGVVTR  121 (325)
T ss_dssp             CBCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECG
T ss_pred             cccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            34667899999999999999999999986554   59999997543  23445678899999999999999999999999


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      ++.+||||||++||+|.+++... ...+++..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||+++.
T Consensus       122 ~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~  200 (325)
T 3kul_A          122 GRLAMIVTEYMENGSLDTFLRTH-DGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRV  200 (325)
T ss_dssp             GGCCEEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEE
T ss_pred             CCccEEEeeCCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCcccc
Confidence            99999999999999999988654 35699999999999999999999999999999999999999999999999999864


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      .......                                                                         
T Consensus       201 ~~~~~~~-------------------------------------------------------------------------  207 (325)
T 3kul_A          201 LEDDPDA-------------------------------------------------------------------------  207 (325)
T ss_dssp             CC----C-------------------------------------------------------------------------
T ss_pred             cccCccc-------------------------------------------------------------------------
Confidence            3210000                                                                         


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      ........||+.|+|||++.+..++.++|||||||++|||++ |..||.+......+..+. .....+....++.++.+|
T Consensus       208 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l  286 (325)
T 3kul_A          208 AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVE-EGYRLPAPMGCPHALHQL  286 (325)
T ss_dssp             CEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHH-TTCCCCCCTTCCHHHHHH
T ss_pred             eeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHH-cCCCCCCCCCcCHHHHHH
Confidence            000112357889999999999999999999999999999998 999998876655544433 334555566789999999


Q ss_pred             HHhhhcCCCCCcCCch
Q 004790          642 IRGLLVKEPQHRLGVK  657 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~  657 (730)
                      |.+||..||.+||++.
T Consensus       287 i~~~l~~dp~~Rps~~  302 (325)
T 3kul_A          287 MLDCWHKDRAQRPRFS  302 (325)
T ss_dssp             HHHHTCSSGGGSCCHH
T ss_pred             HHHHccCChhhCcCHH
Confidence            9999999999999953

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=4.2e-45  Score=383.88  Aligned_cols=255  Identities=27%  Similarity=0.421  Sum_probs=217.4

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +.|++++.||+|+||.||+|++..+++.||||++......  .....+.+|+.+|+.++||||+++++++.++..+|+||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   99 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE--DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIM   99 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCS--TTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccH--HHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEE
Confidence            5699999999999999999999999999999999765432  23566889999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      ||++|++|.+++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......    
T Consensus       100 e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~----  172 (303)
T 3a7i_A          100 EYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT----  172 (303)
T ss_dssp             ECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTT----
T ss_pred             EeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCcc----
Confidence            99999999998865   46999999999999999999999999999999999999999999999999998542100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              .......+
T Consensus       173 ------------------------------------------------------------------------~~~~~~~~  180 (303)
T 3a7i_A          173 ------------------------------------------------------------------------QIKRNTFV  180 (303)
T ss_dssp             ------------------------------------------------------------------------BCCBCCCC
T ss_pred             ------------------------------------------------------------------------ccccCccC
Confidence                                                                                    00112357


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEP  650 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP  650 (730)
                      ||+.|+|||++.+..++.++|||||||++|+|++|+.||........+..+.... .......++..+++||.+||..||
T Consensus       181 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~dp  259 (303)
T 3a7i_A          181 GTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNN-PPTLEGNYSKPLKEFVEACLNKEP  259 (303)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSC-CCCCCSSCCHHHHHHHHHHCCSSG
T ss_pred             CCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCC-CCCCccccCHHHHHHHHHHcCCCh
Confidence            9999999999999999999999999999999999999998765444333332222 122234678999999999999999


Q ss_pred             CCcCCchhcHHHHHcCCCCCC
Q 004790          651 QHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       651 ~~R~t~~~~a~elL~HPfF~~  671 (730)
                      .+||+    +.++++||||..
T Consensus       260 ~~Rps----~~~ll~~~~~~~  276 (303)
T 3a7i_A          260 SFRPT----AKELLKHKFILR  276 (303)
T ss_dssp             GGSCC----HHHHTTCHHHHH
T ss_pred             hhCcC----HHHHhhChhhhc
Confidence            99999    799999999964

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=3.4e-45  Score=394.58  Aligned_cols=261  Identities=28%  Similarity=0.395  Sum_probs=206.7

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhh--------hhhHHHHHHHHHHHHHHHhcCCCCCcccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS--------LASRKKLTRAQTEREILQLLDHPFLPTLYTH  399 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~--------~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~  399 (730)
                      ...++|++++.||+|+||.||+|.+.. ++.||||++....        .........+.+|+++|+.++||||++++++
T Consensus        19 ~~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~   97 (362)
T 3pg1_A           19 AMQSPYTVQRFISSGSYGAVCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDI   97 (362)
T ss_dssp             HTTCSCEEEEEEEEETTEEEEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEE
T ss_pred             HhccceEEeEEeccCCCEEEEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeee
Confidence            445889999999999999999999865 8899999986432        2233445778999999999999999999999


Q ss_pred             c-----cccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEE
Q 004790          400 F-----ETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIML  474 (730)
Q Consensus       400 f-----~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL  474 (730)
                      |     .....+|+||||+. |+|..++... ...+++..++.++.||+.||.|||++||+||||||+||||+.++++||
T Consensus        98 ~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl  175 (362)
T 3pg1_A           98 FVHFEEPAMHKLYLVTELMR-TDLAQVIHDQ-RIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITI  175 (362)
T ss_dssp             EEECCTTTCCEEEEEEECCS-EEHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEE
T ss_pred             EEeccCCCcceEEEEEccCC-CCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCCEEE
Confidence            8     34457899999996 6777766643 357999999999999999999999999999999999999999999999


Q ss_pred             ecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCC
Q 004790          475 SDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTL  554 (730)
Q Consensus       475 ~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (730)
                      +|||++.....                                                                     
T Consensus       176 ~Dfg~~~~~~~---------------------------------------------------------------------  186 (362)
T 3pg1_A          176 CDFNLAREDTA---------------------------------------------------------------------  186 (362)
T ss_dssp             CCTTC---------------------------------------------------------------------------
T ss_pred             EecCccccccc---------------------------------------------------------------------
Confidence            99999842100                                                                     


Q ss_pred             cccccccccccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc--------
Q 004790          555 PELVAEPTAARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ--------  625 (730)
Q Consensus       555 ~~~~~e~~~~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~--------  625 (730)
                              .......+||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+......+..++...        
T Consensus       187 --------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~  258 (362)
T 3pg1_A          187 --------DANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDV  258 (362)
T ss_dssp             -----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHH
T ss_pred             --------ccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHh
Confidence                    001123478999999999987 678999999999999999999999998865443333322100        


Q ss_pred             ----------------ccCC------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          626 ----------------LRFP------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       626 ----------------~~~p------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                                      ...+      ..+..+..+.+||.+||..||.+||+    +.++++||||+.+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~f~~~  323 (362)
T 3pg1_A          259 VMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRIS----TEQALRHPYFESL  323 (362)
T ss_dssp             HHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCC----HHHHHTSGGGTTT
T ss_pred             hhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCC----HHHHHcCchhhhc
Confidence                            0001      11345788999999999999999999    7999999999986

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=1.4e-45  Score=397.61  Aligned_cols=258  Identities=22%  Similarity=0.388  Sum_probs=206.7

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-----------CCCCcc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-----------HPFLPT  395 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-----------HPnIV~  395 (730)
                      .+..++|++++.||+|+||+||+|++..+++.||||++.+..    .....+.+|+.+|+.+.           ||||++
T Consensus        15 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~   90 (373)
T 1q8y_A           15 PYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK----VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILK   90 (373)
T ss_dssp             EETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCC
T ss_pred             cccCCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc----cchhhhhHHHHHHHHhhcccccchhccccchHHH
Confidence            355689999999999999999999999999999999997543    23355778999998876           899999


Q ss_pred             ccccccccc----eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhc-ceeecccCCccEEec---
Q 004790          396 LYTHFETDR----FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML-GVVYRDLKPENVLVR---  467 (730)
Q Consensus       396 L~~~f~~~~----~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~-gIVHRDLKPeNILl~---  467 (730)
                      ++++|....    .+|+||||+ |++|..++.......+++..++.++.||+.||.|||++ ||+||||||+||||+   
T Consensus        91 ~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~  169 (373)
T 1q8y_A           91 LLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVD  169 (373)
T ss_dssp             CCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEE
T ss_pred             HHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccC
Confidence            999998654    899999999 99999988876566799999999999999999999998 999999999999995   


Q ss_pred             ---CCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          468 ---DDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       468 ---~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                         ..+.+||+|||++.....                                                           
T Consensus       170 ~~~~~~~~kl~Dfg~a~~~~~-----------------------------------------------------------  190 (373)
T 1q8y_A          170 SPENLIQIKIADLGNACWYDE-----------------------------------------------------------  190 (373)
T ss_dssp             TTTTEEEEEECCCTTCEETTB-----------------------------------------------------------
T ss_pred             CCcCcceEEEcccccccccCC-----------------------------------------------------------
Confidence               345899999999843210                                                           


Q ss_pred             ccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc------ce
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA------TL  618 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~------~l  618 (730)
                                          .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.....      .+
T Consensus       191 --------------------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~  250 (373)
T 1q8y_A          191 --------------------HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHI  250 (373)
T ss_dssp             --------------------CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHH
T ss_pred             --------------------CCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHH
Confidence                                0112378999999999999999999999999999999999999998654211      01


Q ss_pred             eeeeccc----------------------------------------ccCCCCCCCChhHHHHHHhhhcCCCCCcCCchh
Q 004790          619 FNVVGQQ----------------------------------------LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKR  658 (730)
Q Consensus       619 ~~i~~~~----------------------------------------~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~  658 (730)
                      ..++...                                        ..+......+.++++||.+||..||.+||+   
T Consensus       251 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt---  327 (373)
T 1q8y_A          251 AQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRAD---  327 (373)
T ss_dssp             HHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBC---
T ss_pred             HHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCC---
Confidence            0100000                                        000111234567889999999999999999   


Q ss_pred             cHHHHHcCCCCCCC
Q 004790          659 GATEIKQHPFFEGV  672 (730)
Q Consensus       659 ~a~elL~HPfF~~v  672 (730)
                       ++|+++||||++.
T Consensus       328 -~~ell~hp~f~~~  340 (373)
T 1q8y_A          328 -AGGLVNHPWLKDT  340 (373)
T ss_dssp             -HHHHHTCGGGTTC
T ss_pred             -HHHHhhChhhhcc
Confidence             7999999999974

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=3.1e-45  Score=390.89  Aligned_cols=272  Identities=22%  Similarity=0.294  Sum_probs=214.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      +..++|++++.||+|+||+||+|++..+++.||||++......     ..+.+|+++|+.+ +||||+++++++.++...
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-----~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~   80 (330)
T 2izr_A            6 MVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRA-----PQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYN   80 (330)
T ss_dssp             EETTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSS-----CCHHHHHHHHHHHCSCTTSCCEEEEEEETTEE
T ss_pred             EEcCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccch-----HHHHHHHHHHHHhhCCCCCCEEEEEEecCCcc
Confidence            3457899999999999999999999999999999999765322     2467899999999 999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc-----eEEecccccc
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH-----IMLSDFDLSL  481 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~-----vKL~DFGlA~  481 (730)
                      |+||||+ |++|.+++... ...+++..++.++.||+.||+|||++||+||||||+||||+.++.     +||+|||+++
T Consensus        81 ~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~  158 (330)
T 2izr_A           81 AMVLELL-GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK  158 (330)
T ss_dssp             EEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCE
T ss_pred             EEEEEeC-CCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccce
Confidence            9999999 99999988764 357999999999999999999999999999999999999999887     9999999996


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      .+........                                                                     .
T Consensus       159 ~~~~~~~~~~---------------------------------------------------------------------~  169 (330)
T 2izr_A          159 EYIDPETKKH---------------------------------------------------------------------I  169 (330)
T ss_dssp             ESBCTTTCCB---------------------------------------------------------------------C
T ss_pred             eeecCCCCcc---------------------------------------------------------------------c
Confidence            5321000000                                                                     0


Q ss_pred             ccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccc---eeeeecccccCCC---CCCCC
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT---LFNVVGQQLRFPD---SPATS  635 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~---l~~i~~~~~~~p~---~~~~s  635 (730)
                      ........+||+.|+|||++.+..++.++|||||||++|||++|+.||.+......   +..+.......+.   ....+
T Consensus       170 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p  249 (330)
T 2izr_A          170 PYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFP  249 (330)
T ss_dssp             CCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTCH
T ss_pred             cccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhccCh
Confidence            00112346899999999999999999999999999999999999999998644322   2222222222221   12234


Q ss_pred             hhHHHHHHhhhcCCCCCcCCchhc---HHHHH---cCCCCCCCCcch
Q 004790          636 YASRDLIRGLLVKEPQHRLGVKRG---ATEIK---QHPFFEGVNWAL  676 (730)
Q Consensus       636 ~~~~dLI~~lL~~DP~~R~t~~~~---a~elL---~HPfF~~v~w~~  676 (730)
                       ++++||.+||..||.+||++...   ..+++   ...+...++|..
T Consensus       250 -~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~~~~~~~~~dw~~  295 (330)
T 2izr_A          250 -EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIG  295 (330)
T ss_dssp             -HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTCCCSCCCTTTT
T ss_pred             -HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCccCCC
Confidence             89999999999999999996422   22222   245566788973

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=8.7e-45  Score=381.64  Aligned_cols=259  Identities=20%  Similarity=0.291  Sum_probs=217.5

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEE-----CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHF  400 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~-----~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f  400 (730)
                      .+..++|++++.||+|+||.||+|++     ..+++.||||++.....  ....+.+.+|+.+|+.+ +||||+++++++
T Consensus        19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~   96 (313)
T 1t46_A           19 EFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH--LTEREALMSELKVLSYLGNHMNIVNLLGAC   96 (313)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchh--HHHHHHHHHHHHHHhhcccCCCeeeEEEEE
Confidence            35568999999999999999999985     45778999999976532  23456788999999999 999999999999


Q ss_pred             cccceeeEEeeecCCCCccccccccCC----------------CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccE
Q 004790          401 ETDRFSCLVMEYCPGGDLHTLRQRQPG----------------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENV  464 (730)
Q Consensus       401 ~~~~~l~LVmEy~~GGsL~~ll~~~~~----------------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNI  464 (730)
                      .+++..|+||||+++|+|.+++.....                ..+++..++.++.||+.||.|||++||+||||||+||
T Consensus        97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Ni  176 (313)
T 1t46_A           97 TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI  176 (313)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             ecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceE
Confidence            999999999999999999998876532                2489999999999999999999999999999999999


Q ss_pred             EecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          465 LVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       465 Ll~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                      |++.++.+||+|||++........                                                        
T Consensus       177 l~~~~~~~kl~Dfg~~~~~~~~~~--------------------------------------------------------  200 (313)
T 1t46_A          177 LLTHGRITKICDFGLARDIKNDSN--------------------------------------------------------  200 (313)
T ss_dssp             EEETTTEEEECCCGGGSCTTSCTT--------------------------------------------------------
T ss_pred             EEcCCCCEEEcccccccccccccc--------------------------------------------------------
Confidence            999999999999999854211000                                                        


Q ss_pred             ccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeec
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVG  623 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~  623 (730)
                                        ........||+.|+|||++.+..++.++|||||||++|||++ |+.||.+......+..++.
T Consensus       201 ------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~  262 (313)
T 1t46_A          201 ------------------YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIK  262 (313)
T ss_dssp             ------------------SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHH
T ss_pred             ------------------ceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHhc
Confidence                              001112468899999999999999999999999999999998 9999998776666666555


Q ss_pred             ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       624 ~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .....+.....+.++++||.+||..||.+||+    +.++++
T Consensus       263 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps----~~ell~  300 (313)
T 1t46_A          263 EGFRMLSPEHAPAEMYDIMKTCWDADPLKRPT----FKQIVQ  300 (313)
T ss_dssp             HTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             cCCCCCCcccCCHHHHHHHHHHcCCCchhCcC----HHHHHH
Confidence            55555555678999999999999999999999    456654

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=4.7e-45  Score=374.76  Aligned_cols=251  Identities=18%  Similarity=0.290  Sum_probs=213.4

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc--c
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD--R  404 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~--~  404 (730)
                      .+..++|++++.||+|+||.||+|++.  ++.||+|++...... ......+.+|+.+|+.++||||+++++++.+.  .
T Consensus         6 ~i~~~~y~~~~~lg~G~~g~V~~~~~~--~~~~avK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   82 (271)
T 3kmu_A            6 GIDFKQLNFLTKLNENHSGELWKGRWQ--GNDIVVKVLKVRDWS-TRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAP   82 (271)
T ss_dssp             CCCGGGCEEEEEEEEETTEEEEEEEET--TEEEEEEEECCTTCC-HHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSS
T ss_pred             CCCHHHhHHHHHhcCCCcceEEEEEEC--CeeEEEEEecccccC-HHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCC
Confidence            356789999999999999999999985  678999999765432 34456789999999999999999999999876  7


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc--eeecccCCccEEecCCCceEEeccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG--VVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g--IVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      .+|+||||++||+|.+++.......+++..++.++.||+.||.|||++|  |+||||||+|||++.+|.++|+|||++..
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~  162 (271)
T 3kmu_A           83 HPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFS  162 (271)
T ss_dssp             SCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCT
T ss_pred             CeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceee
Confidence            8999999999999999998765557999999999999999999999999  99999999999999999999999998621


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      .                                                                               
T Consensus       163 ~-------------------------------------------------------------------------------  163 (271)
T 3kmu_A          163 F-------------------------------------------------------------------------------  163 (271)
T ss_dssp             T-------------------------------------------------------------------------------
T ss_pred             e-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cccccccccCcccCChhhhccCCCCC---cceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGS---AVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASR  639 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~---~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~  639 (730)
                        .....+||+.|+|||++.+..++.   ++|||||||++|||++|+.||.+.........+.......+....++.++.
T Consensus       164 --~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (271)
T 3kmu_A          164 --QSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPHVS  241 (271)
T ss_dssp             --SCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCCCCCTTCCHHHH
T ss_pred             --cccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCCCCCCCCCCHHHH
Confidence              001236899999999999876654   799999999999999999999987766655555555555555567899999


Q ss_pred             HHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          640 DLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      +||.+||..||++||++    +++++
T Consensus       242 ~li~~~l~~~p~~Rps~----~~il~  263 (271)
T 3kmu_A          242 KLMKICMNEDPAKRPKF----DMIVP  263 (271)
T ss_dssp             HHHHHHTCSSGGGSCCH----HHHHH
T ss_pred             HHHHHHcCCChhhCcCH----HHHHH
Confidence            99999999999999994    55543

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=7.9e-45  Score=375.38  Aligned_cols=254  Identities=22%  Similarity=0.331  Sum_probs=212.3

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .+..++|++++.||+|+||+||+|++.. ++.||+|++.+.....    +.+.+|+++|+.++||||+++++++.++..+
T Consensus         6 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~----~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   80 (269)
T 4hcu_A            6 VIDPSELTFVQEIGSGQFGLVHLGYWLN-KDKVAIKTIREGAMSE----EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPI   80 (269)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEEECTTSBCH----HHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred             EeChhhceeeheecCCCccEEEEEEecC-CCeEEEEEecccccCH----HHHHHHHHHHHhCCCCCEeeEEEEEecCCce
Confidence            4566899999999999999999999974 5679999998654332    3478899999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......
T Consensus        81 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~  159 (269)
T 4hcu_A           81 CLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD  159 (269)
T ss_dssp             EEEEECCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCH
T ss_pred             EEEEEeCCCCcHHHHHHhc-CcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEecccccccccccc
Confidence            9999999999999988654 346899999999999999999999999999999999999999999999999998542100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       160 ---------------------------------------------------------------------------~~~~~  164 (269)
T 4hcu_A          160 ---------------------------------------------------------------------------QYTSS  164 (269)
T ss_dssp             ---------------------------------------------------------------------------HHHST
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00011


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ....||+.|+|||++.+..++.++|||||||++|+|++ |+.||.+.........+... .........+.++.+||.+|
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~  243 (269)
T 4hcu_A          165 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTG-FRLYKPRLASTHVYQIMNHC  243 (269)
T ss_dssp             TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTT-CCCCCCTTSCHHHHHHHHHH
T ss_pred             cCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcC-ccCCCCCcCCHHHHHHHHHH
Confidence            12357889999999999999999999999999999999 99999887665554444333 33334456789999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcC
Q 004790          646 LVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~H  666 (730)
                      |..||.+||+    +.++++|
T Consensus       244 l~~~p~~Rps----~~~ll~~  260 (269)
T 4hcu_A          244 WRERPEDRPA----FSRLLRQ  260 (269)
T ss_dssp             TCSSGGGSCC----HHHHHHH
T ss_pred             ccCCcccCcC----HHHHHHH
Confidence            9999999999    5666654

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=1.1e-44  Score=381.17  Aligned_cols=258  Identities=22%  Similarity=0.310  Sum_probs=213.5

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEE-----CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE  401 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~-----~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~  401 (730)
                      .+..++|++.+.||+|+||.||+|++     +.++..||+|++....  .......+.+|+++|+.++||||+++++++.
T Consensus        19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~   96 (314)
T 2ivs_A           19 EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA--SPSELRDLLSEFNVLKQVNHPHVIKLYGACS   96 (314)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred             ccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC--CHHHHHHHHHHHHHHhhCCCCceeeEEEEEe
Confidence            45668899999999999999999998     3456899999997543  3355677899999999999999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccCC----------------------CCccHHHHHHhHHHHHHHHHHhHhcceeeccc
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQPG----------------------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDL  459 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~~----------------------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDL  459 (730)
                      +++.+|+||||++|++|.+++.....                      ..+++..++.++.||+.||.|||++||+||||
T Consensus        97 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~di  176 (314)
T 2ivs_A           97 QDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDL  176 (314)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             cCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCccccc
Confidence            99999999999999999998876422                      34899999999999999999999999999999


Q ss_pred             CCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccc
Q 004790          460 KPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKK  539 (730)
Q Consensus       460 KPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~  539 (730)
                      ||+|||++.++++||+|||++........                                                   
T Consensus       177 kp~NIli~~~~~~kl~Dfg~~~~~~~~~~---------------------------------------------------  205 (314)
T 2ivs_A          177 AARNILVAEGRKMKISDFGLSRDVYEEDS---------------------------------------------------  205 (314)
T ss_dssp             SGGGEEEETTTEEEECCCTTCEECTTTSC---------------------------------------------------
T ss_pred             chheEEEcCCCCEEEcccccccccccccc---------------------------------------------------
Confidence            99999999999999999999854311000                                                   


Q ss_pred             cCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccce
Q 004790          540 TRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATL  618 (730)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l  618 (730)
                                             ........||+.|+|||++.+..++.++|||||||++|||++ |..||.+.......
T Consensus       206 -----------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~  262 (314)
T 2ivs_A          206 -----------------------YVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLF  262 (314)
T ss_dssp             -----------------------EECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH
T ss_pred             -----------------------ceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence                                   001112367899999999999999999999999999999999 99999887654443


Q ss_pred             eeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       619 ~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                       ..+......+....++.++++||.+||..||.+||+    +.++++
T Consensus       263 -~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps----~~~l~~  304 (314)
T 2ivs_A          263 -NLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPV----FADISK  304 (314)
T ss_dssp             -HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             -HHhhcCCcCCCCccCCHHHHHHHHHHccCChhhCcC----HHHHHH
Confidence             333333333444578999999999999999999999    456654

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=8.3e-45  Score=378.30  Aligned_cols=272  Identities=25%  Similarity=0.427  Sum_probs=206.4

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc--------
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET--------  402 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~--------  402 (730)
                      ++|++++.||+|+||.||+|++..+++.||||++...    ......+.+|+.+|+.++||||++++++|.+        
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   81 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT----EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPM   81 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC--
T ss_pred             ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc----HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhh
Confidence            5799999999999999999999999999999999653    2445678899999999999999999988743        


Q ss_pred             -----cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecc
Q 004790          403 -----DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF  477 (730)
Q Consensus       403 -----~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DF  477 (730)
                           ...+|+||||++|++|.+++... ...+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+||
T Consensus        82 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~df  160 (303)
T 1zy4_A           82 TAVKKKSTLFIQMEYCENGTLYDLIHSE-NLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDF  160 (303)
T ss_dssp             ----CEEEEEEEEECCCSCBHHHHHHHS-CGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCC
T ss_pred             cccccCCceEEEEecCCCCCHHHhhhcc-ccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeC
Confidence                 56789999999999999988754 346788999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccc
Q 004790          478 DLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPEL  557 (730)
Q Consensus       478 GlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (730)
                      |++.............                                                         ...    
T Consensus       161 g~~~~~~~~~~~~~~~---------------------------------------------------------~~~----  179 (303)
T 1zy4_A          161 GLAKNVHRSLDILKLD---------------------------------------------------------SQN----  179 (303)
T ss_dssp             CCCSCTTC------------------------------------------------------------------------
T ss_pred             cchhhcccccchhccc---------------------------------------------------------ccc----
Confidence            9985432111000000                                                         000    


Q ss_pred             ccccccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeeecccccCCC--CCC
Q 004790          558 VAEPTAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVGQQLRFPD--SPA  633 (730)
Q Consensus       558 ~~e~~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~~~~~~~p~--~~~  633 (730)
                       ...........+||+.|+|||++.+. .++.++|||||||++|||++   ||...... ..+..+......+|.  ...
T Consensus       180 -~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (303)
T 1zy4_A          180 -LPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERVNILKKLRSVSIEFPPDFDDN  255 (303)
T ss_dssp             ---------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHHSTTCCCCTTCCTT
T ss_pred             -ccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhHHHHHHhccccccccCcccccc
Confidence             00001112346899999999999876 58999999999999999998   55432221 222222222233332  245


Q ss_pred             CChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          634 TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       634 ~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                      .+..+++||++||..||.+||+    ++++++||||+...+..
T Consensus       256 ~~~~~~~li~~~l~~dp~~Rps----~~~ll~h~~~~~~~~~~  294 (303)
T 1zy4_A          256 KMKVEKKIIRLLIDHDPNKRPG----ARTLLNSGWLPVKHQDE  294 (303)
T ss_dssp             TSHHHHHHHHHHTCSSGGGSCC----HHHHHHSSCSCCCCHHH
T ss_pred             chHHHHHHHHHHHhcCcccCcC----HHHHhCCCCcCCCChHH
Confidence            5678999999999999999999    79999999999766653

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=5.5e-45  Score=391.46  Aligned_cols=254  Identities=26%  Similarity=0.372  Sum_probs=186.7

Q ss_pred             ccCCeEEEe-EEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc----c
Q 004790          329 GMSHFRLLK-RLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET----D  403 (730)
Q Consensus       329 ~~~~y~il~-~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~----~  403 (730)
                      ..++|++++ .||+|+||+||+|+++.+++.||||++.+...    .   .++....++.++||||++++++|..    +
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~---~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~   98 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPK----A---RQEVDHHWQASGGPHIVCILDVYENMHHGK   98 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHH----H---HHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHH----H---HHHHHHHHHhcCCCChHHHHHHHhhccCCC
Confidence            357899976 59999999999999999999999999975421    1   1223344677899999999999976    5


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---CCceEEeccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---DGHIMLSDFDLS  480 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~g~vKL~DFGlA  480 (730)
                      ..+|+|||||+||+|.+++.......+++..++.++.||+.||.|||++||+||||||+||||+.   ++.+||+|||++
T Consensus        99 ~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~  178 (336)
T 3fhr_A           99 RCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFA  178 (336)
T ss_dssp             EEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             ceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccc
Confidence            67999999999999999988765567999999999999999999999999999999999999976   456999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      .....                                                                           
T Consensus       179 ~~~~~---------------------------------------------------------------------------  183 (336)
T 3fhr_A          179 KETTQ---------------------------------------------------------------------------  183 (336)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             eeccc---------------------------------------------------------------------------
Confidence            43210                                                                           


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccce----eeeeccccc--CCCCCCC
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL----FNVVGQQLR--FPDSPAT  634 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l----~~i~~~~~~--~p~~~~~  634 (730)
                         ......+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.......    ..+......  .+....+
T Consensus       184 ---~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (336)
T 3fhr_A          184 ---NALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEV  260 (336)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTTSTTC
T ss_pred             ---cccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccC
Confidence               0011347899999999999888999999999999999999999999876543321    122222222  2334578


Q ss_pred             ChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          635 SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       635 s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      +.++++||.+||..||.+||+    ++++++||||+.
T Consensus       261 ~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~~~~  293 (336)
T 3fhr_A          261 SEDAKQLIRLLLKTDPTERLT----ITQFMNHPWINQ  293 (336)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCC----HHHHHHSHHHHT
T ss_pred             CHHHHHHHHHHCCCChhHCcC----HHHHhcCccccc
Confidence            999999999999999999999    799999999986

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1.2e-44  Score=376.74  Aligned_cols=253  Identities=20%  Similarity=0.296  Sum_probs=215.6

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      .+.+..++|++.+.||+|+||+||+|++..++..||+|++....    ...+.+.+|+++|+.++||||+++++++.++.
T Consensus         7 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   82 (288)
T 3kfa_A            7 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP   82 (288)
T ss_dssp             TTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS----THHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             cccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH----HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC
Confidence            34567789999999999999999999999999999999997643    23456789999999999999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|+||||+.|++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++....
T Consensus        83 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~  162 (288)
T 3kfa_A           83 PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMT  162 (288)
T ss_dssp             SEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSC
T ss_pred             CEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceecc
Confidence            99999999999999999887666779999999999999999999999999999999999999999999999999985321


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                           ...
T Consensus       163 ~~---------------------------------------------------------------------------~~~  167 (288)
T 3kfa_A          163 GD---------------------------------------------------------------------------TYT  167 (288)
T ss_dssp             SS---------------------------------------------------------------------------SSE
T ss_pred             CC---------------------------------------------------------------------------ccc
Confidence            00                                                                           000


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ......||+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+..... ..+......+....++.++.+||.
T Consensus       168 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~li~  246 (288)
T 3kfa_A          168 AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY-ELLEKDYRMERPEGCPEKVYELMR  246 (288)
T ss_dssp             EETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH-HHHHTTCCCCCCTTCCHHHHHHHH
T ss_pred             cccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHH-HHHhccCCCCCCCCCCHHHHHHHH
Confidence            1122467899999999999999999999999999999999 99999876544333 333344445555678999999999


Q ss_pred             hhhcCCCCCcCCch
Q 004790          644 GLLVKEPQHRLGVK  657 (730)
Q Consensus       644 ~lL~~DP~~R~t~~  657 (730)
                      +||..||.+||++.
T Consensus       247 ~~l~~dp~~Rps~~  260 (288)
T 3kfa_A          247 ACWQWNPSDRPSFA  260 (288)
T ss_dssp             HHTCSSGGGSCCHH
T ss_pred             HHhCCChhhCcCHH
Confidence            99999999999953

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-44  Score=385.72  Aligned_cols=254  Identities=20%  Similarity=0.292  Sum_probs=211.5

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEEC-----CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELS-----STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF  400 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~-----~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f  400 (730)
                      ..+..++|++++.||+|+||.||+|++.     .+++.||||++++..  .......+.+|+.+|+.++||||+++++++
T Consensus        42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~  119 (343)
T 1luf_A           42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDNPNIVKLLGVC  119 (343)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            3456789999999999999999999997     355899999997653  234556789999999999999999999999


Q ss_pred             cccceeeEEeeecCCCCccccccccC----------------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecc
Q 004790          401 ETDRFSCLVMEYCPGGDLHTLRQRQP----------------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRD  458 (730)
Q Consensus       401 ~~~~~l~LVmEy~~GGsL~~ll~~~~----------------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRD  458 (730)
                      .+++.+|+||||++||+|.+++....                      ...+++..++.++.||+.||.|||++||+|||
T Consensus       120 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~D  199 (343)
T 1luf_A          120 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRD  199 (343)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred             ccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            99999999999999999999887632                      15689999999999999999999999999999


Q ss_pred             cCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCccccccccc
Q 004790          459 LKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKK  538 (730)
Q Consensus       459 LKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~  538 (730)
                      |||+|||++.++.+||+|||++........                                                  
T Consensus       200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~--------------------------------------------------  229 (343)
T 1luf_A          200 LATRNCLVGENMVVKIADFGLSRNIYSADY--------------------------------------------------  229 (343)
T ss_dssp             CSGGGEEECGGGCEEECCCSCHHHHTGGGC--------------------------------------------------
T ss_pred             CCcceEEECCCCeEEEeecCCCcccccCcc--------------------------------------------------
Confidence            999999999999999999999854311000                                                  


Q ss_pred             ccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccc
Q 004790          539 KTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRAT  617 (730)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~  617 (730)
                                              ........||+.|+|||++.+..++.++|||||||++|||++ |..||.+......
T Consensus       230 ------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~  285 (343)
T 1luf_A          230 ------------------------YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEV  285 (343)
T ss_dssp             ------------------------BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH
T ss_pred             ------------------------ccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCChHHH
Confidence                                    001112468999999999999999999999999999999998 9999988766555


Q ss_pred             eeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          618 LFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       618 l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      +..+..... .+....++.++.+||++||..||++||++
T Consensus       286 ~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~~p~~Rps~  323 (343)
T 1luf_A          286 IYYVRDGNI-LACPENCPLELYNLMRLCWSKLPADRPSF  323 (343)
T ss_dssp             HHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHHhCCCc-CCCCCCCCHHHHHHHHHHcccCcccCCCH
Confidence            544443332 23335678999999999999999999995

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=5.8e-45  Score=385.56  Aligned_cols=274  Identities=20%  Similarity=0.261  Sum_probs=221.4

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEEC-----CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELS-----STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE  401 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~-----~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~  401 (730)
                      .+..++|++.+.||+|+||.||+|++.     .+++.||||++....  .......+.+|+.+|+.++||||+++++++.
T Consensus        21 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~   98 (322)
T 1p4o_A           21 EVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEASVMKEFNCHHVVRLLGVVS   98 (322)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS--CHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred             cchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc--CHHHHHHHHHHHHHHHhcCCCCEeeeEEEEc
Confidence            456688999999999999999999886     457789999997643  2234456889999999999999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccC--------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceE
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQP--------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIM  473 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~--------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vK  473 (730)
                      ++...|+||||++||+|.+++....        ...+++..++.++.||+.||.|||++||+||||||+|||++.++++|
T Consensus        99 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~~k  178 (322)
T 1p4o_A           99 QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVK  178 (322)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEE
T ss_pred             cCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCeEE
Confidence            9999999999999999999876531        13568899999999999999999999999999999999999999999


Q ss_pred             EecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCC
Q 004790          474 LSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSST  553 (730)
Q Consensus       474 L~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (730)
                      |+|||++.......                                                                  
T Consensus       179 l~Dfg~~~~~~~~~------------------------------------------------------------------  192 (322)
T 1p4o_A          179 IGDFGMTRDIYETD------------------------------------------------------------------  192 (322)
T ss_dssp             ECCTTCCCGGGGGG------------------------------------------------------------------
T ss_pred             ECcCcccccccccc------------------------------------------------------------------
Confidence            99999985321000                                                                  


Q ss_pred             CcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCC
Q 004790          554 LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSP  632 (730)
Q Consensus       554 ~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~  632 (730)
                              .........||+.|+|||++.+..++.++|||||||++|||++ |..||.+.........+..... .+...
T Consensus       193 --------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~  263 (322)
T 1p4o_A          193 --------YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGL-LDKPD  263 (322)
T ss_dssp             --------CEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCC-CCCCT
T ss_pred             --------ccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHcCCc-CCCCC
Confidence                    0001123468999999999999999999999999999999999 8999988765544444433322 23345


Q ss_pred             CCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC--CCCCCCCcchh
Q 004790          633 ATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH--PFFEGVNWALI  677 (730)
Q Consensus       633 ~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H--PfF~~v~w~~~  677 (730)
                      .++.++++||.+||..||.+||++.+..+.+.++  +||+.++|...
T Consensus       264 ~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~~~~~~~~~~~  310 (322)
T 1p4o_A          264 NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYS  310 (322)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHHHCSTTS
T ss_pred             CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhccCCcccccccc
Confidence            6789999999999999999999954444433332  88888777654

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=7.5e-45  Score=387.50  Aligned_cols=258  Identities=19%  Similarity=0.233  Sum_probs=205.8

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeE----EEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCY----FAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE  401 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~----vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~  401 (730)
                      ..+..++|++++.||+|+||+||+|++..++..    ||+|++....  .......+.+|+.+++.++||||+++++++.
T Consensus         8 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~   85 (325)
T 3kex_A            8 RIFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKS--GRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP   85 (325)
T ss_dssp             CBCCTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTT--SCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             hhcCHhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccc--cHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc
Confidence            345678999999999999999999999888876    6666664332  1122345678999999999999999999887


Q ss_pred             ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                       +...|+||||+++|+|.+++... ...+++..++.|+.||+.||.|||++||+||||||+|||++.++++||+|||+++
T Consensus        86 -~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~  163 (325)
T 3kex_A           86 -GSSLQLVTQYLPLGSLLDHVRQH-RGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVAD  163 (325)
T ss_dssp             -BSSEEEEEECCTTCBSHHHHHSS-GGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGG
T ss_pred             -CCccEEEEEeCCCCCHHHHHHHc-cccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCccc
Confidence             45689999999999999987654 3578999999999999999999999999999999999999999999999999995


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      ......                                                                          
T Consensus       164 ~~~~~~--------------------------------------------------------------------------  169 (325)
T 3kex_A          164 LLPPDD--------------------------------------------------------------------------  169 (325)
T ss_dssp             GSCCCT--------------------------------------------------------------------------
T ss_pred             ccCccc--------------------------------------------------------------------------
Confidence            431100                                                                          


Q ss_pred             ccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHH
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRD  640 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~d  640 (730)
                      .........||+.|+|||++.+..++.++|||||||++|||++ |+.||.+.........+. .....+....++.++.+
T Consensus       170 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  248 (325)
T 3kex_A          170 KQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLE-KGERLAQPQICTIDVYM  248 (325)
T ss_dssp             TCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHH-TTCBCCCCTTBCTTTTH
T ss_pred             ccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHH-cCCCCCCCCcCcHHHHH
Confidence            0001123468889999999999999999999999999999999 999999866544433332 22333444567888999


Q ss_pred             HHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          641 LIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      ||.+||..||.+||++    .++++|
T Consensus       249 li~~~l~~dp~~Rps~----~el~~~  270 (325)
T 3kex_A          249 VMVKCWMIDENIRPTF----KELANE  270 (325)
T ss_dssp             HHHHHTCSCTTTSCCH----HHHHHH
T ss_pred             HHHHHcCCChhhCcCH----HHHHHH
Confidence            9999999999999995    555544

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=2.2e-44  Score=379.04  Aligned_cols=260  Identities=21%  Similarity=0.299  Sum_probs=213.7

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEE-----CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHF  400 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~-----~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f  400 (730)
                      .+..++|++++.||+|+||+||+|++     ..+++.||||++.+...  ......+.+|+.+|+.+ +||||+++++++
T Consensus        23 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  100 (316)
T 2xir_A           23 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT--HSEHRALMSELKILIHIGHHLNVVNLLGAC  100 (316)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             ecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCC--cHHHHHHHHHHHHHHhcccCCCeeeEEEEE
Confidence            35568999999999999999999985     45678999999976532  24456788999999999 799999999998


Q ss_pred             ccc-ceeeEEeeecCCCCccccccccCC--------------CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEE
Q 004790          401 ETD-RFSCLVMEYCPGGDLHTLRQRQPG--------------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVL  465 (730)
Q Consensus       401 ~~~-~~l~LVmEy~~GGsL~~ll~~~~~--------------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNIL  465 (730)
                      ... ..+|+||||++|++|.+++.....              ..+++..++.++.||+.||.|||++||+||||||+|||
T Consensus       101 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil  180 (316)
T 2xir_A          101 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNIL  180 (316)
T ss_dssp             CCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             ecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEE
Confidence            765 459999999999999998876532              22899999999999999999999999999999999999


Q ss_pred             ecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCc
Q 004790          466 VRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRS  545 (730)
Q Consensus       466 l~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (730)
                      ++.++++||+|||++.......                                                          
T Consensus       181 ~~~~~~~kl~Dfg~~~~~~~~~----------------------------------------------------------  202 (316)
T 2xir_A          181 LSEKNVVKICDFGLARDIYKDP----------------------------------------------------------  202 (316)
T ss_dssp             ECGGGCEEECCCGGGSCTTTCT----------------------------------------------------------
T ss_pred             ECCCCCEEECCCccccccccCc----------------------------------------------------------
Confidence            9999999999999985321000                                                          


Q ss_pred             cCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecc
Q 004790          546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQ  624 (730)
Q Consensus       546 ~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~  624 (730)
                                      .........||+.|+|||++.+..++.++|||||||++|||++ |..||.+......+...+..
T Consensus       203 ----------------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~  266 (316)
T 2xir_A          203 ----------------DYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKE  266 (316)
T ss_dssp             ----------------TSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHH
T ss_pred             ----------------cceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHhcc
Confidence                            0011123578999999999999999999999999999999998 99999887655555444444


Q ss_pred             cccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       625 ~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      ....+.....+.++.+||.+||..||.+||+    +.++++|
T Consensus       267 ~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps----~~ell~~  304 (316)
T 2xir_A          267 GTRMRAPDYTTPEMYQTMLDCWHGEPSQRPT----FSELVEH  304 (316)
T ss_dssp             TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CccCCCCCCCCHHHHHHHHHHcCCChhhCcC----HHHHHHH
Confidence            4444444567899999999999999999999    5677664

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=2.5e-44  Score=370.87  Aligned_cols=254  Identities=23%  Similarity=0.302  Sum_probs=211.4

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .+..++|++++.||+|+||.||+|+++. +..||+|++.......    ..+.+|+++|+.++||||+++++++.++..+
T Consensus         4 ~l~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~----~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   78 (268)
T 3sxs_A            4 ELKREEITLLKELGSGQFGVVKLGKWKG-QYDVAVKMIKEGSMSE----DEFFQEAQTMMKLSHPKLVKFYGVCSKEYPI   78 (268)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEETT-TEEEEEEEECBTTBCH----HHHHHHHHHHHHCCCTTBCCEEEEECSSSSE
T ss_pred             EechhheeeeeeeccCCCceEEEEEecC-ceeEEEEEeccCCCcH----HHHHHHHHHHHhCCCCCEeeEEEEEccCCce
Confidence            3566899999999999999999998874 5679999997654332    3478899999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||++|++|.+++... +..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......
T Consensus        79 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~  157 (268)
T 3sxs_A           79 YIVTEYISNGCLLNYLRSH-GKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDD  157 (268)
T ss_dssp             EEEEECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTT
T ss_pred             EEEEEccCCCcHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchh
Confidence            9999999999999988764 346999999999999999999999999999999999999999999999999998542110


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      .                                                                           ....
T Consensus       158 ~---------------------------------------------------------------------------~~~~  162 (268)
T 3sxs_A          158 Q---------------------------------------------------------------------------YVSS  162 (268)
T ss_dssp             C---------------------------------------------------------------------------EEEC
T ss_pred             h---------------------------------------------------------------------------hhcc
Confidence            0                                                                           0001


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ....||+.|+|||++.+..++.++|||||||++|+|++ |+.||.+.........+.... ........+..+.+||.+|
T Consensus       163 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~  241 (268)
T 3sxs_A          163 VGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGH-RLYRPHLASDTIYQIMYSC  241 (268)
T ss_dssp             CSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTC-CCCCCTTSCHHHHHHHHHT
T ss_pred             cCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCC-CCCCCCcChHHHHHHHHHH
Confidence            12357889999999999999999999999999999998 999998876655544443332 2333345789999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcC
Q 004790          646 LVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~H  666 (730)
                      |..||.+||+    +.++++|
T Consensus       242 l~~~p~~Rps----~~~ll~~  258 (268)
T 3sxs_A          242 WHELPEKRPT----FQQLLSS  258 (268)
T ss_dssp             TCSSGGGSCC----HHHHHHH
T ss_pred             cCCChhhCcC----HHHHHHH
Confidence            9999999999    5666654

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=2.6e-44  Score=373.71  Aligned_cols=254  Identities=23%  Similarity=0.310  Sum_probs=209.0

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .+..++|++++.||+|+||.||++++. ++..||+|++.......    ..+.+|+++|+.++||||+++++++.+++.+
T Consensus        20 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~----~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   94 (283)
T 3gen_A           20 EIDPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSE----DEFIEEAKVMMNLSHEKLVQLYGVCTKQRPI   94 (283)
T ss_dssp             BCCGGGEEEEEECC---CEEEEEEEET-TTEEEEEEEECTTSBCH----HHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred             cCCHHHHHhHhhcCCCCCceEEEEEEc-CCCeEEEEEecCCCCCH----HHHHHHHHHHhcCCCCCEeeEEEEEecCCCe
Confidence            466789999999999999999999887 56689999998654332    3477899999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||++|++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++++||+|||++......
T Consensus        95 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  173 (283)
T 3gen_A           95 FIITEYMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD  173 (283)
T ss_dssp             EEEECCCTTCBHHHHHHCG-GGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCH
T ss_pred             EEEEeccCCCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEcccccccccccc
Confidence            9999999999999988763 246999999999999999999999999999999999999999999999999998542100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       174 ---------------------------------------------------------------------------~~~~~  178 (283)
T 3gen_A          174 ---------------------------------------------------------------------------EYTSS  178 (283)
T ss_dssp             ---------------------------------------------------------------------------HHHST
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00001


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ....||+.|+|||++.+..++.++|||||||++|+|++ |+.||.+.........+... .........+..+.+||.+|
T Consensus       179 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~  257 (283)
T 3gen_A          179 VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG-LRLYRPHLASEKVYTIMYSC  257 (283)
T ss_dssp             TSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTT-CCCCCCTTCCHHHHHHHHHT
T ss_pred             cCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcc-cCCCCCCcCCHHHHHHHHHH
Confidence            12357889999999999999999999999999999998 99999887655554444333 33333456789999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcC
Q 004790          646 LVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~H  666 (730)
                      |..||.+||+    +.++++|
T Consensus       258 l~~~p~~Rps----~~~ll~~  274 (283)
T 3gen_A          258 WHEKADERPT----FKILLSN  274 (283)
T ss_dssp             TCSSGGGSCC----HHHHHHH
T ss_pred             ccCChhHCcC----HHHHHHH
Confidence            9999999999    4666653

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=2.1e-44  Score=383.48  Aligned_cols=259  Identities=19%  Similarity=0.282  Sum_probs=217.0

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCe-----EEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRC-----YFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHF  400 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~-----~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f  400 (730)
                      .+..++|++++.||+|+||.||+|++..++.     .||+|++....  .......+.+|+.+|+.+ +||||+++++++
T Consensus        42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~  119 (333)
T 2i1m_A           42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA--HADEKEALMSELKIMSHLGQHENIVNLLGAC  119 (333)
T ss_dssp             BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc--ChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            4567899999999999999999999977664     79999997653  224456788999999999 899999999999


Q ss_pred             cccceeeEEeeecCCCCccccccccC------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC
Q 004790          401 ETDRFSCLVMEYCPGGDLHTLRQRQP------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD  468 (730)
Q Consensus       401 ~~~~~l~LVmEy~~GGsL~~ll~~~~------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~  468 (730)
                      .+++.+|+||||+++|+|.+++....            ...+++..++.++.||+.||.|||++||+||||||+|||++.
T Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~  199 (333)
T 2i1m_A          120 THGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTN  199 (333)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEG
T ss_pred             ecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECC
Confidence            99999999999999999999876531            245799999999999999999999999999999999999999


Q ss_pred             CCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCC
Q 004790          469 DGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELG  548 (730)
Q Consensus       469 ~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (730)
                      ++++||+|||++........                                                            
T Consensus       200 ~~~~kl~Dfg~~~~~~~~~~------------------------------------------------------------  219 (333)
T 2i1m_A          200 GHVAKIGDFGLARDIMNDSN------------------------------------------------------------  219 (333)
T ss_dssp             GGEEEBCCCGGGCCGGGCTT------------------------------------------------------------
T ss_pred             CCeEEECccccccccccccc------------------------------------------------------------
Confidence            99999999999853211000                                                            


Q ss_pred             CCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeeccccc
Q 004790          549 LPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLR  627 (730)
Q Consensus       549 ~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~  627 (730)
                                    ........||+.|+|||++.+..++.++|||||||++|||++ |..||.+......+..++.....
T Consensus       220 --------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~  285 (333)
T 2i1m_A          220 --------------YIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQ  285 (333)
T ss_dssp             --------------SEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHHHHTCC
T ss_pred             --------------eeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHHhcCCC
Confidence                          001112467899999999999999999999999999999998 99999987766666666655555


Q ss_pred             CCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          628 FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       628 ~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .+.....+..+.+||.+||..||.+||++    .++++
T Consensus       286 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~----~~l~~  319 (333)
T 2i1m_A          286 MAQPAFAPKNIYSIMQACWALEPTHRPTF----QQICS  319 (333)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCH----HHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHhccChhhCcCH----HHHHH
Confidence            55556778999999999999999999994    56654

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=1.3e-44  Score=377.25  Aligned_cols=263  Identities=27%  Similarity=0.375  Sum_probs=211.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|.....||+|+||.||+|++..+++.||||++.....   .....+.+|+.+++.++||||++++++|.+.+.+|
T Consensus        19 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   95 (295)
T 2clq_A           19 YEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDS---RYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIK   95 (295)
T ss_dssp             ECBCTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC------HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred             ccccCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCch---HHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEE
Confidence            444556666789999999999999999999999999976532   33456889999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccC-CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-CCceEEecccccccccC
Q 004790          408 LVMEYCPGGDLHTLRQRQP-GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-DGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~-~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-~g~vKL~DFGlA~~~~~  485 (730)
                      +||||+++++|..++.... ...+++..++.++.||+.||.|||++||+||||||+|||++. ++.+||+|||++.....
T Consensus        96 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~  175 (295)
T 2clq_A           96 IFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAG  175 (295)
T ss_dssp             EEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC
T ss_pred             EEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCC
Confidence            9999999999999887642 235678899999999999999999999999999999999987 89999999999854210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      .                                                                            ...
T Consensus       176 ~----------------------------------------------------------------------------~~~  179 (295)
T 2clq_A          176 I----------------------------------------------------------------------------NPC  179 (295)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             C----------------------------------------------------------------------------CCc
Confidence            0                                                                            000


Q ss_pred             ccccccCcccCChhhhccCC--CCCcceeechhHHHHHHhhCCCCCCCCCCccc-eeeeecccccCCCCCCCChhHHHHH
Q 004790          566 SMSFVGTHEYLAPEIIKGEG--HGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT-LFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~--~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~-l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      .....||+.|+|||++.+..  ++.++|||||||++|+|++|+.||........ ................++.++++||
T Consensus       180 ~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  259 (295)
T 2clq_A          180 TETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFI  259 (295)
T ss_dssp             -CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCCCCCTTSCHHHHHHH
T ss_pred             ccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccccccccccccCCHHHHHHH
Confidence            11347899999999998754  88999999999999999999999976443221 1111111112222346789999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      .+||..||++||+    +.++++||||+...
T Consensus       260 ~~~l~~dp~~Rps----~~~ll~~~~~~~~~  286 (295)
T 2clq_A          260 LKCFEPDPDKRAC----ANDLLVDEFLKVSS  286 (295)
T ss_dssp             HHTTCSSTTTSCC----HHHHHTSGGGCC--
T ss_pred             HHHccCChhhCCC----HHHHhcChhhhhcc
Confidence            9999999999999    79999999998643

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=4.1e-44  Score=372.98  Aligned_cols=253  Identities=22%  Similarity=0.321  Sum_probs=206.3

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHH----HHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKK----LTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~----~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      .+..++|++.+.||+|+||+||+|++..+++.||+|++..........    .+.+.+|+++++.++||||+++++++.+
T Consensus        15 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   94 (287)
T 4f0f_A           15 TLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN   94 (287)
T ss_dssp             BCCSTTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETT
T ss_pred             hhhhccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecC
Confidence            356689999999999999999999999999999999986544322222    2578899999999999999999999987


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc--eeecccCCccEEecCCCc-----eEEe
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG--VVYRDLKPENVLVRDDGH-----IMLS  475 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g--IVHRDLKPeNILl~~~g~-----vKL~  475 (730)
                      ..  |+||||+++|+|.+++... ...+++..++.++.||+.||.|||++|  |+||||||+|||++.++.     +||+
T Consensus        95 ~~--~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~  171 (287)
T 4f0f_A           95 PP--RMVMEFVPCGDLYHRLLDK-AHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVA  171 (287)
T ss_dssp             TT--EEEEECCTTCBHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEEC
T ss_pred             CC--eEEEEecCCCCHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeC
Confidence            65  6999999999998876543 357999999999999999999999999  999999999999988776     9999


Q ss_pred             cccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCc
Q 004790          476 DFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLP  555 (730)
Q Consensus       476 DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (730)
                      |||+++...                                                                       
T Consensus       172 Dfg~~~~~~-----------------------------------------------------------------------  180 (287)
T 4f0f_A          172 DFGLSQQSV-----------------------------------------------------------------------  180 (287)
T ss_dssp             CCTTCBCCS-----------------------------------------------------------------------
T ss_pred             CCCcccccc-----------------------------------------------------------------------
Confidence            999984210                                                                       


Q ss_pred             ccccccccccccccccCcccCChhhhc--cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccc--eeeeecccccCCCC
Q 004790          556 ELVAEPTAARSMSFVGTHEYLAPEIIK--GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT--LFNVVGQQLRFPDS  631 (730)
Q Consensus       556 ~~~~e~~~~~~~s~vGT~~Y~APEvl~--g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~--l~~i~~~~~~~p~~  631 (730)
                              ......+||+.|+|||++.  ...++.++|||||||++|||++|+.||.+......  ...+..........
T Consensus       181 --------~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  252 (287)
T 4f0f_A          181 --------HSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIP  252 (287)
T ss_dssp             --------SCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCCCC
T ss_pred             --------ccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCCCCCCC
Confidence                    0011347999999999994  44578899999999999999999999987654433  22222333334444


Q ss_pred             CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          632 PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       632 ~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      ..++.++++||.+||..||.+||++    +++++
T Consensus       253 ~~~~~~l~~li~~~l~~dp~~Rps~----~~ll~  282 (287)
T 4f0f_A          253 EDCPPRLRNVIELCWSGDPKKRPHF----SYIVK  282 (287)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCH----HHHHH
T ss_pred             cccCHHHHHHHHHHhcCChhhCcCH----HHHHH
Confidence            5788999999999999999999995    55543

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.4e-44  Score=389.76  Aligned_cols=258  Identities=22%  Similarity=0.319  Sum_probs=213.1

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCC-------CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSST-------RCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYT  398 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t-------~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~  398 (730)
                      .+..++|++++.||+|+||+||+|++..+       +..||||++....  .......+.+|+++|+.+ +||||+++++
T Consensus        65 ~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpnIv~~~~  142 (382)
T 3tt0_A           65 ELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA--TEKDLSDLISEMEMMKMIGKHKNIINLLG  142 (382)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc--CHHHHHHHHHHHHHHHHhcCCchhhhhee
Confidence            35568899999999999999999997543       3579999997653  335567789999999999 9999999999


Q ss_pred             cccccceeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccE
Q 004790          399 HFETDRFSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENV  464 (730)
Q Consensus       399 ~f~~~~~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNI  464 (730)
                      +|.+++.+|+||||++||+|.+++....              ...+++..++.++.||+.||.|||++||+||||||+||
T Consensus       143 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NI  222 (382)
T 3tt0_A          143 ACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNV  222 (382)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGE
T ss_pred             eeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceE
Confidence            9999999999999999999999887643              24599999999999999999999999999999999999


Q ss_pred             EecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          465 LVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       465 Ll~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                      ||+.++.+||+|||+++......                                                         
T Consensus       223 ll~~~~~~kL~DFG~a~~~~~~~---------------------------------------------------------  245 (382)
T 3tt0_A          223 LVTEDNVMKIADFGLARDIHHID---------------------------------------------------------  245 (382)
T ss_dssp             EECTTCCEEECSCSCCCCSSCCC---------------------------------------------------------
T ss_pred             EEcCCCcEEEcccCccccccccc---------------------------------------------------------
Confidence            99999999999999985321000                                                         


Q ss_pred             ccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeec
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVG  623 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~  623 (730)
                                       .........||+.|+|||++.+..++.++|||||||++|||++ |..||.+....... ..+.
T Consensus       246 -----------------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~-~~~~  307 (382)
T 3tt0_A          246 -----------------YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF-KLLK  307 (382)
T ss_dssp             -----------------TTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHH-HHHH
T ss_pred             -----------------ccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHH-HHHH
Confidence                             0001112367899999999999999999999999999999999 99999886544433 3333


Q ss_pred             ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       624 ~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      ..........++.++.+||.+||..||++||++    .++++
T Consensus       308 ~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~----~ell~  345 (382)
T 3tt0_A          308 EGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTF----KQLVE  345 (382)
T ss_dssp             TTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCH----HHHHH
T ss_pred             cCCCCCCCccCCHHHHHHHHHHcCCChhhCcCH----HHHHH
Confidence            333444456789999999999999999999994    55554

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=2.5e-44  Score=375.50  Aligned_cols=274  Identities=18%  Similarity=0.227  Sum_probs=215.5

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccce
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRF  405 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~  405 (730)
                      .+..++|++++.||+|+||.||+|++..+++.||||++.....     ...+.+|+.+++.+ +|+||+++++++.++..
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~   80 (298)
T 1csn_A            6 NVVGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLH   80 (298)
T ss_dssp             CEETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTE
T ss_pred             cccccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc-----cHHHHHHHHHHHHHhcCCCCCeEEeecCCCce
Confidence            3556889999999999999999999999999999999875432     23467899999999 89999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc-----eEEeccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH-----IMLSDFDLS  480 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~-----vKL~DFGlA  480 (730)
                      .|+||||+ |++|.+++... +..+++..++.++.||+.||.|||++||+||||||+|||++.++.     +||+|||++
T Consensus        81 ~~lv~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~  158 (298)
T 1csn_A           81 NVLVIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMV  158 (298)
T ss_dssp             EEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTC
T ss_pred             eEEEEEec-CCCHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccc
Confidence            99999999 99999988764 346999999999999999999999999999999999999987776     999999999


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ...........                                                                     
T Consensus       159 ~~~~~~~~~~~---------------------------------------------------------------------  169 (298)
T 1csn_A          159 KFYRDPVTKQH---------------------------------------------------------------------  169 (298)
T ss_dssp             EESBCTTTCCB---------------------------------------------------------------------
T ss_pred             ccccccccccc---------------------------------------------------------------------
Confidence            65321100000                                                                     


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc---ceeeeecccccCC---CCCCC
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA---TLFNVVGQQLRFP---DSPAT  634 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~---~l~~i~~~~~~~p---~~~~~  634 (730)
                      .........+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.....   .+..+.......+   ....+
T Consensus       170 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (298)
T 1csn_A          170 IPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGF  249 (298)
T ss_dssp             CCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTS
T ss_pred             ccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhC
Confidence            00011234689999999999999999999999999999999999999998854322   2222222222122   12357


Q ss_pred             ChhHHHHHHhhhcCCCCCcCCchhcH---HHH---HcCCCCCCCCcch
Q 004790          635 SYASRDLIRGLLVKEPQHRLGVKRGA---TEI---KQHPFFEGVNWAL  676 (730)
Q Consensus       635 s~~~~dLI~~lL~~DP~~R~t~~~~a---~el---L~HPfF~~v~w~~  676 (730)
                      +.++++||.+||..||++||++.+..   +++   +...+...++|..
T Consensus       250 ~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~~~~~~~dw~~  297 (298)
T 1csn_A          250 PEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENFDWNL  297 (298)
T ss_dssp             CHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTCCSCSCCGGGC
T ss_pred             cHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCCCCccccCC
Confidence            89999999999999999999964322   222   2345566677754

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=4e-44  Score=372.90  Aligned_cols=256  Identities=25%  Similarity=0.336  Sum_probs=203.6

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCC---CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSST---RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t---~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      ..+..++|++++.||+|+||.||+|++..+   +..||+|++....  .....+.+.+|+.+|+.++||||+++++++. 
T Consensus        10 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-   86 (281)
T 1mp8_A           10 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT--SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-   86 (281)
T ss_dssp             CBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT--SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-
T ss_pred             eEEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCccceEEEEEc-
Confidence            345668999999999999999999998654   4579999986542  3345567889999999999999999999985 


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      ++..|+||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++++||+|||++..
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  165 (281)
T 1mp8_A           87 ENPVWIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRY  165 (281)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC------
T ss_pred             cCccEEEEecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccccc
Confidence            45789999999999999988754 34689999999999999999999999999999999999999999999999999854


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      .....                                                                           
T Consensus       166 ~~~~~---------------------------------------------------------------------------  170 (281)
T 1mp8_A          166 MEDST---------------------------------------------------------------------------  170 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccc---------------------------------------------------------------------------
Confidence            21000                                                                           


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      ........+|+.|+|||++.+..++.++|||||||++|||++ |..||.+....+.+..+... ...+....++.++.+|
T Consensus       171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~l  249 (281)
T 1mp8_A          171 YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENG-ERLPMPPNCPPTLYSL  249 (281)
T ss_dssp             --------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTT-CCCCCCTTCCHHHHHH
T ss_pred             ccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcC-CCCCCCCCCCHHHHHH
Confidence            000112357889999999999999999999999999999996 99999987666555444333 2334456789999999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHc
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      |.+||..||.+||++    .++++
T Consensus       250 i~~~l~~~p~~Rps~----~~l~~  269 (281)
T 1mp8_A          250 MTKCWAYDPSRRPRF----TELKA  269 (281)
T ss_dssp             HHHHTCSSGGGSCCH----HHHHH
T ss_pred             HHHHccCChhhCcCH----HHHHH
Confidence            999999999999994    55554

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=5.9e-45  Score=387.88  Aligned_cols=258  Identities=28%  Similarity=0.366  Sum_probs=214.0

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH---HHHHHHHHHHHHHHhcC--CCCCccccccc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR---KKLTRAQTEREILQLLD--HPFLPTLYTHF  400 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~---~~~~~~~~E~~IL~~L~--HPnIV~L~~~f  400 (730)
                      +....++|++++.||+|+||.||+|++..+++.||||++.+......   .....+.+|+.+|+.+.  ||||++++++|
T Consensus        38 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~  117 (320)
T 3a99_A           38 KEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWF  117 (320)
T ss_dssp             --CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEE
T ss_pred             cCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEE
Confidence            33456889999999999999999999999999999999976543210   11234567999999996  59999999999


Q ss_pred             cccceeeEEeeecCC-CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec-CCCceEEeccc
Q 004790          401 ETDRFSCLVMEYCPG-GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR-DDGHIMLSDFD  478 (730)
Q Consensus       401 ~~~~~l~LVmEy~~G-GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~-~~g~vKL~DFG  478 (730)
                      .++..+|+||||+.+ ++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||
T Consensus       118 ~~~~~~~lv~e~~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg  195 (320)
T 3a99_A          118 ERPDSFVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG  195 (320)
T ss_dssp             ECSSEEEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred             ecCCcEEEEEEcCCCCccHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCc
Confidence            999999999999976 8999887764  5789999999999999999999999999999999999999 78999999999


Q ss_pred             ccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccc
Q 004790          479 LSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELV  558 (730)
Q Consensus       479 lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (730)
                      ++.....                                                                         
T Consensus       196 ~~~~~~~-------------------------------------------------------------------------  202 (320)
T 3a99_A          196 SGALLKD-------------------------------------------------------------------------  202 (320)
T ss_dssp             TCEECCS-------------------------------------------------------------------------
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            9853210                                                                         


Q ss_pred             cccccccccccccCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChh
Q 004790          559 AEPTAARSMSFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYA  637 (730)
Q Consensus       559 ~e~~~~~~~s~vGT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~  637 (730)
                           .......||+.|+|||++.+..+ +.++|||||||++|||++|+.||.....      +......++  ..++.+
T Consensus       203 -----~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~------~~~~~~~~~--~~~~~~  269 (320)
T 3a99_A          203 -----TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE------IIRGQVFFR--QRVSSE  269 (320)
T ss_dssp             -----SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH------HHHCCCCCS--SCCCHH
T ss_pred             -----ccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh------hhccccccc--ccCCHH
Confidence                 00112469999999999988776 6889999999999999999999975421      222222222  457899


Q ss_pred             HHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          638 SRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      +++||.+||..||++||+    ++++++||||+++.+.
T Consensus       270 ~~~li~~~l~~dp~~Rps----~~~ll~hp~~~~~~~~  303 (320)
T 3a99_A          270 CQHLIRWCLALRPSDRPT----FEEIQNHPWMQDVLLP  303 (320)
T ss_dssp             HHHHHHHHTCSSGGGSCC----HHHHHTSGGGSSCCCH
T ss_pred             HHHHHHHHccCChhhCcC----HHHHhcCHhhcCccCc
Confidence            999999999999999999    7999999999987654

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=2.2e-44  Score=382.34  Aligned_cols=257  Identities=21%  Similarity=0.234  Sum_probs=206.8

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ...++|++.+.||+|+||+||+|++. +++.||||++.....   ...+.+.+|+.+|+.++||||+++++++.+++.+|
T Consensus        36 ~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  111 (321)
T 2qkw_B           36 EATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESS---QGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMI  111 (321)
T ss_dssp             CCCCCCSCCCCSCBCSSSEEEEEECT-TCCEEEEEECCSCCS---SHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCE
T ss_pred             HHHhccCccceeecCCCeeEEEEEEC-CCCEEEEEEecccCh---HHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEE
Confidence            45688999999999999999999975 578999999876432   33456889999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccC--CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          408 LVMEYCPGGDLHTLRQRQP--GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~--~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +||||++||+|.+++....  ...+++..++.++.||+.||.|||++||+||||||+|||++.++++||+|||+++....
T Consensus       112 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  191 (321)
T 2qkw_B          112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTE  191 (321)
T ss_dssp             EEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEECSS
T ss_pred             EEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeeccccccccc
Confidence            9999999999999886543  23589999999999999999999999999999999999999999999999999854210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ..                                                                          ....
T Consensus       192 ~~--------------------------------------------------------------------------~~~~  197 (321)
T 2qkw_B          192 LD--------------------------------------------------------------------------QTHL  197 (321)
T ss_dssp             SS--------------------------------------------------------------------------CCCC
T ss_pred             cc--------------------------------------------------------------------------cccc
Confidence            00                                                                          0001


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceee---------------eecccccCCC
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN---------------VVGQQLRFPD  630 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~---------------i~~~~~~~p~  630 (730)
                      .....||+.|+|||++.+..++.++|||||||++|||++|+.||.+.........               ++........
T Consensus       198 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (321)
T 2qkw_B          198 STVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKI  277 (321)
T ss_dssp             BCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCS
T ss_pred             ccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhcccc
Confidence            1234799999999999999999999999999999999999999987654332211               1111111111


Q ss_pred             CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       631 ~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      ....+..+.+||.+||..||++||+    +.++++|
T Consensus       278 ~~~~~~~l~~li~~~l~~dP~~Rps----~~ell~~  309 (321)
T 2qkw_B          278 RPESLRKFGDTAVKCLALSSEDRPS----MGDVLWK  309 (321)
T ss_dssp             CHHHHHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCcccCcC----HHHHHHH
Confidence            1233567889999999999999999    5677654

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=2.4e-44  Score=392.85  Aligned_cols=253  Identities=25%  Similarity=0.320  Sum_probs=211.6

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .+..++|++++.||+|+||.||+|+++.+++.||||+++...  .......+.+|+++|+.++||||+++++++.++..+
T Consensus       110 ~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~  187 (377)
T 3cbl_A          110 VLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL--PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPI  187 (377)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS--CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             EEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCc
Confidence            466789999999999999999999999999999999997542  234455688999999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      ||||||++||+|.+++... +..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....
T Consensus       188 ~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~  266 (377)
T 3cbl_A          188 YIVMELVQGGDFLTFLRTE-GARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADG  266 (377)
T ss_dssp             EEEEECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTS
T ss_pred             EEEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCC
Confidence            9999999999999988754 346899999999999999999999999999999999999999999999999998532100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      .                                                                          .....
T Consensus       267 ~--------------------------------------------------------------------------~~~~~  272 (377)
T 3cbl_A          267 V--------------------------------------------------------------------------YAASG  272 (377)
T ss_dssp             E--------------------------------------------------------------------------EECCS
T ss_pred             c--------------------------------------------------------------------------eeecC
Confidence            0                                                                          00000


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ....+|+.|+|||++.+..++.++|||||||++|||++ |..||.+........ .+....+.+....++.++.+||.+|
T Consensus       273 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~c  351 (377)
T 3cbl_A          273 GLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTRE-FVEKGGRLPCPELCPDAVFRLMEQC  351 (377)
T ss_dssp             SCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHH-HHHTTCCCCCCTTCCHHHHHHHHHH
T ss_pred             CCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHH-HHHcCCCCCCCCCCCHHHHHHHHHH
Confidence            11246788999999999999999999999999999998 999998876544333 2333344555567899999999999


Q ss_pred             hcCCCCCcCCch
Q 004790          646 LVKEPQHRLGVK  657 (730)
Q Consensus       646 L~~DP~~R~t~~  657 (730)
                      |..||++||++.
T Consensus       352 l~~dP~~Rps~~  363 (377)
T 3cbl_A          352 WAYEPGQRPSFS  363 (377)
T ss_dssp             TCSSGGGSCCHH
T ss_pred             cCCCchhCcCHH
Confidence            999999999954

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=3.2e-44  Score=375.72  Aligned_cols=254  Identities=22%  Similarity=0.313  Sum_probs=204.5

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEE----ECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSE----LSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~----~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      .+..++|++++.||+|+||+||+|+    +..+++.||||++....   ....+.+.+|+++|+.++||||+++++++..
T Consensus         6 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   82 (295)
T 3ugc_A            6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST---EEHLRDFEREIEILKSLQHDNIVKYKGVCYS   82 (295)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECH
T ss_pred             cCCHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            3556899999999999999999999    56788999999997543   3445678899999999999999999998854


Q ss_pred             --cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          403 --DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       403 --~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                        ...+|+||||+++|+|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++++||+|||++
T Consensus        83 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~  161 (295)
T 3ugc_A           83 AGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT  161 (295)
T ss_dssp             HHHTSCEEEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSC
T ss_pred             CCCCceEEEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCccc
Confidence              456899999999999999887652 45899999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      .........                                                                       
T Consensus       162 ~~~~~~~~~-----------------------------------------------------------------------  170 (295)
T 3ugc_A          162 KVLPQDKEF-----------------------------------------------------------------------  170 (295)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             ccccCCcce-----------------------------------------------------------------------
Confidence            542110000                                                                       


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc----------c-----ceeeeeccc
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR----------A-----TLFNVVGQQ  625 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~----------~-----~l~~i~~~~  625 (730)
                        ........||..|+|||++.+..++.++|||||||++|||++|..||......          .     .+...+...
T Consensus       171 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (295)
T 3ugc_A          171 --FKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNN  248 (295)
T ss_dssp             -------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTT
T ss_pred             --eeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhcc
Confidence              00011235788899999999999999999999999999999999998653110          0     111122233


Q ss_pred             ccCCCCCCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          626 LRFPDSPATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       626 ~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      ...+....++.++.+||.+||..||++||++.
T Consensus       249 ~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  280 (295)
T 3ugc_A          249 GRLPRPDGCPDEIYMIMTECWNNNVNQRPSFR  280 (295)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             CcCCCCcCcCHHHHHHHHHHcCCChhhCCCHH
Confidence            34555567899999999999999999999953

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=2.5e-44  Score=382.46  Aligned_cols=265  Identities=22%  Similarity=0.286  Sum_probs=194.7

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHH-HHHhcCCCCCccccccccccce
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE-ILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~-IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      .+..++|++++.||+|+||.||+|.++.+++.||||++.....  ......+.+|+. +++.++||||+++++++.+++.
T Consensus        18 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~   95 (327)
T 3aln_A           18 DFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD--EKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGD   95 (327)
T ss_dssp             CCCSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCC--HHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSE
T ss_pred             ccCHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccC--chHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCc
Confidence            3567899999999999999999999999999999999976532  223334455555 6777899999999999999999


Q ss_pred             eeEEeeecCCCCccccccc---cCCCCccHHHHHHhHHHHHHHHHHhHhc-ceeecccCCccEEecCCCceEEecccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQR---QPGKHFSEYAARFYAAEVLLALEYLHML-GVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~---~~~~~lse~~a~~~~~qIl~AL~yLH~~-gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      .|+||||+.| +|..++..   .....+++..++.++.||+.||.|||+. ||+||||||+|||++.++.+||+|||++.
T Consensus        96 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~  174 (327)
T 3aln_A           96 CWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISG  174 (327)
T ss_dssp             EEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSC
T ss_pred             eEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCce
Confidence            9999999965 77666542   1235789999999999999999999998 99999999999999999999999999984


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      .....                                                                           
T Consensus       175 ~~~~~---------------------------------------------------------------------------  179 (327)
T 3aln_A          175 QLVDS---------------------------------------------------------------------------  179 (327)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             ecccc---------------------------------------------------------------------------
Confidence            32100                                                                           


Q ss_pred             ccccccccccCcccCChhhh----ccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeeecccc-cCC--CCCC
Q 004790          562 TAARSMSFVGTHEYLAPEII----KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVGQQL-RFP--DSPA  633 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl----~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~~~~~-~~p--~~~~  633 (730)
                        .......||+.|+|||++    .+..++.++|||||||++|+|++|+.||.+.... ..+..+..... .++  ....
T Consensus       180 --~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (327)
T 3aln_A          180 --IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEERE  257 (327)
T ss_dssp             ----------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCCSCCCCCCCCSSCC
T ss_pred             --cccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcCCCCCCCCccccc
Confidence              001123689999999999    4667899999999999999999999999875432 33333333221 122  2245


Q ss_pred             CChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          634 TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       634 ~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      ++.++.+||.+||..||.+||+    +.++++||||...++.
T Consensus       258 ~~~~l~~li~~~l~~dp~~Rps----~~ell~hp~~~~~~~~  295 (327)
T 3aln_A          258 FSPSFINFVNLCLTKDESKRPK----YKELLKHPFILMYEER  295 (327)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCC----HHHHTTSHHHHHHHHS
T ss_pred             CCHHHHHHHHHHhhCChhhCcC----HHHHHhChHHHHhHhh
Confidence            7899999999999999999999    7999999999876554

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=3.6e-44  Score=378.95  Aligned_cols=263  Identities=26%  Similarity=0.423  Sum_probs=211.2

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC--CCCCccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD--HPFLPTLYTHFET  402 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~--HPnIV~L~~~f~~  402 (730)
                      ...+..++|++++.||+|+||.||++++.. ++.||||++..... .......+.+|+++|+.++  ||||+++++++.+
T Consensus        22 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~   99 (313)
T 3cek_A           22 SMSVKGRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT   99 (313)
T ss_dssp             EEEETTEEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECSSC-CHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEEC
T ss_pred             eeeeccceEEEEEEecCCCCEEEEEEEcCC-CcEEEEEEeccccc-cccchHHHHHHHHHHHhccccCCceEEEEEEeec
Confidence            344666889999999999999999999864 77899999976543 3345677899999999997  5999999999999


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      +..+|+||| +.+++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++ ++.+||+|||++..
T Consensus       100 ~~~~~lv~e-~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~  175 (313)
T 3cek_A          100 DQYIYMVME-CGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQ  175 (313)
T ss_dssp             SSEEEEEEC-CCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCC
T ss_pred             CCEEEEEEe-cCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEE-CCeEEEeecccccc
Confidence            999999999 4589999988765  5789999999999999999999999999999999999996 58999999999853


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      .....                                                                          .
T Consensus       176 ~~~~~--------------------------------------------------------------------------~  181 (313)
T 3cek_A          176 MQPDT--------------------------------------------------------------------------T  181 (313)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCcc--------------------------------------------------------------------------c
Confidence            21000                                                                          0


Q ss_pred             cccccccccCcccCChhhhcc-----------CCCCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeeecccccCCC
Q 004790          563 AARSMSFVGTHEYLAPEIIKG-----------EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVGQQLRFPD  630 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g-----------~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~~~~~~~p~  630 (730)
                      .......+||+.|+|||++.+           ..++.++|||||||++|||++|+.||...... ..+..++........
T Consensus       182 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  261 (313)
T 3cek_A          182 SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEF  261 (313)
T ss_dssp             --------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCC
T ss_pred             cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCC
Confidence            001123479999999999986           46788999999999999999999999865432 222223333333333


Q ss_pred             CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       631 ~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ....+.++++||.+||..||.+||+    +.++++||||+.
T Consensus       262 ~~~~~~~l~~li~~~l~~dp~~Rps----~~ell~h~~~~~  298 (313)
T 3cek_A          262 PDIPEKDLQDVLKCCLKRDPKQRIS----IPELLAHPYVQI  298 (313)
T ss_dssp             CCCSCHHHHHHHHHHTCSSTTTSCC----HHHHHTSHHHHC
T ss_pred             cccchHHHHHHHHHHccCCcccCcC----HHHHhcCccccC
Confidence            4456889999999999999999999    799999999985

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=3.7e-44  Score=382.93  Aligned_cols=257  Identities=21%  Similarity=0.296  Sum_probs=204.4

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEE----EEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYF----AMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~v----AvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      .+..++|++++.||+|+||+||+|++..+++.+    |+|.+....  .......+.+|+.+|+.++||||+++++++.+
T Consensus        11 ~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   88 (327)
T 3poz_A           11 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT--SPKANKEILDEAYVMASVDNPHVCRLLGICLT   88 (327)
T ss_dssp             ECCGGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC---------CHHHHHHHHHHHHHCCBTTBCCEEEEEES
T ss_pred             hcCHHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccccc--CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec
Confidence            355688999999999999999999998887654    777665332  22344678899999999999999999999987


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      +. .++||||+.+|+|.+++... ...+++..++.|+.||+.||.|||++||+||||||+||||+.++++||+|||+++.
T Consensus        89 ~~-~~~v~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~  166 (327)
T 3poz_A           89 ST-VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKL  166 (327)
T ss_dssp             SS-EEEEEECCTTCBHHHHHHHS-TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHH
T ss_pred             CC-eEEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeE
Confidence            65 78999999999999988764 35699999999999999999999999999999999999999999999999999965


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ......                                                                          
T Consensus       167 ~~~~~~--------------------------------------------------------------------------  172 (327)
T 3poz_A          167 LGAEEK--------------------------------------------------------------------------  172 (327)
T ss_dssp             HTTTCC--------------------------------------------------------------------------
T ss_pred             ccCCcc--------------------------------------------------------------------------
Confidence            321000                                                                          


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      ........||+.|+|||++.+..++.++|||||||++|||++ |+.||.+..... +..++......+.....+.++.+|
T Consensus       173 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l  251 (327)
T 3poz_A          173 EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE-ISSILEKGERLPQPPICTIDVYMI  251 (327)
T ss_dssp             -------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG-HHHHHHTTCCCCCCTTBCHHHHHH
T ss_pred             cccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHH-HHHHHHcCCCCCCCccCCHHHHHH
Confidence            001112367899999999999999999999999999999999 999998865543 334444444555666789999999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      |.+||..||.+||++    .++++|
T Consensus       252 i~~~l~~~p~~Rps~----~ell~~  272 (327)
T 3poz_A          252 MVKCWMIDADSRPKF----RELIIE  272 (327)
T ss_dssp             HHHHTCSCGGGSCCH----HHHHHH
T ss_pred             HHHHcCCChhhCCCH----HHHHHH
Confidence            999999999999995    555543

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1e-43  Score=374.47  Aligned_cols=258  Identities=26%  Similarity=0.365  Sum_probs=202.6

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ...++|++++.||+|+||.||+|++..+++.||||++.............+.+|+.+|+.++||||+++++++.+++.+|
T Consensus        29 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~  108 (310)
T 2wqm_A           29 NTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELN  108 (310)
T ss_dssp             SSGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred             ccccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEE
Confidence            45678999999999999999999999999999999998655455566677899999999999999999999999999999


Q ss_pred             EEeeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          408 LVMEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +||||+.+++|.+++...  ....+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++.....
T Consensus       109 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~  188 (310)
T 2wqm_A          109 IVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  188 (310)
T ss_dssp             EEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC--------
T ss_pred             EEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecC
Confidence            999999999999887642  235689999999999999999999999999999999999999999999999999843210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      .                                                                            ...
T Consensus       189 ~----------------------------------------------------------------------------~~~  192 (310)
T 2wqm_A          189 K----------------------------------------------------------------------------TTA  192 (310)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             C----------------------------------------------------------------------------Ccc
Confidence            0                                                                            001


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc-ce-eeeecccccCCCCCCCChhHHHHHH
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA-TL-FNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~-~l-~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      .....||+.|+|||++.+..++.++|||||||++|+|++|+.||.+..... .+ ..+............++.++++||.
T Consensus       193 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  272 (310)
T 2wqm_A          193 AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVN  272 (310)
T ss_dssp             ------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSCCCCTTTSCHHHHHHHH
T ss_pred             ccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCCCCcccccCHHHHHHHH
Confidence            123478999999999999999999999999999999999999998653221 11 1122222222223467889999999


Q ss_pred             hhhcCCCCCcCCchhcHHHHHc
Q 004790          644 GLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       644 ~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      +||..||.+||++    .++++
T Consensus       273 ~~l~~dp~~Rps~----~~il~  290 (310)
T 2wqm_A          273 MCINPDPEKRPDV----TYVYD  290 (310)
T ss_dssp             HHTCSSGGGSCCH----HHHHH
T ss_pred             HHcCCChhhCCCH----HHHHH
Confidence            9999999999994    56554

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.4e-44  Score=378.53  Aligned_cols=254  Identities=28%  Similarity=0.393  Sum_probs=203.5

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH---HHHHHHHHHHHHHHhc----CCCCCccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR---KKLTRAQTEREILQLL----DHPFLPTLYTHF  400 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~---~~~~~~~~E~~IL~~L----~HPnIV~L~~~f  400 (730)
                      ...++|++++.||+|+||.||+|++..+++.||||++........   .....+.+|+.+++.+    +||||++++++|
T Consensus        28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~  107 (312)
T 2iwi_A           28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF  107 (312)
T ss_dssp             -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred             hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence            445789999999999999999999999999999999976543321   1223456799999998    899999999999


Q ss_pred             cccceeeEEeee-cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec-CCCceEEeccc
Q 004790          401 ETDRFSCLVMEY-CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR-DDGHIMLSDFD  478 (730)
Q Consensus       401 ~~~~~l~LVmEy-~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~-~~g~vKL~DFG  478 (730)
                      .+.+..|+|||| +.+++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||
T Consensus       108 ~~~~~~~~v~e~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg  185 (312)
T 2iwi_A          108 ETQEGFMLVLERPLPAQDLFDYITEK--GPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFG  185 (312)
T ss_dssp             -----CEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCCS
T ss_pred             ecCCeEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEcc
Confidence            999999999999 7899999988764  4699999999999999999999999999999999999999 78999999999


Q ss_pred             ccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccc
Q 004790          479 LSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELV  558 (730)
Q Consensus       479 lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (730)
                      ++.....                                                                         
T Consensus       186 ~~~~~~~-------------------------------------------------------------------------  192 (312)
T 2iwi_A          186 SGALLHD-------------------------------------------------------------------------  192 (312)
T ss_dssp             SCEECCS-------------------------------------------------------------------------
T ss_pred             hhhhccc-------------------------------------------------------------------------
Confidence            9853210                                                                         


Q ss_pred             cccccccccccccCcccCChhhhccCCCC-CcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChh
Q 004790          559 AEPTAARSMSFVGTHEYLAPEIIKGEGHG-SAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYA  637 (730)
Q Consensus       559 ~e~~~~~~~s~vGT~~Y~APEvl~g~~~~-~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~  637 (730)
                           .......||+.|+|||++.+..+. .++|||||||++|||++|+.||.+..      .+......++  ..++.+
T Consensus       193 -----~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~~~~--~~~~~~  259 (312)
T 2iwi_A          193 -----EPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ------EILEAELHFP--AHVSPD  259 (312)
T ss_dssp             -----SCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHHTCCCCC--TTSCHH
T ss_pred             -----CcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH------HHhhhccCCc--ccCCHH
Confidence                 001134689999999999887764 58999999999999999999997532      1222333333  457899


Q ss_pred             HHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          638 SRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      +++||.+||..||++||+    ++++++||||+...
T Consensus       260 ~~~li~~~l~~~p~~Rps----~~e~l~~~~~~~~~  291 (312)
T 2iwi_A          260 CCALIRRCLAPKPSSRPS----LEEILLDPWMQTPA  291 (312)
T ss_dssp             HHHHHHHHTCSSTTTSCC----HHHHHHSTTTCC--
T ss_pred             HHHHHHHHccCChhhCcC----HHHHhcChhhcCch
Confidence            999999999999999999    79999999999743

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=4.7e-44  Score=372.39  Aligned_cols=248  Identities=19%  Similarity=0.230  Sum_probs=203.8

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCC-------eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTR-------CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF  400 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~-------~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f  400 (730)
                      +..++|++++.||+|+||+||+|++..++       ..||+|++.+...   ...+.+.+|+.+|+.++||||+++++++
T Consensus         5 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~   81 (289)
T 4fvq_A            5 IRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHR---NYSESFFEAASMMSKLSHKHLVLNYGVC   81 (289)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGG---GGHHHHHHHHHHHHTSCCTTBCCEEEEE
T ss_pred             echhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccH---HHHHHHHHHHHHHHhCCCCCEeEEEEEE
Confidence            45688999999999999999999998776       4699999976543   2345688999999999999999999999


Q ss_pred             cccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc--------e
Q 004790          401 ETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH--------I  472 (730)
Q Consensus       401 ~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~--------v  472 (730)
                      .+++..|+||||++||+|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.        +
T Consensus        82 ~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~  160 (289)
T 4fvq_A           82 VCGDENILVQEFVKFGSLDTYLKKN-KNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFI  160 (289)
T ss_dssp             CCTTCCEEEEECCTTCBHHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEE
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCccccccccee
Confidence            9999999999999999999988764 244899999999999999999999999999999999999998887        9


Q ss_pred             EEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCC
Q 004790          473 MLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSS  552 (730)
Q Consensus       473 KL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (730)
                      ||+|||++....                                                                    
T Consensus       161 kl~Dfg~~~~~~--------------------------------------------------------------------  172 (289)
T 4fvq_A          161 KLSDPGISITVL--------------------------------------------------------------------  172 (289)
T ss_dssp             EECCCCSCTTTS--------------------------------------------------------------------
T ss_pred             eeccCccccccc--------------------------------------------------------------------
Confidence            999999873210                                                                    


Q ss_pred             CCcccccccccccccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCC
Q 004790          553 TLPELVAEPTAARSMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS  631 (730)
Q Consensus       553 ~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~  631 (730)
                                  ......||+.|+|||++.+ ..++.++|||||||++|||++|..|+...........+......++  
T Consensus       173 ------------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--  238 (289)
T 4fvq_A          173 ------------PKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLP--  238 (289)
T ss_dssp             ------------CHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCC--
T ss_pred             ------------CccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhccCCCC--
Confidence                        0112468999999999998 6689999999999999999995554444333333333333333333  


Q ss_pred             CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          632 PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       632 ~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      ...+.++++||.+||..||.+||+    +.++++
T Consensus       239 ~~~~~~l~~li~~~l~~dp~~Rps----~~~ll~  268 (289)
T 4fvq_A          239 APKAAELANLINNCMDYEPDHRPS----FRAIIR  268 (289)
T ss_dssp             CCSSCTTHHHHHHHSCSSGGGSCC----HHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCChhHCcC----HHHHHH
Confidence            345788999999999999999999    566665

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=8.3e-44  Score=376.82  Aligned_cols=249  Identities=25%  Similarity=0.310  Sum_probs=202.2

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||.||+|++..+++.||||++.+...........+.+|+.+++.++||||+++++++.+++.+|+|
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            57899999999999999999999999999999999876655556667899999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||++|++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......   
T Consensus       113 ~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~---  187 (309)
T 2h34_A          113 MRLINGVDLAAMLRRQ--GPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDE---  187 (309)
T ss_dssp             EECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC----------
T ss_pred             EEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCcccccc---
Confidence            9999999999988765  56999999999999999999999999999999999999999999999999998432100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              ........
T Consensus       188 ------------------------------------------------------------------------~~~~~~~~  195 (309)
T 2h34_A          188 ------------------------------------------------------------------------KLTQLGNT  195 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    00011234


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccC--CCCCCCChhHHHHHHhhhc
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF--PDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~--p~~~~~s~~~~dLI~~lL~  647 (730)
                      +||+.|+|||++.+..++.++|||||||++|||++|+.||.+.... .+...+......  .....++.++++||.+||.
T Consensus       196 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  274 (309)
T 2h34_A          196 VGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS-VMGAHINQAIPRPSTVRPGIPVAFDAVIARGMA  274 (309)
T ss_dssp             -CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH-HHHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTC
T ss_pred             CCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH-HHHHHhccCCCCccccCCCCCHHHHHHHHHhcc
Confidence            7999999999999999999999999999999999999999875433 222222222211  1235678899999999999


Q ss_pred             CCCCCcC-Cc
Q 004790          648 KEPQHRL-GV  656 (730)
Q Consensus       648 ~DP~~R~-t~  656 (730)
                      .||.+|| ++
T Consensus       275 ~dP~~Rp~s~  284 (309)
T 2h34_A          275 KNPEDRYVTC  284 (309)
T ss_dssp             SSGGGSCSSH
T ss_pred             CCHHHHHHhH
Confidence            9999999 53

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=8e-44  Score=375.13  Aligned_cols=262  Identities=24%  Similarity=0.361  Sum_probs=200.2

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      ....++|++++.||+|+||.||+|+++.+++.||||++...... ......+.++..+++.++||||+++++++.++..+
T Consensus        21 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~   99 (318)
T 2dyl_A           21 QAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNK-EENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDV   99 (318)
T ss_dssp             ECCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCH-HHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             hhhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccc-hHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcE
Confidence            34568999999999999999999999999999999999765432 23334455566678889999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhc-ceeecccCCccEEecCCCceEEecccccccccC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML-GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~-gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      |+||||+ ++.+..++... ...+++..++.++.||+.||.|||++ ||+||||||+|||++.++++||+|||++.....
T Consensus       100 ~lv~e~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  177 (318)
T 2dyl_A          100 FIAMELM-GTCAEKLKKRM-QGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVD  177 (318)
T ss_dssp             EEEECCC-SEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred             EEEEecc-CCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccC
Confidence            9999999 66665555432 35799999999999999999999995 999999999999999999999999999843210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      .                                                                             ..
T Consensus       178 ~-----------------------------------------------------------------------------~~  180 (318)
T 2dyl_A          178 D-----------------------------------------------------------------------------KA  180 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             C-----------------------------------------------------------------------------cc
Confidence            0                                                                             00


Q ss_pred             ccccccCcccCChhhhc-----cCCCCCcceeechhHHHHHHhhCCCCCCCCCCc-cceeeeeccc-ccCCCCCCCChhH
Q 004790          566 SMSFVGTHEYLAPEIIK-----GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR-ATLFNVVGQQ-LRFPDSPATSYAS  638 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~-----g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~-~~l~~i~~~~-~~~p~~~~~s~~~  638 (730)
                      .....||+.|+|||++.     +..++.++|||||||++|||++|+.||...... ..+..+.... ..++....++.++
T Consensus       181 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (318)
T 2dyl_A          181 KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDF  260 (318)
T ss_dssp             ------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCCSSSCCCHHH
T ss_pred             ccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCCCCccCCCCHHH
Confidence            11246899999999995     456889999999999999999999999874432 2233333222 2334445678999


Q ss_pred             HHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          639 RDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       639 ~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ++||.+||..||.+||+    ++++++||||+..
T Consensus       261 ~~li~~~l~~dp~~Rps----~~~ll~h~~~~~~  290 (318)
T 2dyl_A          261 QSFVKDCLTKDHRKRPK----YNKLLEHSFIKRY  290 (318)
T ss_dssp             HHHHHHHTCSCTTTSCC----HHHHTTSHHHHHH
T ss_pred             HHHHHHHccCChhHCcC----HHHHhhCHHHHhc
Confidence            99999999999999999    7999999999864

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.3e-43  Score=364.42  Aligned_cols=253  Identities=22%  Similarity=0.330  Sum_probs=210.6

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l  406 (730)
                      .+..++|++++.||+|+||.||+|++. ++..||+|++.......    +.+.+|+++++.++||||+++++++.+++.+
T Consensus         4 ~i~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   78 (267)
T 3t9t_A            4 VIDPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSE----EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPI   78 (267)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTTBCH----HHHHHHHHHHHTCCCTTBCCEEEEECSSSSC
T ss_pred             EEchhheeeeeEecCCCceeEEEEEec-CCCeEEEEEccccCCCH----HHHHHHHHHHHhCCCCCEeeEEEEEccCCCe
Confidence            456689999999999999999999997 56689999998754322    4578899999999999999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||++|++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......
T Consensus        79 ~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~  157 (267)
T 3t9t_A           79 CLVTEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD  157 (267)
T ss_dssp             EEEECCCTTCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCH
T ss_pred             EEEEeCCCCCcHHHHHhhC-cccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEcccccccccccc
Confidence            9999999999999988764 346899999999999999999999999999999999999999999999999998532100


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                 .....
T Consensus       158 ---------------------------------------------------------------------------~~~~~  162 (267)
T 3t9t_A          158 ---------------------------------------------------------------------------QYTSS  162 (267)
T ss_dssp             ---------------------------------------------------------------------------HHHST
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00011


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ....||+.|+|||++.+..++.++|||||||++|+|++ |+.||.+.........+... .........+..+.+||.+|
T Consensus       163 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~li~~~  241 (267)
T 3t9t_A          163 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTG-FRLYKPRLASTHVYQIMNHC  241 (267)
T ss_dssp             TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTT-CCCCCCTTSCHHHHHHHHHH
T ss_pred             ccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcC-CcCCCCccCcHHHHHHHHHH
Confidence            12367889999999999999999999999999999999 99999886655444444333 22333456789999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHc
Q 004790          646 LVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~  665 (730)
                      |..||.+||++    .++++
T Consensus       242 l~~~p~~Rps~----~~ll~  257 (267)
T 3t9t_A          242 WRERPEDRPAF----SRLLR  257 (267)
T ss_dssp             TCSSGGGSCCH----HHHHH
T ss_pred             ccCChhhCcCH----HHHHH
Confidence            99999999994    56554

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=1.7e-43  Score=368.33  Aligned_cols=273  Identities=16%  Similarity=0.239  Sum_probs=209.5

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc-cccceeeE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF-ETDRFSCL  408 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f-~~~~~l~L  408 (730)
                      .++|++++.||+|+||+||+|++..+++.||||++.....     ...+.+|+++++.++|++++..+..+ ..+...|+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l   82 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM   82 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC--------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc-----chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEE
Confidence            3689999999999999999999999999999998765432     23467899999999888777666554 67788999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe---cCCCceEEecccccccccC
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV---RDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl---~~~g~vKL~DFGlA~~~~~  485 (730)
                      ||||+ +++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||+   +.++.+||+|||++.....
T Consensus        83 v~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~  160 (296)
T 4hgt_A           83 VMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD  160 (296)
T ss_dssp             EEECC-CCBHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred             EEEcc-CCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccC
Confidence            99999 99999988743 2469999999999999999999999999999999999999   7889999999999865321


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ......                                                                     .....
T Consensus       161 ~~~~~~---------------------------------------------------------------------~~~~~  171 (296)
T 4hgt_A          161 ARTHQH---------------------------------------------------------------------IPYRE  171 (296)
T ss_dssp             TTTCCB---------------------------------------------------------------------CCCCC
T ss_pred             cccCcc---------------------------------------------------------------------CCCCc
Confidence            100000                                                                     00001


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccc---eeeeecccccCCC---CCCCChhHH
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT---LFNVVGQQLRFPD---SPATSYASR  639 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~---l~~i~~~~~~~p~---~~~~s~~~~  639 (730)
                      .....||+.|+|||++.+..++.++|||||||++|+|++|+.||.+......   +..+.......+.   ...++.+++
T Consensus       172 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  251 (296)
T 4hgt_A          172 NKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFA  251 (296)
T ss_dssp             SCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHH
T ss_pred             ccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHH
Confidence            2245899999999999999999999999999999999999999987544322   2222233333331   145688999


Q ss_pred             HHHHhhhcCCCCCcCCchhcHH---HHH---cCCCCCCCCcchhc
Q 004790          640 DLIRGLLVKEPQHRLGVKRGAT---EIK---QHPFFEGVNWALIR  678 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~~~a~---elL---~HPfF~~v~w~~~r  678 (730)
                      +||.+||..||++||++.+..+   +++   ...|...++|..++
T Consensus       252 ~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~~~~~~~dw~~~~  296 (296)
T 4hgt_A          252 TYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLK  296 (296)
T ss_dssp             HHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHTCCTTCCCGGGGCC
T ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCccCccchhhcC
Confidence            9999999999999999643222   222   25666778887653

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=7.2e-44  Score=386.19  Aligned_cols=278  Identities=16%  Similarity=0.204  Sum_probs=207.4

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCC-----CeEEEEEEeehhhhhhHHHH--------HHHHHHHHHHHhcCCCCCcc
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSST-----RCYFAMKVMDKASLASRKKL--------TRAQTEREILQLLDHPFLPT  395 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t-----~~~vAvKvi~k~~~~~~~~~--------~~~~~E~~IL~~L~HPnIV~  395 (730)
                      ..++|++++.||+|+||+||+|++..+     ++.||||++...........        .....|+.+++.++||||++
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~  112 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK  112 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence            456899999999999999999999765     57899999876532111111        12334566677889999999


Q ss_pred             cccccccc----ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec--CC
Q 004790          396 LYTHFETD----RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR--DD  469 (730)
Q Consensus       396 L~~~f~~~----~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~--~~  469 (730)
                      +++++...    ..+||||||| |++|.+++... ...+++..++.|+.||+.||.|||++||+||||||+||||+  .+
T Consensus       113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~  190 (364)
T 3op5_A          113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN-AKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNP  190 (364)
T ss_dssp             EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCT
T ss_pred             EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCC
Confidence            99998764    5689999999 99999988764 35799999999999999999999999999999999999999  88


Q ss_pred             CceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCC
Q 004790          470 GHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGL  549 (730)
Q Consensus       470 g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (730)
                      +++||+|||+++.+........                                                          
T Consensus       191 ~~~kl~DFG~a~~~~~~~~~~~----------------------------------------------------------  212 (364)
T 3op5_A          191 DQVYLVDYGLAYRYCPEGVHKA----------------------------------------------------------  212 (364)
T ss_dssp             TCEEECCCTTCEESSGGGCCCC----------------------------------------------------------
T ss_pred             CeEEEEECCcceecccCCcccc----------------------------------------------------------
Confidence            9999999999965321100000                                                          


Q ss_pred             CCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc---
Q 004790          550 PSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL---  626 (730)
Q Consensus       550 ~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~---  626 (730)
                                 ........++||+.|+|||++.+..++.++|||||||+||||++|+.||.+......+........   
T Consensus       213 -----------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~  281 (364)
T 3op5_A          213 -----------YAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYREN  281 (364)
T ss_dssp             -----------SSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHC
T ss_pred             -----------cccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhh
Confidence                       000111345799999999999999999999999999999999999999987544333222111110   


Q ss_pred             -------cCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcH---HHHH---cCCCCCCCCcchhc
Q 004790          627 -------RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGA---TEIK---QHPFFEGVNWALIR  678 (730)
Q Consensus       627 -------~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a---~elL---~HPfF~~v~w~~~r  678 (730)
                             .++ ...++.++.+||..||..||.+||++.+..   .+++   ...+...++|....
T Consensus       282 ~~~~~~~~~~-~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~~~~~~~~dw~~~~  345 (364)
T 3op5_A          282 IASLMDKCFP-AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDLSVVE  345 (364)
T ss_dssp             HHHHHHHHSC-TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCCCCCCCC----
T ss_pred             HHHHHHHhcc-cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcCCCcCCccceEecc
Confidence                   011 145689999999999999999999974322   2222   34667778887654

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=3.3e-43  Score=393.33  Aligned_cols=249  Identities=22%  Similarity=0.310  Sum_probs=210.3

Q ss_pred             hcCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          323 ARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       323 ~~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      ...+.+..++|++++.||+|+||.||+|++.  ++.||||+++...     ..+.+.+|+.+|+.++||||+++++++..
T Consensus       185 ~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~--~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~  257 (450)
T 1k9a_A          185 RSGWALNMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVE  257 (450)
T ss_dssp             HTTCBCCGGGEEEEEEEEECSSEEEEEEEET--TEEEEEEEESSCT-----TSHHHHHHHHHHHTCCCTTBCCEEEEEEC
T ss_pred             ccccccChHHeEEEeeecCcCCeeEEEEEec--CCeEEEEEeCCch-----HHHHHHHHHHHHHhccCCCEEEEEEEEEc
Confidence            3456678899999999999999999999986  5689999997653     23457899999999999999999998765


Q ss_pred             c-ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          403 D-RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       403 ~-~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      . ..+|||||||++|+|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++.++++||+|||+++
T Consensus       258 ~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~  337 (450)
T 1k9a_A          258 EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTK  337 (450)
T ss_dssp             TTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             CCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCcc
Confidence            4 479999999999999999887654558999999999999999999999999999999999999999999999999985


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      ....                                                                            
T Consensus       338 ~~~~----------------------------------------------------------------------------  341 (450)
T 1k9a_A          338 EASS----------------------------------------------------------------------------  341 (450)
T ss_dssp             ECC-----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            3100                                                                            


Q ss_pred             ccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHH
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRD  640 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~d  640 (730)
                         ......+|+.|+|||++.+..++.++|||||||+||||++ |+.||.+....+.+..+. ...+.+....++.++.+
T Consensus       342 ---~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~-~~~~~~~p~~~~~~l~~  417 (450)
T 1k9a_A          342 ---TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVE-KGYKMDAPDGCPPAVYD  417 (450)
T ss_dssp             --------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHH-TTCCCCCCTTCCHHHHH
T ss_pred             ---cccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCCcCCHHHHH
Confidence               0011256889999999999999999999999999999998 999999876665554443 33445555678999999


Q ss_pred             HHHhhhcCCCCCcCCchh
Q 004790          641 LIRGLLVKEPQHRLGVKR  658 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~~  658 (730)
                      ||.+||..||.+||++.+
T Consensus       418 li~~cl~~dp~~Rpt~~~  435 (450)
T 1k9a_A          418 VMKNCWHLDAATRPTFLQ  435 (450)
T ss_dssp             HHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHcCCChhHCcCHHH
Confidence            999999999999999643

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.4e-43  Score=401.47  Aligned_cols=252  Identities=19%  Similarity=0.294  Sum_probs=214.8

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      +.+...+|++.+.||+|+||.||+|+++.++..||||+++.....    .+.+.+|+.+|+.++||||+++++++.++..
T Consensus       215 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~  290 (495)
T 1opk_A          215 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME----VEEFLKEAAVMKEIKHPNLVQLLGVCTREPP  290 (495)
T ss_dssp             CBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSC----HHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             cccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccc----hHHHHHHHHHHHhcCCCCEeeEEEEEecCCc
Confidence            345668899999999999999999999999999999999765432    3567899999999999999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|||||||++|+|.+++.......+++..++.++.||+.||+|||++|||||||||+||||+.++.+||+|||+++....
T Consensus       291 ~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  370 (495)
T 1opk_A          291 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTG  370 (495)
T ss_dssp             CEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTT
T ss_pred             EEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccC
Confidence            99999999999999998876556799999999999999999999999999999999999999999999999999854210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ..                                                                           ...
T Consensus       371 ~~---------------------------------------------------------------------------~~~  375 (495)
T 1opk_A          371 DT---------------------------------------------------------------------------YTA  375 (495)
T ss_dssp             CC---------------------------------------------------------------------------EEC
T ss_pred             Cc---------------------------------------------------------------------------eee
Confidence            00                                                                           000


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~  644 (730)
                      .....+|+.|+|||++.+..++.++|||||||+||||++ |..||.+.+....+ ..+....+.+....++.++.+||.+
T Consensus       376 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~li~~  454 (495)
T 1opk_A          376 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY-ELLEKDYRMERPEGCPEKVYELMRA  454 (495)
T ss_dssp             CTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH-HHHHTTCCCCCCTTCCHHHHHHHHH
T ss_pred             cCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHH-HHHHcCCCCCCCCCCCHHHHHHHHH
Confidence            112356889999999999999999999999999999998 99999987654433 3344445555566789999999999


Q ss_pred             hhcCCCCCcCCch
Q 004790          645 LLVKEPQHRLGVK  657 (730)
Q Consensus       645 lL~~DP~~R~t~~  657 (730)
                      ||..||.+||++.
T Consensus       455 cl~~dP~~RPs~~  467 (495)
T 1opk_A          455 CWQWNPSDRPSFA  467 (495)
T ss_dssp             HTCSSGGGSCCHH
T ss_pred             HcCcChhHCcCHH
Confidence            9999999999954

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=1.2e-43  Score=378.05  Aligned_cols=248  Identities=22%  Similarity=0.267  Sum_probs=195.2

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc--
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR--  404 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~--  404 (730)
                      .+..++|++++.||+|+||+||+|++.  ++.||||++.....    ......+|+.+|+.++||||+++++++.+..  
T Consensus        20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   93 (322)
T 3soc_A           20 YFQSMPLQLLEVKARGRFGCVWKAQLL--NEYVAVKIFPIQDK----QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSV   93 (322)
T ss_dssp             EETTEEEEEEEEEECSTTCEEEEEEET--TEEEEEEEECGGGH----HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSS
T ss_pred             ccchhhchhhheecccCceEEEEEEEC--CCEEEEEEeecCch----HHHHHHHHHHHHhcCCCCCchhhcceeccCCCC
Confidence            466789999999999999999999886  67899999976532    2234556888999999999999999998744  


Q ss_pred             --eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhc----------ceeecccCCccEEecCCCce
Q 004790          405 --FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML----------GVVYRDLKPENVLVRDDGHI  472 (730)
Q Consensus       405 --~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~----------gIVHRDLKPeNILl~~~g~v  472 (730)
                        .+|+|||||++|+|.+++...   .+++..++.++.||+.||.|||++          ||+||||||+|||++.++++
T Consensus        94 ~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~  170 (322)
T 3soc_A           94 DVDLWLITAFHEKGSLSDFLKAN---VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTA  170 (322)
T ss_dssp             SEEEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCE
T ss_pred             CceEEEEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeE
Confidence              479999999999999998764   599999999999999999999999          99999999999999999999


Q ss_pred             EEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCC
Q 004790          473 MLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSS  552 (730)
Q Consensus       473 KL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (730)
                      ||+|||+++.......                                                                
T Consensus       171 kL~DFg~a~~~~~~~~----------------------------------------------------------------  186 (322)
T 3soc_A          171 CIADFGLALKFEAGKS----------------------------------------------------------------  186 (322)
T ss_dssp             EECCCTTCEEECTTSC----------------------------------------------------------------
T ss_pred             EEccCCcccccccccC----------------------------------------------------------------
Confidence            9999999864321000                                                                


Q ss_pred             CCcccccccccccccccccCcccCChhhhccC-----CCCCcceeechhHHHHHHhhCCCCCCCCCCccceee-------
Q 004790          553 TLPELVAEPTAARSMSFVGTHEYLAPEIIKGE-----GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN-------  620 (730)
Q Consensus       553 ~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~-----~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~-------  620 (730)
                                .......+||+.|+|||++.+.     .++.++|||||||++|||++|+.||.+......+..       
T Consensus       187 ----------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~  256 (322)
T 3soc_A          187 ----------AGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQH  256 (322)
T ss_dssp             ----------CCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSS
T ss_pred             ----------ccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccC
Confidence                      0011235799999999999874     456688999999999999999999987644322110       


Q ss_pred             --------eecccccCCCCC------CCChhHHHHHHhhhcCCCCCcCCch
Q 004790          621 --------VVGQQLRFPDSP------ATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       621 --------i~~~~~~~p~~~------~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                              .+......|...      ..+.++.+||.+||..||++||++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~  307 (322)
T 3soc_A          257 PSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAG  307 (322)
T ss_dssp             CCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHH
Confidence                    000111111111      1134589999999999999999954

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.9e-43  Score=364.65  Aligned_cols=252  Identities=18%  Similarity=0.218  Sum_probs=202.8

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCe---EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccccee-e
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRC---YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFS-C  407 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~---~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l-~  407 (730)
                      .|++.+.||+|+||+||+|++..++.   .||+|++.+..  .....+.+.+|+.+|+.++||||+++++++.+.+.. |
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   99 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRIT--EMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPH   99 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCC--SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccc--cHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcE
Confidence            57778999999999999999755544   79999986532  334567788999999999999999999999876655 9


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+.+|+|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++++||+|||++.......
T Consensus       100 ~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~  178 (298)
T 3pls_A          100 VLLPYMCHGDLLQFIRSP-QRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDRE  178 (298)
T ss_dssp             EEECCCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGG
T ss_pred             EEEecccCCCHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCc
Confidence            999999999999988753 3578999999999999999999999999999999999999999999999999985321100


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                      ..                                                                        ......
T Consensus       179 ~~------------------------------------------------------------------------~~~~~~  186 (298)
T 3pls_A          179 YY------------------------------------------------------------------------SVQQHR  186 (298)
T ss_dssp             GG------------------------------------------------------------------------CSCCSS
T ss_pred             cc------------------------------------------------------------------------ccccCc
Confidence            00                                                                        000112


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      ...||+.|+|||++.+..++.++|||||||++|+|++|..||........+...+......+....++.++.+||.+||.
T Consensus       187 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  266 (298)
T 3pls_A          187 HARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQPEYCPDSLYQVMQQCWE  266 (298)
T ss_dssp             CTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTC
T ss_pred             CCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcc
Confidence            34689999999999999999999999999999999995555444334334434344444455556789999999999999


Q ss_pred             CCCCCcCCchh
Q 004790          648 KEPQHRLGVKR  658 (730)
Q Consensus       648 ~DP~~R~t~~~  658 (730)
                      .||.+||++++
T Consensus       267 ~~p~~Rps~~~  277 (298)
T 3pls_A          267 ADPAVRPTFRV  277 (298)
T ss_dssp             SSGGGSCCHHH
T ss_pred             CChhhCcCHHH
Confidence            99999999543

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=5.4e-44  Score=371.74  Aligned_cols=260  Identities=23%  Similarity=0.332  Sum_probs=205.7

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECC-CC--eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSS-TR--CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~-t~--~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      .+..++|++++.||+|+||+||+|++.. ++  ..||||+++..........+.+.+|+++++.++||||+++++++.++
T Consensus        14 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   93 (291)
T 1u46_A           14 LIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP   93 (291)
T ss_dssp             ECCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             ccchhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccC
Confidence            3556889999999999999999998643 33  36899999776544445667889999999999999999999999876


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      . .|+||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...
T Consensus        94 ~-~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~  171 (291)
T 1u46_A           94 P-MKMVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL  171 (291)
T ss_dssp             S-CEEEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred             C-ceeeEecccCCCHHHHHHhc-cCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEccccccccc
Confidence            5 88999999999999887654 246899999999999999999999999999999999999999999999999998543


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      .....                                                                         ..
T Consensus       172 ~~~~~-------------------------------------------------------------------------~~  178 (291)
T 1u46_A          172 PQNDD-------------------------------------------------------------------------HY  178 (291)
T ss_dssp             CC-CC-------------------------------------------------------------------------EE
T ss_pred             ccccc-------------------------------------------------------------------------ch
Confidence            11000                                                                         00


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      .......||+.|+|||++.+..++.++|||||||++|+|++ |+.||.+.+....+..+......++....++.++++||
T Consensus       179 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  258 (291)
T 1u46_A          179 VMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVM  258 (291)
T ss_dssp             EC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHH
T ss_pred             hhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCCCCCCcCcCHHHHHHH
Confidence            01113467889999999999989999999999999999999 99999987766666556555556666677899999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHc
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .+||..||.+||+    +.++++
T Consensus       259 ~~~l~~~p~~Rps----~~~l~~  277 (291)
T 1u46_A          259 VQCWAHKPEDRPT----FVALRD  277 (291)
T ss_dssp             HHHTCSSGGGSCC----HHHHHH
T ss_pred             HHHccCCcccCcC----HHHHHH
Confidence            9999999999999    566664

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=9.9e-44  Score=378.33  Aligned_cols=255  Identities=23%  Similarity=0.333  Sum_probs=208.4

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEE--EEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYF--AMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDR  404 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~v--AvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~  404 (730)
                      +..++|++++.||+|+||.||+|++..++..+  |+|.+....  .......+.+|+++|+.+ +||||+++++++.+.+
T Consensus        22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~   99 (327)
T 1fvr_A           22 LDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA--SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG   99 (327)
T ss_dssp             CCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT
T ss_pred             ccHHHccceeeeecCCCceEEEEEEccCCcccceeeeeecccc--chHHHHHHHHHHHHHHhccCCCchhhhceeeeeCC
Confidence            45688999999999999999999999888765  999986532  234456688999999999 9999999999999999


Q ss_pred             eeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG  470 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g  470 (730)
                      .+|+||||+++++|.+++....              ...+++..++.++.||+.||.|||++||+||||||+|||++.++
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~  179 (327)
T 1fvr_A          100 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENY  179 (327)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGG
T ss_pred             ceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCC
Confidence            9999999999999999887542              24689999999999999999999999999999999999999999


Q ss_pred             ceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCC
Q 004790          471 HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLP  550 (730)
Q Consensus       471 ~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (730)
                      .+||+|||+++....                                                                 
T Consensus       180 ~~kL~Dfg~~~~~~~-----------------------------------------------------------------  194 (327)
T 1fvr_A          180 VAKIADFGLSRGQEV-----------------------------------------------------------------  194 (327)
T ss_dssp             CEEECCTTCEESSCE-----------------------------------------------------------------
T ss_pred             eEEEcccCcCccccc-----------------------------------------------------------------
Confidence            999999999842100                                                                 


Q ss_pred             CCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCC
Q 004790          551 SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFP  629 (730)
Q Consensus       551 ~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p  629 (730)
                                  ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+......+..+. .....+
T Consensus       195 ------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~-~~~~~~  261 (327)
T 1fvr_A          195 ------------YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLP-QGYRLE  261 (327)
T ss_dssp             ------------ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGG-GTCCCC
T ss_pred             ------------cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhh-cCCCCC
Confidence                        000112357889999999999999999999999999999998 999998876544443333 333344


Q ss_pred             CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          630 DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       630 ~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      ....++.++++||.+||..||.+||++    +++++|
T Consensus       262 ~~~~~~~~l~~li~~~l~~dp~~Rps~----~ell~~  294 (327)
T 1fvr_A          262 KPLNCDDEVYDLMRQCWREKPYERPSF----AQILVS  294 (327)
T ss_dssp             CCTTBCHHHHHHHHHHTCSSGGGSCCH----HHHHHH
T ss_pred             CCCCCCHHHHHHHHHHccCChhhCcCH----HHHHHH
Confidence            445678999999999999999999994    565543

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=3.1e-43  Score=376.00  Aligned_cols=258  Identities=19%  Similarity=0.295  Sum_probs=209.6

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEEC-------CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELS-------STRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYT  398 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~-------~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~  398 (730)
                      .+..++|++++.||+|+||+||+|++.       .++..||||+++...  .......+.+|+++|+.+ +||||+++++
T Consensus        31 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~  108 (334)
T 2pvf_A           31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLG  108 (334)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC--cHHHHHHHHHHHHHHHHhhcCCCEeeEEE
Confidence            355689999999999999999999986       356789999997653  334566788999999999 9999999999


Q ss_pred             cccccceeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccE
Q 004790          399 HFETDRFSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENV  464 (730)
Q Consensus       399 ~f~~~~~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNI  464 (730)
                      ++.+++.+|+||||++||+|.+++....              ...+++..++.++.||+.||.|||++||+||||||+||
T Consensus       109 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NI  188 (334)
T 2pvf_A          109 ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNV  188 (334)
T ss_dssp             EECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGE
T ss_pred             EEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceE
Confidence            9999999999999999999999887642              13488999999999999999999999999999999999


Q ss_pred             EecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          465 LVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       465 Ll~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                      |++.++++||+|||++........                                                        
T Consensus       189 ll~~~~~~kL~Dfg~~~~~~~~~~--------------------------------------------------------  212 (334)
T 2pvf_A          189 LVTENNVMKIADFGLARDINNIDY--------------------------------------------------------  212 (334)
T ss_dssp             EECTTCCEEECCCTTCEECTTTSS--------------------------------------------------------
T ss_pred             EEcCCCCEEEcccccccccccccc--------------------------------------------------------
Confidence            999999999999999854211000                                                        


Q ss_pred             ccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeec
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVG  623 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~  623 (730)
                                        ........||+.|+|||++.+..++.++|||||||++|||++ |..||.+......... +.
T Consensus       213 ------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~-~~  273 (334)
T 2pvf_A          213 ------------------YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKL-LK  273 (334)
T ss_dssp             ------------------EECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHH-HH
T ss_pred             ------------------ccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHH-Hh
Confidence                              001112357899999999999999999999999999999999 9999988654433332 22


Q ss_pred             ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       624 ~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      .....+....++.++++||.+||..||.+||++    .++++
T Consensus       274 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~----~ell~  311 (334)
T 2pvf_A          274 EGHRMDKPANCTNELYMMMRDCWHAVPSQRPTF----KQLVE  311 (334)
T ss_dssp             HTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH----HHHHH
T ss_pred             cCCCCCCCccCCHHHHHHHHHHccCChhhCcCH----HHHHH
Confidence            223334445688999999999999999999995    55544

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1.3e-43  Score=371.30  Aligned_cols=254  Identities=24%  Similarity=0.294  Sum_probs=203.6

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEE----ECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSE----LSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~----~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      +...+|++++.||+|+||.||+|+    +..+++.||||++....  .......+.+|+++|+.++||||+++++++.+.
T Consensus        18 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   95 (302)
T 4e5w_A           18 FEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES--GGNHIADLKKEIEILRNLYHENIVKYKGICTED   95 (302)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-
T ss_pred             hhhhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc--cchhHHHHHHHHHHHHhCCCCCeeeeeeEEecC
Confidence            445679999999999999999999    56789999999997543  223346688999999999999999999999876


Q ss_pred             --ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          404 --RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       404 --~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                        ..+|+||||+++++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++++||+|||++.
T Consensus        96 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  174 (302)
T 4e5w_A           96 GGNGIKLIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTK  174 (302)
T ss_dssp             --CCEEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             CCceEEEEEEeCCCCcHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECcccccc
Confidence              67899999999999999885542 469999999999999999999999999999999999999999999999999985


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      .......                                                                         
T Consensus       175 ~~~~~~~-------------------------------------------------------------------------  181 (302)
T 4e5w_A          175 AIETDKE-------------------------------------------------------------------------  181 (302)
T ss_dssp             ECCTTCC-------------------------------------------------------------------------
T ss_pred             cccCCCc-------------------------------------------------------------------------
Confidence            4311000                                                                         


Q ss_pred             ccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCC--------------Cccceeeeeccccc
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG--------------NRATLFNVVGQQLR  627 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~--------------~~~~l~~i~~~~~~  627 (730)
                      .........||..|+|||++.+..++.++|||||||++|+|++|..||....              ....+.+.+.....
T Consensus       182 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (302)
T 4e5w_A          182 YYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKR  261 (302)
T ss_dssp             EEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCC
T ss_pred             ceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCC
Confidence            0001123468999999999999999999999999999999999999874321              11111222233344


Q ss_pred             CCCCCCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          628 FPDSPATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       628 ~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      .+....++.++.+||.+||..||.+||++.
T Consensus       262 ~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  291 (302)
T 4e5w_A          262 LPCPPNCPDEVYQLMRKCWEFQPSNRTSFQ  291 (302)
T ss_dssp             CCCCTTCCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred             CCCCCCCCHHHHHHHHHHcCCCCCCCCCHH
Confidence            555567899999999999999999999953

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=6.6e-44  Score=379.69  Aligned_cols=263  Identities=17%  Similarity=0.235  Sum_probs=211.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEE-----ECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSE-----LSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~-----~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      +..++|++++.||+|+||.||+|+     ...++..||||++....  .......+.+|+.+|+.++||||+++++++.+
T Consensus        27 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  104 (327)
T 2yfx_A           27 VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC--SEQDELDFLMEALIISKFNHQNIVRCIGVSLQ  104 (327)
T ss_dssp             CCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc--chhhHHHHHHHHHHHhhCCCCCCCeEEEEEcC
Confidence            556789999999999999999999     55678899999996442  22444568899999999999999999999999


Q ss_pred             cceeeEEeeecCCCCccccccccCC-----CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---CCceEE
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPG-----KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---DGHIML  474 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~-----~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~g~vKL  474 (730)
                      ...+|+||||++|++|.+++.....     ..+++..++.++.||+.||.|||++||+||||||+||||+.   ++.+||
T Consensus       105 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl  184 (327)
T 2yfx_A          105 SLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKI  184 (327)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred             CCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEE
Confidence            9999999999999999998876432     35889999999999999999999999999999999999984   446999


Q ss_pred             ecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCC
Q 004790          475 SDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTL  554 (730)
Q Consensus       475 ~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (730)
                      +|||++.......                                                                   
T Consensus       185 ~Dfg~~~~~~~~~-------------------------------------------------------------------  197 (327)
T 2yfx_A          185 GDFGMARDIYRAS-------------------------------------------------------------------  197 (327)
T ss_dssp             CCCHHHHHHHC---------------------------------------------------------------------
T ss_pred             Ccccccccccccc-------------------------------------------------------------------
Confidence            9999985421100                                                                   


Q ss_pred             cccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCC
Q 004790          555 PELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPA  633 (730)
Q Consensus       555 ~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~  633 (730)
                             .........||+.|+|||++.+..++.++|||||||++|+|++ |+.||.+......+..+.... .......
T Consensus       198 -------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~  269 (327)
T 2yfx_A          198 -------YYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGG-RMDPPKN  269 (327)
T ss_dssp             -----------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC-CCCCCTT
T ss_pred             -------ccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCC-CCCCCCC
Confidence                   0001123478999999999999999999999999999999998 999998765544443333322 2333456


Q ss_pred             CChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          634 TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       634 ~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ++..+.+||.+||..||.+||+    +.++++|.|+-.
T Consensus       270 ~~~~l~~li~~~l~~dp~~Rps----~~~ll~~l~~~~  303 (327)
T 2yfx_A          270 CPGPVYRIMTQCWQHQPEDRPN----FAIILERIEYCT  303 (327)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCC----HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCChhhCcC----HHHHHHHHHHHh
Confidence            7899999999999999999999    789999887653

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=9e-44  Score=375.60  Aligned_cols=266  Identities=23%  Similarity=0.343  Sum_probs=209.0

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc----c
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE----T  402 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~----~  402 (730)
                      .+..++|++++.||+|+||.||++++..+++.||||++....   ......+.+|+++++.++||||+++++++.    .
T Consensus        25 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  101 (317)
T 2buj_A           25 IIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHE---QQDREEAQREADMHRLFNHPNILRLVAYCLRERGA  101 (317)
T ss_dssp             EETTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESS---HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETT
T ss_pred             EECCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCC---HHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCC
Confidence            355678999999999999999999999999999999986542   344567889999999999999999999986    4


Q ss_pred             cceeeEEeeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      ...+|+||||+.+|+|.+++...  .+..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus       102 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~  181 (317)
T 2buj_A          102 KHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSM  181 (317)
T ss_dssp             EEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred             CceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence            56889999999999999887652  2457999999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ..........                                                                   ...
T Consensus       182 ~~~~~~~~~~-------------------------------------------------------------------~~~  194 (317)
T 2buj_A          182 NQACIHVEGS-------------------------------------------------------------------RQA  194 (317)
T ss_dssp             EESCEEEESH-------------------------------------------------------------------HHH
T ss_pred             hhcccccccc-------------------------------------------------------------------ccc
Confidence            5421000000                                                                   000


Q ss_pred             cccccccccccCcccCChhhhccCC---CCCcceeechhHHHHHHhhCCCCCCCCCC-ccceeeeecccccCCCCCCCCh
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEG---HGSAVDWWTFGIFLHELLYGKTPFKGSGN-RATLFNVVGQQLRFPDSPATSY  636 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~---~~~~sDIWSLG~iLyELltG~~PF~g~~~-~~~l~~i~~~~~~~p~~~~~s~  636 (730)
                      ..........||+.|+|||++.+..   ++.++|||||||++|||++|+.||..... ...+...+.....++....++.
T Consensus       195 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (317)
T 2buj_A          195 LTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSS  274 (317)
T ss_dssp             HHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--CCCCTTSCH
T ss_pred             ccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccCCCCccccCCH
Confidence            0001112457899999999998765   68899999999999999999999964211 1122222333455666677899


Q ss_pred             hHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          637 ASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       637 ~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      ++.+||.+||..||.+||+    +.++++|
T Consensus       275 ~l~~li~~~l~~dp~~Rps----~~~ll~~  300 (317)
T 2buj_A          275 ALWQLLNSMMTVDPHQRPH----IPLLLSQ  300 (317)
T ss_dssp             HHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHHHHHHhhcChhhCCC----HHHHHHH
Confidence            9999999999999999999    5677654

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=2.6e-43  Score=368.74  Aligned_cols=253  Identities=22%  Similarity=0.357  Sum_probs=198.4

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      .+++..++|+++++||+|+||+||+|++..   .||+|+++.... .....+.+.+|+++|+.++||||+++++++ ...
T Consensus        18 ~~ei~~~~y~~~~~lG~G~~g~Vy~~~~~~---~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~   92 (289)
T 3og7_A           18 DWEIPDGQITVGQRIGSGSFGTVYKGKWHG---DVAVKMLNVTAP-TPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAP   92 (289)
T ss_dssp             CCBCCTTSCEEEEEEEECSSEEEEEEESSS---EEEEEEESCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSS
T ss_pred             CCccCccceeeeeEecCCCCeEEEEEEEcC---ceEEEEEeccCC-CHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCC
Confidence            456778899999999999999999998754   499999975532 345567789999999999999999999955 556


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|+||||++|++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++....
T Consensus        93 ~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~  171 (289)
T 3og7_A           93 QLAIVTQWCEGSSLYHHLHAS-ETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKS  171 (289)
T ss_dssp             SCEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC------
T ss_pred             ccEEEEEecCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceeccccc
Confidence            789999999999999887644 3569999999999999999999999999999999999999999999999999984321


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ...                                                                          ...
T Consensus       172 ~~~--------------------------------------------------------------------------~~~  177 (289)
T 3og7_A          172 RWS--------------------------------------------------------------------------GSH  177 (289)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc--------------------------------------------------------------------------ccc
Confidence            000                                                                          000


Q ss_pred             cccccccCcccCChhhhc---cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC----CCCCChh
Q 004790          565 RSMSFVGTHEYLAPEIIK---GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD----SPATSYA  637 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~---g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~----~~~~s~~  637 (730)
                      ......||+.|+|||++.   +..++.++|||||||++|+|++|+.||.+......+..++......+.    ...++.+
T Consensus       178 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (289)
T 3og7_A          178 QFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKR  257 (289)
T ss_dssp             ------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTSCHH
T ss_pred             cccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhccccCCHH
Confidence            112347999999999997   566888999999999999999999999887666555544433222121    2357889


Q ss_pred             HHHHHHhhhcCCCCCcCCch
Q 004790          638 SRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~  657 (730)
                      +++||.+||..||.+||++.
T Consensus       258 l~~li~~~l~~~p~~Rps~~  277 (289)
T 3og7_A          258 MKRLMAECLKKKRDERPSFP  277 (289)
T ss_dssp             HHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHHHHHHccCChhhCCCHH
Confidence            99999999999999999953

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6e-43  Score=365.14  Aligned_cols=258  Identities=22%  Similarity=0.321  Sum_probs=210.3

Q ss_pred             ccccCCeEEEe-EEccCCcEEEEEEEEC--CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          327 ILGMSHFRLLK-RLGCGDIGSVYLSELS--STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       327 ~l~~~~y~il~-~LG~G~fG~Vyla~~~--~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      .+..++|.+++ .||+|+||.||+|.+.  .++..||+|+++...  .....+.+.+|+++|+.++||||+++++++. .
T Consensus         5 ~~~~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~   81 (287)
T 1u59_A            5 FLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-A   81 (287)
T ss_dssp             BCCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-S
T ss_pred             cccHHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc--chhHHHHHHHHHHHHHhCCCCCEeEEEEEec-C
Confidence            35567899988 9999999999999864  467889999997642  3345667889999999999999999999994 5


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      +.+|+||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...
T Consensus        82 ~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~  160 (287)
T 1u59_A           82 EALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKAL  160 (287)
T ss_dssp             SSEEEEEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             CCcEEEEEeCCCCCHHHHHHhC-CccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeee
Confidence            5689999999999999987643 356999999999999999999999999999999999999999999999999998543


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ......                                                                         .
T Consensus       161 ~~~~~~-------------------------------------------------------------------------~  167 (287)
T 1u59_A          161 GADDSY-------------------------------------------------------------------------Y  167 (287)
T ss_dssp             TTCSCE-------------------------------------------------------------------------E
T ss_pred             ccCcce-------------------------------------------------------------------------e
Confidence            110000                                                                         0


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      .......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+.........+... ...+....++.++++||
T Consensus       168 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~li  246 (287)
T 1u59_A          168 TARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQG-KRMECPPECPPELYALM  246 (287)
T ss_dssp             CCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTT-CCCCCCTTCCHHHHHHH
T ss_pred             eccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcC-CcCCCCCCcCHHHHHHH
Confidence            00112357899999999999999999999999999999998 99999887655444333332 22333457899999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcC
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      .+||..||.+||+    +.++++|
T Consensus       247 ~~~l~~~p~~Rps----~~~l~~~  266 (287)
T 1u59_A          247 SDCWIYKWEDRPD----FLTVEQR  266 (287)
T ss_dssp             HHTTCSSGGGSCC----HHHHHHH
T ss_pred             HHHcCCChhhCcC----HHHHHHH
Confidence            9999999999999    5666655

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=1.2e-43  Score=387.63  Aligned_cols=255  Identities=23%  Similarity=0.319  Sum_probs=203.0

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEEC---CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELS---STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~---~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      .+..++|++.+.||+|+||.||+|+++   .++..||||+++...  .......+.+|+.+|+.++||||+++++++.++
T Consensus        41 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~  118 (373)
T 2qol_A           41 ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY--TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS  118 (373)
T ss_dssp             BCCGGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS
T ss_pred             hcCHhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeC
Confidence            456689999999999999999999987   567789999997643  234556789999999999999999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ..+||||||++||+|.+++... +..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus       119 ~~~~lv~e~~~~~sL~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  197 (373)
T 2qol_A          119 KPVMIVTEYMENGSLDSFLRKH-DAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVL  197 (373)
T ss_dssp             SSCEEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             CceEEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCcccccc
Confidence            9999999999999999988754 356999999999999999999999999999999999999999999999999998542


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ......                                                                         .
T Consensus       198 ~~~~~~-------------------------------------------------------------------------~  204 (373)
T 2qol_A          198 EDDPEA-------------------------------------------------------------------------A  204 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCcc-------------------------------------------------------------------------c
Confidence            110000                                                                         0


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+......+.. +......+....++.++.+||
T Consensus       205 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~-i~~~~~~~~~~~~~~~l~~li  283 (373)
T 2qol_A          205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKA-VDEGYRLPPPMDCPAALYQLM  283 (373)
T ss_dssp             ---------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHH-HHTTEECCCCTTCBHHHHHHH
T ss_pred             eeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH-HHcCCCCCCCccccHHHHHHH
Confidence            00011246789999999999999999999999999999997 9999987665444433 333445555567899999999


Q ss_pred             HhhhcCCCCCcCCchh
Q 004790          643 RGLLVKEPQHRLGVKR  658 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~  658 (730)
                      .+||..||.+||++.+
T Consensus       284 ~~cl~~dp~~RPs~~~  299 (373)
T 2qol_A          284 LDCWQKDRNNRPKFEQ  299 (373)
T ss_dssp             HHHTCSSGGGSCCHHH
T ss_pred             HHHhCcChhhCcCHHH
Confidence            9999999999999643

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=4.5e-43  Score=364.48  Aligned_cols=254  Identities=24%  Similarity=0.321  Sum_probs=207.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECC---CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSS---TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~---t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      +..++|++.+.||+|+||+||+|++..   ++..||+|++.+..  .....+.+.+|+.+|+.++||||+++++++.++ 
T Consensus         9 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-   85 (281)
T 3cc6_A            9 IAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC--TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-   85 (281)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS--CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-
T ss_pred             ecccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc--CchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-
Confidence            456889999999999999999998653   44579999997653  224456788999999999999999999998765 


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      ..|+||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++++||+|||++....
T Consensus        86 ~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  164 (281)
T 3cc6_A           86 PTWIIMELYPYGELGHYLERN-KNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIE  164 (281)
T ss_dssp             SCEEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC-
T ss_pred             CCEEEEecCCCCCHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCcccc
Confidence            568999999999999988764 3468999999999999999999999999999999999999999999999999985321


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ...                                                                           ..
T Consensus       165 ~~~---------------------------------------------------------------------------~~  169 (281)
T 3cc6_A          165 DED---------------------------------------------------------------------------YY  169 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc---------------------------------------------------------------------------cc
Confidence            000                                                                           00


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ......||+.|+|||++.+..++.++|||||||++|||++ |+.||...........+. .....+....++..+.+||.
T Consensus       170 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~  248 (281)
T 3cc6_A          170 KASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLE-KGDRLPKPDLCPPVLYTLMT  248 (281)
T ss_dssp             ---CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHH-HTCCCCCCTTCCHHHHHHHH
T ss_pred             ccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHh-cCCCCCCCCCCCHHHHHHHH
Confidence            0112357889999999999999999999999999999998 999998766554443332 22334445568899999999


Q ss_pred             hhhcCCCCCcCCchhcHHHHHc
Q 004790          644 GLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       644 ~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      +||..||.+||+    +.++++
T Consensus       249 ~~l~~~p~~Rps----~~ell~  266 (281)
T 3cc6_A          249 RCWDYDPSDRPR----FTELVC  266 (281)
T ss_dssp             HHTCSSGGGSCC----HHHHHH
T ss_pred             HHccCCchhCcC----HHHHHH
Confidence            999999999999    456654

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=3.8e-43  Score=364.22  Aligned_cols=250  Identities=22%  Similarity=0.322  Sum_probs=206.4

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      ++.+..++|++++.||+|+||.||+|++. ++..||+|++......    .+.+.+|+++|+.++||||+++++++.. +
T Consensus         7 ~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~   80 (279)
T 1qpc_A            7 EWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSMS----PDAFLAEANLMKQLQHQRLVRLYAVVTQ-E   80 (279)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSSC----HHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             hcccCHHhhhheeeecCCCCeEEEEEEEc-CCcEEEEEEecCCccc----HHHHHHHHHHHHhCCCcCcceEEEEEcC-C
Confidence            34566789999999999999999999986 4568999999765432    3457889999999999999999999874 4


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      ..|+||||++|++|.+++....+..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++....
T Consensus        81 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~  160 (279)
T 1qpc_A           81 PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIE  160 (279)
T ss_dssp             SCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred             CcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCccccccc
Confidence            58999999999999998876544468999999999999999999999999999999999999999999999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ...                                                                           ..
T Consensus       161 ~~~---------------------------------------------------------------------------~~  165 (279)
T 1qpc_A          161 DNE---------------------------------------------------------------------------YT  165 (279)
T ss_dssp             SSC---------------------------------------------------------------------------EE
T ss_pred             Ccc---------------------------------------------------------------------------cc
Confidence            000                                                                           00


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+......+..+.. .........++.++.+||.
T Consensus       166 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~  244 (279)
T 1qpc_A          166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER-GYRMVRPDNCPEELYQLMR  244 (279)
T ss_dssp             CCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHT-TCCCCCCTTCCHHHHHHHH
T ss_pred             cccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhc-ccCCCCcccccHHHHHHHH
Confidence            0112357889999999999889999999999999999999 9999988665444433322 2333444567899999999


Q ss_pred             hhhcCCCCCcCCc
Q 004790          644 GLLVKEPQHRLGV  656 (730)
Q Consensus       644 ~lL~~DP~~R~t~  656 (730)
                      +||..||++||++
T Consensus       245 ~~l~~~p~~Rps~  257 (279)
T 1qpc_A          245 LCWKERPEDRPTF  257 (279)
T ss_dssp             HHTCSSGGGSCCH
T ss_pred             HHhccChhhCCCH
Confidence            9999999999995

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=4.8e-43  Score=369.86  Aligned_cols=262  Identities=22%  Similarity=0.287  Sum_probs=205.3

Q ss_pred             cCCccccCCeEEEeEEccCCcEEEEEEEECC---CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 004790          324 RDGILGMSHFRLLKRLGCGDIGSVYLSELSS---TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF  400 (730)
Q Consensus       324 ~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~---t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f  400 (730)
                      ....+..++|.+++.||+|+||.||+|++..   ++..||+|+++.... .......+.+|+.+|+.++||||+++++++
T Consensus        27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~  105 (313)
T 3brb_A           27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNS-SQREIEEFLSEAACMKDFSHPNVIRLLGVC  105 (313)
T ss_dssp             TTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CC-CHHHHHHHHHHHHHHHTCCCTTBCCCCEEE
T ss_pred             HhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEecccc-chhHHHHHHHHHHHHhcCCCCCeeeeeEEE
Confidence            3445667899999999999999999998765   566899999976533 234556788999999999999999999998


Q ss_pred             cccc-----eeeEEeeecCCCCccccccc----cCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc
Q 004790          401 ETDR-----FSCLVMEYCPGGDLHTLRQR----QPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH  471 (730)
Q Consensus       401 ~~~~-----~l~LVmEy~~GGsL~~ll~~----~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~  471 (730)
                      .+..     ..|+||||+++++|..++..    .....+++..++.++.||+.||.|||++||+||||||+|||++.+++
T Consensus       106 ~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~  185 (313)
T 3brb_A          106 IEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMT  185 (313)
T ss_dssp             EC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSC
T ss_pred             eeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCc
Confidence            7654     45999999999999987742    22357999999999999999999999999999999999999999999


Q ss_pred             eEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCC
Q 004790          472 IMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPS  551 (730)
Q Consensus       472 vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (730)
                      +||+|||++.......                                                                
T Consensus       186 ~kl~Dfg~~~~~~~~~----------------------------------------------------------------  201 (313)
T 3brb_A          186 VCVADFGLSKKIYSGD----------------------------------------------------------------  201 (313)
T ss_dssp             EEECSCSCC-----------------------------------------------------------------------
T ss_pred             EEEeecCcceeccccc----------------------------------------------------------------
Confidence            9999999985421000                                                                


Q ss_pred             CCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCC
Q 004790          552 STLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPD  630 (730)
Q Consensus       552 ~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~  630 (730)
                                .........||+.|+|||++.+..++.++|||||||++|+|++ |..||.+.........+.... ..+.
T Consensus       202 ----------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~-~~~~  270 (313)
T 3brb_A          202 ----------YYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGH-RLKQ  270 (313)
T ss_dssp             -------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTC-CCCC
T ss_pred             ----------ccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCC-CCCC
Confidence                      0000112357889999999999999999999999999999999 999998876655544443332 3334


Q ss_pred             CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       631 ~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      ...++.++.+||.+||..||.+||++    .++++
T Consensus       271 ~~~~~~~l~~li~~~l~~dp~~Rps~----~~l~~  301 (313)
T 3brb_A          271 PEDCLDELYEIMYSCWRTDPLDRPTF----SVLRL  301 (313)
T ss_dssp             BTTCCHHHHHHHHHTTCSSGGGSCCH----HHHHH
T ss_pred             CccccHHHHHHHHHHcCCChhhCcCH----HHHHH
Confidence            45688999999999999999999994    55554

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-43  Score=378.39  Aligned_cols=256  Identities=21%  Similarity=0.301  Sum_probs=205.1

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEE----EEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYF----AMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~v----AvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      .+..++|++++.||+|+||+||+|++..+++.+    |+|.+....  .......+.+|+.+|+.++||||+++++++.+
T Consensus        11 ~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   88 (327)
T 3lzb_A           11 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT--SPKANKEILDEAYVMASVDNPHVCRLLGICLT   88 (327)
T ss_dssp             ECCTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCS--SCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES
T ss_pred             ccCHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeecccc--CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec
Confidence            356689999999999999999999998888766    555554322  12234567899999999999999999999987


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      +. .++||||+.+|+|.+++... ...+++..++.|+.||+.||.|||++||+||||||+||||+.++++||+|||+++.
T Consensus        89 ~~-~~~v~~~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~  166 (327)
T 3lzb_A           89 ST-VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKL  166 (327)
T ss_dssp             SS-EEEEECCCSSCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC---
T ss_pred             CC-ceEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeE
Confidence            65 78999999999999988764 35699999999999999999999999999999999999999999999999999854


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ......                                                                          
T Consensus       167 ~~~~~~--------------------------------------------------------------------------  172 (327)
T 3lzb_A          167 LGAEEK--------------------------------------------------------------------------  172 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCccc--------------------------------------------------------------------------
Confidence            211000                                                                          


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      ........||+.|+|||++.+..++.++|||||||++|||++ |+.||.+...... ..++......+....++.++.+|
T Consensus       173 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l  251 (327)
T 3lzb_A          173 EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI-SSILEKGERLPQPPICTIDVYMI  251 (327)
T ss_dssp             -------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH-HHHHHTTCCCCCCTTBCHHHHHH
T ss_pred             cccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH-HHHHHcCCCCCCCccCCHHHHHH
Confidence            001112357889999999999999999999999999999999 9999988655443 33444444555666789999999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHc
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      |++||..||.+||++    .++++
T Consensus       252 i~~~l~~dp~~Rps~----~ell~  271 (327)
T 3lzb_A          252 MRKCWMIDADSRPKF----RELII  271 (327)
T ss_dssp             HHHHTCSSGGGSCCH----HHHHH
T ss_pred             HHHHcCCChhHCcCH----HHHHH
Confidence            999999999999995    55554

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=9.4e-44  Score=390.58  Aligned_cols=252  Identities=23%  Similarity=0.375  Sum_probs=200.8

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc--e
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR--F  405 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~--~  405 (730)
                      ...++|++.+.||+|+||+||+|++..+++.||||++.......  ....+.+|+++|+.++||||+++++++....  .
T Consensus         6 ~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~   83 (396)
T 4eut_A            6 TSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLR--PVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRH   83 (396)
T ss_dssp             CSSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGS--CHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCC
T ss_pred             CCCCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccc--hHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCe
Confidence            34578999999999999999999999999999999997654322  2455678999999999999999999987654  7


Q ss_pred             eeEEeeecCCCCccccccccCC-CCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe----cCCCceEEeccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPG-KHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV----RDDGHIMLSDFDLS  480 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~-~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl----~~~g~vKL~DFGlA  480 (730)
                      +|||||||+||+|.+++..... ..+++..++.++.||+.||.|||++||+||||||+|||+    +.++.+||+|||++
T Consensus        84 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a  163 (396)
T 4eut_A           84 KVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA  163 (396)
T ss_dssp             EEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGC
T ss_pred             eEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCc
Confidence            8999999999999998876432 239999999999999999999999999999999999999    77888999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +....                                                                           
T Consensus       164 ~~~~~---------------------------------------------------------------------------  168 (396)
T 4eut_A          164 RELED---------------------------------------------------------------------------  168 (396)
T ss_dssp             EECCC---------------------------------------------------------------------------
T ss_pred             eEccC---------------------------------------------------------------------------
Confidence            54210                                                                           


Q ss_pred             cccccccccccCcccCChhhhcc--------CCCCCcceeechhHHHHHHhhCCCCCCCCCCc----cceeeeecccc--
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKG--------EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR----ATLFNVVGQQL--  626 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g--------~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~----~~l~~i~~~~~--  626 (730)
                        .....+.+||+.|+|||++.+        ..++.++|||||||++|||++|+.||......    +.+.+++.+..  
T Consensus       169 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~  246 (396)
T 4eut_A          169 --DEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSG  246 (396)
T ss_dssp             --GGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTT
T ss_pred             --CCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcc
Confidence              001123579999999999976        45788999999999999999999999754322    22222221110  


Q ss_pred             -----------------cCCCCC----CCChhHHHHHHhhhcCCCCCcCCchh
Q 004790          627 -----------------RFPDSP----ATSYASRDLIRGLLVKEPQHRLGVKR  658 (730)
Q Consensus       627 -----------------~~p~~~----~~s~~~~dLI~~lL~~DP~~R~t~~~  658 (730)
                                       .++...    ..+..+.+||++||.+||++|+++.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e  299 (396)
T 4eut_A          247 AISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQ  299 (396)
T ss_dssp             CCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHH
T ss_pred             cchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHH
Confidence                             112111    23456789999999999999999643

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=5.1e-43  Score=366.14  Aligned_cols=251  Identities=24%  Similarity=0.317  Sum_probs=194.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHh--cCCCCCcccccccc----
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL--LDHPFLPTLYTHFE----  401 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~--L~HPnIV~L~~~f~----  401 (730)
                      +..++|++++.||+|+||+||+|++  +++.||||++....      .....+|.+++..  ++||||+++++++.    
T Consensus         5 ~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~------~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~   76 (301)
T 3q4u_A            5 TVARDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSRD------EKSWFRETELYNTVMLRHENILGFIASDMTSRH   76 (301)
T ss_dssp             CCGGGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGGG------HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEET
T ss_pred             cccCcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEecccc------chhhHHHHHHHHHhhccCcCeeeEEEeeccccC
Confidence            3457899999999999999999988  57889999997643      2334567777777  79999999999854    


Q ss_pred             ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhH--------hcceeecccCCccEEecCCCceE
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH--------MLGVVYRDLKPENVLVRDDGHIM  473 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH--------~~gIVHRDLKPeNILl~~~g~vK  473 (730)
                      ....+|+||||+++|+|.++++.   ..+++..++.++.||+.||.|||        ++||+||||||+|||++.++++|
T Consensus        77 ~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~k  153 (301)
T 3q4u_A           77 SSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCC  153 (301)
T ss_dssp             TEEEEEEEECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEE
T ss_pred             CCceeEEehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEE
Confidence            35679999999999999998865   36999999999999999999999        99999999999999999999999


Q ss_pred             EecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCC
Q 004790          474 LSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSST  553 (730)
Q Consensus       474 L~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (730)
                      |+|||+++........                                                                
T Consensus       154 l~Dfg~a~~~~~~~~~----------------------------------------------------------------  169 (301)
T 3q4u_A          154 IADLGLAVMHSQSTNQ----------------------------------------------------------------  169 (301)
T ss_dssp             ECCCTTCEEEETTTTE----------------------------------------------------------------
T ss_pred             EeeCCCeeeccccccc----------------------------------------------------------------
Confidence            9999998543211000                                                                


Q ss_pred             CcccccccccccccccccCcccCChhhhccC------CCCCcceeechhHHHHHHhhC----------CCCCCCCCCccc
Q 004790          554 LPELVAEPTAARSMSFVGTHEYLAPEIIKGE------GHGSAVDWWTFGIFLHELLYG----------KTPFKGSGNRAT  617 (730)
Q Consensus       554 ~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~------~~~~~sDIWSLG~iLyELltG----------~~PF~g~~~~~~  617 (730)
                              ........+||+.|+|||++.+.      .++.++|||||||++|||++|          +.||........
T Consensus       170 --------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~  241 (301)
T 3q4u_A          170 --------LDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDP  241 (301)
T ss_dssp             --------EECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred             --------ccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCc
Confidence                    00011234799999999999887      345789999999999999999          888876533322


Q ss_pred             eee----eecccccCCCC------CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          618 LFN----VVGQQLRFPDS------PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       618 l~~----i~~~~~~~p~~------~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      ...    ........+..      ...+.++.+||.+||..||++||++    .++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~----~~i~~  295 (301)
T 3q4u_A          242 SFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTA----LRIKK  295 (301)
T ss_dssp             CHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCH----HHHHH
T ss_pred             chhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCH----HHHHH
Confidence            211    11111111111      1234678999999999999999994    55553

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=1.9e-43  Score=376.21  Aligned_cols=270  Identities=23%  Similarity=0.315  Sum_probs=211.2

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEE----ECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc-
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSE----LSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE-  401 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~----~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~-  401 (730)
                      .+..++|++++.||+|+||.||+|+    ...+++.||||++....   ....+.+.+|+++|+.++||||+++++++. 
T Consensus        19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   95 (327)
T 3lxl_A           19 IFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG---PDQQRDFQREIQILKALHSDFIVKYRGVSYG   95 (327)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC
T ss_pred             hhchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC---HHHHHHHHHHHHHHHhcCCCceeEEEEEEec
Confidence            3566899999999999999999999    46788999999997653   244566889999999999999999999875 


Q ss_pred             -ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          402 -TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       402 -~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                       +...+|+||||++|++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||++
T Consensus        96 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~  174 (327)
T 3lxl_A           96 PGRQSLRLVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA  174 (327)
T ss_dssp             SSSCEEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGC
T ss_pred             CCCceEEEEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccc
Confidence             5677999999999999999887642 46899999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ........                                                                        
T Consensus       175 ~~~~~~~~------------------------------------------------------------------------  182 (327)
T 3lxl_A          175 KLLPLDKD------------------------------------------------------------------------  182 (327)
T ss_dssp             EECCTTCS------------------------------------------------------------------------
T ss_pred             eecccCCc------------------------------------------------------------------------
Confidence            54311000                                                                        


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc--------------cceeeeecccc
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR--------------ATLFNVVGQQL  626 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~--------------~~l~~i~~~~~  626 (730)
                       .........||+.|+|||++.+..++.++|||||||++|+|++|+.||......              ..+...+....
T Consensus       183 -~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (327)
T 3lxl_A          183 -YYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQ  261 (327)
T ss_dssp             -EEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTC
T ss_pred             -cceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhccc
Confidence             000111246899999999999999999999999999999999999999754221              11112223334


Q ss_pred             cCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       627 ~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      ..+....++.++++||.+||..||.+||++.+.++ .|+..|...-.|
T Consensus       262 ~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~-~L~~~~~~~~~~  308 (327)
T 3lxl_A          262 RLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGP-QLDMLWSGSRGC  308 (327)
T ss_dssp             CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH-HHHHC-------
T ss_pred             CCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHH-HHHHHHhhhcCc
Confidence            45555678999999999999999999999533222 244455544333

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=2.9e-43  Score=394.04  Aligned_cols=251  Identities=20%  Similarity=0.304  Sum_probs=210.1

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      +.+..++|++.+.||+|+||+||+|++.. +..||||+++....    ..+.+.+|+.+|+.++||||+++++++. +..
T Consensus       183 ~~i~~~~~~~~~~lG~G~fg~V~~~~~~~-~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~  256 (454)
T 1qcf_A          183 WEIPRESLKLEKKLGAGQFGEVWMATYNK-HTKVAVKTMKPGSM----SVEAFLAEANVMKTLQHDKLVKLHAVVT-KEP  256 (454)
T ss_dssp             SBCCGGGEEEEEEEECCSSEEEEEEEETT-TEEEEEEEECTTSB----CHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSS
T ss_pred             eeechHHeEEEEEcccCCceEEEEEEECC-ccEEEEEEecCCCc----cHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCc
Confidence            34667899999999999999999999974 56799999976542    2456889999999999999999999987 567


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|||||||++|+|.+++....+..+++..+..++.||+.||+|||++|||||||||+||||+.++++||+|||+++....
T Consensus       257 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~  336 (454)
T 1qcf_A          257 IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIED  336 (454)
T ss_dssp             CEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCC
T ss_pred             cEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCC
Confidence            89999999999999998765445688999999999999999999999999999999999999999999999999854210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ..                                                                           ...
T Consensus       337 ~~---------------------------------------------------------------------------~~~  341 (454)
T 1qcf_A          337 NE---------------------------------------------------------------------------YTA  341 (454)
T ss_dssp             HH---------------------------------------------------------------------------HHT
T ss_pred             Cc---------------------------------------------------------------------------eec
Confidence            00                                                                           000


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~  644 (730)
                      .....+|+.|+|||++.+..++.++|||||||+||||++ |+.||.+....+.+..+. ...+.+....++.++.+||.+
T Consensus       342 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~li~~  420 (454)
T 1qcf_A          342 REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALE-RGYRMPRPENCPEELYNIMMR  420 (454)
T ss_dssp             TCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHH-HTCCCCCCTTSCHHHHHHHHH
T ss_pred             cCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHH
Confidence            012356889999999999999999999999999999999 999999876655444433 344556666789999999999


Q ss_pred             hhcCCCCCcCCchh
Q 004790          645 LLVKEPQHRLGVKR  658 (730)
Q Consensus       645 lL~~DP~~R~t~~~  658 (730)
                      ||..||++||++++
T Consensus       421 cl~~dp~~RPt~~~  434 (454)
T 1qcf_A          421 CWKNRPEERPTFEY  434 (454)
T ss_dssp             HTCSSGGGSCCHHH
T ss_pred             HccCChhHCcCHHH
Confidence            99999999999643

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=4.7e-43  Score=379.55  Aligned_cols=244  Identities=17%  Similarity=0.191  Sum_probs=197.6

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEE-----EECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC---CCCCccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLS-----ELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD---HPFLPTLYT  398 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla-----~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~---HPnIV~L~~  398 (730)
                      .+..++|++++.||+|+||+||+|     .+..+++.||||+++...      ...+.+|+++++.+.   |+||+++++
T Consensus        61 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~------~~~~~~e~~~~~~l~~~~~~~iv~~~~  134 (365)
T 3e7e_A           61 QLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN------PWEFYIGTQLMERLKPSMQHMFMKFYS  134 (365)
T ss_dssp             ECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC------HHHHHHHHHHHHHSCGGGGGGBCCEEE
T ss_pred             EECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC------hhHHHHHHHHHHHhhhhhhhhhhhhhe
Confidence            456788999999999999999999     467788999999997643      224667888888886   999999999


Q ss_pred             cccccceeeEEeeecCCCCcccccccc---CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-------
Q 004790          399 HFETDRFSCLVMEYCPGGDLHTLRQRQ---PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-------  468 (730)
Q Consensus       399 ~f~~~~~l~LVmEy~~GGsL~~ll~~~---~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-------  468 (730)
                      ++..++..|||||||+||+|.+++...   ....+++..++.|+.||+.||+|||++|||||||||+||||+.       
T Consensus       135 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~  214 (365)
T 3e7e_A          135 AHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDD  214 (365)
T ss_dssp             EEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC--
T ss_pred             eeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCccc
Confidence            999999999999999999999988642   2457999999999999999999999999999999999999998       


Q ss_pred             ----CCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          469 ----DGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       469 ----~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                          ++++||+|||+|+.+....                                                         
T Consensus       215 ~~~~~~~~kl~DFG~a~~~~~~~---------------------------------------------------------  237 (365)
T 3e7e_A          215 EDDLSAGLALIDLGQSIDMKLFP---------------------------------------------------------  237 (365)
T ss_dssp             ----CTTEEECCCTTCEEGGGSC---------------------------------------------------------
T ss_pred             cccccCCEEEeeCchhhhhhccC---------------------------------------------------------
Confidence                8999999999995431100                                                         


Q ss_pred             ccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ  624 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~  624 (730)
                                       ........+||+.|+|||++.+..|+.++|||||||++|||++|+.||.........  + ..
T Consensus       238 -----------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~--~-~~  297 (365)
T 3e7e_A          238 -----------------KGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECK--P-EG  297 (365)
T ss_dssp             -----------------TTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEE--E-CS
T ss_pred             -----------------CCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCcee--e-ch
Confidence                             001123458999999999999999999999999999999999999999754332211  1 11


Q ss_pred             cccCCCCCCCChhHHHHHHhhhcCCCCCcCCc
Q 004790          625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGV  656 (730)
Q Consensus       625 ~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~  656 (730)
                      .+  +.. ..+..+.+|+..||..+|.+|+..
T Consensus       298 ~~--~~~-~~~~~~~~~~~~~l~~~p~~r~~~  326 (365)
T 3e7e_A          298 LF--RRL-PHLDMWNEFFHVMLNIPDCHHLPS  326 (365)
T ss_dssp             CC--TTC-SSHHHHHHHHHHHHCCCCTTCCCC
T ss_pred             hc--ccc-CcHHHHHHHHHHHcCCCCCCcchH
Confidence            11  111 236778999999999999999775

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=5.9e-43  Score=365.91  Aligned_cols=254  Identities=22%  Similarity=0.275  Sum_probs=204.9

Q ss_pred             CccccCCeEEEe-EEccCCcEEEEEEE--ECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          326 GILGMSHFRLLK-RLGCGDIGSVYLSE--LSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       326 ~~l~~~~y~il~-~LG~G~fG~Vyla~--~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      ..+..++|++.+ .||+|+||+||+|.  ...+++.||||+++.... .....+.+.+|+++++.++||||+++++++ .
T Consensus        11 ~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~   88 (291)
T 1xbb_A           11 VYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN-DPALKDELLAEANVMQQLDNPYIVRMIGIC-E   88 (291)
T ss_dssp             CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-E
T ss_pred             eeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeeccccc-CHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-C
Confidence            345667899998 99999999999995  466788999999976532 224456789999999999999999999999 5


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      ...+|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..
T Consensus        89 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  166 (291)
T 1xbb_A           89 AESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKA  166 (291)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             CCCcEEEEEeCCCCCHHHHHHhC--cCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCccee
Confidence            66789999999999999988765  5699999999999999999999999999999999999999999999999999854


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      .......                                                                         
T Consensus       167 ~~~~~~~-------------------------------------------------------------------------  173 (291)
T 1xbb_A          167 LRADENY-------------------------------------------------------------------------  173 (291)
T ss_dssp             CCTTCSE-------------------------------------------------------------------------
T ss_pred             eccCCCc-------------------------------------------------------------------------
Confidence            3110000                                                                         


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      ........||+.|+|||++.+..++.++|||||||++|+|++ |+.||.+.........+.. ....+....++.++++|
T Consensus       174 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l  252 (291)
T 1xbb_A          174 YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEK-GERMGCPAGCPREMYDL  252 (291)
T ss_dssp             EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHT-TCCCCCCTTCCHHHHHH
T ss_pred             ccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc-CCCCCCCCCCCHHHHHH
Confidence            000112357889999999999999999999999999999999 9999988655443333322 22333345689999999


Q ss_pred             HHhhhcCCCCCcCCch
Q 004790          642 IRGLLVKEPQHRLGVK  657 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~  657 (730)
                      |.+||..||.+||++.
T Consensus       253 i~~~l~~dp~~Rps~~  268 (291)
T 1xbb_A          253 MNLCWTYDVENRPGFA  268 (291)
T ss_dssp             HHHHTCSSTTTSCCHH
T ss_pred             HHHHcCCChhhCcCHH
Confidence            9999999999999953

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=1.7e-43  Score=366.16  Aligned_cols=247  Identities=22%  Similarity=0.353  Sum_probs=206.5

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc-------
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET-------  402 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~-------  402 (730)
                      ..+|++++.||+|+||.||+|++..+++.||+|++....       ..+.+|+++|+.++||||++++++|..       
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPET   82 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS-------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc-------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccc
Confidence            367999999999999999999999999999999997643       235689999999999999999998854       


Q ss_pred             ---------cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceE
Q 004790          403 ---------DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIM  473 (730)
Q Consensus       403 ---------~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vK  473 (730)
                               ...+|+||||+++++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+|
T Consensus        83 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~k  162 (284)
T 2a19_B           83 SSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVK  162 (284)
T ss_dssp             ------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEE
T ss_pred             ccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCEE
Confidence                     56689999999999999998766556799999999999999999999999999999999999999999999


Q ss_pred             EecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCC
Q 004790          474 LSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSST  553 (730)
Q Consensus       474 L~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (730)
                      |+|||++......                                                                   
T Consensus       163 l~Dfg~~~~~~~~-------------------------------------------------------------------  175 (284)
T 2a19_B          163 IGDFGLVTSLKND-------------------------------------------------------------------  175 (284)
T ss_dssp             ECCCTTCEESSCC-------------------------------------------------------------------
T ss_pred             ECcchhheecccc-------------------------------------------------------------------
Confidence            9999998542100                                                                   


Q ss_pred             CcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCC
Q 004790          554 LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPA  633 (730)
Q Consensus       554 ~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~  633 (730)
                                .......||+.|+|||++.+..++.++|||||||++|||++|..||.....  ....+...    .....
T Consensus       176 ----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~--~~~~~~~~----~~~~~  239 (284)
T 2a19_B          176 ----------GKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSK--FFTDLRDG----IISDI  239 (284)
T ss_dssp             ----------SCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHH--HHHHHHTT----CCCTT
T ss_pred             ----------ccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHH--HHHHhhcc----ccccc
Confidence                      001124689999999999999999999999999999999999999854211  11111111    11245


Q ss_pred             CChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          634 TSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       634 ~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      ++..+++||.+||..||.+||+    +.++++|.++-
T Consensus       240 ~~~~~~~li~~~l~~dp~~Rps----~~e~l~~l~~~  272 (284)
T 2a19_B          240 FDKKEKTLLQKLLSKKPEDRPN----TSEILRTLTVW  272 (284)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCC----HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHccCChhhCcC----HHHHHHHHHHH
Confidence            7889999999999999999999    68999887654

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=1.5e-42  Score=363.09  Aligned_cols=252  Identities=17%  Similarity=0.260  Sum_probs=202.7

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCC---CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccc-ccccce
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSST---RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTH-FETDRF  405 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t---~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~-f~~~~~  405 (730)
                      ..+|++.+.||+|+||+||+|++..+   ...+|+|++....  .......+.+|+.+|+.++||||++++++ +..++.
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  101 (298)
T 3f66_A           24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT--DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGS  101 (298)
T ss_dssp             GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC--SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSC
T ss_pred             ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCC--CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCc
Confidence            45799999999999999999997543   3468999987532  33455678899999999999999999998 566778


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      .|+||||+++|+|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++++||+|||++.....
T Consensus       102 ~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~  180 (298)
T 3f66_A          102 PLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD  180 (298)
T ss_dssp             CEEEEECCTTCBHHHHHHCT-TCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSC
T ss_pred             eEEEEeCCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECcccccccccc
Confidence            99999999999999988653 35689999999999999999999999999999999999999999999999999854211


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ....                                                                        ....
T Consensus       181 ~~~~------------------------------------------------------------------------~~~~  188 (298)
T 3f66_A          181 KEYY------------------------------------------------------------------------SVHN  188 (298)
T ss_dssp             GGGC------------------------------------------------------------------------BC--
T ss_pred             cchh------------------------------------------------------------------------cccc
Confidence            0000                                                                        0001


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~  644 (730)
                      .....||+.|+|||++.+..++.++|||||||++|+|++ |.+||.+.+.......+.... .......++..+.+||.+
T Consensus       189 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~  267 (298)
T 3f66_A          189 KTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR-RLLQPEYCPDPLYEVMLK  267 (298)
T ss_dssp             ---CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTC-CCCCCTTCCHHHHHHHHH
T ss_pred             ccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCC-CCCCCccCCHHHHHHHHH
Confidence            123468999999999999999999999999999999999 677777766555544444333 223345678999999999


Q ss_pred             hhcCCCCCcCCch
Q 004790          645 LLVKEPQHRLGVK  657 (730)
Q Consensus       645 lL~~DP~~R~t~~  657 (730)
                      ||..||.+||++.
T Consensus       268 ~l~~~p~~Rps~~  280 (298)
T 3f66_A          268 CWHPKAEMRPSFS  280 (298)
T ss_dssp             HTCSSGGGSCCHH
T ss_pred             HcCCChhhCcCHH
Confidence            9999999999953

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=5e-44  Score=379.52  Aligned_cols=261  Identities=21%  Similarity=0.229  Sum_probs=204.1

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      ..+..++|++.+.||+|+||.||+|++. +++.||||++......  .....+.+|+++|+.++||||+++++++.+...
T Consensus        25 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  101 (326)
T 3uim_A           25 LQVASDNFSNKNILGRGGFGKVYKGRLA-DGTLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  101 (326)
T ss_dssp             HHTTTTSSCSTTEEECCSSSEEEEECCS-SSCCEEEEECCC-------CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSC
T ss_pred             HHHHhhccccceeEecCCCcEEEEEEec-CCCEEEEEEeccccCc--hHHHHHHHHHHHHHhccCCCccceEEEEecCCc
Confidence            3456689999999999999999999864 5789999999765322  122357899999999999999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCC--CCccHHHHHHhHHHHHHHHHHhHhc---ceeecccCCccEEecCCCceEEeccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPG--KHFSEYAARFYAAEVLLALEYLHML---GVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~--~~lse~~a~~~~~qIl~AL~yLH~~---gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                      .|+||||++||+|.+++.....  ..+++..++.++.||+.||.|||++   ||+||||||+|||++.++++||+|||++
T Consensus       102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~  181 (326)
T 3uim_A          102 RLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLA  181 (326)
T ss_dssp             CEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSC
T ss_pred             eEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccc
Confidence            9999999999999998876532  3489999999999999999999999   9999999999999999999999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ......                                                                          
T Consensus       182 ~~~~~~--------------------------------------------------------------------------  187 (326)
T 3uim_A          182 KLMDYK--------------------------------------------------------------------------  187 (326)
T ss_dssp             EECCSS--------------------------------------------------------------------------
T ss_pred             cccCcc--------------------------------------------------------------------------
Confidence            542100                                                                          


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCC----CCccce-------------eeeec
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGS----GNRATL-------------FNVVG  623 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~----~~~~~l-------------~~i~~  623 (730)
                       ........+||+.|+|||++.+..++.++|||||||++|||++|+.||...    .....+             ..+..
T Consensus       188 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (326)
T 3uim_A          188 -DTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVD  266 (326)
T ss_dssp             -SSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSC
T ss_pred             -cccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcC
Confidence             000112346999999999999999999999999999999999999999621    111111             11111


Q ss_pred             ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCC
Q 004790          624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF  668 (730)
Q Consensus       624 ~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPf  668 (730)
                      ...........+..+.+||.+||..||.+||+    +.++++|-.
T Consensus       267 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps----~~ell~~L~  307 (326)
T 3uim_A          267 VDLQGNYKDEEVEQLIQVALLCTQSSPMERPK----MSEVVRMLE  307 (326)
T ss_dssp             TTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCC----HHHHHHHHH
T ss_pred             hhhccccCHHHHHHHHHHHHHHhCcCCccCCC----HHHHHHHhc
Confidence            11111111223467889999999999999999    567776644

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=4.3e-43  Score=377.39  Aligned_cols=258  Identities=19%  Similarity=0.223  Sum_probs=196.5

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECC---CCeEEEEEEeehhhhhhH---H-----HHHHHHHHHHHHHhcCCCCCccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSS---TRCYFAMKVMDKASLASR---K-----KLTRAQTEREILQLLDHPFLPTL  396 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~---t~~~vAvKvi~k~~~~~~---~-----~~~~~~~E~~IL~~L~HPnIV~L  396 (730)
                      +..++|++++.||+|+||.||+|++..   ++..+|||++.+......   .     ....+.+|+.+++.++||||+++
T Consensus        34 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~  113 (345)
T 2v62_A           34 MEGNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLF  113 (345)
T ss_dssp             TTSCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCE
T ss_pred             ccCceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCccee
Confidence            345789999999999999999999987   788999999876432111   1     11235678889999999999999


Q ss_pred             cccccc----cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC--
Q 004790          397 YTHFET----DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG--  470 (730)
Q Consensus       397 ~~~f~~----~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g--  470 (730)
                      ++++.+    +..+||||||+ |++|.+++...  +.+++..++.++.||+.||.|||++||+||||||+||||+.++  
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~  190 (345)
T 2v62_A          114 YGSGLTEFKGRSYRFMVMERL-GIDLQKISGQN--GTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPD  190 (345)
T ss_dssp             EEEEEEESSSCEEEEEEEECE-EEEHHHHCBGG--GBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTT
T ss_pred             ecccccccCCCcEEEEEEecc-CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCC
Confidence            999887    78999999999 99999988765  3799999999999999999999999999999999999999887  


Q ss_pred             ceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCC
Q 004790          471 HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLP  550 (730)
Q Consensus       471 ~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (730)
                      .+||+|||+++.+.......                                                            
T Consensus       191 ~~kL~Dfg~a~~~~~~~~~~------------------------------------------------------------  210 (345)
T 2v62_A          191 QVYLADYGLSYRYCPNGNHK------------------------------------------------------------  210 (345)
T ss_dssp             SEEECCCTTCEESSGGGCCC------------------------------------------------------------
T ss_pred             cEEEEeCCCceecccccccc------------------------------------------------------------
Confidence            99999999996532110000                                                            


Q ss_pred             CCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc--ccC
Q 004790          551 SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ--LRF  628 (730)
Q Consensus       551 ~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~--~~~  628 (730)
                               ..........+||+.|+|||++.+..++.++|||||||++|||++|+.||.+..............  ..+
T Consensus       211 ---------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~  281 (345)
T 2v62_A          211 ---------QYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDEL  281 (345)
T ss_dssp             ---------CCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTT
T ss_pred             ---------cchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccc
Confidence                     000011234589999999999999999999999999999999999999997533222211111111  111


Q ss_pred             CC-------CCCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          629 PD-------SPATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       629 p~-------~~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      +.       ...++.++++||.+||..||++||+++
T Consensus       282 ~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  317 (345)
T 2v62_A          282 PQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQ  317 (345)
T ss_dssp             THHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHH
T ss_pred             cHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHH
Confidence            11       126788999999999999999999953

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=8.7e-43  Score=373.58  Aligned_cols=254  Identities=22%  Similarity=0.284  Sum_probs=206.1

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCC----eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTR----CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~----~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      .+..++|++.+.||+|+||+||+|++..++    ..||||++....  .......+.+|+.+|+.++||||+++++++.+
T Consensus        40 ~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  117 (333)
T 1mqb_A           40 EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK  117 (333)
T ss_dssp             BCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             cCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEec
Confidence            466789999999999999999999986553    459999997543  23445578899999999999999999999999


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      .+.+||||||++||+|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..
T Consensus       118 ~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  196 (333)
T 1mqb_A          118 YKPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRV  196 (333)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             CCCcEEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchh
Confidence            99999999999999999988654 35699999999999999999999999999999999999999999999999999854


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ......                                                                         .
T Consensus       197 ~~~~~~-------------------------------------------------------------------------~  203 (333)
T 1mqb_A          197 LEDDPE-------------------------------------------------------------------------A  203 (333)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hccccc-------------------------------------------------------------------------c
Confidence            211000                                                                         0


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      ........||+.|+|||++.+..++.++|||||||++|||++ |+.||.+......+..+. .....+....++.++.+|
T Consensus       204 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l  282 (333)
T 1mqb_A          204 TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAIN-DGFRLPTPMDCPSAIYQL  282 (333)
T ss_dssp             -------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHH-TTCCCCCCTTCBHHHHHH
T ss_pred             ccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHH-CCCcCCCcccCCHHHHHH
Confidence            000112357889999999999999999999999999999998 999998766544443333 333455556789999999


Q ss_pred             HHhhhcCCCCCcCCch
Q 004790          642 IRGLLVKEPQHRLGVK  657 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~  657 (730)
                      |.+||..||.+||++.
T Consensus       283 i~~~l~~~p~~Rps~~  298 (333)
T 1mqb_A          283 MMQCWQQERARRPKFA  298 (333)
T ss_dssp             HHHHTCSSTTTSCCHH
T ss_pred             HHHHcCCChhhCcCHH
Confidence            9999999999999953

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=3.5e-43  Score=364.78  Aligned_cols=245  Identities=22%  Similarity=0.309  Sum_probs=200.0

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc-ccc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE-TDR  404 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~-~~~  404 (730)
                      ..+..++|++++.||+|+||+||++++.  ++.||||+++...     ..+.+.+|+++++.++||||+++++++. .++
T Consensus        16 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   88 (278)
T 1byg_A           16 WALNMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG   88 (278)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEET--TEEEEEEECCCCC-------HHHHHTHHHHTTCCCTTBCCEEEEECCC--
T ss_pred             ccCChhhceEEeEEecCCCceEEEEEEc--CCEEEEEEecchh-----HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCC
Confidence            4466789999999999999999999885  6789999997543     3456789999999999999999999865 456


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|+||||+++++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++....
T Consensus        89 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~  168 (278)
T 1byg_A           89 GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS  168 (278)
T ss_dssp             CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-----
T ss_pred             ceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeecccccccc
Confidence            89999999999999998876533348899999999999999999999999999999999999999999999999884210


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      .                                                                               
T Consensus       169 ~-------------------------------------------------------------------------------  169 (278)
T 1byg_A          169 S-------------------------------------------------------------------------------  169 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+.........+. .....+....++..+++||.
T Consensus       170 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~  248 (278)
T 1byg_A          170 TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVE-KGYKMDAPDGCPPAVYEVMK  248 (278)
T ss_dssp             ------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHT-TTCCCCCCTTCCHHHHHHHH
T ss_pred             cccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh-cCCCCCCcccCCHHHHHHHH
Confidence            0011257889999999999999999999999999999998 999998765544443332 23334444578999999999


Q ss_pred             hhhcCCCCCcCCch
Q 004790          644 GLLVKEPQHRLGVK  657 (730)
Q Consensus       644 ~lL~~DP~~R~t~~  657 (730)
                      +||..||.+||++.
T Consensus       249 ~~l~~~p~~Rps~~  262 (278)
T 1byg_A          249 NCWHLDAAMRPSFL  262 (278)
T ss_dssp             HHTCSSGGGSCCHH
T ss_pred             HHhcCChhhCCCHH
Confidence            99999999999953

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.7e-43  Score=369.09  Aligned_cols=264  Identities=22%  Similarity=0.313  Sum_probs=190.2

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccc-----
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHF-----  400 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f-----  400 (730)
                      .+...+|++++.||+|+||.||+|++..+++.||||++.+..   ......+.+|+.+|+.+. ||||+++++++     
T Consensus        24 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~  100 (337)
T 3ll6_A           24 ELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNE---EEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKE  100 (337)
T ss_dssp             EETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESS---HHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTT
T ss_pred             eccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCc---hHHHHHHHHHHHHHHHhccCCChhhcccccccccc
Confidence            355578999999999999999999999999999999986543   244456789999999995 99999999988     


Q ss_pred             ---cccceeeEEeeecCCCCccccccc-cCCCCccHHHHHHhHHHHHHHHHHhHhcc--eeecccCCccEEecCCCceEE
Q 004790          401 ---ETDRFSCLVMEYCPGGDLHTLRQR-QPGKHFSEYAARFYAAEVLLALEYLHMLG--VVYRDLKPENVLVRDDGHIML  474 (730)
Q Consensus       401 ---~~~~~l~LVmEy~~GGsL~~ll~~-~~~~~lse~~a~~~~~qIl~AL~yLH~~g--IVHRDLKPeNILl~~~g~vKL  474 (730)
                         .....+|+||||+ +|+|.+++.. .....+++..++.++.||+.||.|||++|  |+||||||+||||+.++++||
T Consensus       101 ~~~~~~~~~~lv~e~~-~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl  179 (337)
T 3ll6_A          101 ESDTGQAEFLLLTELC-KGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKL  179 (337)
T ss_dssp             TSTTSSEEEEEEEECC-SEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEB
T ss_pred             ccccCCceEEEEEEec-CCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEE
Confidence               4566789999999 5788877654 23356999999999999999999999999  999999999999999999999


Q ss_pred             ecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCC
Q 004790          475 SDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTL  554 (730)
Q Consensus       475 ~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (730)
                      +|||++.............                                             .               
T Consensus       180 ~Dfg~~~~~~~~~~~~~~~---------------------------------------------~---------------  199 (337)
T 3ll6_A          180 CDFGSATTISHYPDYSWSA---------------------------------------------Q---------------  199 (337)
T ss_dssp             CCCTTCBCCSSCC-------------------------------------------------------------------
T ss_pred             ecCccceeccccCcccccc---------------------------------------------c---------------
Confidence            9999986532111100000                                             0               


Q ss_pred             cccccccccccccccccCcccCChhhh---ccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCC
Q 004790          555 PELVAEPTAARSMSFVGTHEYLAPEII---KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS  631 (730)
Q Consensus       555 ~~~~~e~~~~~~~s~vGT~~Y~APEvl---~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~  631 (730)
                          ...........+||+.|+|||++   .+..++.++|||||||++|||++|+.||.+....    .++......+..
T Consensus       200 ----~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~----~~~~~~~~~~~~  271 (337)
T 3ll6_A          200 ----RRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL----RIVNGKYSIPPH  271 (337)
T ss_dssp             ----------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC----------------CCCCTT
T ss_pred             ----ccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH----HhhcCcccCCcc
Confidence                00000112245799999999999   5666889999999999999999999999865433    333444555555


Q ss_pred             CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          632 PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       632 ~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      ...+..+++||++||..||.+||+    +.++++|
T Consensus       272 ~~~~~~~~~li~~~l~~~p~~Rps----~~e~l~~  302 (337)
T 3ll6_A          272 DTQYTVFHSLIRAMLQVNPEERLS----IAEVVHQ  302 (337)
T ss_dssp             CCSSGGGHHHHHHHSCSSGGGSCC----HHHHHHH
T ss_pred             cccchHHHHHHHHHccCChhhCcC----HHHHHHH
Confidence            677888999999999999999999    5677765

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-42  Score=365.29  Aligned_cols=246  Identities=24%  Similarity=0.380  Sum_probs=196.4

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|++.+.||+|+||+||++++.  ++.||||++....     ..+.+.+|+++|+.++||||+++++++.+  ..|
T Consensus         5 i~~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~   75 (307)
T 2eva_A            5 IDYKEIEVEEVVGRGAFGVVCKAKWR--AKDVAIKQIESES-----ERKAFIVELRQLSRVNHPNIVKLYGACLN--PVC   75 (307)
T ss_dssp             CCGGGEEEEEEEECCSSSEEEEEEET--TEEEEEEECSSTT-----HHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTE
T ss_pred             CCHhHeeeeeEeecCCCceEEEEEEC--CeeEEEEEecChh-----HHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcE
Confidence            45678999999999999999999985  5689999996542     33567899999999999999999999884  489


Q ss_pred             EEeeecCCCCccccccccCC-CCccHHHHHHhHHHHHHHHHHhHh---cceeecccCCccEEecCCCc-eEEeccccccc
Q 004790          408 LVMEYCPGGDLHTLRQRQPG-KHFSEYAARFYAAEVLLALEYLHM---LGVVYRDLKPENVLVRDDGH-IMLSDFDLSLR  482 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~-~~lse~~a~~~~~qIl~AL~yLH~---~gIVHRDLKPeNILl~~~g~-vKL~DFGlA~~  482 (730)
                      +||||++||+|.+++..... ..+++..+..++.||+.||.|||+   +||+||||||+|||++.++. +||+|||++..
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~  155 (307)
T 2eva_A           76 LVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACD  155 (307)
T ss_dssp             EEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---
T ss_pred             EEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccc
Confidence            99999999999998875422 247888999999999999999999   89999999999999998886 79999999842


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ...                                                                             
T Consensus       156 ~~~-----------------------------------------------------------------------------  158 (307)
T 2eva_A          156 IQT-----------------------------------------------------------------------------  158 (307)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccc-eeeeecccccCCCCCCCChhHHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT-LFNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~-l~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                        ......||+.|+|||++.+..++.++|||||||++|||++|+.||........ +..........+....++..+++|
T Consensus       159 --~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  236 (307)
T 2eva_A          159 --HMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESL  236 (307)
T ss_dssp             --------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCCCCBTTCCHHHHHH
T ss_pred             --ccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCCCcccccCHHHHHH
Confidence              00123689999999999999999999999999999999999999986543221 111111222233345678999999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHc
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      |.+||..||.+||++    +++++
T Consensus       237 i~~~l~~dp~~Rps~----~ell~  256 (307)
T 2eva_A          237 MTRCWSKDPSQRPSM----EEIVK  256 (307)
T ss_dssp             HHHHTCSSGGGSCCH----HHHHH
T ss_pred             HHHHhcCChhhCcCH----HHHHH
Confidence            999999999999995    55554

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=2.1e-42  Score=360.63  Aligned_cols=252  Identities=17%  Similarity=0.243  Sum_probs=202.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc-cccceeeE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF-ETDRFSCL  408 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f-~~~~~l~L  408 (730)
                      .++|++++.||+|+||.||+|++..+++.||||++......     ..+.+|+.+++.++|++++..+..+ ..+...|+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-----~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l   82 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH-----PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM   82 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSC-----CHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcch-----hHHHHHHHHHHHhhcCCCCCccccccCCCCceEE
Confidence            47899999999999999999999999999999998765322     2477899999999988866655544 67788899


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe---cCCCceEEecccccccccC
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV---RDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl---~~~g~vKL~DFGlA~~~~~  485 (730)
                      ||||+ +++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||+   +.++.+||+|||++.....
T Consensus        83 v~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~  160 (296)
T 3uzp_A           83 VMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD  160 (296)
T ss_dssp             EEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred             EEEec-CCCHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccc
Confidence            99999 99999988743 2569999999999999999999999999999999999999   4789999999999864321


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ......                                                                     .....
T Consensus       161 ~~~~~~---------------------------------------------------------------------~~~~~  171 (296)
T 3uzp_A          161 ARTHQH---------------------------------------------------------------------IPYRE  171 (296)
T ss_dssp             TTTCCB---------------------------------------------------------------------CCCCC
T ss_pred             cccccc---------------------------------------------------------------------ccccc
Confidence            100000                                                                     00001


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc---cceeeeecccccCCC---CCCCChhHH
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR---ATLFNVVGQQLRFPD---SPATSYASR  639 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~---~~l~~i~~~~~~~p~---~~~~s~~~~  639 (730)
                      .....||+.|+|||++.+..++.++|||||||++|||++|+.||.+....   ..+..+.......+.   ...++.++.
T Consensus       172 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  251 (296)
T 3uzp_A          172 NKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFA  251 (296)
T ss_dssp             SCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHH
T ss_pred             ccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHH
Confidence            22458999999999999999999999999999999999999999875432   233333333333331   245789999


Q ss_pred             HHHHhhhcCCCCCcCCch
Q 004790          640 DLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       640 dLI~~lL~~DP~~R~t~~  657 (730)
                      +||.+||..||.+||++.
T Consensus       252 ~li~~~l~~dp~~Rps~~  269 (296)
T 3uzp_A          252 TYLNFCRSLRFDDKPDYS  269 (296)
T ss_dssp             HHHHHHHTSCTTCCCCHH
T ss_pred             HHHHHHHhcCcCcCCCHH
Confidence            999999999999999964

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=2e-43  Score=394.04  Aligned_cols=262  Identities=24%  Similarity=0.345  Sum_probs=199.0

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      ++..+|++.+.||+|+||+||.. ...+++.||||++.+....      .+.+|+++|+.+ +||||+++++++.++..+
T Consensus        21 i~~~~y~~~~~LG~G~~G~V~~~-~~~~~~~vAvK~~~~~~~~------~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~   93 (432)
T 3p23_A           21 VGKISFCPKDVLGHGAEGTIVYR-GMFDNRDVAVKRILPECFS------FADREVQLLRESDEHPNVIRYFCTEKDRQFQ   93 (432)
T ss_dssp             ETTEEEEEEEEEEECGGGCEEEE-EESSSSEEEEEEECTTTEE------ECHHHHHHHHHSCCCTTBCCEEEEEEETTEE
T ss_pred             EccEEEecCCeeecCcCEEEEEE-EEeCCeEEEEEEECHHHHH------HHHHHHHHHHhccCCCCcCeEEEEEecCCEE
Confidence            45567999999999999997643 3456789999999764332      256799999999 899999999999999999


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---C--CceEEecccccc
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---D--GHIMLSDFDLSL  481 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~--g~vKL~DFGlA~  481 (730)
                      |||||||. |+|.+++.... ..+.+..++.++.||+.||.|||++|||||||||+||||+.   +  ..+||+|||+++
T Consensus        94 ~lv~E~~~-g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~  171 (432)
T 3p23_A           94 YIAIELCA-ATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCK  171 (432)
T ss_dssp             EEEEECCS-EEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEE
T ss_pred             EEEEECCC-CCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEeccccee
Confidence            99999995 69988877643 34556667889999999999999999999999999999953   2  357899999995


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      .......                                                                         
T Consensus       172 ~~~~~~~-------------------------------------------------------------------------  178 (432)
T 3p23_A          172 KLAVGRH-------------------------------------------------------------------------  178 (432)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             eccCCCc-------------------------------------------------------------------------
Confidence            4311000                                                                         


Q ss_pred             ccccccccccCcccCChhhhcc---CCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccC-CCCCCCCh
Q 004790          562 TAARSMSFVGTHEYLAPEIIKG---EGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRF-PDSPATSY  636 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g---~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~-p~~~~~s~  636 (730)
                      ........+||+.|+|||++.+   ..++.++|||||||++|||++ |..||...........+....... ......+.
T Consensus       179 ~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (432)
T 3p23_A          179 SFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLHPEKHEDV  258 (432)
T ss_dssp             -------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHHTTCCCCTTSCTTCHHHH
T ss_pred             ceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHhccCCccccCccccccH
Confidence            0011224589999999999984   567889999999999999999 999996543322211111111111 11122345


Q ss_pred             hHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          637 ASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       637 ~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      .+++||.+||..||.+||+    ++++++||||..++|.
T Consensus       259 ~~~~li~~~L~~dP~~Rps----~~evl~hp~f~~~~~~  293 (432)
T 3p23_A          259 IARELIEKMIAMDPQKRPS----AKHVLKHPFFWSLEKQ  293 (432)
T ss_dssp             HHHHHHHHHSCSSGGGSCC----HHHHHTSTTTCCHHHH
T ss_pred             HHHHHHHHHHhCCHhhCCC----HHHHHhCccccChHHH
Confidence            6889999999999999999    7999999999998884

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=5.9e-43  Score=396.05  Aligned_cols=276  Identities=18%  Similarity=0.243  Sum_probs=216.4

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC-CCCccccccccccceee
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH-PFLPTLYTHFETDRFSC  407 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H-PnIV~L~~~f~~~~~l~  407 (730)
                      ..++|+++++||+|+||.||+|++..+++.||||++......     ..+.+|+++++.|.| ++|+.+..++......|
T Consensus         5 i~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-----~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~   79 (483)
T 3sv0_A            5 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH-----PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNV   79 (483)
T ss_dssp             ETTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS-----CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEE
T ss_pred             cCCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEE
Confidence            347899999999999999999999999999999998765332     236789999999977 55666666677888999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEe---cCCCceEEeccccccccc
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLV---RDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl---~~~g~vKL~DFGlA~~~~  484 (730)
                      |||||+ |++|.+++... ...+++..++.|+.||+.||+|||++|||||||||+||||   +.++++||+|||+++.+.
T Consensus        80 lvme~~-g~sL~~ll~~~-~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~  157 (483)
T 3sv0_A           80 LVMDLL-GPSLEDLFNFC-SRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYR  157 (483)
T ss_dssp             EEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred             EEEECC-CCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceecc
Confidence            999999 99999988753 3579999999999999999999999999999999999999   688999999999996532


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      .......                                                                     ....
T Consensus       158 ~~~~~~~---------------------------------------------------------------------~~~~  168 (483)
T 3sv0_A          158 DTSTHQH---------------------------------------------------------------------IPYR  168 (483)
T ss_dssp             CTTTCCB---------------------------------------------------------------------CCCC
T ss_pred             CCccccc---------------------------------------------------------------------cccc
Confidence            1100000                                                                     0001


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccc---eeeeecccccCC---CCCCCChhH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT---LFNVVGQQLRFP---DSPATSYAS  638 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~---l~~i~~~~~~~p---~~~~~s~~~  638 (730)
                      .....+||+.|+|||++.+..++.++|||||||+||||++|+.||.+......   +..+........   ....++.++
T Consensus       169 ~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l  248 (483)
T 3sv0_A          169 ENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEF  248 (483)
T ss_dssp             CCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHH
T ss_pred             cccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHH
Confidence            12246899999999999999999999999999999999999999988654322   222222211111   113568899


Q ss_pred             HHHHHhhhcCCCCCcCCchhc---HHH---HHcCCCCCCCCcchhccC
Q 004790          639 RDLIRGLLVKEPQHRLGVKRG---ATE---IKQHPFFEGVNWALIRCS  680 (730)
Q Consensus       639 ~dLI~~lL~~DP~~R~t~~~~---a~e---lL~HPfF~~v~w~~~r~~  680 (730)
                      .+||.+||..||++||++.+.   +++   -+.|+|+..+||..++..
T Consensus       249 ~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~~~~~~~~~dW~~~~~~  296 (483)
T 3sv0_A          249 ASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVFDWTILKYQ  296 (483)
T ss_dssp             HHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCCSSCCHHHHHTC-
T ss_pred             HHHHHHHhcCChhhCcCHHHHHHHHHHHHHHcCCCccCCcCchhhccc
Confidence            999999999999999997532   222   245899999999988544

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=2.4e-42  Score=363.57  Aligned_cols=232  Identities=28%  Similarity=0.447  Sum_probs=192.2

Q ss_pred             cCCeEEE-eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHH-HhcCCCCCccccccccc----c
Q 004790          330 MSHFRLL-KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLLDHPFLPTLYTHFET----D  403 (730)
Q Consensus       330 ~~~y~il-~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL-~~L~HPnIV~L~~~f~~----~  403 (730)
                      .++|.++ +.||+|+||.||+|++..+++.||||++...        ..+.+|+.++ +.++||||++++++|..    +
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~   87 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYENLYAGR   87 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc--------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCC
Confidence            4678888 7899999999999999999999999999653        2356788887 66799999999999986    7


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---CCceEEeccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---DGHIMLSDFDLS  480 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~g~vKL~DFGlA  480 (730)
                      ..+|+||||++||+|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.   ++.+||+|||++
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a  167 (299)
T 3m2w_A           88 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA  167 (299)
T ss_dssp             EEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred             ceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEeccccc
Confidence            88999999999999999988765567999999999999999999999999999999999999998   789999999987


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      ...                                                                             
T Consensus       168 ~~~-----------------------------------------------------------------------------  170 (299)
T 3m2w_A          168 KET-----------------------------------------------------------------------------  170 (299)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            321                                                                             


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcccee----eeecccccCCC--CCCC
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF----NVVGQQLRFPD--SPAT  634 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~----~i~~~~~~~p~--~~~~  634 (730)
                                           .+..++.++|||||||++|||++|+.||.+........    .+......++.  ...+
T Consensus       171 ---------------------~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (299)
T 3m2w_A          171 ---------------------TGEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEV  229 (299)
T ss_dssp             ---------------------TTCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSCTTCCSSCHHHHTTS
T ss_pred             ---------------------ccccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhccccCCchhcccC
Confidence                                 01235678999999999999999999998765433222    12222222221  1467


Q ss_pred             ChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          635 SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       635 s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      +.++++||.+||..||.+||+    +.|+++||||..
T Consensus       230 ~~~~~~li~~~l~~dP~~Rps----~~e~l~hp~~~~  262 (299)
T 3m2w_A          230 SEEVKMLIRNLLKTEPTQRMT----ITEFMNHPWIMQ  262 (299)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCC----HHHHHTSHHHHT
T ss_pred             CHHHHHHHHHHcccChhhCCC----HHHHhcChhhcc
Confidence            899999999999999999999    799999999986

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=2e-42  Score=368.22  Aligned_cols=266  Identities=25%  Similarity=0.364  Sum_probs=193.2

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHH--HHhcCCCCCcccccc-----
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI--LQLLDHPFLPTLYTH-----  399 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~I--L~~L~HPnIV~L~~~-----  399 (730)
                      .+.+++|++++.||+|+||+||+|++  +++.||||++.....      ..+..|.++  +..++||||+++++.     
T Consensus         9 ~~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~------~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~   80 (336)
T 3g2f_A            9 SLDLDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFANR------QNFINEKNIYRVPLMEHDNIARFIVGDERVT   80 (336)
T ss_dssp             CCCTTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGGH------HHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC
T ss_pred             CcChHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccch------hhHHHHHHHHHHHhccCcchhhheecccccc
Confidence            35678999999999999999999987  578999999976432      123334444  445899999999974     


Q ss_pred             ccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhc---------ceeecccCCccEEecCCC
Q 004790          400 FETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML---------GVVYRDLKPENVLVRDDG  470 (730)
Q Consensus       400 f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~---------gIVHRDLKPeNILl~~~g  470 (730)
                      +.....+|||||||++|+|.+++...   .+++..++.++.||+.||.|||++         ||+||||||+||||+.++
T Consensus        81 ~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~  157 (336)
T 3g2f_A           81 ADGRMEYLLVMEYYPNGSLXKYLSLH---TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDG  157 (336)
T ss_dssp             TTSCEEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTS
T ss_pred             cCCCceEEEEEecCCCCcHHHHHhhc---ccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCC
Confidence            34456789999999999999988764   468889999999999999999999         999999999999999999


Q ss_pred             ceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCC
Q 004790          471 HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLP  550 (730)
Q Consensus       471 ~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (730)
                      .+||+|||+++.+........                                                           
T Consensus       158 ~~kL~DFG~a~~~~~~~~~~~-----------------------------------------------------------  178 (336)
T 3g2f_A          158 TCVISDFGLSMRLTGNRLVRP-----------------------------------------------------------  178 (336)
T ss_dssp             CEEECCCTTCEECSSSSCC-------------------------------------------------------------
T ss_pred             cEEEeeccceeecccccccCc-----------------------------------------------------------
Confidence            999999999965321100000                                                           


Q ss_pred             CCCCcccccccccccccccccCcccCChhhhcc-------CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeee-
Q 004790          551 SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKG-------EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV-  622 (730)
Q Consensus       551 ~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g-------~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~-  622 (730)
                               ..........+||+.|+|||++.+       ..++.++|||||||++|||++|..||........+.... 
T Consensus       179 ---------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~  249 (336)
T 3g2f_A          179 ---------GEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQ  249 (336)
T ss_dssp             ----------------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTH
T ss_pred             ---------cccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhh
Confidence                     000011234589999999999987       346678999999999999999977765433322211110 


Q ss_pred             -------------------cccccCCCC----CCCChhHHHHHHhhhcCCCCCcCCchhcHHHH--HcCCCCCC
Q 004790          623 -------------------GQQLRFPDS----PATSYASRDLIRGLLVKEPQHRLGVKRGATEI--KQHPFFEG  671 (730)
Q Consensus       623 -------------------~~~~~~p~~----~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~el--L~HPfF~~  671 (730)
                                         .....+|..    ...+.++++||.+||..||++||++.+.++.+  +.++|-++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~  323 (336)
T 3g2f_A          250 TEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERN  323 (336)
T ss_dssp             HHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC-
T ss_pred             cccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhc
Confidence                               011111211    11334799999999999999999954332222  34677664

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=1.1e-42  Score=389.29  Aligned_cols=254  Identities=25%  Similarity=0.334  Sum_probs=208.9

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      +.+..++|++.+.||+|+||.||+|++..+ ..||||+++.....    .+.+.+|+++|+.++||||+++++++.+ ..
T Consensus       179 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~-~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~  252 (452)
T 1fmk_A          179 WEIPRESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTMS----PEAFLQEAQVMKKLRHEKLVQLYAVVSE-EP  252 (452)
T ss_dssp             SBCCGGGEEEEEEEEECSSCEEEEEEETTT-EEEEEEECCTTSSC----HHHHHHHHHHHHHCCCTTBCCEEEEECS-SS
T ss_pred             cccChhHceeeeeecCCCCeEEEEEEECCC-ceEEEEEeccCCCC----HHHHHHHHHHHHhCCCCCEeeEEEEEcC-Cc
Confidence            345668899999999999999999999864 56999999765432    2457899999999999999999999876 67


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|||||||++|+|.+++....+..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....
T Consensus       253 ~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~  332 (452)
T 1fmk_A          253 IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIED  332 (452)
T ss_dssp             CEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC----
T ss_pred             eEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCC
Confidence            89999999999999998765445689999999999999999999999999999999999999999999999999853210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ..                                                                           ...
T Consensus       333 ~~---------------------------------------------------------------------------~~~  337 (452)
T 1fmk_A          333 NE---------------------------------------------------------------------------YTA  337 (452)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Cc---------------------------------------------------------------------------eec
Confidence            00                                                                           000


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~  644 (730)
                      .....+|+.|+|||++.+..++.++|||||||+||||++ |+.||.+....+.+..+. ...+.+....++..+.+||.+
T Consensus       338 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~li~~  416 (452)
T 1fmk_A          338 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVE-RGYRMPCPPECPESLHDLMCQ  416 (452)
T ss_dssp             -----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHH-TTCCCCCCTTSCHHHHHHHHH
T ss_pred             ccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHH
Confidence            112357889999999999999999999999999999999 999999876655544433 334555556789999999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHc
Q 004790          645 LLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~  665 (730)
                      ||..||++||++    ++|++
T Consensus       417 cl~~dP~~Rpt~----~~l~~  433 (452)
T 1fmk_A          417 CWRKEPEERPTF----EYLQA  433 (452)
T ss_dssp             HTCSSGGGSCCH----HHHHH
T ss_pred             HccCChhhCcCH----HHHHH
Confidence            999999999995    55544

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=1.3e-42  Score=386.69  Aligned_cols=256  Identities=26%  Similarity=0.342  Sum_probs=192.9

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +.|.+.+.||+|+||+||.+. ..+++.||||++....      ...+.+|+.+|+.+ +||||+++++++.+++.+|||
T Consensus        15 ~~~~~~~~LG~G~~g~V~~~~-~~~g~~vAvK~~~~~~------~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv   87 (434)
T 2rio_A           15 NLVVSEKILGYGSSGTVVFQG-SFQGRPVAVKRMLIDF------CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIA   87 (434)
T ss_dssp             SCEEEEEEEEECSTTCEEEEE-ESSSSEEEEEEEEGGG------HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEE
T ss_pred             heeeccCeEeeCCCeEEEEEE-EECCeEEEEEEEcHHH------HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEE
Confidence            456667899999999998754 4568899999997643      23467899999876 899999999999999999999


Q ss_pred             eeecCCCCccccccccCCC-----CccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC-------------Cc
Q 004790          410 MEYCPGGDLHTLRQRQPGK-----HFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD-------------GH  471 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~-----~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~-------------g~  471 (730)
                      ||||. |+|.+++......     ..++..++.++.||+.||+|||++|||||||||+||||+.+             ++
T Consensus        88 ~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~  166 (434)
T 2rio_A           88 LELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLR  166 (434)
T ss_dssp             ECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCE
T ss_pred             EecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceE
Confidence            99994 6999988764211     11333456799999999999999999999999999999754             48


Q ss_pred             eEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCC
Q 004790          472 IMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPS  551 (730)
Q Consensus       472 vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (730)
                      +||+|||+++........                                                              
T Consensus       167 ~kL~DFG~a~~~~~~~~~--------------------------------------------------------------  184 (434)
T 2rio_A          167 ILISDFGLCKKLDSGQSS--------------------------------------------------------------  184 (434)
T ss_dssp             EEECCCTTCEECCC------------------------------------------------------------------
T ss_pred             EEEcccccceecCCCCcc--------------------------------------------------------------
Confidence            999999998643110000                                                              


Q ss_pred             CCCcccccccccccccccccCcccCChhhhcc-------CCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeec
Q 004790          552 STLPELVAEPTAARSMSFVGTHEYLAPEIIKG-------EGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVG  623 (730)
Q Consensus       552 ~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g-------~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~  623 (730)
                                ........+||+.|+|||++.+       ..++.++|||||||++|||++ |+.||.+.....  .+++.
T Consensus       185 ----------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~--~~i~~  252 (434)
T 2rio_A          185 ----------FRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE--SNIIR  252 (434)
T ss_dssp             --------------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH--HHHHH
T ss_pred             ----------ceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH--HHHhc
Confidence                      0001123589999999999976       568999999999999999998 999997653322  23333


Q ss_pred             ccccCCCC-----CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          624 QQLRFPDS-----PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       624 ~~~~~p~~-----~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ....++..     ..++.++++||.+||..||.+||+    +.++++||||...
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps----~~eil~hp~f~~~  302 (434)
T 2rio_A          253 GIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPT----AMKVLRHPLFWPK  302 (434)
T ss_dssp             TCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCC----HHHHHTSGGGSCH
T ss_pred             CCCCcccccccccccchHHHHHHHHHHhhCChhhCCC----HHHHHhCCccCCc
Confidence            33333322     123578999999999999999999    7999999999764

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.9e-43  Score=376.39  Aligned_cols=251  Identities=19%  Similarity=0.254  Sum_probs=198.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCC--------CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccc-----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSST--------RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTL-----  396 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t--------~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L-----  396 (730)
                      .++|++++.||+|+||.||+|++..+        ++.||||++.+.        ..+.+|+++|+.++||||+++     
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--------~~~~~E~~~l~~l~h~niv~~~~~~~  112 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--------GRLFNEQNFFQRAAKPLQVNKWKKLY  112 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT--------STHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--------chHHHHHHHHHHhcccchhhhhhhhc
Confidence            47899999999999999999999874        789999999764        246789999999999999984     


Q ss_pred             ----------cccccc-cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEE
Q 004790          397 ----------YTHFET-DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVL  465 (730)
Q Consensus       397 ----------~~~f~~-~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNIL  465 (730)
                                ++++.. +..+||||||+ |++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||
T Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl  191 (352)
T 2jii_A          113 STPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIF  191 (352)
T ss_dssp             TCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEE
T ss_pred             cCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEE
Confidence                      444443 67899999999 999999988765567999999999999999999999999999999999999


Q ss_pred             ecCCC--ceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCC
Q 004790          466 VRDDG--HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKP  543 (730)
Q Consensus       466 l~~~g--~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (730)
                      ++.++  .+||+|||+++.+........                                                    
T Consensus       192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~----------------------------------------------------  219 (352)
T 2jii_A          192 VDPEDQSQVTLAGYGFAFRYCPSGKHVA----------------------------------------------------  219 (352)
T ss_dssp             EETTEEEEEEECCGGGCBCSSGGGCCCC----------------------------------------------------
T ss_pred             EcCCCCceEEEecCcceeeccCCCcccc----------------------------------------------------
Confidence            99998  999999999964321100000                                                    


Q ss_pred             CccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCC-Cccceeeee
Q 004790          544 RSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG-NRATLFNVV  622 (730)
Q Consensus       544 ~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~-~~~~l~~i~  622 (730)
                                       ..........||+.|+|||++.+..++.++|||||||+||||++|+.||.+.. ....+....
T Consensus       220 -----------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~  282 (352)
T 2jii_A          220 -----------------YVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQK  282 (352)
T ss_dssp             -----------------CCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHH
T ss_pred             -----------------ccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHH
Confidence                             00011123589999999999999999999999999999999999999998764 222222211


Q ss_pred             c----ccccCC----CCCCCChhHHHHHHhhhcCCCCCcCCchh
Q 004790          623 G----QQLRFP----DSPATSYASRDLIRGLLVKEPQHRLGVKR  658 (730)
Q Consensus       623 ~----~~~~~p----~~~~~s~~~~dLI~~lL~~DP~~R~t~~~  658 (730)
                      .    ....++    .+..++.++++||.+||..||.+||++.+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~  326 (352)
T 2jii_A          283 QKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAM  326 (352)
T ss_dssp             HHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHH
T ss_pred             HhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHH
Confidence            1    111111    11246899999999999999999999643

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=1.7e-42  Score=368.30  Aligned_cols=252  Identities=23%  Similarity=0.278  Sum_probs=203.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEE----CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc--cc
Q 004790          331 SHFRLLKRLGCGDIGSVYLSEL----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET--DR  404 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~----~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~--~~  404 (730)
                      ..|++++.||+|+||+||++.+    ..+++.||||++.+..  .......+.+|+++|+.++||||+++++++.+  ..
T Consensus        31 r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  108 (318)
T 3lxp_A           31 RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA--GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAA  108 (318)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTT
T ss_pred             HHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc--ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCc
Confidence            3459999999999999988864    4578899999997653  33455678999999999999999999999986  46


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|+||||+++|+|.+++...   .+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++....
T Consensus       109 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~  185 (318)
T 3lxp_A          109 SLQLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  185 (318)
T ss_dssp             EEEEEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECC
T ss_pred             eEEEEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCcccccccc
Confidence            889999999999999988764   58999999999999999999999999999999999999999999999999985431


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ....                                                                         ...
T Consensus       186 ~~~~-------------------------------------------------------------------------~~~  192 (318)
T 3lxp_A          186 EGHE-------------------------------------------------------------------------YYR  192 (318)
T ss_dssp             TTCS-------------------------------------------------------------------------EEE
T ss_pred             cccc-------------------------------------------------------------------------ccc
Confidence            1000                                                                         000


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCc--------------cceeeeecccccCCC
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR--------------ATLFNVVGQQLRFPD  630 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~--------------~~l~~i~~~~~~~p~  630 (730)
                      ......||+.|+|||++.+..++.++|||||||++|+|++|..||......              ..+...+......+.
T Consensus       193 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (318)
T 3lxp_A          193 VREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPR  272 (318)
T ss_dssp             C---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCC
T ss_pred             cccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCC
Confidence            112346889999999999999999999999999999999999999753211              011122233344555


Q ss_pred             CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHH
Q 004790          631 SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIK  664 (730)
Q Consensus       631 ~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL  664 (730)
                      ...++.++.+||.+||..||.+||++    .+++
T Consensus       273 ~~~~~~~l~~li~~~l~~dP~~Rps~----~ell  302 (318)
T 3lxp_A          273 PDKCPAEVYHLMKNCWETEASFRPTF----ENLI  302 (318)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCH----HHHH
T ss_pred             CccccHHHHHHHHHHcCCCcccCcCH----HHHH
Confidence            56789999999999999999999994    5555

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=2.9e-44  Score=384.25  Aligned_cols=247  Identities=19%  Similarity=0.213  Sum_probs=192.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh-----hHHHHHHHHHHHHHHHhcC-------------
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA-----SRKKLTRAQTEREILQLLD-------------  389 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~-----~~~~~~~~~~E~~IL~~L~-------------  389 (730)
                      +..++|++++.||+|+||+||+|++  +++.||||++.+....     .....+.+.+|+.+|+.++             
T Consensus        17 ~~~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~ni   94 (336)
T 2vuw_A           17 LPTEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGF   94 (336)
T ss_dssp             SCHHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCB
T ss_pred             cccccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCch
Confidence            3457899999999999999999998  6789999999875321     1223356788999998886             


Q ss_pred             -------------CCCCccccccccc-------------cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHH
Q 004790          390 -------------HPFLPTLYTHFET-------------DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVL  443 (730)
Q Consensus       390 -------------HPnIV~L~~~f~~-------------~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl  443 (730)
                                   ||||++++++|++             +..+|||||||++|+|...+.+   ..+++..++.|+.||+
T Consensus        95 v~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~  171 (336)
T 2vuw_A           95 IGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLT  171 (336)
T ss_dssp             CCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHH
T ss_pred             hhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHH
Confidence                         6777777777765             7899999999999977665543   4689999999999999


Q ss_pred             HHHHHhH-hcceeecccCCccEEecCCC--------------------ceEEecccccccccCCCcccccCCCCCCCCCC
Q 004790          444 LALEYLH-MLGVVYRDLKPENVLVRDDG--------------------HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRR  502 (730)
Q Consensus       444 ~AL~yLH-~~gIVHRDLKPeNILl~~~g--------------------~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~  502 (730)
                      .||.||| ++|||||||||+||||+.+|                    ++||+|||+|+...                  
T Consensus       172 ~aL~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~------------------  233 (336)
T 2vuw_A          172 ASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLER------------------  233 (336)
T ss_dssp             HHHHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEE------------------
T ss_pred             HHHHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecC------------------
Confidence            9999999 99999999999999999887                    99999999985321                  


Q ss_pred             CCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhc
Q 004790          503 GPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIK  582 (730)
Q Consensus       503 ~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~  582 (730)
                                                                                     ....+||+.|+|||++.
T Consensus       234 ---------------------------------------------------------------~~~~~gt~~y~aPE~~~  250 (336)
T 2vuw_A          234 ---------------------------------------------------------------DGIVVFCDVSMDEDLFT  250 (336)
T ss_dssp             ---------------------------------------------------------------TTEEECCCCTTCSGGGC
T ss_pred             ---------------------------------------------------------------CCcEEEeecccChhhhc
Confidence                                                                           01248999999999999


Q ss_pred             cCCCCCcceeechhHH-HHHHhhCCCCCCCCCCcc-ceeeeecc-ccc----CCCCCCCChhHHHHHHhhhcCCCCCcCC
Q 004790          583 GEGHGSAVDWWTFGIF-LHELLYGKTPFKGSGNRA-TLFNVVGQ-QLR----FPDSPATSYASRDLIRGLLVKEPQHRLG  655 (730)
Q Consensus       583 g~~~~~~sDIWSLG~i-LyELltG~~PF~g~~~~~-~l~~i~~~-~~~----~p~~~~~s~~~~dLI~~lL~~DP~~R~t  655 (730)
                      +.. +.++||||||++ .++++.|..||.+..... ....+... ...    .+....++.++++||++||++|     |
T Consensus       251 g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d-----s  324 (336)
T 2vuw_A          251 GDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS-----S  324 (336)
T ss_dssp             CCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS-----S
T ss_pred             CCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC-----C
Confidence            877 899999998777 888999999996421000 11111100 000    0111245788999999999987     6


Q ss_pred             chhcHHHHH-cCCCCC
Q 004790          656 VKRGATEIK-QHPFFE  670 (730)
Q Consensus       656 ~~~~a~elL-~HPfF~  670 (730)
                          |+|+| +||||+
T Consensus       325 ----a~e~l~~Hp~f~  336 (336)
T 2vuw_A          325 ----ATDLLCQHSLFK  336 (336)
T ss_dssp             ----HHHHHHHCGGGC
T ss_pred             ----HHHHHhcCCCcC
Confidence                89999 999995

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.8e-42  Score=377.29  Aligned_cols=251  Identities=17%  Similarity=0.250  Sum_probs=197.1

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCC---CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc-ccccee
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSST---RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF-ETDRFS  406 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t---~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f-~~~~~l  406 (730)
                      ..|++.+.||+|+||+||+|++..+   +..||+|+++...  .......+.+|+.+|+.++||||+++++++ ..++..
T Consensus        89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~  166 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT--DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP  166 (373)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCS--CSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCC
T ss_pred             ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCe
Confidence            4588999999999999999987543   3468999986532  234556788999999999999999999975 556788


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      |+||||+++|+|.+++... ...+++..++.++.||+.||.|||++||+||||||+||||+.++++||+|||+++.....
T Consensus       167 ~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~  245 (373)
T 3c1x_A          167 LVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK  245 (373)
T ss_dssp             EEEEECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred             EEEEECCCCCCHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeecccccccccc
Confidence            9999999999999988654 356889999999999999999999999999999999999999999999999998542110


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ...                                                                        .....
T Consensus       246 ~~~------------------------------------------------------------------------~~~~~  253 (373)
T 3c1x_A          246 EFD------------------------------------------------------------------------SVHNK  253 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc------------------------------------------------------------------------ccccc
Confidence            000                                                                        00011


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      ....||+.|+|||++.+..++.++|||||||++|||++ |.+||.+.+..+....+..+. ..+....++..+.+||.+|
T Consensus       254 ~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~-~~~~p~~~~~~l~~li~~c  332 (373)
T 3c1x_A          254 TGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR-RLLQPEYCPDPLYEVMLKC  332 (373)
T ss_dssp             ----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTC-CCCCCTTCCHHHHHHHHHH
T ss_pred             CCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHHH
Confidence            22467899999999999999999999999999999999 788888776655544443332 3333456789999999999


Q ss_pred             hcCCCCCcCCch
Q 004790          646 LVKEPQHRLGVK  657 (730)
Q Consensus       646 L~~DP~~R~t~~  657 (730)
                      |..||++||++.
T Consensus       333 l~~dp~~RPs~~  344 (373)
T 3c1x_A          333 WHPKAEMRPSFS  344 (373)
T ss_dssp             TCSSGGGSCCHH
T ss_pred             cCCChhhCcCHH
Confidence            999999999954

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=7.2e-43  Score=386.45  Aligned_cols=255  Identities=17%  Similarity=0.163  Sum_probs=200.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC-CCCccccc----------
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH-PFLPTLYT----------  398 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H-PnIV~L~~----------  398 (730)
                      ...|.+.+.||+|+||+||+|++..+++.||||++...........+.+.+|+.+++.+.| .|+..++.          
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~  156 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  156 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred             ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence            3468899999999999999999999999999999985444444446678899999999987 32222111          


Q ss_pred             -----------cccc-----cceeeEEeeecCCCCcccccc-----ccCCCCccHHHHHHhHHHHHHHHHHhHhcceeec
Q 004790          399 -----------HFET-----DRFSCLVMEYCPGGDLHTLRQ-----RQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYR  457 (730)
Q Consensus       399 -----------~f~~-----~~~l~LVmEy~~GGsL~~ll~-----~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHR  457 (730)
                                 ++..     ...+|++|+++ +++|.++++     ......+++..+..++.||+.||+|||++|||||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHr  235 (413)
T 3dzo_A          157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT  235 (413)
T ss_dssp             EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred             cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence                       1121     23467788876 889998875     2234568888999999999999999999999999


Q ss_pred             ccCCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccc
Q 004790          458 DLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNK  537 (730)
Q Consensus       458 DLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~  537 (730)
                      ||||+||||+.+|.+||+|||+++....                                                    
T Consensus       236 DiKp~NILl~~~~~~kL~DFG~a~~~~~----------------------------------------------------  263 (413)
T 3dzo_A          236 YLRPVDIVLDQRGGVFLTGFEHLVRDGA----------------------------------------------------  263 (413)
T ss_dssp             CCCGGGEEECTTCCEEECCGGGCEETTE----------------------------------------------------
T ss_pred             CcccceEEEecCCeEEEEeccceeecCC----------------------------------------------------
Confidence            9999999999999999999999853110                                                    


Q ss_pred             cccCCCCccCCCCCCCCcccccccccccccccccCcccCChhhh----------ccCCCCCcceeechhHHHHHHhhCCC
Q 004790          538 KKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEII----------KGEGHGSAVDWWTFGIFLHELLYGKT  607 (730)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl----------~g~~~~~~sDIWSLG~iLyELltG~~  607 (730)
                                                 ...+.+| +.|+|||++          .+..++.++|||||||++|||++|+.
T Consensus       264 ---------------------------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~  315 (413)
T 3dzo_A          264 ---------------------------SAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADL  315 (413)
T ss_dssp             ---------------------------EECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSC
T ss_pred             ---------------------------ccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCC
Confidence                                       0123578 999999999          45557889999999999999999999


Q ss_pred             CCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          608 PFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       608 PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                      ||.+.+.......++      .....++.++++||.+||..||.+||+    +.++++||||+.+...
T Consensus       316 Pf~~~~~~~~~~~~~------~~~~~~~~~~~~li~~~l~~dP~~Rpt----~~~~l~~~~~~~~~~~  373 (413)
T 3dzo_A          316 PNTDDAALGGSEWIF------RSCKNIPQPVRALLEGFLRYPKEDRLL----PLQAMETPEYEQLRTE  373 (413)
T ss_dssp             CCCTTGGGSCSGGGG------SSCCCCCHHHHHHHHHHTCSSGGGSCC----HHHHTTSHHHHHHHHH
T ss_pred             CCCCcchhhhHHHHH------hhcccCCHHHHHHHHHHccCChhhCcC----HHHHHhCHHHHHHHHH
Confidence            998765544443332      233467899999999999999999999    7999999999986543

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7e-42  Score=363.22  Aligned_cols=250  Identities=22%  Similarity=0.324  Sum_probs=192.1

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHh--cCCCCCcccccccccc----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL--LDHPFLPTLYTHFETD----  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~--L~HPnIV~L~~~f~~~----  403 (730)
                      .++|++++.||+|+||.||+|++.  ++.||||++.....      ....+|.+++..  ++||||+++++++...    
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~------~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~  107 (337)
T 3mdy_A           36 AKQIQMVKQIGKGRYGEVWMGKWR--GEKVAVKVFFTTEE------ASWFRETEIYQTVLMRHENILGFIAADIKGTGSW  107 (337)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEET--TEEEEEEEEEGGGH------HHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGG
T ss_pred             ccceEEEeEeecCCCeEEEEEEEC--CceEEEEEEecccc------chhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCC
Confidence            468999999999999999999986  78899999965432      223456666655  4999999999998876    


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhc--------ceeecccCCccEEecCCCceEEe
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML--------GVVYRDLKPENVLVRDDGHIMLS  475 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~--------gIVHRDLKPeNILl~~~g~vKL~  475 (730)
                      ..+|+||||++||+|.+++...   .+++..++.++.||+.||.|||++        ||+||||||+||||+.++++||+
T Consensus       108 ~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~  184 (337)
T 3mdy_A          108 TQLYLITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIA  184 (337)
T ss_dssp             CEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEEC
T ss_pred             CceEEEEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEE
Confidence            7899999999999999998764   699999999999999999999998        99999999999999999999999


Q ss_pred             cccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCc
Q 004790          476 DFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLP  555 (730)
Q Consensus       476 DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (730)
                      |||++..+......                                                                  
T Consensus       185 Dfg~a~~~~~~~~~------------------------------------------------------------------  198 (337)
T 3mdy_A          185 DLGLAVKFISDTNE------------------------------------------------------------------  198 (337)
T ss_dssp             CCTTCEECC-----------------------------------------------------------------------
T ss_pred             eCCCceeecccccc------------------------------------------------------------------
Confidence            99998543110000                                                                  


Q ss_pred             ccccccccccccccccCcccCChhhhccCCCCCc------ceeechhHHHHHHhhC----------CCCCCCCCCcccee
Q 004790          556 ELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSA------VDWWTFGIFLHELLYG----------KTPFKGSGNRATLF  619 (730)
Q Consensus       556 ~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~------sDIWSLG~iLyELltG----------~~PF~g~~~~~~l~  619 (730)
                            ........+||+.|+|||++.+..++..      +|||||||++|||++|          +.||..........
T Consensus       199 ------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~  272 (337)
T 3mdy_A          199 ------VDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSY  272 (337)
T ss_dssp             ----------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred             ------ccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCch
Confidence                  0001123589999999999998877665      9999999999999999          67776543322211


Q ss_pred             ee----e-cccc--cCCC---CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          620 NV----V-GQQL--RFPD---SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       620 ~i----~-~~~~--~~p~---~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      ..    + ....  .++.   ...++.++.+||.+||..||.+||+    +.++++|
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps----~~ell~~  325 (337)
T 3mdy_A          273 EDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLT----ALRVKKT  325 (337)
T ss_dssp             HHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCC----HHHHHHH
T ss_pred             hhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCC----HHHHHHH
Confidence            11    1 1111  1111   1134567899999999999999999    5666553

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=3.4e-42  Score=393.81  Aligned_cols=251  Identities=25%  Similarity=0.340  Sum_probs=209.7

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      .+.+..++|++.++||+|+||.||+|++..+ ..||||+++.....    .+.+.+|+++|+.|+||||+++++++.+ .
T Consensus       261 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~-~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~~~~~~~~-~  334 (535)
T 2h8h_A          261 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTMS----PEAFLQEAQVMKKLRHEKLVQLYAVVSE-E  334 (535)
T ss_dssp             CSBCCGGGEEEEEEEEECSSEEEEEEEETTT-EEEEEEEECTTSSC----HHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             ceecchhhhhhheecccCCCeEEEEEEECCC-ceEEEEEeCCCCCC----HHHHHHHHHHHHhCCCCCEeeEEEEEee-c
Confidence            3456678999999999999999999999864 56999999765432    2457899999999999999999999876 6


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|||||||.+|+|.+++....+..+++..+..++.||+.||+|||++|||||||||+||||+.++.+||+|||+++...
T Consensus       335 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~  414 (535)
T 2h8h_A          335 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE  414 (535)
T ss_dssp             SCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCC
T ss_pred             cceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecC
Confidence            78999999999999999876544568999999999999999999999999999999999999999999999999985321


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ..                                                                           ...
T Consensus       415 ~~---------------------------------------------------------------------------~~~  419 (535)
T 2h8h_A          415 DN---------------------------------------------------------------------------EYT  419 (535)
T ss_dssp             CH---------------------------------------------------------------------------HHH
T ss_pred             CC---------------------------------------------------------------------------cee
Confidence            00                                                                           000


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ......+|..|+|||++.+..++.++|||||||+||||++ |+.||.+....+.+..+ ....+.+....++.++.+||.
T Consensus       420 ~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i-~~~~~~~~~~~~~~~l~~li~  498 (535)
T 2h8h_A          420 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQV-ERGYRMPCPPECPESLHDLMC  498 (535)
T ss_dssp             TTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHH-HTTCCCCCCTTCCHHHHHHHH
T ss_pred             cccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH-HcCCCCCCCCCCCHHHHHHHH
Confidence            0112357889999999999999999999999999999999 99999987665554443 334455555678999999999


Q ss_pred             hhhcCCCCCcCCch
Q 004790          644 GLLVKEPQHRLGVK  657 (730)
Q Consensus       644 ~lL~~DP~~R~t~~  657 (730)
                      +||..||++||+++
T Consensus       499 ~cl~~dP~~RPt~~  512 (535)
T 2h8h_A          499 QCWRKEPEERPTFE  512 (535)
T ss_dssp             HHTCSSGGGSCCHH
T ss_pred             HHcCCChhHCcCHH
Confidence            99999999999953

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=6.9e-42  Score=359.59  Aligned_cols=252  Identities=20%  Similarity=0.271  Sum_probs=198.4

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhh-hhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKAS-LASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~-~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      |...+.||+|+||.||+|++  +++.||+|++.... .......+.+.+|+.+|+.++||||+++++++.++..+|+|||
T Consensus        33 ~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  110 (307)
T 2nru_A           33 SVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYV  110 (307)
T ss_dssp             TTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             cccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEE
Confidence            44458899999999999987  46689999987542 1223445678899999999999999999999999999999999


Q ss_pred             ecCCCCccccccccC-CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          412 YCPGGDLHTLRQRQP-GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       412 y~~GGsL~~ll~~~~-~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |++|++|.+++.... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.......   
T Consensus       111 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~---  187 (307)
T 2nru_A          111 YMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFA---  187 (307)
T ss_dssp             CCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCS---
T ss_pred             ecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCcEEEeeccccccccccc---
Confidence            999999998876432 3468999999999999999999999999999999999999999999999999985321000   


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                             ........+
T Consensus       188 -----------------------------------------------------------------------~~~~~~~~~  196 (307)
T 2nru_A          188 -----------------------------------------------------------------------QTVMTSRIV  196 (307)
T ss_dssp             -----------------------------------------------------------------------SCEECSSCC
T ss_pred             -----------------------------------------------------------------------ccccccccC
Confidence                                                                                   000112357


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc------------cCC-CCCCCChh
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL------------RFP-DSPATSYA  637 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~------------~~p-~~~~~s~~  637 (730)
                      ||+.|+|||++.+. ++.++|||||||++|+|++|+.||.+......+..+.....            .++ .....+..
T Consensus       197 g~~~y~aPE~~~~~-~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (307)
T 2nru_A          197 GTTAYMAPEALRGE-ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEA  275 (307)
T ss_dssp             SCGGGCCHHHHTTE-ECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHH
T ss_pred             CCcCcCChHHhcCC-CCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence            99999999998764 88999999999999999999999987655443333221100            001 11223467


Q ss_pred             HHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          638 SRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      +.+||.+||..||.+||++    .++++
T Consensus       276 l~~li~~cl~~~p~~Rps~----~~l~~  299 (307)
T 2nru_A          276 MYSVASQCLHEKKNKRPDI----KKVQQ  299 (307)
T ss_dssp             HHHHHHHHTCSSTTTSCCH----HHHHH
T ss_pred             HHHHHHHHcCCCcccCcCH----HHHHH
Confidence            8899999999999999994    56554

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=1.2e-41  Score=397.16  Aligned_cols=252  Identities=22%  Similarity=0.286  Sum_probs=202.5

Q ss_pred             ccCCeEEE-eEEccCCcEEEEEEEE--CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          329 GMSHFRLL-KRLGCGDIGSVYLSEL--SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       329 ~~~~y~il-~~LG~G~fG~Vyla~~--~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      ....+.+. +.||+|+||+||+|.+  +.+++.||||+++.... .....+.+.+|+++|+.++|||||+++++++. ..
T Consensus       366 ~~~~~~l~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~  443 (635)
T 4fl3_A          366 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN-DPALKDELLAEANVMQQLDNPYIVRMIGICEA-ES  443 (635)
T ss_dssp             CGGGEEEEEEEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGG-CGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SS
T ss_pred             cchhccccCCEeccCCCEEEEEEEEcCCCcceEEEEEEeccccC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CC
Confidence            33445554 4899999999999954  56778999999976533 22345678999999999999999999999975 45


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|||||||++|+|.+++...  ..+++..++.|+.||+.||+|||++|||||||||+||||+.++.+||+|||+++.+..
T Consensus       444 ~~lv~E~~~~g~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~  521 (635)
T 4fl3_A          444 WMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  521 (635)
T ss_dssp             EEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC
T ss_pred             EEEEEEccCCCCHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCcccccc
Confidence            88999999999999988764  5799999999999999999999999999999999999999999999999999965321


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ....                                                                         ...
T Consensus       522 ~~~~-------------------------------------------------------------------------~~~  528 (635)
T 4fl3_A          522 DENY-------------------------------------------------------------------------YKA  528 (635)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Cccc-------------------------------------------------------------------------ccc
Confidence            1000                                                                         001


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~  644 (730)
                      .....||+.|+|||++.+..++.++|||||||+||||++ |+.||.+.........+. .....+....++.++.+||.+
T Consensus       529 ~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~-~~~~~~~p~~~~~~l~~li~~  607 (635)
T 4fl3_A          529 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLE-KGERMGCPAGCPREMYDLMNL  607 (635)
T ss_dssp             ------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHH-TTCCCCCCTTCCHHHHHHHHH
T ss_pred             ccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHH
Confidence            112357899999999999999999999999999999998 999999876655444433 333444455789999999999


Q ss_pred             hhcCCCCCcCCchh
Q 004790          645 LLVKEPQHRLGVKR  658 (730)
Q Consensus       645 lL~~DP~~R~t~~~  658 (730)
                      ||..||++||++.+
T Consensus       608 cl~~dP~~RPs~~~  621 (635)
T 4fl3_A          608 CWTYDVENRPGFAA  621 (635)
T ss_dssp             HTCSSTTTSCCHHH
T ss_pred             HcCCCHhHCcCHHH
Confidence            99999999999643

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=1e-41  Score=363.00  Aligned_cols=253  Identities=22%  Similarity=0.318  Sum_probs=203.6

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEE----CCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSEL----SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~----~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      +...+|++++.||+|+||.||+|++    ..+++.||||++....   ....+.+.+|+++|+.++||||+++++++...
T Consensus        38 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  114 (326)
T 2w1i_A           38 FEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST---EEHLRDFEREIEILKSLQHDNIVKYKGVCYSA  114 (326)
T ss_dssp             CCGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC---SHHHHHHHHHHHHHHTCCCTTBCCEEEEECC-
T ss_pred             cCHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCCeeeEEEEEEec
Confidence            4567899999999999999999994    6689999999997642   24456788999999999999999999988654


Q ss_pred             --ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          404 --RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       404 --~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                        ..+|+||||+++++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.
T Consensus       115 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~  193 (326)
T 2w1i_A          115 GRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTK  193 (326)
T ss_dssp             ---CCEEEECCCTTCBHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred             CCCceEEEEECCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchh
Confidence              47899999999999999887652 468999999999999999999999999999999999999999999999999985


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      ........                                                                        
T Consensus       194 ~~~~~~~~------------------------------------------------------------------------  201 (326)
T 2w1i_A          194 VLPQDKEY------------------------------------------------------------------------  201 (326)
T ss_dssp             ECCSSCSE------------------------------------------------------------------------
T ss_pred             hccccccc------------------------------------------------------------------------
Confidence            43110000                                                                        


Q ss_pred             ccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCC----------Cc-c----ceeeeecccc
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG----------NR-A----TLFNVVGQQL  626 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~----------~~-~----~l~~i~~~~~  626 (730)
                       ........||..|+|||++.+..++.++|||||||++|||++|..||....          .. .    .+...+....
T Consensus       202 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (326)
T 2w1i_A          202 -YKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNG  280 (326)
T ss_dssp             -EECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTC
T ss_pred             -cccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCC
Confidence             000112357888999999999999999999999999999999999986431          00 0    0111222233


Q ss_pred             cCCCCCCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       627 ~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      ..+....++.++.+||++||..||++||++.
T Consensus       281 ~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~  311 (326)
T 2w1i_A          281 RLPRPDGCPDEIYMIMTECWNNNVNQRPSFR  311 (326)
T ss_dssp             CCCCCTTCCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             CCCCCCcccHHHHHHHHHHcCCChhhCcCHH
Confidence            3455567899999999999999999999953

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=366.98  Aligned_cols=261  Identities=19%  Similarity=0.231  Sum_probs=205.5

Q ss_pred             cCCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          324 RDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       324 ~~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      ....+..++|++++.||+|+||.||+|++..   .+|+|+++..... ......+.+|+.+++.++||||+++++++.+.
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  101 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDN-EDQLKAFKREVMAYRQTRHENVVLFMGACMSP  101 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCC-CCCCCCCCTTGGGGTTCCCTTBCCCCEEEECS
T ss_pred             ccccCCHHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCC-HHHHHHHHHHHHHHhcCCCCCEeEEEEEEecC
Confidence            3455778999999999999999999999865   3999998754321 12234467899999999999999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ..+|+||||++|++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++ ++.+||+|||++...
T Consensus       102 ~~~~iv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~  179 (319)
T 2y4i_B          102 PHLAIITSLCKGRTLYSVVRDA-KIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSIS  179 (319)
T ss_dssp             SCEEEECBCCCSEEHHHHTTSS-CCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSCCC--
T ss_pred             CceEEEeecccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCCcccc
Confidence            9999999999999999988764 34699999999999999999999999999999999999998 789999999998432


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ......                                                                       ...
T Consensus       180 ~~~~~~-----------------------------------------------------------------------~~~  188 (319)
T 2y4i_B          180 GVLQAG-----------------------------------------------------------------------RRE  188 (319)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             cccccc-----------------------------------------------------------------------ccc
Confidence            100000                                                                       000


Q ss_pred             ccccccccCcccCChhhhcc---------CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCC
Q 004790          564 ARSMSFVGTHEYLAPEIIKG---------EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPAT  634 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g---------~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~  634 (730)
                      .......||+.|+|||++.+         ..++.++|||||||++|||++|+.||.+.........+............+
T Consensus       189 ~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (319)
T 2y4i_B          189 DKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNLSQIGM  268 (319)
T ss_dssp             CSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCCCCCCSSC
T ss_pred             cccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCCCCCcCCC
Confidence            01123469999999999975         347889999999999999999999998876555544444333333333457


Q ss_pred             ChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          635 SYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       635 s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      +.++.+||.+||..||.+||++    .++++
T Consensus       269 ~~~l~~li~~~l~~~p~~Rpt~----~~l~~  295 (319)
T 2y4i_B          269 GKEISDILLFCWAFEQEERPTF----TKLMD  295 (319)
T ss_dssp             CTTHHHHHHHHHCSSTTTSCCH----HHHHH
T ss_pred             CHHHHHHHHHHhcCChhhCcCH----HHHHH
Confidence            8899999999999999999994    55554

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.8e-41  Score=394.17  Aligned_cols=263  Identities=21%  Similarity=0.300  Sum_probs=208.5

Q ss_pred             cccCCeEEEe-EEccCCcEEEEEEEEC--CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          328 LGMSHFRLLK-RLGCGDIGSVYLSELS--STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       328 l~~~~y~il~-~LG~G~fG~Vyla~~~--~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      +..++|.+.+ .||+|+||.||+|.++  .++..||||++++...  ....+.+.+|+++|+.++||||+++++++.+ .
T Consensus       332 ~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~  408 (613)
T 2ozo_A          332 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTE--KADTEEMMREAQIMHQLDNPYIVRLIGVCQA-E  408 (613)
T ss_dssp             CCTTSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCS--STTHHHHHHHHHHHTTCCCTTBCCEEEEEES-S
T ss_pred             ccccceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCC--hHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-C
Confidence            4556777777 8999999999999875  4566799999976432  2334668899999999999999999999976 5


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|||||||+||+|.+++... ...+++..++.|+.||+.||+|||++|||||||||+||||+.++++||+|||+++...
T Consensus       409 ~~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~  487 (613)
T 2ozo_A          409 ALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALG  487 (613)
T ss_dssp             SEEEEEECCTTCBHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC
T ss_pred             CeEEEEEeCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCccccc
Confidence            689999999999999987654 3569999999999999999999999999999999999999999999999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ....                                                                         ...
T Consensus       488 ~~~~-------------------------------------------------------------------------~~~  494 (613)
T 2ozo_A          488 ADDS-------------------------------------------------------------------------YYT  494 (613)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCc-------------------------------------------------------------------------eee
Confidence            0000                                                                         000


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ......+|+.|+|||++.+..++.++|||||||+||||++ |+.||.+.+..+.+..+.. ..+.+....++.++.+||.
T Consensus       495 ~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~-~~~~~~p~~~~~~l~~li~  573 (613)
T 2ozo_A          495 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQ-GKRMECPPECPPELYALMS  573 (613)
T ss_dssp             -------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHT-TCCCCCCTTCCHHHHHHHH
T ss_pred             eccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHc-CCCCCCCCcCCHHHHHHHH
Confidence            0012246789999999999999999999999999999998 9999998776655544433 3344444578999999999


Q ss_pred             hhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          644 GLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       644 ~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      +||..||.+||++.+.. +.|++.|+
T Consensus       574 ~cl~~dP~~RPs~~~l~-~~L~~~~~  598 (613)
T 2ozo_A          574 DCWIYKWEDRPDFLTVE-QRMRACYY  598 (613)
T ss_dssp             HTTCSSTTTSCCHHHHH-HHHHHHHH
T ss_pred             HHcCCChhHCcCHHHHH-HHHHHHHH
Confidence            99999999999964332 23444443

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=1.5e-40  Score=350.09  Aligned_cols=222  Identities=18%  Similarity=0.152  Sum_probs=187.8

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|++++.||+|+||.||+|++..+++.||||++.............+.+|+.+++.++||||+++++++.+++.+|
T Consensus        28 ~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~  107 (286)
T 3uqc_A           28 IANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGL  107 (286)
T ss_dssp             ETTTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred             EecCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEE
Confidence            55578999999999999999999999999999999998776555566778899999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||++|++|.++++..    .....+..++.||+.||+|||++||+||||||+||||+.+|.+||+++|.        
T Consensus       108 lv~e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~~--------  175 (286)
T 3uqc_A          108 VVAEWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPAT--------  175 (286)
T ss_dssp             EEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCCC--------
T ss_pred             EEEEecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEeccc--------
Confidence            999999999999988543    34556788999999999999999999999999999999999999986542        


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (286)
T 3uqc_A          176 --------------------------------------------------------------------------------  175 (286)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcccee---eeecccccCC--CCCCCChhHHHHH
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF---NVVGQQLRFP--DSPATSYASRDLI  642 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~---~i~~~~~~~p--~~~~~s~~~~dLI  642 (730)
                              ++       .++.++|||||||++|||++|+.||.+.+....+.   +.+......+  ....++.++++||
T Consensus       176 --------~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  240 (286)
T 3uqc_A          176 --------MP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVA  240 (286)
T ss_dssp             --------CT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHH
T ss_pred             --------cC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHH
Confidence                    12       26789999999999999999999999876655442   2222222211  1246789999999


Q ss_pred             HhhhcCCCCCcCCch
Q 004790          643 RGLLVKEPQHRLGVK  657 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~  657 (730)
                      .+||.+||++| ++.
T Consensus       241 ~~~l~~dP~~R-s~~  254 (286)
T 3uqc_A          241 ARSVQGDGGIR-SAS  254 (286)
T ss_dssp             HHHHCTTSSCC-CHH
T ss_pred             HHHcccCCccC-CHH
Confidence            99999999999 843

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=2.8e-41  Score=359.85  Aligned_cols=250  Identities=23%  Similarity=0.295  Sum_probs=195.5

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHh--cCCCCCccccccccccc---
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL--LDHPFLPTLYTHFETDR---  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~--L~HPnIV~L~~~f~~~~---  404 (730)
                      .++|++++.||+|+||.||+|++  +++.||||++....      ...+.+|+++++.  ++||||+++++++....   
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~------~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~  112 (342)
T 1b6c_B           41 ARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSRE------ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW  112 (342)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECGGG------HHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSC
T ss_pred             cccEEEEeeecCCCCcEEEEEEE--cCccEEEEEeCchh------HHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcc
Confidence            46799999999999999999998  47899999997543      2346778999987  79999999999998765   


Q ss_pred             -eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhH--------hcceeecccCCccEEecCCCceEEe
Q 004790          405 -FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH--------MLGVVYRDLKPENVLVRDDGHIMLS  475 (730)
Q Consensus       405 -~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH--------~~gIVHRDLKPeNILl~~~g~vKL~  475 (730)
                       .+|+||||+++|+|.+++.+.   .+++..++.++.||+.||.|||        ++||+||||||+||||+.++++||+
T Consensus       113 ~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~  189 (342)
T 1b6c_B          113 TQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIA  189 (342)
T ss_dssp             CCEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEEC
T ss_pred             ceeEEEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEE
Confidence             899999999999999998764   6899999999999999999999        8999999999999999999999999


Q ss_pred             cccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCc
Q 004790          476 DFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLP  555 (730)
Q Consensus       476 DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (730)
                      |||++.........                                                                  
T Consensus       190 Dfg~~~~~~~~~~~------------------------------------------------------------------  203 (342)
T 1b6c_B          190 DLGLAVRHDSATDT------------------------------------------------------------------  203 (342)
T ss_dssp             CCTTCEEEETTTTE------------------------------------------------------------------
T ss_pred             ECCCceeccccccc------------------------------------------------------------------
Confidence            99998543211000                                                                  


Q ss_pred             ccccccccccccccccCcccCChhhhccCC------CCCcceeechhHHHHHHhhC----------CCCCCCCCCcc---
Q 004790          556 ELVAEPTAARSMSFVGTHEYLAPEIIKGEG------HGSAVDWWTFGIFLHELLYG----------KTPFKGSGNRA---  616 (730)
Q Consensus       556 ~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~------~~~~sDIWSLG~iLyELltG----------~~PF~g~~~~~---  616 (730)
                            ........+||+.|+|||++.+..      ++.++|||||||++|||++|          ..||.......   
T Consensus       204 ------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~  277 (342)
T 1b6c_B          204 ------IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV  277 (342)
T ss_dssp             ------EEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred             ------cccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccH
Confidence                  000112347999999999998763      33689999999999999999          78887653321   


Q ss_pred             -ceee-eeccccc--CCC---CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          617 -TLFN-VVGQQLR--FPD---SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       617 -~l~~-i~~~~~~--~p~---~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                       .+.. +......  ++.   ....+..+.+||.+||..||.+||+    +.++++|
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps----~~~i~~~  330 (342)
T 1b6c_B          278 EEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLT----ALRIKKT  330 (342)
T ss_dssp             HHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCC----HHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCC----HHHHHHH
Confidence             1111 1112111  111   1122357889999999999999999    4566543

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=3.9e-42  Score=401.52  Aligned_cols=262  Identities=24%  Similarity=0.365  Sum_probs=208.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc------c
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET------D  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~------~  403 (730)
                      .++|++++.||+|+||.||+|.+..+++.||||++....  .......+.+|+++|+.++||||+++++++..      +
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~--~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~   90 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL--SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPN   90 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC--CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTT
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC--CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCC
Confidence            478999999999999999999999999999999987642  33455678899999999999999999998765      7


Q ss_pred             ceeeEEeeecCCCCccccccccC-CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCc---eEEecccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQP-GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGH---IMLSDFDL  479 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~-~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~---vKL~DFGl  479 (730)
                      +..|+|||||+||+|..++.... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.   +||+|||+
T Consensus        91 ~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~  170 (676)
T 3qa8_A           91 DLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGY  170 (676)
T ss_dssp             SSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCC
T ss_pred             CeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEccccc
Confidence            78899999999999999887642 236899999999999999999999999999999999999997765   99999999


Q ss_pred             cccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccc
Q 004790          480 SLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVA  559 (730)
Q Consensus       480 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (730)
                      +......                                                                         
T Consensus       171 a~~~~~~-------------------------------------------------------------------------  177 (676)
T 3qa8_A          171 AKELDQG-------------------------------------------------------------------------  177 (676)
T ss_dssp             CCBTTSC-------------------------------------------------------------------------
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            8432100                                                                         


Q ss_pred             ccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcc--------------ceeeeeccc
Q 004790          560 EPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA--------------TLFNVVGQQ  625 (730)
Q Consensus       560 e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~--------------~l~~i~~~~  625 (730)
                          ......+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.....              .......+.
T Consensus       178 ----~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~  253 (676)
T 3qa8_A          178 ----ELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGA  253 (676)
T ss_dssp             ----CCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSS
T ss_pred             ----cccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccc
Confidence                00123579999999999999999999999999999999999999997642111              111122222


Q ss_pred             ccCCC--------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          626 LRFPD--------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       626 ~~~p~--------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                      ..++.        ...++..+.+||.+||.+||.+||+    +.++++||||+.++.
T Consensus       254 ~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPT----a~elL~hp~F~~l~~  306 (676)
T 3qa8_A          254 VKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGT----DPQNPNVGCFQALDS  306 (676)
T ss_dssp             CCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---C----CTTCCCCTTHHHHHH
T ss_pred             cccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcC----HHHHhcCHHHHHHHH
Confidence            22211        1235678999999999999999999    589999999998543

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=2.5e-40  Score=387.49  Aligned_cols=251  Identities=25%  Similarity=0.334  Sum_probs=205.8

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCC---CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSST---RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t---~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      .+..++|++++.||+|+||+||+|++..+   +..||||++....  .....+.+.+|+.+|+.++||||+++++++. +
T Consensus       386 ~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~  462 (656)
T 2j0j_A          386 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT--SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-E  462 (656)
T ss_dssp             BCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-S
T ss_pred             ccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-c
Confidence            45568899999999999999999998654   4679999986542  3344567889999999999999999999985 4


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      +.+|+||||+++|+|.++++.. ...+++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+++..
T Consensus       463 ~~~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~~  541 (656)
T 2j0j_A          463 NPVWIIMELCTLGELRSFLQVR-KFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM  541 (656)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHT-TTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCSC
T ss_pred             CceEEEEEcCCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCeec
Confidence            5689999999999999988754 346899999999999999999999999999999999999999999999999998532


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ...                                                                           ..
T Consensus       542 ~~~---------------------------------------------------------------------------~~  546 (656)
T 2j0j_A          542 EDS---------------------------------------------------------------------------TY  546 (656)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             CCC---------------------------------------------------------------------------cc
Confidence            100                                                                           00


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      .......||+.|+|||++.+..++.++|||||||++|||++ |..||.+....+.+..+... ...+....++..+.+||
T Consensus       547 ~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~li  625 (656)
T 2j0j_A          547 YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENG-ERLPMPPNCPPTLYSLM  625 (656)
T ss_dssp             -------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHT-CCCCCCTTCCHHHHHHH
T ss_pred             eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcC-CCCCCCccccHHHHHHH
Confidence            00112357889999999999999999999999999999997 99999987665555444333 23344457889999999


Q ss_pred             HhhhcCCCCCcCCch
Q 004790          643 RGLLVKEPQHRLGVK  657 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~  657 (730)
                      .+||..||.+||++.
T Consensus       626 ~~~l~~dP~~RPs~~  640 (656)
T 2j0j_A          626 TKCWAYDPSRRPRFT  640 (656)
T ss_dssp             HHHTCSSGGGSCCHH
T ss_pred             HHHcCCChhHCcCHH
Confidence            999999999999953

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.3e-40  Score=387.39  Aligned_cols=245  Identities=24%  Similarity=0.324  Sum_probs=198.3

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECC-CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSS-TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~-t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      .+..++|++++.||+|+||+||+|++.. +++.||||++....  .......+.+|+++|+.++||||++++++|...+.
T Consensus        76 ~~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  153 (681)
T 2pzi_A           76 DIVAGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG--DAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDR  153 (681)
T ss_dssp             CEETTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECT
T ss_pred             CEeCCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC--CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCC
Confidence            3455889999999999999999999976 78999999986532  23445678899999999999999999999987665


Q ss_pred             -----eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          406 -----SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       406 -----l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                           .||||||++|++|..++..    .+++..++.|+.||+.||.|||++|||||||||+||||+.+ ++||+|||++
T Consensus       154 ~~~~~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a  228 (681)
T 2pzi_A          154 HGDPVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAV  228 (681)
T ss_dssp             TSCEEEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECCCTTC
T ss_pred             CCCceeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEecccc
Confidence                 7999999999999887654    58999999999999999999999999999999999999875 9999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +....                                                                           
T Consensus       229 ~~~~~---------------------------------------------------------------------------  233 (681)
T 2pzi_A          229 SRINS---------------------------------------------------------------------------  233 (681)
T ss_dssp             EETTC---------------------------------------------------------------------------
T ss_pred             hhccc---------------------------------------------------------------------------
Confidence            53210                                                                           


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHH
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRD  640 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~d  640 (730)
                           ....+||+.|+|||++.+. ++.++|||||||+||+|++|..||.+.....    +.    ........+..+.+
T Consensus       234 -----~~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~----~~----~~~~~~~~~~~l~~  299 (681)
T 2pzi_A          234 -----FGYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDG----LP----EDDPVLKTYDSYGR  299 (681)
T ss_dssp             -----CSCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSS----CC----TTCHHHHHCHHHHH
T ss_pred             -----CCccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccccccc----cc----ccccccccCHHHHH
Confidence                 0134799999999999875 4889999999999999999999987632110    00    00000123578899


Q ss_pred             HHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          641 LIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||.+||.+||.+||+.    .+.+.|+|+.-
T Consensus       300 li~~~l~~dP~~R~~~----~~~l~~~l~~~  326 (681)
T 2pzi_A          300 LLRRAIDPDPRQRFTT----AEEMSAQLTGV  326 (681)
T ss_dssp             HHHHHTCSSGGGSCSS----HHHHHHHHHHH
T ss_pred             HHhhhccCChhhCCCH----HHHHHHHHHHH
Confidence            9999999999999984    67777887753

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.98  E-value=5.8e-34  Score=328.51  Aligned_cols=192  Identities=17%  Similarity=0.108  Sum_probs=137.7

Q ss_pred             EeEEccCCcEEEEEEEECCCCeEEEEEEeehhhh-------hhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceee
Q 004790          336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL-------ASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~-------~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~  407 (730)
                      ...++.|++|.+..++..-.|..||+|++.+...       ......+.+.+|+++|+++ .|+||++|+++|++++.+|
T Consensus       239 ~~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~y  318 (569)
T 4azs_A          239 QNQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGW  318 (569)
T ss_dssp             ECC-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEE
T ss_pred             hhccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEE
Confidence            3467889999988888878888999999976421       2334556799999999999 7999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      ||||||+|++|.+++.+.  +.+++.   .|+.||+.||+|||++|||||||||+||||+.+|++||+|||+|+....  
T Consensus       319 LVMEyv~G~~L~d~i~~~--~~l~~~---~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~--  391 (569)
T 4azs_A          319 LVMEKLPGRLLSDMLAAG--EEIDRE---KILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQ--  391 (569)
T ss_dssp             EEEECCCSEEHHHHHHTT--CCCCHH---HHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---
T ss_pred             EEEecCCCCcHHHHHHhC--CCCCHH---HHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCC--
Confidence            999999999999998765  566654   4789999999999999999999999999999999999999999953210  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                ......
T Consensus       392 --------------------------------------------------------------------------~~~~~~  397 (569)
T 4azs_A          392 --------------------------------------------------------------------------DCSWPT  397 (569)
T ss_dssp             ----------------------------------------------------------------------------CCSH
T ss_pred             --------------------------------------------------------------------------CCcccc
Confidence                                                                                      001223


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCC
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPF  609 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF  609 (730)
                      +.+||+.|||||++.+. +..++|+|++|+++|+|+++..+|
T Consensus       398 t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~~  438 (569)
T 4azs_A          398 NLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSNW  438 (569)
T ss_dssp             HHHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred             CceechhhccHHHhCCC-CCCcccccccccchhhhccccchh
Confidence            57999999999999875 667899999999999887765554

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.94  E-value=1.2e-28  Score=282.44  Aligned_cols=193  Identities=18%  Similarity=0.145  Sum_probs=144.8

Q ss_pred             EEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhh-----hhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          334 RLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL-----ASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       334 ~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~-----~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      ...+.||+|+||+||+++.  .+..+|+|++.....     ......+++.+|+++|+.++||||+++..++......||
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~--~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~l  416 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY--LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRI  416 (540)
T ss_dssp             ---------CCEEEEEEEC--SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEE
T ss_pred             CCCCEEeeCCCEEEEEEEE--CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEE
Confidence            3457899999999999954  456789987643222     223345678999999999999999966666667777899


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      |||||+|++|.+++..          ++.|+.||+.||+|||++||+||||||+|||++.  ++||+|||+++.......
T Consensus       417 VmE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~  484 (540)
T 3en9_A          417 MMSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDED  484 (540)
T ss_dssp             EEECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHHH
T ss_pred             EEECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECCCccc
Confidence            9999999999998764          5679999999999999999999999999999998  999999999964311000


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                      .                                                                     .........+
T Consensus       485 ~---------------------------------------------------------------------~~~~~~~~~~  495 (540)
T 3en9_A          485 K---------------------------------------------------------------------AVDLIVFKKA  495 (540)
T ss_dssp             H---------------------------------------------------------------------HHHHHHHHHH
T ss_pred             c---------------------------------------------------------------------ccchhhhhhh
Confidence            0                                                                     0000001236


Q ss_pred             cccCcccCChhhhcc--CCCCCcceeechhHHHHHHhhCCCCC
Q 004790          569 FVGTHEYLAPEIIKG--EGHGSAVDWWTFGIFLHELLYGKTPF  609 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g--~~~~~~sDIWSLG~iLyELltG~~PF  609 (730)
                      ++||+.|||||++.+  ..|+..+|+|+..+-..+.+.++.+|
T Consensus       496 ~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          496 VLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             HHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             hcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence            799999999999987  67888899999999998888777666

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.93  E-value=4.2e-26  Score=240.36  Aligned_cols=135  Identities=19%  Similarity=0.119  Sum_probs=111.1

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH---------------HHHHHHHHHHHHHHhcCCCCCcc
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR---------------KKLTRAQTEREILQLLDHPFLPT  395 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~---------------~~~~~~~~E~~IL~~L~HPnIV~  395 (730)
                      ..|.+++.||+|+||.||+|++ .+++.||||+++.......               .....+.+|+++|+.++  | ++
T Consensus        90 ~~~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~  165 (282)
T 1zar_A           90 KVDAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LA  165 (282)
T ss_dssp             SCSEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SS
T ss_pred             eEEEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CC
Confidence            4577779999999999999999 8899999999965322111               23456889999999999  5 67


Q ss_pred             ccccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEe
Q 004790          396 LYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLS  475 (730)
Q Consensus       396 L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~  475 (730)
                      +++++.. +..|+|||||+|++|.. +..        .....++.||+.||.|||++||+||||||+|||++ +|++||+
T Consensus       166 v~~~~~~-~~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~vkl~  234 (282)
T 1zar_A          166 VPKVYAW-EGNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWII  234 (282)
T ss_dssp             SCCEEEE-ETTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEEC
T ss_pred             cCeEEec-cceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcEEEE
Confidence            7776544 56799999999999988 321        13456999999999999999999999999999999 9999999


Q ss_pred             ccccc
Q 004790          476 DFDLS  480 (730)
Q Consensus       476 DFGlA  480 (730)
                      |||+|
T Consensus       235 DFG~a  239 (282)
T 1zar_A          235 DFPQS  239 (282)
T ss_dssp             CCTTC
T ss_pred             ECCCC
Confidence            99987

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.85  E-value=1.4e-21  Score=202.69  Aligned_cols=140  Identities=17%  Similarity=0.166  Sum_probs=108.3

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeE--EEEEEeehhhhh---------------------hHHHHHHHHHHHHHHHhc
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCY--FAMKVMDKASLA---------------------SRKKLTRAQTEREILQLL  388 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~--vAvKvi~k~~~~---------------------~~~~~~~~~~E~~IL~~L  388 (730)
                      -|++.+.||+|+||.||+|.+..+|+.  ||||+++.....                     .......+.+|+.+|+.+
T Consensus        48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  127 (258)
T 1zth_A           48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA  127 (258)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence            378999999999999999999778888  999997543211                     011224678999999999


Q ss_pred             CCCCC--ccccccccccceeeEEeeecCC-C----CccccccccCCCCccHHHHHHhHHHHHHHHHHhH-hcceeecccC
Q 004790          389 DHPFL--PTLYTHFETDRFSCLVMEYCPG-G----DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH-MLGVVYRDLK  460 (730)
Q Consensus       389 ~HPnI--V~L~~~f~~~~~l~LVmEy~~G-G----sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH-~~gIVHRDLK  460 (730)
                      .|++|  +.++..    ...||||||+.+ |    +|..+..     .+++..+..++.||+.||.||| ++||||||||
T Consensus       128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~~givHrDlk  198 (258)
T 1zth_A          128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGR-----ELKELDVEGIFNDVVENVKRLYQEAELVHADLS  198 (258)
T ss_dssp             HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGG-----GGGGSCHHHHHHHHHHHHHHHHHTSCEECSSCS
T ss_pred             HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhh-----ccChHHHHHHHHHHHHHHHHHHHHCCEEeCCCC
Confidence            88864  444432    457899999942 4    4433321     1345677889999999999999 9999999999


Q ss_pred             CccEEecCCCceEEeccccccc
Q 004790          461 PENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       461 PeNILl~~~g~vKL~DFGlA~~  482 (730)
                      |+|||++.  +++|+|||+|..
T Consensus       199 p~NILl~~--~~~liDFG~a~~  218 (258)
T 1zth_A          199 EYNIMYID--KVYFIDMGQAVT  218 (258)
T ss_dssp             TTSEEESS--SEEECCCTTCEE
T ss_pred             HHHEEEcC--cEEEEECccccc
Confidence            99999988  999999999954

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.74  E-value=9.7e-19  Score=192.29  Aligned_cols=137  Identities=14%  Similarity=0.176  Sum_probs=98.1

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh---------------hHH--HH--HHHHHHHHHHHhcCCCCC
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA---------------SRK--KL--TRAQTEREILQLLDHPFL  393 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~---------------~~~--~~--~~~~~E~~IL~~L~HPnI  393 (730)
                      |++++.||.|+||.||+|.+. +|+.||||+++.....               ...  .+  ..+.+|...|.+|.+.++
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~-~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv  175 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADE-KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF  175 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECT-TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEecCEeeeCCceEEEEEECC-CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999985 5889999998632110               000  01  122445566666644333


Q ss_pred             ccccccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC---
Q 004790          394 PTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG---  470 (730)
Q Consensus       394 V~L~~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g---  470 (730)
                      .. ...+.. ...||||||++|+.|..+...        ..+..++.||+.+|.|||++|||||||||.||||+.+|   
T Consensus       176 ~v-p~p~~~-~~~~LVME~i~G~~L~~l~~~--------~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~  245 (397)
T 4gyi_A          176 PV-PEPIAQ-SRHTIVMSLVDALPMRQVSSV--------PDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAE  245 (397)
T ss_dssp             SC-CCEEEE-ETTEEEEECCSCEEGGGCCCC--------SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSS
T ss_pred             CC-Ceeeec-cCceEEEEecCCccHhhhccc--------HHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCcc
Confidence            21 111111 224799999999988765432        23456789999999999999999999999999998877   


Q ss_pred             -------ceEEeccccc
Q 004790          471 -------HIMLSDFDLS  480 (730)
Q Consensus       471 -------~vKL~DFGlA  480 (730)
                             .+.|+||+-+
T Consensus       246 d~~~~~~~~~iID~~Q~  262 (397)
T 4gyi_A          246 DPSSITLTPIIIXFPQM  262 (397)
T ss_dssp             CTTSEEEEEEECCCTTC
T ss_pred             cccccccceEEEEeCCc
Confidence                   3899999866

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.37  E-value=9.3e-13  Score=135.08  Aligned_cols=139  Identities=17%  Similarity=0.135  Sum_probs=111.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccceeeEE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      ..|++...+|.|+.+.||++...  +..+++|+........   ...+.+|.++|+.| .|..++++++++.+.+..|+|
T Consensus        14 ~~~~~~~~~~g~s~~~v~~~~~~--~~~~vlK~~~~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv   88 (263)
T 3tm0_A           14 EKYRCVKDTEGMSPAKVYKLVGE--NENLYLKMTDSRYKGT---TYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL   88 (263)
T ss_dssp             TTSEEEECCSCCSSSEEEEEECS--SCEEEEEEECGGGTTS---TTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred             ccceeEeeccCCCCCeEEEEECC--CCcEEEEeCCcccCCC---HHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEE
Confidence            56999999999999999999754  4679999987532111   12477899999988 467888999999988899999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh--------------------------------------
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM--------------------------------------  451 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~--------------------------------------  451 (730)
                      |||++|.+|...+.       +......++.++..+|..||+                                      
T Consensus        89 ~e~i~G~~l~~~~~-------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (263)
T 3tm0_A           89 MSEADGVLCSEEYE-------DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEED  161 (263)
T ss_dssp             EECCSSEEHHHHCC-------TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTT
T ss_pred             EEecCCeehhhccC-------CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccc
Confidence            99999999876421       112234678899999999998                                      


Q ss_pred             ---------------------cceeecccCCccEEecCCCceEEecccccc
Q 004790          452 ---------------------LGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       452 ---------------------~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                                           .+++|+|++|.|||++.++.+.|+||+.+.
T Consensus       162 ~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          162 TPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             CSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             ccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                                 569999999999999876666799999874

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.26  E-value=1.5e-11  Score=124.53  Aligned_cols=134  Identities=16%  Similarity=0.084  Sum_probs=98.9

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCC--CccccccccccceeeE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF--LPTLYTHFETDRFSCL  408 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPn--IV~L~~~f~~~~~l~L  408 (730)
                      ..|.+....+.|..+.||++.. .++..+++|+.....      ...+.+|+.+|+.+.+.+  +++++.++..++..|+
T Consensus        20 ~~~~~~~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~~------~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~   92 (264)
T 1nd4_A           20 FGYDWAQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSGA------LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWL   92 (264)
T ss_dssp             TTCEEEECSCTTSSCEEEEEEC-TTSCCEEEEEECSCT------TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEE
T ss_pred             CCCceEecccCCCCceEEEEec-CCCCeEEEEeCCccc------chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEE
Confidence            4566644444666799999965 456679999976531      134678999999885433  6778888888888999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc-----------------------------------
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG-----------------------------------  453 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g-----------------------------------  453 (730)
                      ||||++|.+|.  ...     ..   ...++.+++..|..||+..                                   
T Consensus        93 v~e~i~G~~l~--~~~-----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (264)
T 1nd4_A           93 LLGEVPGQDLL--SSH-----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEH  162 (264)
T ss_dssp             EEECCSSEETT--TSC-----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGG
T ss_pred             EEEecCCcccC--cCc-----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhc
Confidence            99999998884  211     11   1245667777777777643                                   


Q ss_pred             -----------------------eeecccCCccEEecCCCceEEecccccc
Q 004790          454 -----------------------VVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       454 -----------------------IVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                                             ++|+|++|.|||++.++.+.|+|||.+.
T Consensus       163 ~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          163 QGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             TTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence                                   9999999999999877667799999874

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.20  E-value=5.1e-11  Score=128.25  Aligned_cols=142  Identities=15%  Similarity=0.199  Sum_probs=107.1

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEee--hhhhhhHHHHHHHHHHHHHHHhcC--CCCCcccccccccc---ce
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMD--KASLASRKKLTRAQTEREILQLLD--HPFLPTLYTHFETD---RF  405 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~--k~~~~~~~~~~~~~~E~~IL~~L~--HPnIV~L~~~f~~~---~~  405 (730)
                      ...++.|+.|.++.||++...+  ..+++|+..  .....  .....+.+|..+|+.|.  +..+++++.++.+.   +.
T Consensus        40 ~~~~~~l~~G~sn~~y~v~~~~--~~~vlr~~~~p~~~~~--~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~  115 (359)
T 3dxp_A           40 PLSVEQFKGGQSNPTFKLVTPG--QTYVMRAKPGPKSKLL--PSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGR  115 (359)
T ss_dssp             CCEEEECCC-CCSCEEEEECSS--CEEEEECCCC------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSS
T ss_pred             CceEEEcCCcccceEEEEEECC--ceEEEEeCCCCCCCCC--CcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCC
Confidence            3457889999999999998753  468889875  32211  12345778999999996  45688899888766   45


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh----------------------------------
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM----------------------------------  451 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~----------------------------------  451 (730)
                      .|+||||++|..|.+...    ..+++.....++.+++..|..||.                                  
T Consensus       116 ~~~vme~v~G~~l~~~~~----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (359)
T 3dxp_A          116 AFYIMEFVSGRVLWDQSL----PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSET  191 (359)
T ss_dssp             CEEEEECCCCBCCCCTTC----TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCC
T ss_pred             eEEEEEecCCeecCCCcc----ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCC
Confidence            899999999988854211    246778888899999999999997                                  


Q ss_pred             ------------------------cceeecccCCccEEecCCCc--eEEeccccccc
Q 004790          452 ------------------------LGVVYRDLKPENVLVRDDGH--IMLSDFDLSLR  482 (730)
Q Consensus       452 ------------------------~gIVHRDLKPeNILl~~~g~--vKL~DFGlA~~  482 (730)
                                              .++||+|+++.|||++.++.  +.|+||+.+..
T Consensus       192 ~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          192 ESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             SCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             cCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                                    46999999999999997753  69999999854

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=99.05  E-value=7.1e-11  Score=124.35  Aligned_cols=133  Identities=17%  Similarity=0.143  Sum_probs=97.8

Q ss_pred             EeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCC--Cccccccccccc---eeeEE
Q 004790          336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPF--LPTLYTHFETDR---FSCLV  409 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPn--IV~L~~~f~~~~---~l~LV  409 (730)
                      ++.|+.|.+..||++.     ..+++|+....     .....+.+|.++|+.+ .+..  +++++.......   ..|+|
T Consensus        25 i~~~~~G~~n~v~~v~-----~~~vlR~~~~~-----~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~v   94 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN-----RDFIFKFPKHS-----RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAG   94 (304)
T ss_dssp             CCEEEECSSEEEEEST-----TSEEEEEESSH-----HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEE
T ss_pred             eEecCCCCcceEEEEC-----CEEEEEecCCc-----chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEE
Confidence            3568999999999874     34889986543     2345678899999887 4333  445555544333   45899


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh--------------------------------------
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM--------------------------------------  451 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~--------------------------------------  451 (730)
                      ||+++|..|.....    ..++..+...++.|++..|..||+                                      
T Consensus        95 m~~i~G~~l~~~~~----~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
T 3sg8_A           95 FTKIKGVPLTPLLL----NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQM  170 (304)
T ss_dssp             EECCCCEECCHHHH----HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             EcccCCeECCcccc----ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccH
Confidence            99999998865322    236677777788888888888885                                      


Q ss_pred             --------------------cceeecccCCccEEecC--CCceEEeccccccc
Q 004790          452 --------------------LGVVYRDLKPENVLVRD--DGHIMLSDFDLSLR  482 (730)
Q Consensus       452 --------------------~gIVHRDLKPeNILl~~--~g~vKL~DFGlA~~  482 (730)
                                          ..++|+|++|.|||++.  ++.+.|+||+.+..
T Consensus       171 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~  223 (304)
T 3sg8_A          171 KKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAI  223 (304)
T ss_dssp             HHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEE
T ss_pred             HHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCcc
Confidence                                24799999999999998  56689999998854

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.65  E-value=1.5e-07  Score=99.41  Aligned_cols=133  Identities=16%  Similarity=0.104  Sum_probs=91.1

Q ss_pred             EeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCC---CCcccccccc-ccceeeEEee
Q 004790          336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP---FLPTLYTHFE-TDRFSCLVME  411 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HP---nIV~L~~~f~-~~~~l~LVmE  411 (730)
                      ++.++.|....||+.     +..+++|+....     .....+.+|.++|+.|.+.   .+++.+.+.. ..+..|+|||
T Consensus        24 v~~l~~G~~n~v~~v-----g~~~VlR~~~~~-----~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e   93 (306)
T 3tdw_A           24 VESLGEGFRNYAILV-----NGDWVFRFPKSQ-----QGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYR   93 (306)
T ss_dssp             EEEEEECSSEEEEEE-----TTTEEEEEESSH-----HHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEE
T ss_pred             eeecCCCcceeEEEE-----CCEEEEEecCCc-----hHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEe
Confidence            456889999999998     345889986432     2345688999999999653   3566666653 4566789999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh----------------------------------------
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM----------------------------------------  451 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~----------------------------------------  451 (730)
                      |++|..|....-    ..++......++.++...|..||+                                        
T Consensus        94 ~i~G~~l~~~~~----~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~  169 (306)
T 3tdw_A           94 KVQGQILGEDGM----AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLR  169 (306)
T ss_dssp             CCCSEECHHHHH----TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred             ccCCeECchhhh----hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhH
Confidence            999988865211    113333444444444444444443                                        


Q ss_pred             --------------------cceeecccCCccEEecC---CCce-EEeccccccc
Q 004790          452 --------------------LGVVYRDLKPENVLVRD---DGHI-MLSDFDLSLR  482 (730)
Q Consensus       452 --------------------~gIVHRDLKPeNILl~~---~g~v-KL~DFGlA~~  482 (730)
                                          ..++|+|++|.|||++.   ++.+ .|+||+.+..
T Consensus       170 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          170 DYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             HHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             HHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence                                24699999999999987   4554 8999998743

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.52  E-value=6.1e-07  Score=91.89  Aligned_cols=133  Identities=17%  Similarity=0.105  Sum_probs=93.3

Q ss_pred             EEccCCcE-EEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeEEeeecCC
Q 004790          338 RLGCGDIG-SVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCLVMEYCPG  415 (730)
Q Consensus       338 ~LG~G~fG-~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~LVmEy~~G  415 (730)
                      .+..|..| .||+......+..+.+|+-...      ....+.+|..+|+.|. +--+++++.++++++..|+|||+++|
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~------~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G  104 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS------VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPG  104 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEETH------HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCS
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCCC------CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCC
Confidence            34455554 7999988777778999987543      2345778999999883 33477888888888999999999999


Q ss_pred             CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh--------------------------------------------
Q 004790          416 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM--------------------------------------------  451 (730)
Q Consensus       416 GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~--------------------------------------------  451 (730)
                      .++.......      ......+..++...|..||.                                            
T Consensus       105 ~~~~~~~~~~------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (272)
T 4gkh_A          105 KTAFQVLEEY------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQ  178 (272)
T ss_dssp             EEHHHHHHHC------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHH
T ss_pred             ccccccccCC------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHH
Confidence            8775543221      11112233444444444442                                            


Q ss_pred             --------------cceeecccCCccEEecCCCceEEeccccccc
Q 004790          452 --------------LGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       452 --------------~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                                    ..++|+|+.+.|||++.++.+-|+||+.+..
T Consensus       179 ~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          179 VWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             HHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence                          1279999999999999877778999998843

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.26  E-value=1.8e-06  Score=94.10  Aligned_cols=80  Identities=16%  Similarity=0.190  Sum_probs=51.0

Q ss_pred             EEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhh-hhH---HHHHHHHHHHHHHHhcCC--C-CCccccccccccceee
Q 004790          335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASL-ASR---KKLTRAQTEREILQLLDH--P-FLPTLYTHFETDRFSC  407 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~-~~~---~~~~~~~~E~~IL~~L~H--P-nIV~L~~~f~~~~~l~  407 (730)
                      .++.||.|.++.||++....+++.|++|....... ...   ....++..|.++|+.+..  | .+++++.+  +....+
T Consensus        34 ~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~  111 (397)
T 2olc_A           34 TCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAV  111 (397)
T ss_dssp             EEEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTE
T ss_pred             EEEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccE
Confidence            46789999999999998766667899998653211 000   112356779999988732  3 45566644  334568


Q ss_pred             EEeeecCCC
Q 004790          408 LVMEYCPGG  416 (730)
Q Consensus       408 LVmEy~~GG  416 (730)
                      +||||++|.
T Consensus       112 lvmE~l~g~  120 (397)
T 2olc_A          112 TVMEDLSHL  120 (397)
T ss_dssp             EEECCCTTS
T ss_pred             EEEEeCCCc
Confidence            999999774

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=98.21  E-value=6.2e-06  Score=86.69  Aligned_cols=138  Identities=14%  Similarity=0.161  Sum_probs=79.8

Q ss_pred             EEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC--CCCCcccccc------cccccee
Q 004790          335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD--HPFLPTLYTH------FETDRFS  406 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~--HPnIV~L~~~------f~~~~~l  406 (730)
                      -++.|+.|..+.||++.... + .+++|+.....    .   .+..|..+++.|.  .-.+++++..      ...++..
T Consensus        36 ~~~~l~gG~~n~~~~v~~~~-~-~~vlk~~~~~~----~---~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~  106 (346)
T 2q83_A           36 KIDVIQGNQMALVWKVHTDS-G-AVCLKRIHRPE----K---KALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFL  106 (346)
T ss_dssp             EEEECC----CEEEEEEETT-E-EEEEEEECSCH----H---HHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEE
T ss_pred             EeeeccccccCcEEEEEeCC-C-CEEEEecCCCH----H---HHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEE
Confidence            45667777899999998743 3 48999987521    1   2334555555542  1134444432      1345678


Q ss_pred             eEEeeecCCCCccc--------------cccc----c--CC--------CCccHH------H------------------
Q 004790          407 CLVMEYCPGGDLHT--------------LRQR----Q--PG--------KHFSEY------A------------------  434 (730)
Q Consensus       407 ~LVmEy~~GGsL~~--------------ll~~----~--~~--------~~lse~------~------------------  434 (730)
                      |+||||++|..+..              .++.    .  +.        ..+...      .                  
T Consensus       107 ~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  186 (346)
T 2q83_A          107 FVVYDWIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQ  186 (346)
T ss_dssp             EEEEECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred             EEEEEeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            99999999876530              0110    0  00        001000      0                  


Q ss_pred             -----HHHhHHHHHHHHHHhHh-------------cceeecccCCccEEecCCCceEEecccccc
Q 004790          435 -----ARFYAAEVLLALEYLHM-------------LGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       435 -----a~~~~~qIl~AL~yLH~-------------~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                           ...+..++..++.+|+.             .+++|+|+++.|||++.++.+.|+||+.+.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          187 LYLQEIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence                 11122234445666652             579999999999999888899999999874

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.16  E-value=1.2e-05  Score=85.74  Aligned_cols=85  Identities=13%  Similarity=0.112  Sum_probs=58.8

Q ss_pred             eEEEeEE-ccCCcEEEEEEEEC---C---CCeEEEEEEeehhh---hhhHHHHHHHHHHHHHHHhcC-C--CCCcccccc
Q 004790          333 FRLLKRL-GCGDIGSVYLSELS---S---TRCYFAMKVMDKAS---LASRKKLTRAQTEREILQLLD-H--PFLPTLYTH  399 (730)
Q Consensus       333 y~il~~L-G~G~fG~Vyla~~~---~---t~~~vAvKvi~k~~---~~~~~~~~~~~~E~~IL~~L~-H--PnIV~L~~~  399 (730)
                      ...++.| +.|....+|+....   .   ++..+++|+.....   ...   ...+.+|..+|+.|. +  -.+++++.+
T Consensus        22 v~~~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~---~~~~~~E~~~l~~L~~~~~vpvP~v~~~   98 (357)
T 3ats_A           22 VTVESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFP---TYRLDHQFEVIRLVGELTDVPVPRVRWI   98 (357)
T ss_dssp             EEEEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSS---CCCHHHHHHHHHHHHHHCCSCCCCEEEE
T ss_pred             eEEEEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCc---hhHHHHHHHHHHHHhhcCCCCCCcEEEE
Confidence            4456788 89999999998764   1   15578899875432   101   123567888888873 3  357788877


Q ss_pred             cccc---ceeeEEeeecCCCCccc
Q 004790          400 FETD---RFSCLVMEYCPGGDLHT  420 (730)
Q Consensus       400 f~~~---~~l~LVmEy~~GGsL~~  420 (730)
                      ..+.   +..|+||||++|..|..
T Consensus        99 ~~~~~~~g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A           99 ETTGDVLGTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             ECSSTTTSSCEEEEECCCCBCCCB
T ss_pred             ccCCCccCCceEEEEecCCCChhh
Confidence            7655   45689999999987754

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.81  E-value=0.00015  Score=77.16  Aligned_cols=78  Identities=17%  Similarity=0.207  Sum_probs=61.3

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC---CCCCccccccccccceeeEE
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD---HPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~---HPnIV~L~~~f~~~~~l~LV  409 (730)
                      ..-++.|+.|.+..+|+...  ++..+++|+.....      ...+.+|...|+.|.   ...+++++.+....+..|+|
T Consensus        38 i~~~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~~------~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lv  109 (312)
T 3jr1_A           38 IKHKEKLYSGEMNEIWLIND--EVQTVFVKINERSY------RSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLL  109 (312)
T ss_dssp             CCEEEEECCSSSSEEEEEES--SSCEEEEEEEEGGG------HHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEE
T ss_pred             eeeeEEeCCccceeeeEEEE--CCCeEEEEeCCccc------HHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEE
Confidence            34567899999999999975  34578899876432      345678999998873   36788999888877889999


Q ss_pred             eeecCCCCc
Q 004790          410 MEYCPGGDL  418 (730)
Q Consensus       410 mEy~~GGsL  418 (730)
                      |||++|..+
T Consensus       110 me~l~G~~~  118 (312)
T 3jr1_A          110 LEALNKSKN  118 (312)
T ss_dssp             EECCCCCCC
T ss_pred             EEeccCCCC
Confidence            999999865

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.74  E-value=0.00023  Score=74.59  Aligned_cols=144  Identities=17%  Similarity=0.146  Sum_probs=82.8

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCC--CCccccccc------cc
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP--FLPTLYTHF------ET  402 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HP--nIV~L~~~f------~~  402 (730)
                      ....-++.|+.|....+|++...+ + .+++|+.....     ....+..|..+++.|...  .+++++..-      ..
T Consensus        22 ~~~~~~~~i~~G~~n~~~~v~~~~-g-~~vlk~~~~~~-----~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~   94 (322)
T 2ppq_A           22 GSLTSYKGIAEGVENSNFLLHTTK-D-PLILTLYEKRV-----EKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGEL   94 (322)
T ss_dssp             CCEEEEEEECC---EEEEEEEESS-C-CEEEEEECC--------CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEE
T ss_pred             CcceEeeccCCCcccceEEEEeCC-c-cEEEEEeCCCC-----CHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEE
Confidence            445567889999999999998653 3 58899987531     112345677777766321  244444321      22


Q ss_pred             cceeeEEeeecCCCCcccc--------------ccc----cCCC-----CccHHHH---------HH----hHHHHHHHH
Q 004790          403 DRFSCLVMEYCPGGDLHTL--------------RQR----QPGK-----HFSEYAA---------RF----YAAEVLLAL  446 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~l--------------l~~----~~~~-----~lse~~a---------~~----~~~qIl~AL  446 (730)
                      ++..++||+|++|..+...              ++.    ....     .+.....         ..    +...+...+
T Consensus        95 ~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~  174 (322)
T 2ppq_A           95 SGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEI  174 (322)
T ss_dssp             TTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHH
T ss_pred             CCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            3567899999998764220              110    0000     0000000         00    111234455


Q ss_pred             HHhHh-------cceeecccCCccEEecCCCceEEecccccc
Q 004790          447 EYLHM-------LGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       447 ~yLH~-------~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      ++|+.       .+++|+|+.+.|||++.++.+.|+||+.+.
T Consensus       175 ~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          175 DYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             HHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            55552       479999999999999877666899999874

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.61  E-value=0.00015  Score=75.78  Aligned_cols=134  Identities=13%  Similarity=0.060  Sum_probs=76.3

Q ss_pred             EeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeEEeeec-
Q 004790          336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCLVMEYC-  413 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~LVmEy~-  413 (730)
                      ++.|+.|....+|++      ..+++|+.....    .......+|..+++.+. +...++++.++.+  .-++|+||+ 
T Consensus        23 i~~l~gG~tN~~~~~------~~~vlR~~~~~~----~~~~~r~~E~~~l~~l~~~g~~P~~~~~~~~--~~~~v~e~i~   90 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA------GDLCLRIPGKGT----EEYINRANEAVAAREAAKAGVSPEVLHVDPA--TGVMVTRYIA   90 (301)
T ss_dssp             CEEEESCSSEEEEEE------TTEEEEEECC--------CCCHHHHHHHHHHHHHTTSSCCEEEECTT--TCCEEEECCT
T ss_pred             eeEcCCcccccccee------eeEEEECCCCCc----cceeCHHHHHHHHHHHHHcCCCCceEEEECC--CCEEEEeecC
Confidence            688999999999999      348899876431    11112346888887773 3233677765443  346899999 


Q ss_pred             CCCCcccc------------------ccccCC---CCcc-HHHHHHhHH--------------HHHHHHHHhH-------
Q 004790          414 PGGDLHTL------------------RQRQPG---KHFS-EYAARFYAA--------------EVLLALEYLH-------  450 (730)
Q Consensus       414 ~GGsL~~l------------------l~~~~~---~~ls-e~~a~~~~~--------------qIl~AL~yLH-------  450 (730)
                      +|.+|...                  ++....   ..+. ......+..              .+...+..|.       
T Consensus        91 ~g~~l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  170 (301)
T 3dxq_A           91 GAQTMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHP  170 (301)
T ss_dssp             TCEECCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSC
T ss_pred             CCccCCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcC
Confidence            76655320                  000000   0000 111111111              1111122221       


Q ss_pred             -hcceeecccCCccEEecCCCceEEeccccccc
Q 004790          451 -MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       451 -~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                       ...++|+|+.+.||| ..++.+.|+||..+..
T Consensus       171 ~~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          171 LPLAACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             CCCEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             CCceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence             124899999999999 5677899999998743

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.61  E-value=0.00013  Score=80.15  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=28.0

Q ss_pred             HhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       450 H~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      +...++|+|++|.|||++.++ ++|+||+.+..
T Consensus       230 ~~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          230 RAQALIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             BCCEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CCCeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            457899999999999998776 99999998854

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.51  E-value=0.00045  Score=76.52  Aligned_cols=75  Identities=24%  Similarity=0.337  Sum_probs=52.1

Q ss_pred             EEeEEccCCcEEEEEEEECC-------CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCcccccccccccee
Q 004790          335 LLKRLGCGDIGSVYLSELSS-------TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFS  406 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~-------t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l  406 (730)
                      -++.|+.|-...||++....       .+..|++|+.....  .   ...+.+|..+++.|. +...+++++.+.+.   
T Consensus        77 ~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~--~---~~~li~E~~~l~~L~~~g~~P~l~~~~~~g---  148 (429)
T 1nw1_A           77 RISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE--T---ESHLVAESVIFTLLSERHLGPKLYGIFSGG---  148 (429)
T ss_dssp             EEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC--C---HHHHHHHHHHHHHHHHTTSSSCEEEEETTE---
T ss_pred             EEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC--c---HHHHHHHHHHHHHHHhCCCCCcEEEEeCCC---
Confidence            46788999999999998753       24679999984321  1   022346888888873 43457788776542   


Q ss_pred             eEEeeecCCCCc
Q 004790          407 CLVMEYCPGGDL  418 (730)
Q Consensus       407 ~LVmEy~~GGsL  418 (730)
                       +||||++|..|
T Consensus       149 -~v~e~l~G~~l  159 (429)
T 1nw1_A          149 -RLEEYIPSRPL  159 (429)
T ss_dssp             -EEECCCCEEEC
T ss_pred             -EEEEEeCCccc
Confidence             89999987555

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.48  E-value=0.00024  Score=77.73  Aligned_cols=143  Identities=19%  Similarity=0.273  Sum_probs=86.6

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECC-------CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccc
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSS-------TRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFET  402 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~-------t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~  402 (730)
                      +.++ ++.|..|-...+|++....       .+..|.+|+.....    .......+|..+++.| .+...+++++.+.+
T Consensus        51 ~~l~-v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~----~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~  125 (379)
T 3feg_A           51 EELR-VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL----QGVDSLVLESVMFAILAERSLGPQLYGVFPE  125 (379)
T ss_dssp             GGCC-CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC-------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT
T ss_pred             CceE-EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc----chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC
Confidence            4444 3567778889999998742       34679999864321    1123355899999887 34445788887765


Q ss_pred             cceeeEEeeecCCCCccc--cc---------------ccc--C-CCCc--cHHHHHHhHHHHHH----------------
Q 004790          403 DRFSCLVMEYCPGGDLHT--LR---------------QRQ--P-GKHF--SEYAARFYAAEVLL----------------  444 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~--ll---------------~~~--~-~~~l--se~~a~~~~~qIl~----------------  444 (730)
                      +    +||||++|..|..  +.               +..  + ++..  -..++..|..++..                
T Consensus       126 g----~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~  201 (379)
T 3feg_A          126 G----RLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYS  201 (379)
T ss_dssp             E----EEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTT
T ss_pred             c----cEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHH
Confidence            3    9999999876642  11               000  0 1111  23445555544422                


Q ss_pred             ---HHHHhH--------hcceeecccCCccEEecCC----CceEEeccccccc
Q 004790          445 ---ALEYLH--------MLGVVYRDLKPENVLVRDD----GHIMLSDFDLSLR  482 (730)
Q Consensus       445 ---AL~yLH--------~~gIVHRDLKPeNILl~~~----g~vKL~DFGlA~~  482 (730)
                         .++.|.        ...++|+|+.+.|||++.+    +.+.|+||..+..
T Consensus       202 l~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~  254 (379)
T 3feg_A          202 LKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY  254 (379)
T ss_dssp             HHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred             HHHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence               233332        1359999999999999876    7899999998853

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=97.45  E-value=0.00032  Score=75.40  Aligned_cols=76  Identities=18%  Similarity=0.262  Sum_probs=47.0

Q ss_pred             EEeEEccCCcEEEEEEEECCC--------CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccce
Q 004790          335 LLKRLGCGDIGSVYLSELSST--------RCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRF  405 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~t--------~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~  405 (730)
                      -++.|+.|....+|++.....        +..+++|+......    .+....+|..+|+.|. +..++++++.+.    
T Consensus        37 ~~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~----~~~~~~~E~~~l~~L~~~g~~P~~~~~~~----  108 (369)
T 3c5i_A           37 RVKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD----ELYNTISEFEVYKTMSKYKIAPQLLNTFN----  108 (369)
T ss_dssp             EEEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG----GTSCHHHHHHHHHHHHHTTSSCCEEEEET----
T ss_pred             EEEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc----ceecHHHHHHHHHHHHhcCCCCceEEecC----
Confidence            356788898999999987541        25789998764321    1112356888888773 333567776552    


Q ss_pred             eeEEeeecCCCCc
Q 004790          406 SCLVMEYCPGGDL  418 (730)
Q Consensus       406 l~LVmEy~~GGsL  418 (730)
                      -++||||++|..|
T Consensus       109 ~~~v~e~i~G~~l  121 (369)
T 3c5i_A          109 GGRIEEWLYGDPL  121 (369)
T ss_dssp             TEEEEECCCSEEC
T ss_pred             CcEEEEEecCCcC
Confidence            2689999988654

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=97.30  E-value=0.00071  Score=75.76  Aligned_cols=76  Identities=13%  Similarity=0.185  Sum_probs=51.1

Q ss_pred             EEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCC-CccccccccccceeeEEeeec
Q 004790          335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF-LPTLYTHFETDRFSCLVMEYC  413 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPn-IV~L~~~f~~~~~l~LVmEy~  413 (730)
                      -++.|+.|-...+|++.....+..|++|+......   ..+ ...+|..+|+.|...+ .+++++.|..    .+||||+
T Consensus       112 ~i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~---~~i-dR~~E~~vl~~L~~~gl~P~ll~~~~~----G~v~e~I  183 (458)
T 2qg7_A          112 EFQIINGGITNILIKVKDMSKQAKYLIRLYGPKTD---EII-NREREKKISCILYNKNIAKKIYVFFTN----GRIEEFM  183 (458)
T ss_dssp             EEEEECC--CEEEEEEEETTTTEEEEEEEECC-CC---SCS-CHHHHHHHHHHHTTSSSBCCEEEEETT----EEEEECC
T ss_pred             EEEEcCCCeEeEEEEEEECCCCceEEEEECCCChh---hhc-CHHHHHHHHHHHHhcCCCCCEEEEeCC----eEEEEee
Confidence            46788999999999998865457789998754210   001 1257999999885433 4678887743    2599999


Q ss_pred             CCCCc
Q 004790          414 PGGDL  418 (730)
Q Consensus       414 ~GGsL  418 (730)
                      +|..|
T Consensus       184 ~G~~l  188 (458)
T 2qg7_A          184 DGYAL  188 (458)
T ss_dssp             CSEEC
T ss_pred             CCccC
Confidence            98655

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.26  E-value=0.00081  Score=69.68  Aligned_cols=83  Identities=17%  Similarity=0.060  Sum_probs=57.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-C--CCCccccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-H--PFLPTLYTHFETDR  404 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-H--PnIV~L~~~f~~~~  404 (730)
                      +......-++.+|.|..+.||+.+.. +|+.|.+|+........   ...+.+|...|+.|. .  --+++.+.+.    
T Consensus        12 l~G~~v~~v~~~g~G~~~~vyrv~l~-DG~~~~vK~~~~~~~~~---~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----   83 (288)
T 3f7w_A           12 LTGREVAAVAERGHSHRWHLYRVELA-DGTPLFVKALPDDAPAL---DGLFRAEALGLDWLGRSFGSPVPQVAGWD----   83 (288)
T ss_dssp             HHCCCEEEEEEEEEETTEEEEEEEET-TSCEEEEEECCTTCCCC---TTHHHHHHHHHHHHTCSTTCCSCCEEEEE----
T ss_pred             hcCCCeEEEEecCCCCCeEEEEEEEC-CCCEEEEEEeCCCCcch---hhHHHHHHHHHHHHHhhCCCCcceEEecc----
Confidence            33456778899999999999999875 56789999865432211   123678999999883 2  2355555542    


Q ss_pred             eeeEEeeecCCCCc
Q 004790          405 FSCLVMEYCPGGDL  418 (730)
Q Consensus       405 ~l~LVmEy~~GGsL  418 (730)
                      .-++||||+.++..
T Consensus        84 ~~~lv~e~l~~~~~   97 (288)
T 3f7w_A           84 DRTLAMEWVDERPP   97 (288)
T ss_dssp             TTEEEEECCCCCCC
T ss_pred             CceEEEEeecccCC
Confidence            24799999987654

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=97.25  E-value=0.00082  Score=70.56  Aligned_cols=137  Identities=16%  Similarity=0.123  Sum_probs=77.6

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC--CCCcccccc-----ccccceeeEE
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH--PFLPTLYTH-----FETDRFSCLV  409 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H--PnIV~L~~~-----f~~~~~l~LV  409 (730)
                      ..|+ |....||++... +|+.+++|+...... .   ...+..|..+++.|..  -.+++++..     ...++..++|
T Consensus        32 ~~l~-g~~n~~y~v~~~-~g~~~vlK~~~~~~~-~---~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l  105 (328)
T 1zyl_A           32 TPLN-SYENRVYQFQDE-DRRRFVVKFYRPERW-T---ADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAV  105 (328)
T ss_dssp             EEEC-CSSSEEEEECCT-TCCCEEEEEECTTTS-C---HHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEE
T ss_pred             Eeec-CcccceEEEEcC-CCCEEEEEEcCCCCC-C---HHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEE
Confidence            4566 888899988653 345689999863321 1   1235568888777732  124555543     1224566889


Q ss_pred             eeecCCCCccc-----c---------ccc----cC---CCCccHHH----H------------------HHhHHHHHHHH
Q 004790          410 MEYCPGGDLHT-----L---------RQR----QP---GKHFSEYA----A------------------RFYAAEVLLAL  446 (730)
Q Consensus       410 mEy~~GGsL~~-----l---------l~~----~~---~~~lse~~----a------------------~~~~~qIl~AL  446 (730)
                      |||++|..+..     +         ++.    ..   ...++...    .                  ...+.+++..+
T Consensus       106 ~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  185 (328)
T 1zyl_A          106 FPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAV  185 (328)
T ss_dssp             EECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHH
Confidence            99998865421     0         000    00   00111110    0                  00111222222


Q ss_pred             HHh----HhcceeecccCCccEEecCCCceEEecccccc
Q 004790          447 EYL----HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       447 ~yL----H~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      +-+    +...++|+|+++.|||++ + .+.|+||+.+.
T Consensus       186 ~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~  222 (328)
T 1zyl_A          186 TAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDAR  222 (328)
T ss_dssp             HHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred             HHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence            222    234689999999999998 4 89999998774

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.20  E-value=0.00074  Score=71.32  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=27.6

Q ss_pred             hcceeecccCCccEEecCC----CceEEeccccccc
Q 004790          451 MLGVVYRDLKPENVLVRDD----GHIMLSDFDLSLR  482 (730)
Q Consensus       451 ~~gIVHRDLKPeNILl~~~----g~vKL~DFGlA~~  482 (730)
                      ...++|+|+.+.|||++.+    +.+.|+||+.+..
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            3579999999999999874    6899999998854

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=97.17  E-value=0.0025  Score=68.02  Aligned_cols=72  Identities=11%  Similarity=0.107  Sum_probs=46.1

Q ss_pred             EeEE--ccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc---CCCCCcccccc------ccccc
Q 004790          336 LKRL--GCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL---DHPFLPTLYTH------FETDR  404 (730)
Q Consensus       336 l~~L--G~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L---~HPnIV~L~~~------f~~~~  404 (730)
                      ++.|  |.|....||++.... + .|++|+......         .+|..+++.|   .-|++++.+..      ...++
T Consensus        26 ~~~l~~G~g~~N~vy~v~~~~-g-~~vLK~~~~~~~---------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g   94 (339)
T 3i1a_A           26 AQFIQGGADTNAFAYQADSES-K-SYFIKLKYGYHD---------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKH   94 (339)
T ss_dssp             EEEETTTSCSSCEEEEEECSS-C-EEEEEEEECSSC---------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSS
T ss_pred             eEEeeccCccccceEEEEeCC-C-CEEEEEecCccc---------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECC
Confidence            4555  344478999997643 4 799998765431         3466666655   22335555543      23457


Q ss_pred             eeeEEeeecCCCCc
Q 004790          405 FSCLVMEYCPGGDL  418 (730)
Q Consensus       405 ~l~LVmEy~~GGsL  418 (730)
                      ..|+||+|++|..+
T Consensus        95 ~~~~l~~~i~G~~~  108 (339)
T 3i1a_A           95 FKIIAYPFIHAPNG  108 (339)
T ss_dssp             EEEEEEECCCCCBT
T ss_pred             EEEEEEeccCCCcC
Confidence            78999999998766

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=96.55  E-value=0.0053  Score=68.05  Aligned_cols=76  Identities=14%  Similarity=0.298  Sum_probs=51.1

Q ss_pred             EEeEEccCCcEEEEEEEECCC-------CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccccccee
Q 004790          335 LLKRLGCGDIGSVYLSELSST-------RCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDRFS  406 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~t-------~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~~l  406 (730)
                      -++.|..|-...+|++.....       +..|++|+.....    ...-...+|..+++.| .+...+++++.+.    -
T Consensus        74 ~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t----~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~  145 (424)
T 3mes_A           74 EVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV----GKFYDSKVELDVFRYLSNINIAPNIIADFP----E  145 (424)
T ss_dssp             EEEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-----CCCCHHHHHHHHHHHHHTTSSCCEEEEET----T
T ss_pred             EEEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc----chhcCHHHHHHHHHHHHhcCCCCCEEEEcC----C
Confidence            456777888899999987531       4679999875421    1111235688888877 3444677776543    2


Q ss_pred             eEEeeecCCCCc
Q 004790          407 CLVMEYCPGGDL  418 (730)
Q Consensus       407 ~LVmEy~~GGsL  418 (730)
                      ++||||++|..|
T Consensus       146 ~~I~efI~G~~l  157 (424)
T 3mes_A          146 GRIEEFIDGEPL  157 (424)
T ss_dssp             EEEEECCCSEEC
T ss_pred             CEEEEEeCCccC
Confidence            689999998765

>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=96.40  E-value=0.0011  Score=54.22  Aligned_cols=30  Identities=13%  Similarity=0.114  Sum_probs=27.7

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCCCCC
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHSSID  228 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~~i~  228 (730)
                      +.+||++|++|++++|++|...+.+.|++|
T Consensus        36 l~~qg~~C~~C~~~~Hk~C~~~v~~~C~~~   65 (65)
T 2enz_A           36 LARQGLKCDACGMNVHHRCQTKVANLCGIN   65 (65)
T ss_dssp             SSSCSEEESSSCCEECTTTTTTSCSCTTTC
T ss_pred             cCCcccccCCCCCccCHhHHhhCcCcCCCC
Confidence            468999999999999999999999999875

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=95.74  E-value=0.021  Score=57.81  Aligned_cols=59  Identities=15%  Similarity=0.060  Sum_probs=43.3

Q ss_pred             CccccccccCCCCccHHHHHHhHHHHHHHHHHh-HhcceeecccCCccEEecCCCceEEec
Q 004790          417 DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL-HMLGVVYRDLKPENVLVRDDGHIMLSD  476 (730)
Q Consensus       417 sL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yL-H~~gIVHRDLKPeNILl~~~g~vKL~D  476 (730)
                      +|.++|+.. +.+++|++++.++.|.+.+|.-+ +.+.-..+=+-|..|+|..+|.|-+.+
T Consensus        34 SL~eIL~~~-~~PlsEEqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~~dG~V~f~~   93 (229)
T 2yle_A           34 SLEEILRLY-NQPINEEQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVWRDGAVTLAP   93 (229)
T ss_dssp             EHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEETTSCEEECC
T ss_pred             cHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEecCCceeccc
Confidence            567777654 46899999999999999988766 211222444567899999999887664

>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.73  E-value=0.0032  Score=54.20  Aligned_cols=35  Identities=17%  Similarity=0.128  Sum_probs=30.6

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCCCCCCccce
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVV  233 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~~i~s~~~~  233 (730)
                      +.+||++|++|++++|++|...+.+.|+.+.+...
T Consensus        41 l~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~~~e~r   75 (85)
T 2eli_A           41 LIHQGMKCDTCDMNVHKQCVINVPSLCGMDHTEKR   75 (85)
T ss_dssp             SSSCEEECSSSCCEEETTTTTTSCSCCCCCCCCCC
T ss_pred             cccCCCcCCCcCCccCHhHHhhcCCcCCcchhhCc
Confidence            46899999999999999999999999997766543

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=95.14  E-value=0.12  Score=56.32  Aligned_cols=30  Identities=27%  Similarity=0.397  Sum_probs=25.4

Q ss_pred             ceeecccCCccEEe------cCCCceEEeccccccc
Q 004790          453 GVVYRDLKPENVLV------RDDGHIMLSDFDLSLR  482 (730)
Q Consensus       453 gIVHRDLKPeNILl------~~~g~vKL~DFGlA~~  482 (730)
                      .++|.|+.+.|||+      +.++.++|+||.+|..
T Consensus       245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            36899999999999      3467899999999854

>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*

Probab=94.94  E-value=0.0012  Score=53.82  Aligned_cols=32  Identities=13%  Similarity=0.099  Sum_probs=28.4

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCCCCCCc
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHSSIDST  230 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~~i~s~  230 (730)
                      +.+||++|.+|++++|++|...+...|++..+
T Consensus        33 l~~qg~~C~~C~~~~Hk~C~~~v~~~C~~~~~   64 (65)
T 3uej_A           33 LVKQGLKCEDCGMNVHHKCREKVANLCEFIVT   64 (65)
T ss_dssp             SSSCEEEETTTCCEECHHHHTTSCSEEEEECC
T ss_pred             cCceeeECCCCCCeEchhHhhhCCCcCCCccc
Confidence            46899999999999999999999888986554

>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}

Probab=94.87  E-value=0.0046  Score=51.61  Aligned_cols=28  Identities=7%  Similarity=0.082  Sum_probs=25.6

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCCC
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHSS  226 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~~  226 (730)
                      +.+||++|++|++++|++|...|...|+
T Consensus        45 l~~qG~kC~~C~~~cHkkC~~~V~~~C~   72 (72)
T 2fnf_X           45 VLRQALRCANCKFTCHSECRSLIQLDCR   72 (72)
T ss_dssp             CSSCCEECTTSSCEECTGGGGGCCSCCC
T ss_pred             HHhCcCccCCCCCeechhhhccCcCCCC
Confidence            4899999999999999999999988774

>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.82  E-value=0.0068  Score=51.85  Aligned_cols=32  Identities=6%  Similarity=-0.020  Sum_probs=27.9

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCCCCCCc
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHSSIDST  230 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~~i~s~  230 (730)
                      +.+|||+|++|++++|++|...+.+.|.....
T Consensus        41 l~kqg~~C~~C~~~~Hk~C~~~v~~~C~~~~~   72 (83)
T 2yuu_A           41 LNKQGYKCRQCNAAIHKKCIDKIIGRCTGTAA   72 (83)
T ss_dssp             SSCCEEEETTTCCEECTTGGGTCCSCCSSCCC
T ss_pred             ccccccccCCcCCeeChhhhhhCCCcCCCccc
Confidence            46899999999999999999999989875443

>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=94.52  E-value=0.0078  Score=50.75  Aligned_cols=29  Identities=10%  Similarity=-0.011  Sum_probs=26.3

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCCCC
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHSSI  227 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~~i  227 (730)
                      +.+||++|++|++++|++|...+.+.|+.
T Consensus        47 l~kqG~~C~~C~~~~Hk~C~~~v~~~C~~   75 (77)
T 2enn_A           47 LNKQGYQCRQCNAAIHKKCIDKVIAKCTG   75 (77)
T ss_dssp             TTCCEEECSSSCCEEESGGGSSCCSCCCC
T ss_pred             ccccccCcCCCCCcCCHhHHhhCcCCCCC
Confidence            46899999999999999999999888863

>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A

Probab=93.89  E-value=0.011  Score=45.76  Aligned_cols=28  Identities=14%  Similarity=0.071  Sum_probs=25.1

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCCC
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHSS  226 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~~  226 (730)
                      +|.||++|++|++++|++|...+.+.|+
T Consensus        23 ~l~qG~~C~~C~~~~H~~C~~~v~~~C~   50 (52)
T 1faq_A           23 FLLNGFRCQTCGYKFHEHCSTKVPTMCV   50 (52)
T ss_dssp             EECSEEECTTTTCCBCSTTSSSSSSCCC
T ss_pred             ccccCCEeCCCCCeEChhHHhhCcCcCC
Confidence            3459999999999999999999988875

>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*

Probab=93.89  E-value=0.0046  Score=47.42  Aligned_cols=27  Identities=11%  Similarity=0.130  Sum_probs=23.9

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCC
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHS  225 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~  225 (730)
                      +.+||++|++|++++|++|...+.+.|
T Consensus        24 ~~~qg~~C~~C~~~~H~~C~~~v~~~C   50 (50)
T 1ptq_A           24 LVKQGLKCEDCGMNVHHKCREKVANLC   50 (50)
T ss_dssp             SSSCEEEETTTCCEECHHHHTTSCSCC
T ss_pred             cCCccCEeCCCCCeECHHHhhhcCCCC
Confidence            468999999999999999999887654

>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}

Probab=93.82  E-value=0.0064  Score=48.65  Aligned_cols=27  Identities=7%  Similarity=0.063  Sum_probs=24.9

Q ss_pred             CCCCcccceeEeeccCCCCCCCCCCCC
Q 004790          200 LPPDSEEKECVWDASLPPSGNVSPHSS  226 (730)
Q Consensus       200 ~~~~~~~~~c~~~~~~~~~~~~sp~~~  226 (730)
                      .+||++|++|++++|++|...+...|+
T Consensus        33 ~kqg~kC~~C~~~cH~kC~~~v~~~C~   59 (59)
T 1rfh_A           33 LRQALRCANCKFTCHSECRSLIQLDCR   59 (59)
T ss_dssp             CSCCEECTTTSCEECHHHHTTCCCCCC
T ss_pred             hhCccEeCCCCCeEehhhhhhCcCCCC
Confidence            799999999999999999999987764

>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=93.70  E-value=0.0053  Score=52.77  Aligned_cols=31  Identities=10%  Similarity=0.178  Sum_probs=27.7

Q ss_pred             CCCC--CcccceeEeeccCCCCC---CCCCCCCCCC
Q 004790          199 LLPP--DSEEKECVWDASLPPSG---NVSPHSSIDS  229 (730)
Q Consensus       199 ~~~~--~~~~~~c~~~~~~~~~~---~~sp~~~i~s  229 (730)
                      +.+|  ||||+.|.+++|++|..   ++.+.|+++.
T Consensus        48 l~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~C~~~~   83 (84)
T 2row_A           48 MFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKVYY   83 (84)
T ss_dssp             SSSCCCEEEESSSCCEEEHHHHHHTCTTCCCCSTTT
T ss_pred             cccCCCCCEecCCCCccchhHhCCccccccccCcCC
Confidence            4677  99999999999999999   8999999764

>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.56  E-value=0.0065  Score=50.84  Aligned_cols=29  Identities=14%  Similarity=-0.097  Sum_probs=25.1

Q ss_pred             CCCCcccceeEeeccCCCCCCCCCC-CCCC
Q 004790          200 LPPDSEEKECVWDASLPPSGNVSPH-SSID  228 (730)
Q Consensus       200 ~~~~~~~~~c~~~~~~~~~~~~sp~-~~i~  228 (730)
                      .+||++|+.|++++|++|...+.+. |...
T Consensus        42 ~kqG~~C~~C~~~~Hk~C~~~v~~~~C~~~   71 (74)
T 2db6_A           42 NKFGLRCKNCKTNIHEHCQSYVEMQRCSGP   71 (74)
T ss_dssp             HHEEEEESSSCCEECTTTTGGGSSSBCCCC
T ss_pred             cCCccccCCCCCccChhHHhhCCCCcCCCC
Confidence            5799999999999999999999764 7643

>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}

Probab=93.20  E-value=0.0064  Score=49.68  Aligned_cols=28  Identities=7%  Similarity=0.016  Sum_probs=24.7

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCCC
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHSS  226 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~~  226 (730)
                      +.+||++|++|++++|++|..++...|+
T Consensus        37 l~~qg~~C~~C~~~~Hk~C~~~v~~~C~   64 (66)
T 1y8f_A           37 IARQGMRCTECGVKCHEKCQDLLNADCK   64 (66)
T ss_dssp             SCCEEEEETTTCCEECTTHHHHSCCCC-
T ss_pred             cCcceeEcCCCCCeeCHHHHhhCcCcCC
Confidence            4689999999999999999999888775

>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A

Probab=90.48  E-value=0.064  Score=41.30  Aligned_cols=27  Identities=11%  Similarity=0.083  Sum_probs=22.9

Q ss_pred             CCCCCCcccceeEeeccCCCCCCCCCCC
Q 004790          198 SLLPPDSEEKECVWDASLPPSGNVSPHS  225 (730)
Q Consensus       198 ~~~~~~~~~~~c~~~~~~~~~~~~sp~~  225 (730)
                      .+|.||++|++|+.+.|.+|...+ |.|
T Consensus        22 k~i~~G~kC~~Ck~~cH~kC~~~v-p~c   48 (49)
T 1kbe_A           22 KSMIFGVKCKHCRLKCHNKCTKEA-PAC   48 (49)
T ss_dssp             CSSCCEEEETTTTEEESSSCTTTS-CCC
T ss_pred             ceeECcCCCCCCCCccchhhcCcC-CCC
Confidence            456799999999999999999955 654

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=85.25  E-value=0.13  Score=59.01  Aligned_cols=33  Identities=15%  Similarity=0.113  Sum_probs=25.3

Q ss_pred             CCCCCCcccceeEeeccCCCCCCCCCCCCCCCcc
Q 004790          198 SLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTG  231 (730)
Q Consensus       198 ~~~~~~~~~~~c~~~~~~~~~~~~sp~~~i~s~~  231 (730)
                      .+.+||++|..|+++||++|...+ |.|+.....
T Consensus       541 gl~~qg~~C~~C~~~vHk~C~~~v-~~C~~~~~~  573 (587)
T 3ky9_A          541 GTFYQGYRCHRCRASAHKECLGRV-PPCGRHGQD  573 (587)
T ss_dssp             SSSCCEEEETTTCCEECSGGGGGS-CCC------
T ss_pred             ccccCCcCCCCCCCccchhhhhcC-CCCCCCCcc
Confidence            467899999999999999999999 899866543

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=84.47  E-value=0.14  Score=55.94  Aligned_cols=35  Identities=14%  Similarity=0.086  Sum_probs=25.0

Q ss_pred             CCCCCCcccceeEeeccCCCCCCCCCCCCCCCccce
Q 004790          198 SLLPPDSEEKECVWDASLPPSGNVSPHSSIDSTGVV  233 (730)
Q Consensus       198 ~~~~~~~~~~~c~~~~~~~~~~~~sp~~~i~s~~~~  233 (730)
                      .+.+||++|+.|.++||++|+..+.+ |+.+..+.+
T Consensus       369 g~~~qg~~C~~C~~~~h~~C~~~~~~-C~~~~~~~~  403 (406)
T 2vrw_B          369 GTFYQGYRCYRCRAPAHKECLGRVPP-CGRHGQDFA  403 (406)
T ss_dssp             SSSSCEEEETTTCCEECGGGGGGSCC-C--------
T ss_pred             eeCCCCCCCCCCcCccchhhhhhCCC-CCCCchhhc
Confidence            46899999999999999999999975 987765443

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=82.80  E-value=0.24  Score=57.70  Aligned_cols=30  Identities=7%  Similarity=-0.109  Sum_probs=0.0

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCCCCC
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHSSID  228 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~~i~  228 (730)
                      +.+||++|+.|+++||++|...+...|...
T Consensus        61 ~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~   90 (674)
T 3pfq_A           61 FGKQGFQCQVCSFVVHKRCHEFVTFSCPGA   90 (674)
T ss_dssp             ------------------------------
T ss_pred             cCCceeECCCCCCCcChhhcCcCcccCCCc
Confidence            468999999999999999999998888443

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=80.39  E-value=0.13  Score=57.52  Aligned_cols=61  Identities=10%  Similarity=0.046  Sum_probs=16.0

Q ss_pred             eEEccCCcEEEEEEEECCCCeEEEE------EEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc
Q 004790          337 KRLGCGDIGSVYLSELSSTRCYFAM------KVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE  401 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~~t~~~vAv------Kvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~  401 (730)
                      +.||   ||.||++.+......||+      |.++...+ .++....+.+|..+++.++|||+++.+.+-.
T Consensus       148 ~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~-~~e~~~~~~rea~l~~~~~H~niv~~h~f~~  214 (463)
T 3cxl_A          148 EHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGV-SEKRLTSLVRRATLKENEQIPKYEKIHNFKV  214 (463)
T ss_dssp             TTSS---BCCC---------CCBGGGC------------------------------------CBCCCEEE
T ss_pred             ccCC---chhhhcccccccCCchhhhhccCccccccccc-cccccccccccccccccccccccCCCcceEE
Confidence            4455   999999999776567888      66543332 3344556778999999999999999987553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	730
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	8e-43
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-20
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	5e-42
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-32
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-41
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	6e-25
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-40
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-21
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-40
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	5e-18
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	4e-40
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-39
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-25
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-39
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	6e-25
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-39
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-23
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	7e-39
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-21
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-38
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-21
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	4e-38
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	4e-19
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	8e-38
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-28
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-36
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-15
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-36
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	9e-30
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-36
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-23
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-36
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-25
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-36
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-36
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-36
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	3e-35
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	1e-28
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-35
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-18
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	5e-35
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	5e-13
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	7e-35
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	5e-24
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-34
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-34
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	6e-25
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-34
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-14
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	3e-34
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	3e-34
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	5e-14
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-34
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-21
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	5e-34
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	8e-11
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	8e-34
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-15
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	8e-34
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-18
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	9e-34
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-33
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	3e-23
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-33
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-33
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-33
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-13
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-33
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-14
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	2e-32
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	4e-32
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-15
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	8e-32
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-15
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-31
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-17
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-31
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	8e-10
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-31
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-27
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	6e-31
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-13
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	8e-31
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	9e-20
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-30
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	3e-13
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-30
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-13
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-30
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	7e-30
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-13
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	9e-30
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	6e-12
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-29
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-11
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	5e-29
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-10
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-28
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	3e-13
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	9e-28
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-12
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	7e-27
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	6e-13
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-26
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	7e-11
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-26
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-11
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	8e-26
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-06
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	2e-25
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-24
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-13
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	4e-16

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (391), Expect = 8e-43
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 4/149 (2%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            + ++  LG G  G VY ++   T    A KV+D  S    ++L     E +IL   DHP
Sbjct: 13  FWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKS---EEELEDYMVEIDILASCDHP 69

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
            +  L   F  +    +++E+C GG +  +      +  +E   +    + L AL YLH 
Sbjct: 70  NIVKLLDAFYYENNLWILIEFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYLHD 128

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             +++RDLK  N+L   DG I L+DF +S
Sbjct: 129 NKIIHRDLKAGNILFTLDGDIKLADFGVS 157

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (223), Expect = 2e-20
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 10/125 (8%)

Query: 560 EPTAARSMSFVGTHEYLAPEII-----KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGN 614
             T  R  SF+GT  ++APE++     K   +    D W+ GI L E+   + P      
Sbjct: 161 TRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNP 220

Query: 615 RATLFNVV-GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN 673
              L  +   +          S   +D ++  L K    R       +++ QHPF    +
Sbjct: 221 MRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARW----TTSQLLQHPFVTVDS 276

Query: 674 WALIR 678
              IR
Sbjct: 277 NKPIR 281

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 5e-42
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 2/173 (1%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            F+  K LG G   +V L+   +T   +A+K+++K  +    K+     ER+++  LDHP
Sbjct: 9   DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 68

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
           F   LY  F+ D      + Y   G+L    ++     F E   RFY AE++ ALEYLH 
Sbjct: 69  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHG 126

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGP 504
            G+++RDLKPEN+L+ +D HI ++DF  +   +      + +S         P
Sbjct: 127 KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSP 179

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 1e-32
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 560 EPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF 619
           E   AR+ SFVGT +Y++PE++  +    + D W  G  +++L+ G  PF+         
Sbjct: 161 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 220

Query: 620 NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK--RGATEIKQHPFFEGVNWALI 677
            ++  +  FP+       +RDL+  LLV +   RLG +   G   +K HPFFE V W  +
Sbjct: 221 KIIKLEYDFPEK--FFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL 278

Query: 678 RCSTPPEVP 686
              TPP++ 
Sbjct: 279 HQQTPPKLT 287

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (378), Expect = 3e-41
 Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 2/151 (1%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F + + LG G  G+VYL+    ++   A+KV+ KA L       + + E EI   L 
Sbjct: 5   LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 64

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           HP +  LY +F       L++EY P G ++   Q+     F E     Y  E+  AL Y 
Sbjct: 65  HPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYC 122

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           H   V++RD+KPEN+L+   G + ++DF  S
Sbjct: 123 HSKRVIHRDIKPENLLLGSAGELKIADFGWS 153

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 6e-25
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRA 616
                 ++R  +  GT +YL PE+I+G  H   VD W+ G+  +E L GK PF+ +  + 
Sbjct: 152 WSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE 211

Query: 617 TLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
           T   +   +  FPD    +  +RDLI  LL   P  R        E+ +HP+ 
Sbjct: 212 TYKRISRVEFTFPDF--VTEGARDLISRLLKHNPSQRP----MLREVLEHPWI 258

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  148 bits (376), Expect = 1e-40
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 2/162 (1%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             F  L+ +G G  G+VY +         A+K M  +   S +K      E   LQ L H
Sbjct: 15  KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH 74

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P        +  +  + LVMEYC G     L   +  K   E          L  L YLH
Sbjct: 75  PNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLH 132

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT 492
              +++RD+K  N+L+ + G + L DF  +   A + + + T
Sbjct: 133 SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGT 174

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.4 bits (229), Expect = 4e-21
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHG---SAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
            + SFVGT  ++APE+I     G     VD W+ GI   EL   K P       + L+++
Sbjct: 167 PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHI 226

Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
              +     S   S   R+ +   L K PQ R      +  + +H F 
Sbjct: 227 AQNESPALQSGHWSEYFRNFVDSCLQKIPQDRP----TSEVLLKHRFV 270

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (375), Expect = 3e-40
 Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 5/150 (3%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            F  +  LG G+ G V+      +    A K++            +   E ++L   + P
Sbjct: 7   DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSP 64

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH- 450
           ++   Y  F +D    + ME+  GG L  + ++       E      +  V+  L YL  
Sbjct: 65  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLRE 122

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +++RD+KP N+LV   G I L DF +S
Sbjct: 123 KHKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (206), Expect = 5e-18
 Identities = 29/152 (19%), Positives = 47/152 (30%), Gaps = 46/152 (30%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR----ATLFN 620
            + SFVGT  Y++PE ++G  +    D W+ G+ L E+  G+ P      +         
Sbjct: 159 MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQ 218

Query: 621 VVGQQLRFPDSPAT--------------------------------------SYASRDLI 642
           V G     P  P T                                      S   +D +
Sbjct: 219 VEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFV 278

Query: 643 RGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
              L+K P  R        ++  H F +  + 
Sbjct: 279 NKCLIKNPAERA----DLKQLMVHAFIKRSDA 306

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score =  148 bits (374), Expect = 4e-40
 Identities = 67/350 (19%), Positives = 118/350 (33%), Gaps = 61/350 (17%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QLL 388
              ++L+++LG G    V+ +   +      +K++         K  + + E +IL  L 
Sbjct: 34  QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP------VKKKKIKREIKILENLR 87

Query: 389 DHPFLPTLYTHFE--TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
             P + TL    +    R   LV E+    D   L Q       ++Y  RFY  E+L AL
Sbjct: 88  GGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKAL 142

Query: 447 EYLHMLGVVYRDLKPENVLV-RDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPG 505
           +Y H +G+++RD+KP NV++  +   + L D+ L+                         
Sbjct: 143 DYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH-----------PGQEYNVRVA 191

Query: 506 GSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR 565
             +   P                          +      ++     +L  ++A     +
Sbjct: 192 SRYFKGP--------------------ELLVDYQMYDYSLDMW----SLGCMLASMIFRK 227

Query: 566 SMSFVGTHEYLAPE-IIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
              F G   Y     I K  G     D+        +  +     + S  R   F     
Sbjct: 228 EPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERF----- 282

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
            +   +    S  + D +  LL  + Q RL     A E  +HP+F  V  
Sbjct: 283 -VHSENQHLVSPEALDFLDKLLRYDHQSRL----TAREAMEHPYFYTVVK 327

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  147 bits (372), Expect = 1e-39
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 6/153 (3%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           + H+ + + LG G  G V+     +T   FA K +     + ++ + +   E + + +L 
Sbjct: 25  LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRK---EIQTMSVLR 81

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           HP L  L+  FE D    ++ E+  GG+L      +  K  SE  A  Y  +V   L ++
Sbjct: 82  HPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNK-MSEDEAVEYMRQVCKGLCHM 140

Query: 450 HMLGVVYRDLKPENVLV--RDDGHIMLSDFDLS 480
           H    V+ DLKPEN++   +    + L DF L+
Sbjct: 141 HENNYVHLDLKPENIMFTTKRSNELKLIDFGLT 173

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  106 bits (266), Expect = 1e-25
 Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 10/153 (6%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
                 GT E+ APE+ +G+  G   D W+ G+  + LL G +PF G  +  TL NV   
Sbjct: 181 SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSC 240

Query: 625 QLRFPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTP 682
                DS     S   +D IR LL+ +P  R+       +  +HP+    N        P
Sbjct: 241 DWNMDDSAFSGISEDGKDFIRKLLLADPNTRM----TIHQALEHPWLTPGNAPGRDSQIP 296

Query: 683 PEVPRPMEAELPGKFGA----VDPVGVSSSSSK 711
                 +   +  K+ A    + P+G  S+ S 
Sbjct: 297 SSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSS 329

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  147 bits (372), Expect = 1e-39
 Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 5/156 (3%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           L M+ F + + +G G  G VY    + T   +AMK +DK  +  ++  T A  ER +L L
Sbjct: 1   LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSL 60

Query: 388 L---DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 444
           +   D PF+  +   F T      +++   GGDLH    +     FSE   RFYAAE++L
Sbjct: 61  VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIIL 118

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            LE++H   VVYRDLKP N+L+ + GH+ +SD  L+
Sbjct: 119 GLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 154

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  105 bits (262), Expect = 6e-25
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 565 RSMSFVGTHEYLAPEII-KGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
           +  + VGTH Y+APE++ KG  + S+ DW++ G  L +LL G +PF+    +        
Sbjct: 161 KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRM 220

Query: 624 QQLRFPDSPAT-SYASRDLIRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RC 679
                 + P + S   R L+ GLL ++   RLG   RGA E+K+ PFF  ++W ++  + 
Sbjct: 221 TLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQK 280

Query: 680 STPPEVPRPMEAELPGKF 697
             PP +P   E      F
Sbjct: 281 YPPPLIPPRGEVNAADAF 298

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  147 bits (371), Expect = 1e-39
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 6/151 (3%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
           ++ +L+ LG G  G V+     +T   F  K ++      +  +     E  I+  L HP
Sbjct: 30  YYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKN---EISIMNQLHHP 86

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
            L  L+  FE      L++E+  GG+L      +  K  SE     Y  +    L+++H 
Sbjct: 87  KLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYK-MSEAEVINYMRQACEGLKHMHE 145

Query: 452 LGVVYRDLKPENVLVR--DDGHIMLSDFDLS 480
             +V+ D+KPEN++        + + DF L+
Sbjct: 146 HSIVHLDIKPENIMCETKKASSVKIIDFGLA 176

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  100 bits (250), Expect = 1e-23
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 7/135 (5%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
                  T E+ APEI+  E  G   D W  G+  + LL G +PF G  +  TL NV   
Sbjct: 184 IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRC 243

Query: 625 QLRFPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTP 682
              F +    + S  ++D I+ LL KEP+ RL       +  +HP+ +G + + +    P
Sbjct: 244 DWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRL----TVHDALEHPWLKG-DHSNLTSRIP 298

Query: 683 PEVPRPMEAELPGKF 697
                 +  ++  K+
Sbjct: 299 SSRYNKIRQKIKEKY 313

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 7e-39
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 4/149 (2%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            + L++ LG G  G V L+    T    A+K++D        +    + E  I ++L+H 
Sbjct: 6   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE--NIKKEICINKMLNHE 63

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
            +   Y H        L +EYC GG+L    +        E  A+ +  +++  + YLH 
Sbjct: 64  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHG 121

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +G+ +RD+KPEN+L+ +  ++ +SDF L+
Sbjct: 122 IGITHRDIKPENLLLDERDNLKISDFGLA 150

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.5 bits (232), Expect = 1e-21
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 557 LVAEPTAARSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNR 615
                         GT  Y+APE++K    H   VD W+ GI L  +L G+ P+    + 
Sbjct: 153 FRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDS 212

Query: 616 ATLF-NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
              + +   ++           A   L+  +LV+ P  R+       +IK+  ++
Sbjct: 213 CQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARI----TIPDIKKDRWY 263

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  142 bits (358), Expect = 1e-38
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKK------LTRAQTEREIL 385
           ++   + LG G    V       T   +A+K++D     S               E +IL
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 386 QLL-DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 444
           + +  HP +  L   +ET+ F  LV +    G+L      +     SE   R     +L 
Sbjct: 64  RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLE 121

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
            +  LH L +V+RDLKPEN+L+ DD +I L+DF  S
Sbjct: 122 VICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFS 157

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 92.8 bits (230), Expect = 2e-21
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 12/114 (10%)

Query: 565 RSMSFVGTHEYLAPEIIKGE------GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATL 618
           +     GT  YLAPEII+        G+G  VD W+ G+ ++ LL G  PF        L
Sbjct: 165 KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLML 224

Query: 619 FNVVGQQLRF--PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
             ++    +F  P+    S   +DL+   LV +PQ R      A E   HPFF+
Sbjct: 225 RMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRY----TAEEALAHPFFQ 274

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (355), Expect = 4e-38
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 10/169 (5%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           + +L  +G G  G        S       K +D  S+ +  +     +E  +L+ L HP 
Sbjct: 6   YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM-TEAEKQMLVSEVNLLRELKHPN 64

Query: 393 LPTLYTHF--ETDRFSCLVMEYCPGGDLHTL--RQRQPGKHFSEYAARFYAAEVLLALEY 448
           +   Y      T+    +VMEYC GGDL ++  +  +  ++  E        ++ LAL+ 
Sbjct: 65  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE 124

Query: 449 LHMLG-----VVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT 492
            H        V++RDLKP NV +    ++ L DF L+       +  K 
Sbjct: 125 CHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKA 173

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (212), Expect = 4e-19
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 560 EPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF 619
               + + +FVGT  Y++PE +    +    D W+ G  L+EL     PF     +    
Sbjct: 165 NHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAG 224

Query: 620 NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPF 668
            +   + R      +     ++I  +L  +  HR        EI ++P 
Sbjct: 225 KIREGKFRRIPYRYSDEL-NEIITRMLNLKDYHRP----SVEEILENPL 268

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  141 bits (356), Expect = 8e-38
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 2/151 (1%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  F++L+ LG G  G V+L        Y+AMKV+ K  +   K++     ER +L ++ 
Sbjct: 3   LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVT 62

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           HPF+  ++  F+  +   ++M+Y  GG+L +L ++     F    A+FYAAEV LALEYL
Sbjct: 63  HPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYL 120

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           H   ++YRDLKPEN+L+  +GHI ++DF  +
Sbjct: 121 HSKDIIYRDLKPENILLDKNGHIKITDFGFA 151

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (285), Expect = 2e-28
 Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 5/131 (3%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
            + +  GT +Y+APE++  + +  ++DWW+FGI ++E+L G TPF  S    T   ++  
Sbjct: 157 VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNA 216

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKR-GATEIKQHPFFEGVNWA--LIRCST 681
           +LRFP  P  +   +DL+  L+ ++   RLG  + G  ++K HP+F+ V W   L R   
Sbjct: 217 ELRFP--PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIE 274

Query: 682 PPEVPRPMEAE 692
            P  P   + +
Sbjct: 275 TPYEPPIQQGQ 285

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 1e-36
 Identities = 32/150 (21%), Positives = 66/150 (44%), Gaps = 6/150 (4%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
               + +R+G G  G+VY  +        A+K+++  +  + ++L   + E  +L+   H
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVTAP-TPQQLQAFKNEVGVLRKTRH 63

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
             +      + T     +V ++C G  L+        K F        A +    ++YLH
Sbjct: 64  VNILLFM-GYSTAPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLH 121

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
              +++RDLK  N+ + +D  + + DF L+
Sbjct: 122 AKSIIHRDLKSNNIFLHEDLTVKIGDFGLA 151

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (184), Expect = 2e-15
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHG---SAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
           +     G+  ++APE+I+ +         D + FGI L+EL+ G+ P+    NR  +  +
Sbjct: 162 QFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFM 221

Query: 622 VGQQLRFPD----SPATSYASRDLIRGLLVKEPQHR 653
           VG+    PD          A + L+   L K+   R
Sbjct: 222 VGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDER 257

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (348), Expect = 1e-36
 Identities = 59/152 (38%), Positives = 84/152 (55%), Gaps = 3/152 (1%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL-L 388
           +  F L K LG G  G V+L+E   T  +FA+K + K  +     +     E+ +L L  
Sbjct: 1   IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW 60

Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
           +HPFL  ++  F+T      VMEY  GGDL    Q      F    A FYAAE++L L++
Sbjct: 61  EHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQS--CHKFDLSRATFYAAEIILGLQF 118

Query: 449 LHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           LH  G+VYRDLK +N+L+  DGHI ++DF + 
Sbjct: 119 LHSKGIVYRDLKLDNILLDKDGHIKIADFGMC 150

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 9e-30
 Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 7/140 (5%)

Query: 560 EPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF 619
               A++ +F GT +Y+APEI+ G+ +  +VDWW+FG+ L+E+L G++PF G        
Sbjct: 154 MLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFH 213

Query: 620 NVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI-- 677
           ++      +P        ++DL+  L V+EP+ RLGV     +I+QHP F  +NW  +  
Sbjct: 214 SIRMDNPFYPRW--LEKEAKDLLVKLFVREPEKRLGV---RGDIRQHPLFREINWEELER 268

Query: 678 RCSTPPEVPRPMEAELPGKF 697
           +   PP  P+         F
Sbjct: 269 KEIDPPFRPKVKSPFDCSNF 288

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (346), Expect = 1e-36
 Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 6/161 (3%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            +   +++G G  G+VY +   +T    A++ M+      ++ +     E  +++   +P
Sbjct: 21  KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIIN---EILVMRENKNP 77

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
            +      +       +VMEY  GG L  +          E        E L ALE+LH 
Sbjct: 78  NIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHS 134

Query: 452 LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT 492
             V++RD+K +N+L+  DG + L+DF    +     +   T
Sbjct: 135 NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST 175

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (248), Expect = 1e-23
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV-G 623
           +  + VGT  ++APE++  + +G  VD W+ GI   E++ G+ P+        L+ +   
Sbjct: 172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATN 231

Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPP 683
                 +    S   RD +   L  + + R      A E+ QH F +         S  P
Sbjct: 232 GTPELQNPEKLSAIFRDFLNRCLDMDVEKRG----SAKELLQHQFLKIAKPLS---SLTP 284

Query: 684 EVPRPMEA 691
            +    EA
Sbjct: 285 LIAAAKEA 292

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  138 bits (348), Expect = 2e-36
 Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 2/160 (1%)

Query: 324 RDGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE 383
                 +  F  +K LG G  G V L +   +  ++AMK++DK  +   K++     E+ 
Sbjct: 34  SQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKR 93

Query: 384 ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVL 443
           ILQ ++ PFL  L   F+ +    +VMEY  GG++ +  +R     FSE  ARFYAA+++
Sbjct: 94  ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIV 151

Query: 444 LALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
           L  EYLH L ++YRDLKPEN+L+   G+I ++DF  + R 
Sbjct: 152 LTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV 191

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 3e-25
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
            A+    R+ +  GT E LAPEII  +G+  AVDWW  G+ ++E+  G  PF        
Sbjct: 187 FAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 246

Query: 618 LFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKR-GATEIKQHPFFEGVNWAL 676
              +V  ++RFP     S   +DL+R LL  +   R G  + G  +IK H +F   +W  
Sbjct: 247 YEKIVSGKVRFPSH--FSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIA 304

Query: 677 I--RCSTPPEVPRPMEAELPGKFGAVDPVGVSSSSSKK 712
           I  R    P +P+         F   +   +  S ++K
Sbjct: 305 IYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEK 342

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (344), Expect = 2e-36
 Identities = 63/341 (18%), Positives = 111/341 (32%), Gaps = 56/341 (16%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M  +  L+++G G  G+V+ ++   T    A+K +           + A  E  +L+ L 
Sbjct: 1   MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD-DEGVPSSALREICLLKELK 59

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           H  +  L+    +D+   LV E+C                      + +  ++L  L + 
Sbjct: 60  HKNIVRLHDVLHSDKKLTLVFEFCDQDLKKY--FDSCNGDLDPEIVKSFLFQLLKGLGFC 117

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFC 509
           H   V++RDLKP+N+L+  +G + L++F L+    +                        
Sbjct: 118 HSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIP----------------------- 154

Query: 510 VQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF 569
                +   S  +    + P       K  +     ++        EL      A    F
Sbjct: 155 -----VRCYSAEVVTLWYRPPDVLFGAKLYSTS--IDMWSAGCIFAELA----NAGRPLF 203

Query: 570 VGTHEY-LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
            G         I +  G  +   W +         Y   P   S                
Sbjct: 204 PGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTS--------------LV 249

Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
              P  +   RDL++ LL   P  R+     A E  QHP+F
Sbjct: 250 NVVPKLNATGRDLLQNLLKCNPVQRI----SAEEALQHPYF 286

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (344), Expect = 2e-36
 Identities = 65/357 (18%), Positives = 109/357 (30%), Gaps = 63/357 (17%)

Query: 335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE--ILQLLDHPF 392
            L  LG G   +VY +   +T    A+K +     +  K        RE  +LQ L HP 
Sbjct: 2   KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPN 61

Query: 393 LPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHML 452
           +  L   F       LV ++        ++        +    + Y    L  LEYLH  
Sbjct: 62  IIGLLDAFGHKSNISLVFDFMETDLEVIIKDN--SLVLTPSHIKAYMLMTLQGLEYLHQH 119

Query: 453 GVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQP 512
            +++RDLKP N+L+ ++G + L+DF                           G +     
Sbjct: 120 WILHRDLKPNNLLLDENGVLKLADF---------------------------GLAKSFGS 152

Query: 513 ACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT 572
                +   +      P +               +G     L EL+      R     G 
Sbjct: 153 PNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGC---ILAELL-----LRVPFLPGD 204

Query: 573 HEY-LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS 631
            +      I +  G  +   W         + +   P     +                 
Sbjct: 205 SDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHI---------------F 249

Query: 632 PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRP 688
            A      DLI+GL +  P  R+     AT+  +  +F          +   ++PRP
Sbjct: 250 SAAGDDLLDLIQGLFLFNPCARI----TATQALKMKYFSNRPGP----TPGCQLPRP 298

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 4e-36
 Identities = 60/345 (17%), Positives = 103/345 (29%), Gaps = 58/345 (16%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
             +  L  +G G  G V  +  +  +   A+K +       +    R   E +IL    H
Sbjct: 8   PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE--HQTYCQRTLREIKILLRFRH 65

Query: 391 PFLPTLYTHFETDRFS----CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
             +  +                ++ +  G DL+ L + Q   H S     ++  ++L  L
Sbjct: 66  ENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQ---HLSNDHICYFLYQILRGL 122

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGG 506
           +Y+H   V++RDLKP N+L+     + + DF L+               D D    G   
Sbjct: 123 KYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA------------RVADPDHDHTGFLT 170

Query: 507 SFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS 566
            +        P  +                         ++      L E++     +  
Sbjct: 171 EYVATRWYRAPEIMLNSKGYT---------------KSIDIWSVGCILAEML-----SNR 210

Query: 567 MSFVGTHEY-LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
             F G H       I+   G  S  D                P K       LF      
Sbjct: 211 PIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLF------ 264

Query: 626 LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
                 P     + DL+  +L   P  R+       +   HP+ E
Sbjct: 265 ------PNADSKALDLLDKMLTFNPHKRI----EVEQALAHPYLE 299

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 3e-35
 Identities = 65/153 (42%), Positives = 89/153 (58%), Gaps = 2/153 (1%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           + M+ F  LK LG G  G V L    +T  Y+AMK++ K  + ++ ++    TE  +LQ 
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN 61

Query: 388 LDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
             HPFL  L   F+T    C VMEY  GG+L     R+    F+E  ARFY AE++ ALE
Sbjct: 62  TRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRER--VFTEERARFYGAEIVSALE 119

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           YLH   VVYRD+K EN+++  DGHI ++DF L 
Sbjct: 120 YLHSRDVVYRDIKLENLMLDKDGHIKITDFGLC 152

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 1e-28
 Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 5/137 (3%)

Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
           A   +F GT EYLAPE+++   +G AVDWW  G+ ++E++ G+ PF    +      ++ 
Sbjct: 160 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILM 219

Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKR-GATEIKQHPFFEGVNWALI--RCS 680
           +++RFP +   S  ++ L+ GLL K+P+ RLG     A E+ +H FF  +NW  +  +  
Sbjct: 220 EEIRFPRT--LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKL 277

Query: 681 TPPEVPRPMEAELPGKF 697
            PP  P+         F
Sbjct: 278 LPPFKPQVTSEVDTRYF 294

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  132 bits (333), Expect = 4e-35
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 6/167 (3%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            + L + LG G +  V+L+         A+KV+            R + E +    L+HP
Sbjct: 8   RYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHP 67

Query: 392 FLPTLYTHFETD----RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
            +  +Y   E +        +VMEY  G  L  +   +     +   A    A+   AL 
Sbjct: 68  AIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALN 125

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
           + H  G+++RD+KP N+++     + + DF ++   A S   +  ++
Sbjct: 126 FSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTA 172

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 83.3 bits (205), Expect = 4e-18
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           ++ + +GT +YL+PE  +G+   +  D ++ G  L+E+L G+ PF G    +  +  V +
Sbjct: 170 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVRE 229

Query: 625 QLRFPDS--PATSYASRDLIRGLLVKEPQHR 653
               P +     S     ++   L K P++R
Sbjct: 230 DPIPPSARHEGLSADLDAVVLKALAKNPENR 260

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 5e-35
 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 6/164 (3%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
              +L++RLG G  G V++   +      A+K + + S++          E  +++ L H
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHT-KVAVKSLKQGSMSPD----AFLAEANLMKQLQH 67

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
             L  LY     +    ++ EY   G L    +   G   +       AA++   + ++ 
Sbjct: 68  QRLVRLYAVVTQEPI-YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE 126

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
               ++RDL+  N+LV D     ++DF L+     +    +  +
Sbjct: 127 ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGA 170

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 5e-13
 Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 6/118 (5%)

Query: 554 LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG 613
           L  L+ +             ++ APE I         D W+FGI L E++          
Sbjct: 155 LARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM 214

Query: 614 NRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ--HPFF 669
               +   + +  R             L+R    + P+ R         ++     FF
Sbjct: 215 TNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP----TFDYLRSVLEDFF 268

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  132 bits (333), Expect = 7e-35
 Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 7/152 (4%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            +     LG G    V L+E   T+   A+K + K +L  ++     + E  +L  + HP
Sbjct: 10  IYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEG--SMENEIAVLHKIKHP 67

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
            +  L   +E+     L+M+   GG+L      +    ++E  A     +VL A++YLH 
Sbjct: 68  NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEK--GFYTERDASRLIFQVLDAVKYLHD 125

Query: 452 LGVVYRDLKPENVLVR---DDGHIMLSDFDLS 480
           LG+V+RDLKPEN+L     +D  IM+SDF LS
Sbjct: 126 LGIVHRDLKPENLLYYSLDEDSKIMISDFGLS 157

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (251), Expect = 5e-24
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
              +  GT  Y+APE++  + +  AVD W+ G+  + LL G  PF    +      ++  
Sbjct: 165 VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKA 224

Query: 625 QLRF--PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
           +  F  P     S +++D IR L+ K+P+ R        +  QHP+  G   
Sbjct: 225 EYEFDSPYWDDISDSAKDFIRHLMEKDPEKRF----TCEQALQHPWIAGDTA 272

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 1e-34
 Identities = 54/363 (14%), Positives = 120/363 (33%), Gaps = 53/363 (14%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +  ++ LK +G G  G V  +  +      A+K + +    ++    RA  E  +++ ++
Sbjct: 16  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSR-PFQNQTHAKRAYRELVLMKCVN 74

Query: 390 HPFLPTLYTHFETDRFS------CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVL 443
           H  + +L   F   +         LVME         ++              +   ++L
Sbjct: 75  HKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ-----MELDHERMSYLLYQML 129

Query: 444 LALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRG 503
             +++LH  G+++RDLKP N++V+ D  + + DF L+             +  +      
Sbjct: 130 CGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA------------RTAGTSFMMTP 177

Query: 504 PGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA 563
              +   +                     P+       K   ++      + E+V     
Sbjct: 178 YVVTRYYRA--------------------PEVILGMGYKENVDIWSVGCIMGEMVRHKIL 217

Query: 564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
                ++        ++I+  G             +   +  +  + G      LF    
Sbjct: 218 FPGRDYIDQWN----KVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL-TFPKLFPDSL 272

Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPP 683
                  +   +  +RDL+  +LV +P  R+       +  QHP+           + PP
Sbjct: 273 FPADSEHNKLKASQARDLLSKMLVIDPAKRI----SVDDALQHPYINVWYDPAEVEAPPP 328

Query: 684 EVP 686
           ++ 
Sbjct: 329 QIY 331

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 1e-34
 Identities = 65/166 (39%), Positives = 103/166 (62%), Gaps = 7/166 (4%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSS---TRCYFAMKVMDKASLASRKKLT-RAQTERE 383
           +G+ +F LLK LG G  G V+L    S   T   +AMKV+ KA++  + K T   +TER+
Sbjct: 21  VGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQ 80

Query: 384 ILQLLDH-PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEV 442
           +L+ +   PFL TL+  F+T+    L+++Y  GG+L T   ++    F+E+  + Y  E+
Sbjct: 81  VLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEI 138

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT 488
           +LALE+LH LG++YRD+K EN+L+  +GH++L+DF LS       T
Sbjct: 139 VLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADET 184

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 6e-25
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 527 FIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKG--E 584
            I R    +N          L      L +        R+  F GT EY+AP+I++G   
Sbjct: 150 IIYRDIKLENILLDSNGHVVLTDFG--LSKEFVADETERAYDFCGTIEYMAPDIVRGGDS 207

Query: 585 GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF--PDSPATSYASRDLI 642
           GH  AVDWW+ G+ ++ELL G +PF   G + +   +  + L+   P     S  ++DLI
Sbjct: 208 GHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLI 267

Query: 643 RGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALIRCST--PPEVPR 687
           + LL+K+P+ RLG   R A EIK+H FF+ +NW  +       P  P 
Sbjct: 268 QRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPV 315

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 2e-34
 Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 6/150 (4%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
                LK LG G  G V   +        A+K++ + S++          E +++  L H
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSED----EFIEEAKVMMNLSH 58

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
             L  LY      R   ++ EY   G L    +    + F          +V  A+EYL 
Sbjct: 59  EKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLE 117

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
               ++RDL   N LV D G + +SDF LS
Sbjct: 118 SKQFLHRDLAARNCLVNDQGVVKVSDFGLS 147

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (175), Expect = 2e-14
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 554 LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGS 612
           L   V +     S+       +  PE++      S  D W FG+ + E+   GK P++  
Sbjct: 146 LSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF 205

Query: 613 GNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH 666
            N  T  ++  Q LR       S     ++     ++   R         +  +
Sbjct: 206 TNSETAEHIA-QGLRLYRPHLASEKVYTIMYSCWHEKADERP----TFKILLSN 254

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 3e-34
 Identities = 63/363 (17%), Positives = 111/363 (30%), Gaps = 70/363 (19%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPF 392
           +   K +G G  G VY ++L  +    A+K +        +       E +I++ LDH  
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-------LQDKRFKNRELQIMRKLDHCN 74

Query: 393 LPTLYTHFET------DRFSCLVMEYCPGGDLHTLRQR-QPGKHFSEYAARFYAAEVLLA 445
           +  L   F +      + +  LV++Y P       R   +  +       + Y  ++  +
Sbjct: 75  IVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRS 134

Query: 446 LEYLHMLGVVYRDLKPENVLVRDDGHIM-LSDFDLSLRCAVSPTLIKTSSLDSDPSRRGP 504
           L Y+H  G+ +RD+KP+N+L+  D  ++ L DF  + +                  R  P
Sbjct: 135 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL----------------VRGEP 178

Query: 505 GGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA 564
             S+        P  +                         ++      L EL+      
Sbjct: 179 NVSYICSRYYRAPELIF---------------GATDYTSSIDVWSAGCVLAELL-----L 218

Query: 565 RSMSFVGTHEY-LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
               F G        EIIK  G  +                       +        +  
Sbjct: 219 GQPIFPGDSGVDQLVEIIKVLGTPTREQIRE--------------MNPNYTEFKFPQIKA 264

Query: 624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPP 683
                   P T   +  L   LL   P  RL       E   H FF+ +    ++     
Sbjct: 265 HPWTKVFRPRTPPEAIALCSRLLEYTPTARL----TPLEACAHSFFDELRDPNVKLPNGR 320

Query: 684 EVP 686
           + P
Sbjct: 321 DTP 323

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (328), Expect = 3e-34
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 6/164 (3%)

Query: 320 AIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSST---RCYFAMKVMDKASLASRKKLT 376
           A+R     + +S  ++ + +G G+ G V    L        + A+K +      + K+  
Sbjct: 15  AVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSG--YTEKQRR 72

Query: 377 RAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAAR 436
              +E  I+   DHP +  L           ++ E+   G L +  ++  G+  +     
Sbjct: 73  DFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQF-TVIQLV 131

Query: 437 FYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                +   ++YL  +  V+RDL   N+LV  +    +SDF LS
Sbjct: 132 GMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLS 175

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (173), Expect = 5e-14
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL- 603
           S+ GL S  L +  ++PT   ++       + APE I+     SA D W++GI + E++ 
Sbjct: 170 SDFGL-SRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS 228

Query: 604 YGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLG---VKRGA 660
           YG+ P+        + N + Q  R P       A   L+     K+  HR     +    
Sbjct: 229 YGERPYWDM-TNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTL 287

Query: 661 TEIKQHP 667
            ++ ++P
Sbjct: 288 DKMIRNP 294

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 5e-34
 Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 7/151 (4%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            + + + LG G+ G V+    +S++  +  K +              + E  IL +  H 
Sbjct: 6   KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKV----KGTDQVLVKKEISILNIARHR 61

Query: 392 FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM 451
            +  L+  FE+     ++ E+  G D+            +E     Y  +V  AL++LH 
Sbjct: 62  NILHLHESFESMEELVMIFEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHS 120

Query: 452 LGVVYRDLKPENVLV--RDDGHIMLSDFDLS 480
             + + D++PEN++   R    I + +F  +
Sbjct: 121 HNIGHFDIRPENIIYQTRRSSTIKIIEFGQA 151

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (233), Expect = 1e-21
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
                    EY APE+ + +   +A D W+ G  ++ LL G  PF    N+  + N++  
Sbjct: 159 NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNA 218

Query: 625 QLRFPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF----EGVNWALIR 678
           +  F +      S  + D +  LLVKE + R+     A+E  QHP+     E V+  +IR
Sbjct: 219 EYTFDEEAFKEISIEAMDFVDRLLVKERKSRM----TASEALQHPWLKQKIERVSTKVIR 274

Query: 679 CSTPPEVPRPM 689
                     +
Sbjct: 275 TLKHRRYYHTL 285

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  129 bits (325), Expect = 5e-34
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 4/150 (2%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           +   +  +LG G  G VY           A+K + +       ++     E  +++ + H
Sbjct: 17  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE----DTMEVEEFLKEAAVMKEIKH 72

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
           P L  L      +    ++ E+   G+L    +    +  S     + A ++  A+EYL 
Sbjct: 73  PNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 132

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
               ++RDL   N LV ++  + ++DF LS
Sbjct: 133 KKNFIHRDLAARNCLVGENHLVKVADFGLS 162

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (148), Expect = 8e-11
 Identities = 16/98 (16%), Positives = 31/98 (31%)

Query: 556 ELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR 615
            L+   T           ++ APE +         D W FG+ L E+           + 
Sbjct: 163 RLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL 222

Query: 616 ATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
           + ++ ++ +  R            +L+R      P  R
Sbjct: 223 SQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDR 260

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 8e-34
 Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 5/157 (3%)

Query: 327 ILGMSHFRLLKRLGCGDIGSVYLSEL---SSTRCYFAMKVMDKASLASRKKLTRAQTERE 383
           ++G    RLL++LG G  G V   E    S      A+K +    L+  + +     E  
Sbjct: 4   LIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVN 63

Query: 384 ILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVL 443
            +  LDH  L  LY    T     +V E  P G L    ++  G HF       YA +V 
Sbjct: 64  AMHSLDHRNLIRLYGVVLTPPM-KMVTELAPLGSLLDRLRKHQG-HFLLGTLSRYAVQVA 121

Query: 444 LALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             + YL     ++RDL   N+L+     + + DF L 
Sbjct: 122 EGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM 158

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 1e-15
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 1/95 (1%)

Query: 560 EPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATL 618
           +              + APE +K      A D W FG+ L E+  YG+ P+ G      L
Sbjct: 165 DDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQIL 224

Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
             +  +  R P          +++      +P+ R
Sbjct: 225 HKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDR 259

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 8e-34
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 17/160 (10%)

Query: 330 MSHFRLLKR-LGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL-QL 387
           +  +++  + LG G  G V       T+  FA+K++            +A+ E E+  + 
Sbjct: 10  IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCP--------KARREVELHWRA 61

Query: 388 LDHPFLPTLYTHFET----DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVL 443
              P +  +   +E      +   +VME   GG+L +  Q +  + F+E  A      + 
Sbjct: 62  SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIG 121

Query: 444 LALEYLHMLGVVYRDLKPENVLV---RDDGHIMLSDFDLS 480
            A++YLH + + +RD+KPEN+L    R +  + L+DF  +
Sbjct: 122 EAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA 161

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 1e-18
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 17/128 (13%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
              +   T  Y+APE++  E +  + D W+ G+ ++ LL G  PF  +   A    +  +
Sbjct: 169 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTR 228

Query: 625 ------QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIR 678
                 +   P+    S   + LIR LL  EP  R+      TE   HP+        ++
Sbjct: 229 IRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRM----TITEFMNHPWI-------MQ 277

Query: 679 CSTPPEVP 686
            +  P+ P
Sbjct: 278 STKVPQTP 285

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (326), Expect = 9e-34
 Identities = 64/348 (18%), Positives = 108/348 (31%), Gaps = 56/348 (16%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           +S +  L ++G G  G V+ +    T    A+K +   +         A  E +ILQLL 
Sbjct: 9   VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENE-KEGFPITALREIKILQLLK 67

Query: 390 HPFLPTLYTHFETDRFS--------CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAE 441
           H  +  L     T             LV ++C       L         SE   +     
Sbjct: 68  HENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSE--IKRVMQM 125

Query: 442 VLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSR 501
           +L  L Y+H   +++RD+K  NVL+  DG + L+DF L+            +        
Sbjct: 126 LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLA-------RAFSLAKNSQPNRY 178

Query: 502 RGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP 561
                +   +P  +        P   +                            ++AE 
Sbjct: 179 TNRVVTLWYRPPELLLGERDYGPPIDLW-----------------------GAGCIMAEM 215

Query: 562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
                +    T ++    I +  G  +   W       +  LY K        R     +
Sbjct: 216 WTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVD---NYELYEKLELVKGQKRKVKDRL 272

Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFF 669
                    +      + DLI  LLV +P  R+     + +   H FF
Sbjct: 273 --------KAYVRDPYALDLIDKLLVLDPAQRI----DSDDALNHDFF 308

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 1e-33
 Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 14/164 (8%)

Query: 328 LGMSH----FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTERE 383
           +GMS+     +    +G G   +VY    + T    A   +    L ++ +  R + E E
Sbjct: 2   VGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL-TKSERQRFKEEAE 60

Query: 384 ILQLLDHPFLPTLYTHFET----DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYA 439
           +L+ L HP +   Y  +E+     +   LV E    G L T  +R   K       R + 
Sbjct: 61  MLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKR--FKVMKIKVLRSWC 118

Query: 440 AEVLLALEYLHMLG--VVYRDLKPENVLVRD-DGHIMLSDFDLS 480
            ++L  L++LH     +++RDLK +N+ +    G + + D  L+
Sbjct: 119 RQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLA 162

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.8 bits (243), Expect = 3e-23
 Identities = 21/107 (19%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
            + + +GT E++APE+ +   +  +VD + FG+ + E+   + P+    N A ++  V  
Sbjct: 169 FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTS 227

Query: 625 QLRFPDSPATSYAS-RDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
            ++       +    +++I G + +    R        ++  H FF+
Sbjct: 228 GVKPASFDKVAIPEVKEIIEGCIRQNKDERY----SIKDLLNHAFFQ 270

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 1e-33
 Identities = 71/345 (20%), Positives = 114/345 (33%), Gaps = 56/345 (16%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M +F+ ++++G G  G VY +    T    A+K +   +  +    + A  E  +L+ L+
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELN 59

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           HP +  L     T+    LV E+    DL                 + Y  ++L  L + 
Sbjct: 60  HPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFC 509
           H   V++RDLKP+N+L+  +G I L+DF L+    V                        
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR--------------------- 157

Query: 510 VQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF 569
                   +   +      P I        T      LG       E+V      R   F
Sbjct: 158 ------TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGC---IFAEMV-----TRRALF 203

Query: 570 VGTHEY-LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRF 628
            G  E      I +  G    V W   G+          P     + + +          
Sbjct: 204 PGDSEIDQLFRIFRTLGTPDEVVWP--GVTSMPDYKPSFPKWARQDFSKVV--------- 252

Query: 629 PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN 673
              P      R L+  +L  +P  R+     A     HPFF+ V 
Sbjct: 253 ---PPLDEDGRSLLSQMLHYDPNKRI----SAKAALAHPFFQDVT 290

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 1e-33
 Identities = 65/364 (17%), Positives = 121/364 (33%), Gaps = 68/364 (18%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
           + +R L+ +G G  G+V  +    T    A+K + +    S     RA  E  +L+ + H
Sbjct: 18  AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYR-PFQSELFAKRAYRELRLLKHMRH 76

Query: 391 PFLPTLYTHFETDRFS------CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 444
             +  L   F  D          LVM +        ++     +   E   +F   ++L 
Sbjct: 77  ENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKH----EKLGEDRIQFLVYQMLK 132

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGP 504
            L Y+H  G+++RDLKP N+ V +D  + + DF L+                        
Sbjct: 133 GLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLA------------------------ 168

Query: 505 GGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA 564
                 + A  E +   +      P +     +         +G        ++AE    
Sbjct: 169 ------RQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGC-------IMAEMITG 215

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
           +++     H     EI+K  G   A           +      P     + A++      
Sbjct: 216 KTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASP 275

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPE 684
                          +L+  +LV + + R+     A E   HP+FE ++         P+
Sbjct: 276 LA------------VNLLEKMLVLDAEQRV----TAGEALAHPYFESLHDT----EDEPQ 315

Query: 685 VPRP 688
           V + 
Sbjct: 316 VQKY 319

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 1e-33
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 6/144 (4%)

Query: 339 LGCGDIGSVYLSELSSTR--CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTL 396
           LGCG+ GSV        +     A+KV+ + +   +        E +I+  LD+P++  L
Sbjct: 17  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRL 74

Query: 397 YTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVY 456
               + +    LVME   GG LH        +            +V + ++YL     V+
Sbjct: 75  IGVCQAEAL-MLVMEMAGGGPLHKFL-VGKREEIPVSNVAELLHQVSMGMKYLEEKNFVH 132

Query: 457 RDLKPENVLVRDDGHIMLSDFDLS 480
           RDL   NVL+ +  +  +SDF LS
Sbjct: 133 RDLAARNVLLVNRHYAKISDFGLS 156

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 1e-13
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 3/112 (2%)

Query: 560 EPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATL 618
           +       +     ++ APE I      S  D W++G+ + E L YG+ P+K       +
Sbjct: 163 DSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM-KGPEV 221

Query: 619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFE 670
              + Q  R    P        L+    + + + R        +  +  ++ 
Sbjct: 222 MAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLT-VEQRMRACYYS 272

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (321), Expect = 1e-33
 Identities = 39/151 (25%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL 387
           L M   +LL+ +G G+ G V L +    +   A+K +                E  ++  
Sbjct: 4   LNMKELKLLQTIGKGEFGDVMLGDYRGNK--VAVKCIKN-----DATAQAFLAEASVMTQ 56

Query: 388 LDHPFLPTLYTHF-ETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
           L H  L  L     E      +V EY   G L    + +            ++ +V  A+
Sbjct: 57  LRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAM 116

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDF 477
           EYL     V+RDL   NVLV +D    +SDF
Sbjct: 117 EYLEGNNFVHRDLAARNVLVSEDNVAKVSDF 147

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (174), Expect = 3e-14
 Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 3/105 (2%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
              +     ++ APE ++ +   +  D W+FGI L E+               +   V +
Sbjct: 156 TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEK 215

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLG---VKRGATEIKQH 666
             +         A  ++++     +   R     ++     IK H
Sbjct: 216 GYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH 260

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 2e-32
 Identities = 61/353 (17%), Positives = 110/353 (31%), Gaps = 69/353 (19%)

Query: 332 HFRLLKRLGCGDIGSVYL-SELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-- 388
            +  +  +G G  G V+   +L +   + A+K +   +            E  +L+ L  
Sbjct: 8   QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQT-GEEGMPLSTIREVAVLRHLET 66

Query: 389 -DHPFLPTLYTHFETDRFS-----CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEV 442
            +HP +  L+      R        LV E+           + P         +    ++
Sbjct: 67  FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTT-YLDKVPEPGVPTETIKDMMFQL 125

Query: 443 LLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRR 502
           L  L++LH   VV+RDLKP+N+LV   G I L+DF L+                      
Sbjct: 126 LRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA---------------------- 163

Query: 503 GPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT 562
                  +    +  +SV +      P +      + +     +L        E+     
Sbjct: 164 ------RIYSFQMALTSVVVTLWYRAPEVL----LQSSYATPVDLWSVGCIFAEMF---- 209

Query: 563 AARSMSFVGTHEY-LAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNV 621
             R   F G+ +     +I+   G     DW        +  + K+              
Sbjct: 210 -RRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSA------------- 255

Query: 622 VGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
              Q             +DL+   L   P  R+     A     HP+F+ +  
Sbjct: 256 ---QPIEKFVTDIDELGKDLLLKCLTFNPAKRI----SAYSALSHPYFQDLER 301

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 4e-32
 Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 6/153 (3%)

Query: 327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ 386
           ++  S    ++ +G G  G V+L    +     A+K + + +++          E E++ 
Sbjct: 1   VIDPSELTFVQEIGSGQFGLVHLGYWLNKD-KVAIKTIREGAMSEE----DFIEEAEVMM 55

Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
            L HP L  LY         CLV E+   G L    + Q    F+         +V   +
Sbjct: 56  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGM 114

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDL 479
            YL    V++RDL   N LV ++  I +SDF +
Sbjct: 115 AYLEEACVIHRDLAARNCLVGENQVIKVSDFGM 147

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 2e-15
 Identities = 14/113 (12%), Positives = 37/113 (32%), Gaps = 4/113 (3%)

Query: 554 LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG 613
           +   V +     S       ++ +PE+     + S  D W+FG+ + E+         + 
Sbjct: 147 MTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR 206

Query: 614 NRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH 666
           + + +   +    R       S     ++     + P+ R       + + + 
Sbjct: 207 SNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRP----AFSRLLRQ 255

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 8e-32
 Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 6/163 (3%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH 390
              RL  +LG G  G V++   + T    A+K +   +++          E ++++ L H
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTT-RVAIKTLKPGTMSPE----AFLQEAQVMKKLRH 71

Query: 391 PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
             L  LY     +    +V EY   G L    + + GK+         AA++   + Y+ 
Sbjct: 72  EKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE 130

Query: 451 MLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTS 493
            +  V+RDL+  N+LV ++    ++DF L+     +    +  
Sbjct: 131 RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG 173

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 3e-15
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 6/118 (5%)

Query: 554 LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG 613
           L  L+ +             ++ APE           D W+FGI L EL           
Sbjct: 159 LARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM 218

Query: 614 NRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ--HPFF 669
               + + V +  R P  P    +  DL+     KEP+ R         ++     +F
Sbjct: 219 VNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERP----TFEYLQAFLEDYF 272

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 1e-31
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 6/160 (3%)

Query: 337 KRLGCGDIGSVYLSEL--SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLP 394
           K LG G+ G+V              A+K++   +            E  ++Q LD+P++ 
Sbjct: 13  KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN-DPALKDELLAEANVMQQLDNPYIV 71

Query: 395 TLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGV 454
            +    E + +  LVME    G L+   Q+   +H  +        +V + ++YL     
Sbjct: 72  RMIGICEAESW-MLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEESNF 128

Query: 455 VYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
           V+RDL   NVL+    +  +SDF LS          K  +
Sbjct: 129 VHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 168

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 2e-17
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 3/110 (2%)

Query: 566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLFNVVGQ 624
                   ++ APE I      S  D W+FG+ + E   YG+ P++G    + +  ++ +
Sbjct: 167 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM-KGSEVTAMLEK 225

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW 674
             R            DL+      + ++R G         ++ +++ VN 
Sbjct: 226 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAA-VELRLRNYYYDVVNE 274

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 1e-31
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 24/185 (12%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREIL 385
           +     K LG G  G V  +       S      A+K++  ++  + ++     +E ++L
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTERE--ALMSELKVL 80

Query: 386 -QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKH--------------- 429
             L +H  +  L         + ++ EYC  GDL    +R+                   
Sbjct: 81  SYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDEL 140

Query: 430 -FSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT 488
                    ++ +V   + +L     ++RDL   N+L+       + DF L+        
Sbjct: 141 ALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSN 200

Query: 489 LIKTS 493
            +   
Sbjct: 201 YVVKG 205

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 8e-10
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 1/99 (1%)

Query: 556 ELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGN 614
           ++  +       +     +++APE I    +    D W++GIFL EL   G +P+ G   
Sbjct: 194 DIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV 253

Query: 615 RATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
            +  + ++ +  R            D+++     +P  R
Sbjct: 254 DSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKR 292

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 3e-31
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKK---LTRAQTEREILQLL 388
           ++   + LG G    V      ST   +A K + K    S ++       + E  IL+ +
Sbjct: 11  YYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI 70

Query: 389 DHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEY 448
            HP + TL+  +E      L++E   GG+L      +  +  +E  A  +  ++L  + Y
Sbjct: 71  QHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYY 128

Query: 449 LHMLGVVYRDLKPENVLVRDDG----HIMLSDFDLSLRC 483
           LH L + + DLKPEN+++ D       I + DF L+ + 
Sbjct: 129 LHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI 167

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 1e-27
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 8/124 (6%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
              +  GT E++APEI+  E  G   D W+ G+  + LL G +PF G   + TL NV   
Sbjct: 172 EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAV 231

Query: 625 QLRFPDS--PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW--ALIRCS 680
              F D     TS  ++D IR LLVK+P+ R+       +  QHP+ +  +   AL    
Sbjct: 232 NYEFEDEYFSNTSALAKDFIRRLLVKDPKKRM----TIQDSLQHPWIKPKDTQQALSSAW 287

Query: 681 TPPE 684
           + P+
Sbjct: 288 SHPQ 291

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 6e-31
 Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 29/177 (16%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTR-----CYFAMKVMDKASLASRKKLTRAQTEREIL 385
            +    K LG G  G V  +              A+K++ + + +S ++     +E +++
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSERE--ALMSELKMM 94

Query: 386 -QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKH--------------- 429
            QL  H  +  L           L+ EYC  GDL    + +  K                
Sbjct: 95  TQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEE 154

Query: 430 ------FSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                  +      +A +V   +E+L     V+RDL   NVLV     + + DF L+
Sbjct: 155 EEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLA 211

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 1e-13
 Identities = 14/112 (12%), Positives = 40/112 (35%), Gaps = 5/112 (4%)

Query: 556 ELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGN 614
           +++++       +     +++APE +    +    D W++GI L E+   G  P+ G   
Sbjct: 213 DIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV 272

Query: 615 RATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH 666
            A  + ++    +       +     +++     + + R         +   
Sbjct: 273 DANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRP----SFPNLTSF 320

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 8e-31
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 7/156 (4%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKL---TRAQTEREILQL 387
           S +++   LG G  GSVY     S     A+K ++K  ++   +L   TR   E  +L+ 
Sbjct: 4   SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKK 63

Query: 388 LD--HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLA 445
           +      +  L   FE      L++E             + G    E  AR +  +VL A
Sbjct: 64  VSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGA-LQEELARSFFWQVLEA 122

Query: 446 LEYLHMLGVVYRDLKPENVLV-RDDGHIMLSDFDLS 480
           + + H  GV++RD+K EN+L+  + G + L DF   
Sbjct: 123 VRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSG 158

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 9e-20
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 13/107 (12%)

Query: 567 MSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
             F GT  Y  PE I+    HG +   W+ GI L++++ G  PF+          ++  Q
Sbjct: 167 TDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQ 220

Query: 626 LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV 672
           + F      S   + LIR  L   P  R        EI+ HP+ + V
Sbjct: 221 VFFRQR--VSSECQHLIRWCLALRPSDRP----TFEEIQNHPWMQDV 261

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 1e-30
 Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 3/151 (1%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSST-RCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
               L + +G G  G V+     S      A+ +    +  S     +   E   ++  D
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           HP +  L     T+    ++ME C  G+L +  Q +        +   YA ++  AL YL
Sbjct: 67  HPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQVRKYS-LDLASLILYAYQLSTALAYL 124

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                V+RD+   NVLV  +  + L DF LS
Sbjct: 125 ESKRFVHRDIAARNVLVSSNDCVKLGDFGLS 155

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 3e-13
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 554 LPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSG 613
           L   + + T  ++       +++APE I      SA D W FG+ + E+L          
Sbjct: 154 LSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV 213

Query: 614 NRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH 666
               +   +    R P  P        L+      +P  R       TE+K  
Sbjct: 214 KNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRP----RFTELKAQ 262

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score =  118 bits (297), Expect = 2e-30
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 4/151 (2%)

Query: 330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD 389
           M  +  L+++G G  G VY ++ +    + A+K +           +    E  IL+ L 
Sbjct: 1   MEKYHGLEKIGEGTYGVVYKAQNNYGETF-ALKKIRLEKE-DEGIPSTTIREISILKELK 58

Query: 390 HPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYL 449
           H  +  LY    T +   LV E+        L   +         A+ +  ++L  + Y 
Sbjct: 59  HSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYC 116

Query: 450 HMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           H   V++RDLKP+N+L+  +G + ++DF L+
Sbjct: 117 HDRRVLHRDLKPQNLLINREGELKIADFGLA 147

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 69.5 bits (169), Expect = 2e-13
 Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 32/134 (23%)

Query: 565 RSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG 623
           +    + T  Y AP+++ G   + + +D W+ G    E++ G   F G      L  +  
Sbjct: 156 KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFR 215

Query: 624 QQLRFPDS---------------------------PATSYASRDLIRGLLVKEPQHRLGV 656
                                                   +  DL+  +L  +P  R+  
Sbjct: 216 ILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRI-- 273

Query: 657 KRGATEIKQHPFFE 670
              A +  +H +F+
Sbjct: 274 --TAKQALEHAYFK 285

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 3e-30
 Identities = 61/368 (16%), Positives = 114/368 (30%), Gaps = 62/368 (16%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            ++ L  +G G  GSV  +  + T    A+K + +    S     R   E  +L+ + H 
Sbjct: 19  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-PFQSIIHAKRTYRELRLLKHMKHE 77

Query: 392 FLPTLYTHFETDRF-----SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
            +  L   F   R         ++ +  G DL+ + + Q     ++   +F   ++L  L
Sbjct: 78  NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIYQILRGL 134

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGG 506
           +Y+H   +++RDLKP N+ V +D  + + DF L+                          
Sbjct: 135 KYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-------------------------- 168

Query: 507 SFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS 566
               +    E +          P I               +G        ++AE    R+
Sbjct: 169 ----RHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC-------IMAELLTGRT 217

Query: 567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL 626
           +     H      I++  G   A                        N A +F       
Sbjct: 218 LFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVF------- 270

Query: 627 RFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVP 686
                   +  + DL+  +LV +   R+     A +   H +F   +         P   
Sbjct: 271 -----IGANPLAVDLLEKMLVLDSDKRI----TAAQALAHAYFAQYHDPDDEPVADPYDQ 321

Query: 687 RPMEAELP 694
                +L 
Sbjct: 322 SFESRDLL 329

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 7e-30
 Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 15/169 (8%)

Query: 327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREIL- 385
           +L  +  +    +G G+ G V  + +          +      AS+        E E+L 
Sbjct: 6   VLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLC 65

Query: 386 QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQR--------------QPGKHFS 431
           +L  HP +  L    E   +  L +EY P G+L    ++                    S
Sbjct: 66  KLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLS 125

Query: 432 EYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
                 +AA+V   ++YL     ++RDL   N+LV ++    ++DF LS
Sbjct: 126 SQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLS 174

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 4e-13
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 4/106 (3%)

Query: 561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN 620
               +         ++A E +    + +  D W++G+ L E++            A L+ 
Sbjct: 178 EVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYE 237

Query: 621 VVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH 666
            + Q  R            DL+R    ++P  R        +I   
Sbjct: 238 KLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERP----SFAQILVS 279

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (295), Expect = 9e-30
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 4/170 (2%)

Query: 327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKA--SLASRKKLTRAQTEREI 384
           IL  + F+ +K LG G  G+VY            + V  K      S K       E  +
Sbjct: 5   ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYV 64

Query: 385 LQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLL 444
           +  +D+P +  L     T     L+ +  P G L    +     +        +  ++  
Sbjct: 65  MASVDNPHVCRLLGICLTSTV-QLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAK 122

Query: 445 ALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
            + YL    +V+RDL   NVLV+   H+ ++DF L+              
Sbjct: 123 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEG 172

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 6e-12
 Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 2/98 (2%)

Query: 557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNR 615
           L AE     +       +++A E I    +    D W++G+ + EL+ +G  P+ G    
Sbjct: 161 LGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI-PA 219

Query: 616 ATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
           + + +++ +  R P  P  +     ++    + +   R
Sbjct: 220 SEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSR 257

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  116 bits (292), Expect = 2e-29
 Identities = 35/191 (18%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREIL 385
           ++   ++ +G G  G V+ +              A+K++ + +  S       Q E  ++
Sbjct: 13  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALM 70

Query: 386 QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQ-------------------- 425
              D+P +  L       +  CL+ EY   GDL+   +                      
Sbjct: 71  AEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVS 130

Query: 426 --PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC 483
                  S       A +V   + YL     V+RDL   N LV ++  + ++DF LS   
Sbjct: 131 SPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNI 190

Query: 484 AVSPTLIKTSS 494
             +       +
Sbjct: 191 YSADYYKADGN 201

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.9 bits (152), Expect = 3e-11
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNRATLFNVV- 622
              +      ++ PE I    + +  D W +G+ L E+  YG  P+ G  +   ++ V  
Sbjct: 198 ADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRD 257

Query: 623 GQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
           G  L  P++        +L+R    K P  R
Sbjct: 258 GNILACPEN--CPLELYNLMRLCWSKLPADR 286

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  115 bits (288), Expect = 5e-29
 Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 14/160 (8%)

Query: 327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ 386
           ++G  H+++ +R+G G  G ++           A+K   +     R    + + E    +
Sbjct: 2   VVG-VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPR-----RSDAPQLRDEYRTYK 55

Query: 387 LLDH-PFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLA 445
           LL     +P +Y   +    + LV++         L     G+ FS       A ++L  
Sbjct: 56  LLAGCTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLC--GRKFSVKTVAMAAKQMLAR 113

Query: 446 LEYLHMLGVVYRDLKPENVLVRD-----DGHIMLSDFDLS 480
           ++ +H   +VYRD+KP+N L+          I + DF + 
Sbjct: 114 VQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMV 153

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 60.6 bits (146), Expect = 1e-10
 Identities = 11/95 (11%), Positives = 20/95 (21%), Gaps = 6/95 (6%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
              +  GT  Y++     G       D    G      L G  P++G             
Sbjct: 169 EKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERI 228

Query: 625 QLRFPDSPATSYAS------RDLIRGLLVKEPQHR 653
             +   +P     +         +           
Sbjct: 229 GEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDAT 263

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  114 bits (285), Expect = 1e-28
 Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 11/153 (7%)

Query: 332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHP 391
            +RL +++G G  G +YL    +     A+K+        + K  +   E +I +++   
Sbjct: 8   RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECV-----KTKHPQLHIESKIYKMMQGG 62

Query: 392 -FLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLH 450
             +PT+        ++ +VME                + FS       A +++  +EY+H
Sbjct: 63  VGIPTIRWCGAEGDYNVMVMELLGPSLED--LFNFCSRKFSLKTVLLLADQMISRIEYIH 120

Query: 451 MLGVVYRDLKPENVLVRDDGH---IMLSDFDLS 480
               ++RD+KP+N L+        + + DF L+
Sbjct: 121 SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLA 153

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.7 bits (167), Expect = 3e-13
 Identities = 13/117 (11%), Positives = 31/117 (26%), Gaps = 8/117 (6%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVV-- 622
            + +  GT  Y +     G       D  + G  L     G  P++G             
Sbjct: 169 ENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERI 228

Query: 623 -GQQLRFPDSPATSYAS---RDLIRGLLVKEPQHRLGVKRGATEIKQHPFF-EGVNW 674
             +++  P               +          +        ++ ++ F  +G ++
Sbjct: 229 SEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSY-LRQLFRNLFHRQGFSY 284

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 9e-28
 Identities = 48/203 (23%), Positives = 74/203 (36%), Gaps = 35/203 (17%)

Query: 312 DPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSSTR-------CYFAMKVM 364
           DPRW+           L      L K LG G  G V L+E               A+K++
Sbjct: 5   DPRWE-----------LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKML 53

Query: 365 DKASLASRKKLTRAQTEREIL-QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTL-- 421
                A+ K L+   +E E++  +  H  +  L      D    +++EY   G+L     
Sbjct: 54  KSD--ATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 111

Query: 422 ------------RQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD 469
                           P +  S       A +V   +EYL     ++RDL   NVLV +D
Sbjct: 112 ARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTED 171

Query: 470 GHIMLSDFDLSLRCAVSPTLIKT 492
             + ++DF L+          KT
Sbjct: 172 NVMKIADFGLARDIHHIDYYKKT 194

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 1e-12
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELL-YGKTPFKGSGNR 615
           +       ++ +     +++APE +    +    D W+FG+ L E+   G +P+ G    
Sbjct: 185 IHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV-PV 243

Query: 616 ATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR 653
             LF ++ +  R       +     ++R      P  R
Sbjct: 244 EELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQR 281

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 7e-27
 Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 7/168 (4%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSST----RCYFAMKVMDKASLASRKKLTRAQTEREILQ 386
           S     K +G G+ G VY   L ++        A+K +      + K+      E  I+ 
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMG 64

Query: 387 LLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
              H  +  L       +   ++ EY   G L    + + G  FS          +   +
Sbjct: 65  QFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDG-EFSVLQLVGMLRGIAAGM 123

Query: 447 EYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
           +YL  +  V+RDL   N+LV  +    +SDF LS      P    T+S
Sbjct: 124 KYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTS 171

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 6e-13
 Identities = 18/88 (20%), Positives = 29/88 (32%)

Query: 566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ 625
           +        + APE I      SA D W+FGI + E++          +   +   +   
Sbjct: 170 TSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDG 229

Query: 626 LRFPDSPATSYASRDLIRGLLVKEPQHR 653
            R P       A   L+     +E   R
Sbjct: 230 FRLPTPMDCPSAIYQLMMQCWQQERARR 257

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 1e-26
 Identities = 33/185 (17%), Positives = 71/185 (38%), Gaps = 23/185 (12%)

Query: 331 SHFRLLKRLGCGDIGSVYLSEL-----SSTRCYFAMKVMDKASLASRKKLTRAQTEREIL 385
              +L K LG G  G V  ++      ++T    A+K++ + +  S  +     +E +IL
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHR--ALMSELKIL 70

Query: 386 QLLDHPFLPTLYTH--FETDRFSCLVMEYCPGGDLHTLRQRQPGK--------------H 429
             + H            +      +++E+C  G+L T  + +  +               
Sbjct: 71  IHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDF 130

Query: 430 FSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL 489
            +      Y+ +V   +E+L     ++RDL   N+L+ +   + + DF L+      P  
Sbjct: 131 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 190

Query: 490 IKTSS 494
           ++   
Sbjct: 191 VRKGD 195

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 7e-11
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 5/111 (4%)

Query: 557 LVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYG-KTPFKGSGNR 615
           +  +P   R        +++APE I    +    D W+FG+ L E+     +P+ G    
Sbjct: 184 IYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID 243

Query: 616 ATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH 666
                 + +  R      T+      +      EP  R       +E+ +H
Sbjct: 244 EEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRP----TFSELVEH 290

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 2e-26
 Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 19/229 (8%)

Query: 331 SHFRLLKRLGCGDIGSVYLSELSSTR-----CYFAMKVMDKASLASRKKLTRAQTEREIL 385
               + + LG G  G VY                A+K +++A  AS ++      E  ++
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA--ASMRERIEFLNEASVM 77

Query: 386 QLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKH--------FSEYAARF 437
           +  +   +  L       + + ++ME    GDL +  +               S      
Sbjct: 78  KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQ 137

Query: 438 YAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDS 497
            A E+   + YL+    V+RDL   N +V +D  + + DF ++     +    K      
Sbjct: 138 MAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLL 197

Query: 498 DPSRRGP----GGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRK 542
                 P     G F           V  + A    + +   + ++  +
Sbjct: 198 PVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLR 246

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 2e-11
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 2/120 (1%)

Query: 556 ELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNR 615
           ++       +    +    +++PE +K     +  D W+FG+ L E+           + 
Sbjct: 182 DIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN 241

Query: 616 ATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ--HPFFEGVN 673
             +   V +               +L+R      P+ R       + IK+   P F  V+
Sbjct: 242 EQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVS 301

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 8e-26
 Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 25/176 (14%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQL--LDH 390
             L + +G G  G V+  +        A+K+         ++      E EI Q   L H
Sbjct: 5   IVLQESIGKGRFGEVWRGKWRGEE--VAVKIFSS------REERSWFREAEIYQTVMLRH 56

Query: 391 PFLPTLYTHFETDRFS----CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLAL 446
             +         D  +     LV +Y   G L     R      +       A      L
Sbjct: 57  ENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT---VTVEGMIKLALSTASGL 113

Query: 447 EYLHM--------LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS 494
            +LHM          + +RDLK +N+LV+ +G   ++D  L++R   +   I  + 
Sbjct: 114 AHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAP 169

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 26/121 (21%)

Query: 560 EPTAARSMSFVGTHEYLAPEIIKGEGH------GSAVDWWTFGIFLHELLYGKTPFKGSG 613
           +         VGT  Y+APE++    +          D +  G+   E+    +      
Sbjct: 163 DTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHE 222

Query: 614 --------------NRATLFNVVGQQLRFPDSPATSYAS------RDLIRGLLVKEPQHR 653
                         +   +  VV +Q   P+ P    +         ++R         R
Sbjct: 223 DYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAAR 282

Query: 654 L 654
           L
Sbjct: 283 L 283

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (265), Expect = 2e-25
 Identities = 55/380 (14%), Positives = 123/380 (32%), Gaps = 51/380 (13%)

Query: 333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREI-------L 385
           + L+++LG G   +V+L++      + AMK++    + +       +  + +        
Sbjct: 15  YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKE 74

Query: 386 QLLDHPFLPTLYTHFET---DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEV 442
             +    +  L  HF     +    +++    G +L  L ++   +       +  + ++
Sbjct: 75  DSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQL 134

Query: 443 LLALEYLHM-LGVVYRDLKPENVLVRDDGHIM-LSDFDLSLRCAVSPTLIKTSSLDSDPS 500
           LL L+Y+H   G+++ D+KPENVL+        L    ++            ++      
Sbjct: 135 LLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTRE 194

Query: 501 RRGPGGSFC--VQPACIEPSSVCIQPACFIPR-IFPQKNKKKTRKPRSELGLPSSTLPEL 557
            R P               S+ C+         +F         K    +      L EL
Sbjct: 195 YRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGEL 254

Query: 558 VAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT 617
                               P  +   G  +   + + G+  +       P +       
Sbjct: 255 --------------------PSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLE------- 287

Query: 618 LFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI 677
             +V+ ++ +F      +    D +  +L  +P+ R      A  +  HP+ +       
Sbjct: 288 --DVLTEKYKFS--KDEAKEISDFLSPMLQLDPRKRA----DAGGLVNHPWLKDTLGME- 338

Query: 678 RCSTPPEVPRPMEAELPGKF 697
               P        +++PG F
Sbjct: 339 EIRVPDRELYGSGSDIPGWF 358

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 1e-24
 Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 9/153 (5%)

Query: 332 HFRLLKRLGCGDIGSVYLSEL---SSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL 388
           HF   + +G G  G VY   L      + + A+K +++ +     ++++  TE  I++  
Sbjct: 30  HFN--EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT--DIGEVSQFLTEGIIMKDF 85

Query: 389 DHPFLPTLY-THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALE 447
            HP + +L      ++    +V+ Y   GDL    + +   + +      +  +V   ++
Sbjct: 86  SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMK 144

Query: 448 YLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
           +L     V+RDL   N ++ +   + ++DF L+
Sbjct: 145 FLASKKFVHRDLAARNCMLDEKFTVKVADFGLA 177

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 1e-13
 Identities = 14/89 (15%), Positives = 31/89 (34%)

Query: 565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ 624
                    +++A E ++ +   +  D W+FG+ L EL+    P     N   +   + Q
Sbjct: 190 NKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 249

Query: 625 QLRFPDSPATSYASRDLIRGLLVKEPQHR 653
             R            +++      + + R
Sbjct: 250 GRRLLQPEYCPDPLYEVMLKCWHPKAEMR 278

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 74.8 bits (183), Expect = 4e-16
 Identities = 28/161 (17%), Positives = 48/161 (29%), Gaps = 30/161 (18%)

Query: 335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRK---------------KLTRAQ 379
           + K +G G   +V+            +K       + +K                +  A+
Sbjct: 4   IGKLMGEGKESAVFNCYSEKFG-ECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSAR 62

Query: 380 TEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYA 439
            E   LQ L    +P +Y          ++ME                            
Sbjct: 63  NEFRALQKLQGLAVPKVYAWEGN----AVLMELIDAK---------ELYRVRVENPDEVL 109

Query: 440 AEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS 480
             +L  +   +  G+V+ DL   NVLV  +  I + DF  S
Sbjct: 110 DMILEEVAKFYHRGIVHGDLSQYNVLV-SEEGIWIIDFPQS 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	730
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.92
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.45
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.97
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.92
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	97.35
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	96.89
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.84
d1tbna_	66	Protein kinase c-gamma {Rat (Rattus rattus) [TaxId	94.57
d1xa6a3	62	Beta-chimaerin, middle domain {Human (Homo sapiens	92.25
d1kbea_	49	Kinase suppressor of Ras, Ksr {Mouse (Mus musculus	91.25
d1faqa_	52	RAF-1 {Human (Homo sapiens) [TaxId: 9606]}	88.97
d1ptqa_	50	Protein kinase C-delta (PKCdelta) {Mouse (Mus musc	87.69

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-63  Score=521.19  Aligned_cols=279  Identities=33%  Similarity=0.620  Sum_probs=245.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|+++.+++.||||++++...........+.+|+++|+.++||||++++++|++++.+|||
T Consensus         7 p~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~iv   86 (288)
T d1uu3a_           7 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG   86 (288)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEE
T ss_pred             CCCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEE
Confidence            46899999999999999999999999999999999887665556667899999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||||+||+|.+++...  +.+++..++.++.||+.||+|||++|||||||||+||||+.+|++||+|||+|+.+....  
T Consensus        87 mEy~~gg~L~~~~~~~--~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~--  162 (288)
T d1uu3a_          87 LSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPES--  162 (288)
T ss_dssp             ECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             EEccCCCCHHHhhhcc--CCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCC--
Confidence            9999999999887765  679999999999999999999999999999999999999999999999999995431000  


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              ......+.
T Consensus       163 ------------------------------------------------------------------------~~~~~~~~  170 (288)
T d1uu3a_         163 ------------------------------------------------------------------------KQARANSF  170 (288)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    01122346


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      +||+.|||||++.+..|+.++|||||||+||||++|+.||.+.+..+.+.++....+.+|.  .++.++++||++||++|
T Consensus       171 ~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~~L~~d  248 (288)
T d1uu3a_         171 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPE--KFFPKARDLVEKLLVLD  248 (288)
T ss_dssp             CCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCT--TCCHHHHHHHHTTSCSS
T ss_pred             cCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHHcCCCCCCc--cCCHHHHHHHHHHccCC
Confidence            8999999999999999999999999999999999999999988777777778777777664  67999999999999999


Q ss_pred             CCCcCCchh--cHHHHHcCCCCCCCCcchhccCCCCCCC
Q 004790          650 PQHRLGVKR--GATEIKQHPFFEGVNWALIRCSTPPEVP  686 (730)
Q Consensus       650 P~~R~t~~~--~a~elL~HPfF~~v~w~~~r~~~pp~~p  686 (730)
                      |.+|||+++  ....+++||||+++||..++..+||.+|
T Consensus       249 P~~R~t~~e~~~~~~i~~Hpff~~i~w~~l~~~~pP~l~  287 (288)
T d1uu3a_         249 ATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT  287 (288)
T ss_dssp             GGGSTTSGGGTCHHHHHTSGGGTTCCCTTGGGSCCCCCC
T ss_pred             HhHCcCHHHHcCCHHHHcCCccCCCCHHHhhcCCCCCCC
Confidence            999999754  3456899999999999999988888765

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-62  Score=526.77  Aligned_cols=285  Identities=38%  Similarity=0.684  Sum_probs=251.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +.+++|++++.||+|+||+||+|+++.+++.||||++++..........++.+|+.+|+.++||||++++++|+++..+|
T Consensus         2 i~l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~   81 (337)
T d1o6la_           2 VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             CchHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccc
Confidence            45789999999999999999999999999999999999887666666778899999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +|||||+||+|..++.+.  +.+++..+++|++||+.||+|||++|||||||||+||||+.+|++||+|||+|+....  
T Consensus        82 iv~ey~~gg~L~~~~~~~--~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~--  157 (337)
T d1o6la_          82 FVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS--  157 (337)
T ss_dssp             EEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC--
T ss_pred             cceeccCCCchhhhhhcc--cCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeeccccccccc--
Confidence            999999999999988775  6799999999999999999999999999999999999999999999999999853210  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                ......
T Consensus       158 --------------------------------------------------------------------------~~~~~~  163 (337)
T d1o6la_         158 --------------------------------------------------------------------------DGATMK  163 (337)
T ss_dssp             --------------------------------------------------------------------------TTCCBC
T ss_pred             --------------------------------------------------------------------------CCcccc
Confidence                                                                                      001123


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +++||+.|+|||++.+..|+.++|||||||+||||++|++||.+.+....+..+....+.+|.  .++.++++||++||+
T Consensus       164 ~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~dli~~~L~  241 (337)
T d1o6la_         164 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPR--TLSPEAKSLLAGLLK  241 (337)
T ss_dssp             CCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHTC
T ss_pred             cceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCCCCCCc--cCCHHHHHHHHhhcc
Confidence            469999999999999999999999999999999999999999998777777777777777764  589999999999999


Q ss_pred             CCCCCcCCch-hcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCcC
Q 004790          648 KEPQHRLGVK-RGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEAE  692 (730)
Q Consensus       648 ~DP~~R~t~~-~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~~  692 (730)
                      +||.+|++.. ..++|+++||||++++|..+  +...||..|......
T Consensus       242 ~dP~~R~~~~~~~~~eil~Hp~f~~i~~~~l~~~~~~~p~~P~~~~~~  289 (337)
T d1o6la_         242 KDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEV  289 (337)
T ss_dssp             SSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCSSTT
T ss_pred             CCchhhcccccccHHHHHcCcccccCCHHHHHhCCCCCCCCCCCCChh
Confidence            9999999753 24899999999999999977  455677777654433

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-60  Score=510.36  Aligned_cols=277  Identities=35%  Similarity=0.712  Sum_probs=245.0

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      .+++|++++.||+|+||+||+|+++.+|+.||||++++.........+.+.+|+.+|+.++|||||+++++|++++.+|+
T Consensus         2 sl~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~i   81 (316)
T d1fota_           2 SLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFM   81 (316)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEE
T ss_pred             chhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeee
Confidence            35789999999999999999999999999999999988766555667789999999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      |||||.||+|..++...  ..+++..++.|+.||+.||+|||++|||||||||+||||+.+|++||+|||+|+....   
T Consensus        82 vmE~~~gg~l~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~---  156 (316)
T d1fota_          82 IMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPD---  156 (316)
T ss_dssp             EECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSS---
T ss_pred             EeeecCCcccccccccc--ccccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEecc---
Confidence            99999999999887765  5789999999999999999999999999999999999999999999999999854210   


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                  ...+
T Consensus       157 ----------------------------------------------------------------------------~~~~  160 (316)
T d1fota_         157 ----------------------------------------------------------------------------VTYT  160 (316)
T ss_dssp             ----------------------------------------------------------------------------CBCC
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        1124


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .+||+.|||||++.+..|+.++|||||||+||||++|+.||.+.+..+.+.++......+|  ..++.++++||++||.+
T Consensus       161 ~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~li~~~L~~  238 (316)
T d1fota_         161 LCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFP--PFFNEDVKDLLSRLITR  238 (316)
T ss_dssp             CCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCC--TTSCHHHHHHHHHHTCS
T ss_pred             ccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHhhh
Confidence            5899999999999999999999999999999999999999999877777777777776665  46899999999999999


Q ss_pred             CCCCcCCc-hhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCC
Q 004790          649 EPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCSTPPEVPRP  688 (730)
Q Consensus       649 DP~~R~t~-~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p  688 (730)
                      ||.+|++. +..+++||+||||++++|..+  +...+|.+|..
T Consensus       239 dp~~R~~~~r~t~~~il~Hp~f~~i~~~~l~~~~~~~p~~p~~  281 (316)
T d1fota_         239 DLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPI  281 (316)
T ss_dssp             CTTTCTTSSTTTTHHHHTSGGGSSCCHHHHHTTCSCCSCCCCC
T ss_pred             CHHhccccchhhHHHHHcCcccccCCHHHHHhCCCCcCCCCCc
Confidence            99999843 235899999999999999976  45567776653

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-60  Score=514.68  Aligned_cols=288  Identities=36%  Similarity=0.639  Sum_probs=250.9

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ..+++|++++.||+|+||+||+|+++.+|+.||||++++.........+.+.+|+++|+.++|||||+++++|.+...+|
T Consensus        38 ~~ld~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~  117 (350)
T d1rdqe_          38 AQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLY  117 (350)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             CCccCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccc
Confidence            44689999999999999999999999999999999998876655566678899999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      +||||+.||+|..++.+.  +.+++..++.|+.||+.||.|||++|||||||||+||||+.+|++||+|||+|+....  
T Consensus       118 ~v~e~~~~g~l~~~l~~~--~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~--  193 (350)
T d1rdqe_         118 MVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG--  193 (350)
T ss_dssp             EEEECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS--
T ss_pred             cccccccccchhhhHhhc--CCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeeccc--
Confidence            999999999999888765  5799999999999999999999999999999999999999999999999999954210  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                   ...
T Consensus       194 -----------------------------------------------------------------------------~~~  196 (350)
T d1rdqe_         194 -----------------------------------------------------------------------------RTW  196 (350)
T ss_dssp             -----------------------------------------------------------------------------CBC
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         112


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhc
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +.+||+.|||||++.+..|+.++|||||||+||||++|+.||.+.+....+.++....+.+|  ..++.++++||++||.
T Consensus       197 ~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~li~~~L~  274 (350)
T d1rdqe_         197 TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFP--SHFSSDLKDLLRNLLQ  274 (350)
T ss_dssp             CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCC--TTCCHHHHHHHHHHSC
T ss_pred             cccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCCCCCC--ccCCHHHHHHHHHHhh
Confidence            35899999999999999999999999999999999999999998877777777777766665  4689999999999999


Q ss_pred             CCCCCcC-CchhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCcCCCCCCC
Q 004790          648 KEPQHRL-GVKRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEAELPGKFG  698 (730)
Q Consensus       648 ~DP~~R~-t~~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~~~p~~~~  698 (730)
                      +||.+|+ +.+..+++|++||||++++|..+  +...||++|..........|.
T Consensus       275 ~dP~kR~~~~r~t~~ell~Hp~f~~~~~~~~~~~~~~~p~~p~~~~~~d~s~~~  328 (350)
T d1rdqe_         275 VDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFD  328 (350)
T ss_dssp             SCTTTCTTSSTTTTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCSTTCCTTSC
T ss_pred             hCHHhccccccccHHHHHcCccccCCCHHHHHhcCCCcCccCCCCCcchhhhcC
Confidence            9999996 23345899999999999999876  345678888765544444443

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-60  Score=496.20  Aligned_cols=257  Identities=33%  Similarity=0.560  Sum_probs=231.0

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeE
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      .+++|++++.||+|+||+||+|+++.+++.||||++.+...........+.+|+++|+.++|||||+++++|.+++.+||
T Consensus         4 ~l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i   83 (263)
T d2j4za1           4 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   83 (263)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             chhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEE
Confidence            45789999999999999999999999999999999988766555566778999999999999999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      |||||+||+|..++.+.  ..+++..++.|+.||+.||+|||++|||||||||+||||+.+|++||+|||+|+....   
T Consensus        84 vmEy~~~g~L~~~l~~~--~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~---  158 (263)
T d2j4za1          84 ILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS---  158 (263)
T ss_dssp             EEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCC---
T ss_pred             EEeecCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCC---
Confidence            99999999999988765  5799999999999999999999999999999999999999999999999999843100   


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                                 .....
T Consensus       159 ---------------------------------------------------------------------------~~~~~  163 (263)
T d2j4za1         159 ---------------------------------------------------------------------------SRRTT  163 (263)
T ss_dssp             ---------------------------------------------------------------------------CCCEE
T ss_pred             ---------------------------------------------------------------------------Ccccc
Confidence                                                                                       01124


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .+||+.|||||++.+..|+.++|||||||+||||++|+.||.+.+..+.+.++....+.+|.  .++.++++||.+||.+
T Consensus       164 ~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~~L~~  241 (263)
T d2j4za1         164 LCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPD--FVTEGARDLISRLLKH  241 (263)
T ss_dssp             TTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCT--TSCHHHHHHHHHHTCS
T ss_pred             cCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCc--cCCHHHHHHHHHHccC
Confidence            58999999999999999999999999999999999999999988777777777777766664  5899999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||++|||    ++|+|+||||..
T Consensus       242 dp~~R~t----~~eil~hp~~~~  260 (263)
T d2j4za1         242 NPSQRPM----LREVLEHPWITA  260 (263)
T ss_dssp             SGGGSCC----HHHHHTCHHHHH
T ss_pred             CHhHCcC----HHHHHcCcCcCC
Confidence            9999999    799999999963

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.6e-59  Score=506.13  Aligned_cols=281  Identities=33%  Similarity=0.590  Sum_probs=232.5

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHH---HHHHHhcCCCCCccccccccccce
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTE---REILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E---~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      .+++|++++.||+|+||+||+|+++.+|+.||||++.+...........+.+|   +.+++.++|||||+++++|++++.
T Consensus         2 slddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~   81 (364)
T d1omwa3           2 TMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDK   81 (364)
T ss_dssp             CSTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSE
T ss_pred             CHHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCE
Confidence            46899999999999999999999999999999999987765444333344444   556667789999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|||||||+||+|..++.+.  ..+++..++.|+.||+.||+|||++|||||||||+||||+.+|++||+|||+|+.+..
T Consensus        82 ~~ivmE~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~  159 (364)
T d1omwa3          82 LSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK  159 (364)
T ss_dssp             EEEEECCCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSS
T ss_pred             EEEEEEecCCCcHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCC
Confidence            99999999999999988765  5789999999999999999999999999999999999999999999999999854210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                                                                                                    ..
T Consensus       160 ------------------------------------------------------------------------------~~  161 (364)
T d1omwa3         160 ------------------------------------------------------------------------------KK  161 (364)
T ss_dssp             ------------------------------------------------------------------------------SC
T ss_pred             ------------------------------------------------------------------------------Cc
Confidence                                                                                          01


Q ss_pred             ccccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCcccee---eeecccccCCCCCCCChhHHHH
Q 004790          566 SMSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF---NVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~---~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      ....+||+.|+|||++.+ ..|+.++|||||||+||||++|+.||.+........   .+......+  +..++.++++|
T Consensus       162 ~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~~l  239 (364)
T d1omwa3         162 PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVEL--PDSFSPELRSL  239 (364)
T ss_dssp             CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCC--CSSSCHHHHHH
T ss_pred             ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCC--CCCCCHHHHHH
Confidence            123589999999999974 568999999999999999999999998765433221   222223333  34689999999


Q ss_pred             HHhhhcCCCCCcCCc-hhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCCCc
Q 004790          642 IRGLLVKEPQHRLGV-KRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPMEA  691 (730)
Q Consensus       642 I~~lL~~DP~~R~t~-~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~~~  691 (730)
                      |.+||.+||.+||++ ...|+|+++||||++++|..+  +...||.+|.....
T Consensus       240 i~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~~~~~~~~~~~p~~p~~~~~  292 (364)
T d1omwa3         240 LEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEV  292 (364)
T ss_dssp             HHHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC--
T ss_pred             HHHHcccCHHHhCCCcccCHHHHHcCccccCCCHHHHhcCCCCcCcCCCCCCC
Confidence            999999999999995 346899999999999999866  45567777655443

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-59  Score=487.95  Aligned_cols=260  Identities=25%  Similarity=0.434  Sum_probs=219.4

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|+++.+++.||||++++....  +..+++++|+++|+.++|||||+++++|++++.+|||
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~--~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~iv   81 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV--DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   81 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc--hHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEE
Confidence            36899999999999999999999999999999999875432  3345688999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||||+||+|.+++...  +.+++..++.|++||+.||+|||++|||||||||+||||+.+|++||+|||+|+......  
T Consensus        82 mEy~~gg~L~~~l~~~--~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~--  157 (271)
T d1nvra_          82 LEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNN--  157 (271)
T ss_dssp             EECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETT--
T ss_pred             EeccCCCcHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCC--
Confidence            9999999999988754  679999999999999999999999999999999999999999999999999995431100  


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              ......+.
T Consensus       158 ------------------------------------------------------------------------~~~~~~~~  165 (271)
T d1nvra_         158 ------------------------------------------------------------------------RERLLNKM  165 (271)
T ss_dssp             ------------------------------------------------------------------------EECCBCCC
T ss_pred             ------------------------------------------------------------------------ccccccce
Confidence                                                                                    00112346


Q ss_pred             ccCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec-ccccCCCCCCCChhHHHHHHhhhc
Q 004790          570 VGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG-QQLRFPDSPATSYASRDLIRGLLV  647 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~-~~~~~p~~~~~s~~~~dLI~~lL~  647 (730)
                      +||+.|||||++.+..+ +.++|||||||+||||++|+.||.+............ .....+....++.++++||.+||.
T Consensus       166 ~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~  245 (271)
T d1nvra_         166 CGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILV  245 (271)
T ss_dssp             CSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSC
T ss_pred             eeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHcC
Confidence            89999999999999886 5789999999999999999999987665544443332 333333445679999999999999


Q ss_pred             CCCCCcCCchhcHHHHHcCCCCCC
Q 004790          648 KEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       648 ~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      .||++|||    ++|+|+||||+.
T Consensus       246 ~dP~~R~t----~~eil~hpwf~~  265 (271)
T d1nvra_         246 ENPSARIT----IPDIKKDRWYNK  265 (271)
T ss_dssp             SSTTTSCC----HHHHTTCTTTTC
T ss_pred             CChhHCcC----HHHHhcCHhhCc
Confidence            99999999    799999999974

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-59  Score=499.05  Aligned_cols=277  Identities=37%  Similarity=0.715  Sum_probs=235.4

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHH-hcCCCCCccccccccccceeeE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ-LLDHPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~-~L~HPnIV~L~~~f~~~~~l~L  408 (730)
                      +++|++++.||+|+||+||+|+++.+++.||||++++.........+.+.+|..++. .++|||||+++++|++++.+||
T Consensus         1 iddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yi   80 (320)
T d1xjda_           1 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFF   80 (320)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             CCCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeE
Confidence            368999999999999999999999999999999998876555555666777888765 6899999999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPT  488 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~  488 (730)
                      |||||+||+|..++...  ..+++.+++.|+.||+.||+|||++|||||||||+|||++.+|++||+|||+++....   
T Consensus        81 vmEy~~~g~L~~~i~~~--~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~---  155 (320)
T d1xjda_          81 VMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENML---  155 (320)
T ss_dssp             EEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC---
T ss_pred             EEeecCCCcHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhccc---
Confidence            99999999999988765  5799999999999999999999999999999999999999999999999999853210   


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccc
Q 004790          489 LIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMS  568 (730)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s  568 (730)
                                                                                               .......
T Consensus       156 -------------------------------------------------------------------------~~~~~~~  162 (320)
T d1xjda_         156 -------------------------------------------------------------------------GDAKTNT  162 (320)
T ss_dssp             -------------------------------------------------------------------------TTCCBCC
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0001123


Q ss_pred             cccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          569 FVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       569 ~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+....+.++..+.+.+|  ..++.++++||++||.+
T Consensus       163 ~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p--~~~s~~~~dli~~~L~~  240 (320)
T d1xjda_         163 FCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYP--RWLEKEAKDLLVKLFVR  240 (320)
T ss_dssp             CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCC--TTSCHHHHHHHHHHSCS
T ss_pred             cCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCC--ccCCHHHHHHHHHhccc
Confidence            5899999999999999999999999999999999999999999877777777776666655  35799999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCCCCcchh--ccCCCCCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEGVNWALI--RCSTPPEVPRPM  689 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~v~w~~~--r~~~pp~~p~p~  689 (730)
                      ||.+||+++   .++++||||++++|..+  +...||..|...
T Consensus       241 dP~~R~s~~---~~l~~hpff~~~~~~~l~~~~~~pp~~p~~~  280 (320)
T d1xjda_         241 EPEKRLGVR---GDIRQHPLFREINWEELERKEIDPPFRPKVK  280 (320)
T ss_dssp             SGGGSBTTB---SCGGGSGGGTTCCHHHHHTTCSCC-------
T ss_pred             CCCCCcCHH---HHHHhCchhccCCHHHHHhcCCCCCCCCCCC
Confidence            999999942   47999999999999876  344566666543

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-58  Score=489.16  Aligned_cols=255  Identities=24%  Similarity=0.393  Sum_probs=223.7

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      ++|++++.||+|+||+||+|+++.+|+.||||++++.....   .+.+.+|+++|+.++|||||+++++|.+++.+||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~---~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   96 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK---KELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   96 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSC---HHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChH---HHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEE
Confidence            57999999999999999999999999999999998765433   346789999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |||+||+|..++.+   +.+++.+++.|++||+.||+|||++|||||||||+||||+.+|++||+|||+|+.+...    
T Consensus        97 Ey~~gg~L~~~~~~---~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~----  169 (293)
T d1yhwa1          97 EYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE----  169 (293)
T ss_dssp             ECCTTCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCST----
T ss_pred             EecCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeeccc----
Confidence            99999999988765   36999999999999999999999999999999999999999999999999998543100    


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                              .......+
T Consensus       170 ------------------------------------------------------------------------~~~~~~~~  177 (293)
T d1yhwa1         170 ------------------------------------------------------------------------QSKRSTMV  177 (293)
T ss_dssp             ------------------------------------------------------------------------TCCBCCCC
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    00122458


Q ss_pred             cCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-cccCCCCCCCChhHHHHHHhhhcCC
Q 004790          571 GTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-QLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       571 GT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      ||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+....+..+... ...++.+..++.++++||.+||.+|
T Consensus       178 gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  257 (293)
T d1yhwa1         178 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMD  257 (293)
T ss_dssp             SCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSS
T ss_pred             cCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            999999999999999999999999999999999999999987766666665543 3334444668999999999999999


Q ss_pred             CCCcCCchhcHHHHHcCCCCCC
Q 004790          650 PQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       650 P~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |.+|||    ++|+|+||||+.
T Consensus       258 P~~R~s----~~eil~Hp~~~~  275 (293)
T d1yhwa1         258 VEKRGS----AKELLQHQFLKI  275 (293)
T ss_dssp             TTTSCC----HHHHTTCGGGGG
T ss_pred             hhHCcC----HHHHhcCHhhCC
Confidence            999999    799999999974

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-59  Score=498.19  Aligned_cols=262  Identities=24%  Similarity=0.374  Sum_probs=219.0

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|++++.||+|+||+||+|+++.+++.||||++++...  ......+.+|+.+|+.++|||||+++++|.++.++|
T Consensus         3 l~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~   80 (322)
T d1s9ja_           3 LKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIK--PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEIS   80 (322)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCC--TTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEE
T ss_pred             CCccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhC--HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            456789999999999999999999999999999999976532  233457889999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      ||||||+||+|..++.+.  +.+++..++.|+.||+.||.|||+ +|||||||||+||||+.+|++||+|||+|+.... 
T Consensus        81 iVmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~-  157 (322)
T d1s9ja_          81 ICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID-  157 (322)
T ss_dssp             EEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH-
T ss_pred             EEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCC-
Confidence            999999999999988765  579999999999999999999997 5999999999999999999999999999854210 


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                                                                                                   ...
T Consensus       158 -----------------------------------------------------------------------------~~~  160 (322)
T d1s9ja_         158 -----------------------------------------------------------------------------SMA  160 (322)
T ss_dssp             -----------------------------------------------------------------------------HTC
T ss_pred             -----------------------------------------------------------------------------Ccc
Confidence                                                                                         012


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceee---ee---------------------
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN---VV---------------------  622 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~---i~---------------------  622 (730)
                      .+++||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+.......   ..                     
T Consensus       161 ~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (322)
T d1s9ja_         161 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSY  240 (322)
T ss_dssp             ---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC-------------------------
T ss_pred             ccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCccccccccccccc
Confidence            346899999999999999999999999999999999999999987643321100   00                     


Q ss_pred             ------------------cccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          623 ------------------GQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       623 ------------------~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                                        ............+.+++|||.+||++||.+|||    ++|+|+||||+..+|.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~t----a~e~L~Hpf~~~~~~~  307 (322)
T d1s9ja_         241 GMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERAD----LKQLMVHAFIKRSDAE  307 (322)
T ss_dssp             -----CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCC----HHHHHTSHHHHHHHHS
T ss_pred             ccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcC----HHHHhhCHhhCcCCcc
Confidence                              000000011235789999999999999999999    7999999999987764

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-58  Score=482.90  Aligned_cols=264  Identities=30%  Similarity=0.456  Sum_probs=227.1

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH---HHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR---KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~---~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      ++|++++.||+|+||+||+|+++.+|+.||||++++......   ...+.+.+|+.+|+.++|||||+++++|++++.+|
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            579999999999999999999999999999999986544321   12466889999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC----ceEEecccccccc
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG----HIMLSDFDLSLRC  483 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g----~vKL~DFGlA~~~  483 (730)
                      ||||||+||+|.+++...  +.+++..++.|++||+.||+|||++|||||||||+|||++.+|    ++||+|||+|...
T Consensus        90 iv~E~~~gg~L~~~i~~~--~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~  167 (293)
T d1jksa_          90 LILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI  167 (293)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEEC
T ss_pred             EEEEcCCCccccchhccc--cccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhc
Confidence            999999999999988765  5799999999999999999999999999999999999998776    5999999998542


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ...                                                                             
T Consensus       168 ~~~-----------------------------------------------------------------------------  170 (293)
T d1jksa_         168 DFG-----------------------------------------------------------------------------  170 (293)
T ss_dssp             TTS-----------------------------------------------------------------------------
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRDL  641 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~dL  641 (730)
                      ....+.+||+.|+|||++.+..|+.++|||||||+||||++|+.||.+.+..+.+.++......++.  ...++.++++|
T Consensus       171 ~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  250 (293)
T d1jksa_         171 NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDF  250 (293)
T ss_dssp             CBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHH
T ss_pred             ccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHHHHHH
Confidence            0112357999999999999999999999999999999999999999998877777777766665543  25678999999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcchh
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALI  677 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~~~  677 (730)
                      |++||.+||.+|||    ++|+|+||||+..+|...
T Consensus       251 i~~~L~~dP~~R~s----~~eil~hp~~~~~~~~~~  282 (293)
T d1jksa_         251 IRRLLVKDPKKRMT----IQDSLQHPWIKPKDTQQA  282 (293)
T ss_dssp             HHTTSCSSGGGSCC----HHHHHHSTTTCC------
T ss_pred             HHHHccCChhHCcC----HHHHhcCcccCCCChhHh
Confidence            99999999999999    799999999999998753

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1.6e-57  Score=492.75  Aligned_cols=262  Identities=29%  Similarity=0.421  Sum_probs=230.4

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +++|++++.||+|+||+||+|+++.+|+.||||++.+...   ...+.+.+|+.+|+.|+|||||+++++|++++.+|||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~---~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv  101 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE---SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  101 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSH---HHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccch---hhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            5789999999999999999999999999999999977543   3345688999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC--CCceEEecccccccccCCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD--DGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~--~g~vKL~DFGlA~~~~~~~  487 (730)
                      ||||+||+|.+++... .+.+++..++.|++||+.||+|||++|||||||||+||||+.  +|++||+|||+|+.+..  
T Consensus       102 mE~~~gg~L~~~l~~~-~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~--  178 (350)
T d1koaa2         102 YEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP--  178 (350)
T ss_dssp             ECCCCSCBHHHHHTCT-TSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCT--
T ss_pred             EEcCCCCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheeccc--
Confidence            9999999999887544 256999999999999999999999999999999999999964  68999999999854210  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       179 ---------------------------------------------------------------------------~~~~~  183 (350)
T d1koaa2         179 ---------------------------------------------------------------------------KQSVK  183 (350)
T ss_dssp             ---------------------------------------------------------------------------TSCEE
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00123


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCC--CCCChhHHHHHHhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS--PATSYASRDLIRGL  645 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~--~~~s~~~~dLI~~l  645 (730)
                      +.+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+.+.++......++..  ..++.++++||.+|
T Consensus       184 ~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  263 (350)
T d1koaa2         184 VTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKL  263 (350)
T ss_dssp             EECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHH
T ss_pred             eecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999887777777777766655543  46789999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCCCCCCcch
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFFEGVNWAL  676 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF~~v~w~~  676 (730)
                      |.+||.+|||    ++|+|+||||+..+|..
T Consensus       264 L~~dP~~R~t----~~eil~hp~~~~~~~~~  290 (350)
T d1koaa2         264 LLADPNTRMT----IHQALEHPWLTPGNAPG  290 (350)
T ss_dssp             CCSSGGGSCC----HHHHHHSTTTSCTTCCS
T ss_pred             ccCChhHCcC----HHHHhcCcccCCCCCCC
Confidence            9999999999    79999999999887754

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.5e-58  Score=487.14  Aligned_cols=256  Identities=31%  Similarity=0.485  Sum_probs=212.2

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +.|++++.||+|+||+||+|+++.+++.||||++.+.....  ....+.+|+++|+.++|||||+++++|++++.+||||
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~--~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvm   86 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG--KEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIM   86 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC------------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhh--HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            56999999999999999999999999999999998765433  2356789999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec---CCCceEEecccccccccCCC
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR---DDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~---~~g~vKL~DFGlA~~~~~~~  487 (730)
                      |||+||+|.+++...  +.+++..++.|+.||+.||+|||++|||||||||+|||+.   .+|++||+|||+|+....  
T Consensus        87 E~~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~--  162 (307)
T d1a06a_          87 QLVSGGELFDRIVEK--GFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP--  162 (307)
T ss_dssp             CCCCSCBHHHHHHTC--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC----------
T ss_pred             eccCCCcHHHhhhcc--cCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccC--
Confidence            999999999988764  5799999999999999999999999999999999999994   578999999999843210  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       163 ---------------------------------------------------------------------------~~~~~  167 (307)
T d1a06a_         163 ---------------------------------------------------------------------------GSVLS  167 (307)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------------------------------------------CCeee
Confidence                                                                                       00112


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC--CCCCCChhHHHHHHhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP--DSPATSYASRDLIRGL  645 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p--~~~~~s~~~~dLI~~l  645 (730)
                      +.+||+.|||||++.+..|+.++|||||||+||||++|+.||.+......+.++......++  ....++.++++||.+|
T Consensus       168 ~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  247 (307)
T d1a06a_         168 TACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHL  247 (307)
T ss_dssp             -----CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHH
T ss_pred             eeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999998777777767776665544  3457899999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |.+||++|||    ++|+++||||++
T Consensus       248 L~~dP~~R~s----~~eil~hp~~~~  269 (307)
T d1a06a_         248 MEKDPEKRFT----CEQALQHPWIAG  269 (307)
T ss_dssp             SCSSGGGSCC----HHHHHHSTTTTS
T ss_pred             ccCCHhHCcC----HHHHhcCHhhCC
Confidence            9999999999    799999999985

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-57  Score=486.16  Aligned_cols=254  Identities=28%  Similarity=0.382  Sum_probs=226.5

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEee
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVME  411 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmE  411 (730)
                      .|++++.||+|+||+||+|+++.+++.||||++++.........+.+.+|+++|+.|+|||||+++++|.+++.+|||||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            49999999999999999999999999999999988776666777889999999999999999999999999999999999


Q ss_pred             ecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccc
Q 004790          412 YCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIK  491 (730)
Q Consensus       412 y~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~  491 (730)
                      ||.||+|..++...  +.+++..++.|+.||+.||.|||++|||||||||+||||+.+|++||+|||+|....       
T Consensus        96 ~~~~g~l~~~~~~~--~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~-------  166 (309)
T d1u5ra_          96 YCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA-------  166 (309)
T ss_dssp             CCSEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSS-------
T ss_pred             ecCCCchHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccC-------
Confidence            99999997665543  579999999999999999999999999999999999999999999999999984310       


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccccc
Q 004790          492 TSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVG  571 (730)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vG  571 (730)
                                                                                               ...+.+|
T Consensus       167 -------------------------------------------------------------------------~~~~~~G  173 (309)
T d1u5ra_         167 -------------------------------------------------------------------------PANSFVG  173 (309)
T ss_dssp             -------------------------------------------------------------------------SBCCCCS
T ss_pred             -------------------------------------------------------------------------CCCcccc
Confidence                                                                                     0123579


Q ss_pred             CcccCChhhhccC---CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          572 THEYLAPEIIKGE---GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       572 T~~Y~APEvl~g~---~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      |+.|||||++.+.   .|+.++|||||||++|||++|+.||.+.+....+.++............++.++++||++||.+
T Consensus       174 T~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~  253 (309)
T d1u5ra_         174 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQK  253 (309)
T ss_dssp             CGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCS
T ss_pred             CccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHCcC
Confidence            9999999999753   4889999999999999999999999988777777777666655555567899999999999999


Q ss_pred             CCCCcCCchhcHHHHHcCCCCCC
Q 004790          649 EPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||.+|||    ++|+|+||||..
T Consensus       254 dP~~Rpt----~~ell~Hp~~~~  272 (309)
T d1u5ra_         254 IPQDRPT----SEVLLKHRFVLR  272 (309)
T ss_dssp             SGGGSCC----HHHHTTCHHHHS
T ss_pred             ChhHCcC----HHHHHhCHHhcC
Confidence            9999999    799999999974

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-57  Score=480.96  Aligned_cols=257  Identities=28%  Similarity=0.432  Sum_probs=223.3

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEe
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVM  410 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVm  410 (730)
                      +.|++++.||+|+||+||+|+++.+++.||||++++...   +..+.+.+|+++|+.++|||||+++++|.+++.+||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~---~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvm   88 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSE---EELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILI   88 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSS---GGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCH---HHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEE
Confidence            469999999999999999999999999999999976532   33456789999999999999999999999999999999


Q ss_pred             eecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccc
Q 004790          411 EYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLI  490 (730)
Q Consensus       411 Ey~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~  490 (730)
                      |||+||+|..++.+. .+.+++.+++.|+.||+.||.|||++|||||||||+||||+.+|++||+|||+|+....     
T Consensus        89 Ey~~~g~L~~~~~~~-~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~-----  162 (288)
T d2jfla1          89 EFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTR-----  162 (288)
T ss_dssp             ECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHH-----
T ss_pred             ecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCC-----
Confidence            999999999886653 35699999999999999999999999999999999999999999999999999853210     


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccc
Q 004790          491 KTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFV  570 (730)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~v  570 (730)
                                                                                             ......+.+
T Consensus       163 -----------------------------------------------------------------------~~~~~~~~~  171 (288)
T d2jfla1         163 -----------------------------------------------------------------------TIQRRDSFI  171 (288)
T ss_dssp             -----------------------------------------------------------------------HHHHHTCCC
T ss_pred             -----------------------------------------------------------------------Ccccccccc
Confidence                                                                                   001123468


Q ss_pred             cCcccCChhhhc-----cCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc-cCCCCCCCChhHHHHHHh
Q 004790          571 GTHEYLAPEIIK-----GEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL-RFPDSPATSYASRDLIRG  644 (730)
Q Consensus       571 GT~~Y~APEvl~-----g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~-~~p~~~~~s~~~~dLI~~  644 (730)
                      ||+.|||||++.     +..|+.++|||||||+||||++|+.||.+.+..+.+.++..... .++....++.++++||++
T Consensus       172 Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~  251 (288)
T d2jfla1         172 GTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKK  251 (288)
T ss_dssp             SCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHH
T ss_pred             cccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Confidence            999999999995     45589999999999999999999999999888777777766543 233445689999999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      ||++||.+|||    ++|+++||||+.
T Consensus       252 ~L~~dp~~R~t----~~ell~hp~~~~  274 (288)
T d2jfla1         252 CLEKNVDARWT----TSQLLQHPFVTV  274 (288)
T ss_dssp             HSCSSTTTSCC----HHHHTTSGGGCC
T ss_pred             HccCChhHCcC----HHHHhcCcccCC
Confidence            99999999999    799999999974

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-57  Score=474.13  Aligned_cols=257  Identities=25%  Similarity=0.362  Sum_probs=212.9

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc--cceeeE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET--DRFSCL  408 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~--~~~l~L  408 (730)
                      ++|++++.||+|+||+||+|+++.+++.||||++++.... +...+.+.+|+++|+.++|||||+++++|.+  ++.+||
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~i   82 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT-EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   82 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSC-HHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCC-HHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEE
Confidence            6899999999999999999999999999999999876553 3456778999999999999999999998854  567899


Q ss_pred             EeeecCCCCcccccccc--CCCCccHHHHHHhHHHHHHHHHHhHhcc-----eeecccCCccEEecCCCceEEecccccc
Q 004790          409 VMEYCPGGDLHTLRQRQ--PGKHFSEYAARFYAAEVLLALEYLHMLG-----VVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~--~~~~lse~~a~~~~~qIl~AL~yLH~~g-----IVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      |||||+||+|.+++.+.  ....+++..++.|+.||+.||.|||++|     ||||||||+||||+.+|++||+|||+|+
T Consensus        83 vmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~  162 (269)
T d2java1          83 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  162 (269)
T ss_dssp             EEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHH
T ss_pred             EEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeecccee
Confidence            99999999999987642  2357999999999999999999999976     9999999999999999999999999996


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      .+...                                                                           
T Consensus       163 ~~~~~---------------------------------------------------------------------------  167 (269)
T d2java1         163 ILNHD---------------------------------------------------------------------------  167 (269)
T ss_dssp             HC------------------------------------------------------------------------------
T ss_pred             ecccC---------------------------------------------------------------------------
Confidence            43100                                                                           


Q ss_pred             ccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHH
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                       .....+.+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+.+.++....+. +.+..++.++++|
T Consensus       168 -~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~~~~-~~~~~~s~~l~~l  245 (269)
T d2java1         168 -TSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFR-RIPYRYSDELNEI  245 (269)
T ss_dssp             ---------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC-CCCTTSCHHHHHH
T ss_pred             -CCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCC-CCCcccCHHHHHH
Confidence             00123468999999999999999999999999999999999999999987766666666555443 2234689999999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      |++||..||.+||+    ++||++|||.
T Consensus       246 i~~~L~~dp~~Rps----~~ell~hp~i  269 (269)
T d2java1         246 ITRMLNLKDYHRPS----VEEILENPLI  269 (269)
T ss_dssp             HHHHTCSSGGGSCC----HHHHHTSTTC
T ss_pred             HHHHcCCChhHCcC----HHHHHhCCcC
Confidence            99999999999999    7999999995

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.2e-56  Score=486.23  Aligned_cols=258  Identities=28%  Similarity=0.425  Sum_probs=227.2

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|+++.+++.||||++++....   ....+.+|+++|+.|+|||||+++++|++++.+|||
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~---~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv  104 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPL---DKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  104 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHH---HHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchh---HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            46799999999999999999999999999999999876433   235678999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEec--CCCceEEecccccccccCCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVR--DDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~--~~g~vKL~DFGlA~~~~~~~  487 (730)
                      ||||+||+|.+++... +..|++..++.|+.||+.||.|||++|||||||||+||||+  .+|++||+|||+|+.+..  
T Consensus       105 mE~~~gg~L~~~~~~~-~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~--  181 (352)
T d1koba_         105 LEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP--  181 (352)
T ss_dssp             EECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT--
T ss_pred             EEcCCCChHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCC--
Confidence            9999999998866543 35699999999999999999999999999999999999997  578999999999954310  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       182 ---------------------------------------------------------------------------~~~~~  186 (352)
T d1koba_         182 ---------------------------------------------------------------------------DEIVK  186 (352)
T ss_dssp             ---------------------------------------------------------------------------TSCEE
T ss_pred             ---------------------------------------------------------------------------CCcee
Confidence                                                                                       00122


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC--CCCCChhHHHHHHhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD--SPATSYASRDLIRGL  645 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~--~~~~s~~~~dLI~~l  645 (730)
                      +.+||+.|+|||++.+..|+.++|||||||+||||++|+.||.+.+..+.+.++....+.++.  ...++.++++||.+|
T Consensus       187 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  266 (352)
T d1koba_         187 VTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNL  266 (352)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTT
T ss_pred             eccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHH
Confidence            458999999999999999999999999999999999999999998877777777776665553  356899999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      |++||.+|||    ++|+|+||||++.
T Consensus       267 L~~dp~~R~s----~~eil~Hp~~~~~  289 (352)
T d1koba_         267 LQKEPRKRLT----VHDALEHPWLKGD  289 (352)
T ss_dssp             SCSSGGGSCC----HHHHHTSTTTSSC
T ss_pred             ccCChhHCcC----HHHHhcCHhhCCC
Confidence            9999999999    7999999999874

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-56  Score=468.44  Aligned_cols=252  Identities=23%  Similarity=0.404  Sum_probs=214.1

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc----cceeeE
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET----DRFSCL  408 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~----~~~l~L  408 (730)
                      |++.++||+|+||+||+|+++.++..||+|++.+.... ....+.+.+|+++|+.++|||||+++++|++    +..+||
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~i   89 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL   89 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCC-HHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEE
Confidence            47888999999999999999999999999999876543 3455678999999999999999999999864    467899


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcc--eeecccCCccEEec-CCCceEEecccccccccC
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLG--VVYRDLKPENVLVR-DDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~g--IVHRDLKPeNILl~-~~g~vKL~DFGlA~~~~~  485 (730)
                      |||||+||+|.+++.+.  ..+++..++.|+.||+.||+|||++|  ||||||||+||||+ .++++||+|||+|+... 
T Consensus        90 vmE~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~-  166 (270)
T d1t4ha_          90 VTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR-  166 (270)
T ss_dssp             EEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC-
T ss_pred             EEeCCCCCcHHHHHhcc--ccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceecc-
Confidence            99999999999988765  57999999999999999999999999  99999999999996 47999999999984210 


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                                                                                                   ...
T Consensus       167 -----------------------------------------------------------------------------~~~  169 (270)
T d1t4ha_         167 -----------------------------------------------------------------------------ASF  169 (270)
T ss_dssp             -----------------------------------------------------------------------------TTS
T ss_pred             -----------------------------------------------------------------------------CCc
Confidence                                                                                         001


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-cccCCCCCCCChhHHHHHHh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-QLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-~~~~p~~~~~s~~~~dLI~~  644 (730)
                      ..+.+||+.|||||++.+ .|+.++|||||||+||||++|+.||.+..+...+.+.+.. ..........+.++++||.+
T Consensus       170 ~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~  248 (270)
T d1t4ha_         170 AKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEG  248 (270)
T ss_dssp             BEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHH
T ss_pred             cCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcCCCCcccCccCCHHHHHHHHH
Confidence            234689999999999876 5999999999999999999999999876665555443332 22222334578899999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      ||.+||++|||    ++|+|+||||+
T Consensus       249 ~l~~dp~~R~s----~~ell~Hp~fk  270 (270)
T d1t4ha_         249 CIRQNKDERYS----IKDLLNHAFFQ  270 (270)
T ss_dssp             HSCSSGGGSCC----HHHHHTSGGGC
T ss_pred             HccCCHhHCcC----HHHHhCCcccC
Confidence            99999999999    79999999996

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.8e-55  Score=461.66  Aligned_cols=259  Identities=31%  Similarity=0.444  Sum_probs=225.6

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh------hHHHHHHHHHHHHHHHhcC-CCCCccccccccc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA------SRKKLTRAQTEREILQLLD-HPFLPTLYTHFET  402 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~------~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~  402 (730)
                      .++|++++.||+|+||+||+|+++.+++.||||++++....      .....+.+.+|+.+|+.++ ||||++++++|++
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~   81 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   81 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence            36899999999999999999999999999999999875432      1334467889999999996 9999999999999


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      ++.+|||||||+||+|.+++...  +.+++.+++.|++||+.||+|||++|||||||||+|||++.++++||+|||+++.
T Consensus        82 ~~~~~ivmE~~~~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~  159 (277)
T d1phka_          82 NTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQ  159 (277)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             CcceEEEEEcCCCchHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeE
Confidence            99999999999999999998765  5799999999999999999999999999999999999999999999999999854


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      ...                                                                             
T Consensus       160 ~~~-----------------------------------------------------------------------------  162 (277)
T d1phka_         160 LDP-----------------------------------------------------------------------------  162 (277)
T ss_dssp             CCT-----------------------------------------------------------------------------
T ss_pred             ccC-----------------------------------------------------------------------------
Confidence            210                                                                             


Q ss_pred             cccccccccCcccCChhhhcc------CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC--CCCCC
Q 004790          563 AARSMSFVGTHEYLAPEIIKG------EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP--DSPAT  634 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g------~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p--~~~~~  634 (730)
                      .......+||+.|+|||++.+      ..|+.++|||||||+||||++|+.||.+.+....+.++..+...++  ....+
T Consensus       163 ~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  242 (277)
T d1phka_         163 GEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDY  242 (277)
T ss_dssp             TCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGS
T ss_pred             CCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCCcccccC
Confidence            001123589999999999974      3468899999999999999999999999877777777776655444  34578


Q ss_pred             ChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          635 SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       635 s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |.++++||.+||..||.+||+    ++|+|+||||+.
T Consensus       243 s~~~~~li~~~L~~~p~~R~s----~~eil~h~~~~~  275 (277)
T d1phka_         243 SDTVKDLVSRFLVVQPQKRYT----AEEALAHPFFQQ  275 (277)
T ss_dssp             CHHHHHHHHHHCCSSGGGSCC----HHHHTTSGGGCT
T ss_pred             CHHHHHHHHHHccCChhHCcC----HHHHHcCHHHHH
Confidence            999999999999999999999    799999999985

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-55  Score=472.38  Aligned_cols=256  Identities=23%  Similarity=0.373  Sum_probs=225.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|++++.||+|+||+||+|+++.+++.||||++++....    ...+.+|+++|+.++|||||+++++|++++++|||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~----~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lv   79 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD----QVLVKKEISILNIARHRNILHLHESFESMEELVMI   79 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHH----HHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCccc----HHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            47899999999999999999999999999999999876432    24578999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCC--CceEEecccccccccCCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDD--GHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~--g~vKL~DFGlA~~~~~~~  487 (730)
                      ||||+||+|.+++... +..+++.+++.|+.||+.||+|||++||+||||||+||||+.+  +++||+|||+++....  
T Consensus        80 mE~~~gg~L~~~i~~~-~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~--  156 (321)
T d1tkia_          80 FEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP--  156 (321)
T ss_dssp             ECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCT--
T ss_pred             EecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhcccc--
Confidence            9999999999988754 3469999999999999999999999999999999999999854  5899999999854210  


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                 .....
T Consensus       157 ---------------------------------------------------------------------------~~~~~  161 (321)
T d1tkia_         157 ---------------------------------------------------------------------------GDNFR  161 (321)
T ss_dssp             ---------------------------------------------------------------------------TCEEE
T ss_pred             ---------------------------------------------------------------------------CCccc
Confidence                                                                                       00122


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCC--CCCChhHHHHHHhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDS--PATSYASRDLIRGL  645 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~--~~~s~~~~dLI~~l  645 (730)
                      +.+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.+..+.+.+|....+.++..  ..++.++++||++|
T Consensus       162 ~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  241 (321)
T d1tkia_         162 LLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRL  241 (321)
T ss_dssp             EEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTT
T ss_pred             ccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999988877787888777666542  46799999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          646 LVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      |++||.+|||    ++|+++||||+.
T Consensus       242 L~~dp~~R~s----~~eil~hp~~~~  263 (321)
T d1tkia_         242 LVKERKSRMT----ASEALQHPWLKQ  263 (321)
T ss_dssp             SCSSGGGSCC----HHHHHHSHHHHS
T ss_pred             ccCChhHCcC----HHHHhcCHhhcc
Confidence            9999999999    799999999974

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-55  Score=463.39  Aligned_cols=256  Identities=27%  Similarity=0.363  Sum_probs=208.4

Q ss_pred             EEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH--HHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeee
Q 004790          335 LLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR--KKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEY  412 (730)
Q Consensus       335 il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~--~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy  412 (730)
                      .+++||+|+||+||+|+++.+++.||||++++......  .....+.+|+++|+.++|||||+++++|.+++++||||||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            57899999999999999999999999999976543322  2235688999999999999999999999999999999999


Q ss_pred             cCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCccccc
Q 004790          413 CPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKT  492 (730)
Q Consensus       413 ~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~  492 (730)
                      |.|+++..++...  ..+++..++.|++||+.||+|||++|||||||||+|||++.+|.+||+|||+|+.....      
T Consensus        82 ~~~~~~~~~~~~~--~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~------  153 (299)
T d1ua2a_          82 METDLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSP------  153 (299)
T ss_dssp             CSEEHHHHHTTCC--SSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSC------
T ss_pred             hcchHHhhhhhcc--cCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCC------
Confidence            9988887665543  67999999999999999999999999999999999999999999999999998532100      


Q ss_pred             CCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccC
Q 004790          493 SSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGT  572 (730)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT  572 (730)
                                                                                            .....+.+||
T Consensus       154 ----------------------------------------------------------------------~~~~~~~~gt  163 (299)
T d1ua2a_         154 ----------------------------------------------------------------------NRAYTHQVVT  163 (299)
T ss_dssp             ----------------------------------------------------------------------CCCCCCSCCC
T ss_pred             ----------------------------------------------------------------------cccccceecC
Confidence                                                                                  0011235899


Q ss_pred             cccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc--------------------cCCC-
Q 004790          573 HEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL--------------------RFPD-  630 (730)
Q Consensus       573 ~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~--------------------~~p~-  630 (730)
                      +.|+|||++.+. .|+.++|||||||++|||++|++||.+.+..+++.++.....                    .++. 
T Consensus       164 ~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (299)
T d1ua2a_         164 RWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGI  243 (299)
T ss_dssp             CTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCC
T ss_pred             hhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCC
Confidence            999999999765 579999999999999999999999998766555544331100                    0010 


Q ss_pred             -----CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          631 -----SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       631 -----~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                           ....+.+++|||.+||++||++|||    |+|+|+||||++.
T Consensus       244 ~~~~~~~~~s~~~~dll~~~L~~dP~~R~s----a~e~L~Hp~f~~~  286 (299)
T d1ua2a_         244 PLHHIFSAAGDDLLDLIQGLFLFNPCARIT----ATQALKMKYFSNR  286 (299)
T ss_dssp             CHHHHCTTCCHHHHHHHHHHHCSSTTTSCC----HHHHHTSGGGTSS
T ss_pred             ChHHhcccCCHHHHHHHHHHccCChhhCcC----HHHHhCCHhhCCC
Confidence                 1346789999999999999999999    7999999999863

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-55  Score=459.42  Aligned_cols=262  Identities=28%  Similarity=0.427  Sum_probs=213.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +++|++++.||+|+||+||+|+++.+++.||||++++... .......+.+|+++|+.++|||||+++++|+++..+|+|
T Consensus         1 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv   79 (298)
T d1gz8a_           1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV   79 (298)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhc-ChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEE
Confidence            4789999999999999999999999999999999976542 223456788999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||||.++ +..++.......+++..++.|+.||+.||.|||++|||||||||+|||++.++++||+|||+|+.....   
T Consensus        80 ~e~~~~~-~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~---  155 (298)
T d1gz8a_          80 FEFLHQD-LKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP---  155 (298)
T ss_dssp             EECCSEE-HHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCC---
T ss_pred             EeecCCc-hhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCC---
Confidence            9999654 444444444567999999999999999999999999999999999999999999999999999543110   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                               .......
T Consensus       156 -------------------------------------------------------------------------~~~~~~~  162 (298)
T d1gz8a_         156 -------------------------------------------------------------------------VRTYTHE  162 (298)
T ss_dssp             -------------------------------------------------------------------------SBCTTCC
T ss_pred             -------------------------------------------------------------------------cccceee
Confidence                                                                                     0011235


Q ss_pred             ccCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc------------------ccCCC
Q 004790          570 VGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ------------------LRFPD  630 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~------------------~~~p~  630 (730)
                      +||+.|+|||++....+ +.++|||||||++|+|++|+.||.+.+..+.+.++....                  ..++.
T Consensus       163 ~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (298)
T d1gz8a_         163 VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPK  242 (298)
T ss_dssp             BCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCC
T ss_pred             cccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhcccccccccccccccc
Confidence            89999999999988775 789999999999999999999998876555444332110                  00110


Q ss_pred             ---------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          631 ---------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       631 ---------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                               ....+.+++|||++||.+||++|||    ++|+|+||||++++
T Consensus       243 ~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t----~~ell~H~ff~~~~  290 (298)
T d1gz8a_         243 WARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRIS----AKAALAHPFFQDVT  290 (298)
T ss_dssp             CCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCC----HHHHHTSGGGTTCC
T ss_pred             ccccchhhhccCCCHHHHHHHHHHccCChhHCcC----HHHHhCCHhhccCC
Confidence                     1356788999999999999999999    79999999999763

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-55  Score=468.68  Aligned_cols=253  Identities=27%  Similarity=0.418  Sum_probs=213.3

Q ss_pred             cCCeEEEe-EEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHH-hcCCCCCccccccccc----c
Q 004790          330 MSHFRLLK-RLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQ-LLDHPFLPTLYTHFET----D  403 (730)
Q Consensus       330 ~~~y~il~-~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~-~L~HPnIV~L~~~f~~----~  403 (730)
                      .++|++++ .||+|+||+||+|+++.+++.||||++++.        ..+++|++++. .++|||||+++++|++    +
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~--------~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~   81 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYENLYAGR   81 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc--------HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCC
Confidence            57899986 599999999999999999999999999754        23567999865 4589999999999975    5


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---CCceEEeccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---DGHIMLSDFDLS  480 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~g~vKL~DFGlA  480 (730)
                      ..+|||||||+||+|.+++.......|++.+++.|++||+.||+|||++||+||||||+|||++.   ++++||+|||+|
T Consensus        82 ~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a  161 (335)
T d2ozaa1          82 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA  161 (335)
T ss_dssp             EEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             CEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccccccccccccee
Confidence            78999999999999999988765568999999999999999999999999999999999999985   568999999998


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +.....                                                                          
T Consensus       162 ~~~~~~--------------------------------------------------------------------------  167 (335)
T d2ozaa1         162 KETTSH--------------------------------------------------------------------------  167 (335)
T ss_dssp             EECCCC--------------------------------------------------------------------------
T ss_pred             eeccCC--------------------------------------------------------------------------
Confidence            542100                                                                          


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcccee----eeecccccCCCC--CCC
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF----NVVGQQLRFPDS--PAT  634 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~----~i~~~~~~~p~~--~~~  634 (730)
                         ....+.+||+.|||||++.+..|+.++|||||||+||+|++|++||.+.+......    ++....+.+|..  ..+
T Consensus       168 ---~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  244 (335)
T d2ozaa1         168 ---NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEV  244 (335)
T ss_dssp             ---CCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHS
T ss_pred             ---CccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccC
Confidence               01123589999999999999999999999999999999999999998876544332    344455555543  357


Q ss_pred             ChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          635 SYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       635 s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                      +.++++||++||++||.+||+    +.|+++||||..
T Consensus       245 s~~~~~li~~~L~~dP~~R~s----~~eil~hp~~~~  277 (335)
T d2ozaa1         245 SEEVKMLIRNLLKTEPTQRMT----ITEFMNHPWIMQ  277 (335)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCC----HHHHHHSHHHHT
T ss_pred             CHHHHHHHHHHccCChhHCcC----HHHHHcCHHhhC
Confidence            899999999999999999999    799999999964

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-54  Score=460.60  Aligned_cols=284  Identities=39%  Similarity=0.719  Sum_probs=234.5

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEE---CCCCeEEEEEEeehhhhh-hHHHHHHHHHHHHHHHhcCC-CCCccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSEL---SSTRCYFAMKVMDKASLA-SRKKLTRAQTEREILQLLDH-PFLPTLYTHFET  402 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~---~~t~~~vAvKvi~k~~~~-~~~~~~~~~~E~~IL~~L~H-PnIV~L~~~f~~  402 (730)
                      +++++|++++.||+|+||+||+|++   +.+|+.||||++++.... .....+.+.+|+++|+.++| |||++++++|++
T Consensus        21 ~~l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~  100 (322)
T d1vzoa_          21 VGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT  100 (322)
T ss_dssp             CCGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE
T ss_pred             cchhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeecc
Confidence            4568899999999999999999987   457899999999765432 12234557889999999976 899999999999


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      ...+|+||||+.||+|..++...  +.+++..++.+++||+.||+|||++|||||||||+||||+.+|.+||+|||+|+.
T Consensus       101 ~~~~~~v~e~~~~~~L~~~i~~~--~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~  178 (322)
T d1vzoa_         101 ETKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKE  178 (322)
T ss_dssp             TTEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred             CCceeeeeecccccHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhh
Confidence            99999999999999999988766  5788999999999999999999999999999999999999999999999999854


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      +...                                                                           .
T Consensus       179 ~~~~---------------------------------------------------------------------------~  183 (322)
T d1vzoa_         179 FVAD---------------------------------------------------------------------------E  183 (322)
T ss_dssp             CCGG---------------------------------------------------------------------------G
T ss_pred             hccc---------------------------------------------------------------------------c
Confidence            3110                                                                           0


Q ss_pred             cccccccccCcccCChhhhccCC--CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc--cCCCCCCCChhH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEG--HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL--RFPDSPATSYAS  638 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~--~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~--~~p~~~~~s~~~  638 (730)
                      .....+..||+.|+|||.+.+..  ++.++|||||||+||||++|+.||.+.+.......+.....  ..+....++.++
T Consensus       184 ~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  263 (322)
T d1vzoa_         184 TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALA  263 (322)
T ss_dssp             GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCHHH
T ss_pred             cccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCCCCcccCCHHH
Confidence            11223468999999999998764  67899999999999999999999998877666655544332  223334689999


Q ss_pred             HHHHHhhhcCCCCCcCCch-hcHHHHHcCCCCCCCCcchhc--cCCCCCCCCC
Q 004790          639 RDLIRGLLVKEPQHRLGVK-RGATEIKQHPFFEGVNWALIR--CSTPPEVPRP  688 (730)
Q Consensus       639 ~dLI~~lL~~DP~~R~t~~-~~a~elL~HPfF~~v~w~~~r--~~~pp~~p~p  688 (730)
                      ++||.+||.+||++|+++. ..++|+++||||++++|..+.  ...+|.+|..
T Consensus       264 ~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~i~~~~l~~~~~~~p~~p~~  316 (322)
T d1vzoa_         264 KDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVI  316 (322)
T ss_dssp             HHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCC
T ss_pred             HHHHHHHcccCHHHcCCCCcccHHHHHcCHhhcCCCHHHHHhCCCCcCCCCCC
Confidence            9999999999999999753 348999999999999999773  4455665654

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-54  Score=450.99  Aligned_cols=262  Identities=24%  Similarity=0.335  Sum_probs=211.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCC-CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc---CCCCCcccccccc----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSST-RCYFAMKVMDKASLASRKKLTRAQTEREILQLL---DHPFLPTLYTHFE----  401 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t-~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L---~HPnIV~L~~~f~----  401 (730)
                      .++|+++++||+|+||+||+|++..+ ++.||||++++..... .....+.+|+.+|+.|   +||||++++++|.    
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~   84 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE-GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   84 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT-SCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccc-hHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccc
Confidence            36899999999999999999999765 6789999997643322 1222355788877765   8999999999985    


Q ss_pred             -ccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccc
Q 004790          402 -TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLS  480 (730)
Q Consensus       402 -~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA  480 (730)
                       .+..+|++||||.++++..... .....+++..++.|++||+.||+|||++|||||||||+|||++.+|.+||+|||++
T Consensus        85 ~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~  163 (305)
T d1blxa_          85 DRETKLTLVFEHVDQDLTTYLDK-VPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA  163 (305)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHHH-SCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred             ccCceEEEEEEeccCCchhhhhh-ccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhh
Confidence             4567899999998877654433 33467999999999999999999999999999999999999999999999999997


Q ss_pred             ccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccc
Q 004790          481 LRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAE  560 (730)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  560 (730)
                      +...                                                                            
T Consensus       164 ~~~~----------------------------------------------------------------------------  167 (305)
T d1blxa_         164 RIYS----------------------------------------------------------------------------  167 (305)
T ss_dssp             CCCC----------------------------------------------------------------------------
T ss_pred             hhhc----------------------------------------------------------------------------
Confidence            4210                                                                            


Q ss_pred             cccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc----------------
Q 004790          561 PTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ----------------  624 (730)
Q Consensus       561 ~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~----------------  624 (730)
                       ........+||+.|+|||++.+..|+.++|||||||++|||++|++||.+.+..+.+.+++..                
T Consensus       168 -~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  246 (305)
T d1blxa_         168 -FQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALP  246 (305)
T ss_dssp             -GGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSC
T ss_pred             -ccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccch
Confidence             001123458999999999999999999999999999999999999999987655444333210                


Q ss_pred             ---------cccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          625 ---------QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       625 ---------~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                               .........++.+++|||++||++||++|||    ++|+|+||||+++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~s----a~e~L~Hpff~~i~~  301 (305)
T d1blxa_         247 RQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRIS----AYSALSHPYFQDLER  301 (305)
T ss_dssp             GGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCC----HHHHHTSGGGTTCCC
T ss_pred             hhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcC----HHHHhcChhhcCchh
Confidence                     0000112456889999999999999999999    799999999999875

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-54  Score=451.90  Aligned_cols=251  Identities=28%  Similarity=0.385  Sum_probs=211.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhH---HHHHHHHHHHHHHHhcC--CCCCccccccccccce
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASR---KKLTRAQTEREILQLLD--HPFLPTLYTHFETDRF  405 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~---~~~~~~~~E~~IL~~L~--HPnIV~L~~~f~~~~~  405 (730)
                      ++|++.+.||+|+||+||+|+++.+++.||||++++......   ....++.+|+.+|+.++  |||||+++++|++++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            679999999999999999999999999999999987543321   11233568999999986  8999999999999999


Q ss_pred             eeEEeeecCC-CCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-CCceEEecccccccc
Q 004790          406 SCLVMEYCPG-GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-DGHIMLSDFDLSLRC  483 (730)
Q Consensus       406 l~LVmEy~~G-GsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-~g~vKL~DFGlA~~~  483 (730)
                      +|+||||+.+ ++|..++...  ..+++..++.|+.||+.||+|||++|||||||||+|||++. ++.+||+|||+|+..
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~--~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~  161 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALL  161 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             EEEEEEeccCcchHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceec
Confidence            9999999976 5677766654  57999999999999999999999999999999999999985 479999999998431


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                              
T Consensus       162 ~~------------------------------------------------------------------------------  163 (273)
T d1xwsa_         162 KD------------------------------------------------------------------------------  163 (273)
T ss_dssp             CS------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             ccccccccCcccCChhhhccCCC-CCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGH-GSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~-~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      ....+++||+.|+|||++.+..+ +.++|||||||+||||++|+.||.+.+      ++......++  ..+|.++++||
T Consensus       164 ~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~------~i~~~~~~~~--~~~s~~~~~li  235 (273)
T d1xwsa_         164 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQVFFR--QRVSSECQHLI  235 (273)
T ss_dssp             SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHHCCCCCS--SCCCHHHHHHH
T ss_pred             ccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch------HHhhcccCCC--CCCCHHHHHHH
Confidence            01124589999999999998875 677999999999999999999997642      2334444444  46899999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      ++||.+||++|||    ++|+++||||+++.
T Consensus       236 ~~~L~~dp~~R~s----~~eil~hp~~~~~~  262 (273)
T d1xwsa_         236 RWCLALRPSDRPT----FEEIQNHPWMQDVL  262 (273)
T ss_dssp             HHHTCSSGGGSCC----HHHHHTSGGGSSCC
T ss_pred             HHHccCCHhHCcC----HHHHhcCHhhCCCC
Confidence            9999999999999    79999999999753

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-53  Score=449.95  Aligned_cols=257  Identities=19%  Similarity=0.269  Sum_probs=221.1

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccce
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRF  405 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~  405 (730)
                      +++..++|+++++||+|+||+||+|+++.+++.||||++++....    .+.+++|+++|+.++|||||+++++|.+++.
T Consensus        12 wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~----~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~   87 (287)
T d1opja_          12 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME----VEEFLKEAAVMKEIKHPNLVQLLGVCTREPP   87 (287)
T ss_dssp             TBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSC----HHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             cEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccch----HHHHHHHHHHHHhCCCCCEecCCccEeeCCe
Confidence            456678999999999999999999999999999999999765432    3457899999999999999999999999999


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|||||||++|+|..++.......+++..++.|+.||+.||+|||++|||||||||+||||+.+|++||+|||+|+....
T Consensus        88 ~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~  167 (287)
T d1opja_          88 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG  167 (287)
T ss_dssp             CEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCS
T ss_pred             eEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCC
Confidence            99999999999999988776667899999999999999999999999999999999999999999999999999853210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      .                                                                           ....
T Consensus       168 ~---------------------------------------------------------------------------~~~~  172 (287)
T d1opja_         168 D---------------------------------------------------------------------------TYTA  172 (287)
T ss_dssp             S---------------------------------------------------------------------------SSEE
T ss_pred             C---------------------------------------------------------------------------Ccee
Confidence            0                                                                           0001


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhh
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGL  645 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~l  645 (730)
                      .....||+.|+|||++.+..|+.++|||||||++|||++|..||....+...+.+++....+.+.+..++.++++||.+|
T Consensus       173 ~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~c  252 (287)
T d1opja_         173 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRAC  252 (287)
T ss_dssp             ETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHH
T ss_pred             eccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCCCCccchHHHHHHHHHH
Confidence            12346899999999999999999999999999999999977776655555666666666666666678899999999999


Q ss_pred             hcCCCCCcCCchhcHHHHHc
Q 004790          646 LVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       646 L~~DP~~R~t~~~~a~elL~  665 (730)
                      |..||++||+    +++|++
T Consensus       253 l~~dP~~Rps----~~ei~~  268 (287)
T d1opja_         253 WQWNPSDRPS----FAEIHQ  268 (287)
T ss_dssp             TCSSGGGSCC----HHHHHH
T ss_pred             cCCCHhHCcC----HHHHHH
Confidence            9999999999    567754

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-53  Score=452.99  Aligned_cols=260  Identities=18%  Similarity=0.264  Sum_probs=219.1

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCe-----EEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRC-----YFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHF  400 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~-----~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f  400 (730)
                      ++..++|++++.||+|+||+||+|++..+++     .||+|++.+..  .......+.+|+.+|+.+ +|||||+++++|
T Consensus        33 ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~  110 (325)
T d1rjba_          33 EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA--DSSEREALMSELKMMTQLGSHENIVNLLGAC  110 (325)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEecccc--CHHHHHHHHHHHHHHHHhcCCCcEeEEEEEE
Confidence            3556789999999999999999999876543     69999986543  223445688999999988 899999999999


Q ss_pred             cccceeeEEeeecCCCCccccccccCC---------------------CCccHHHHHHhHHHHHHHHHHhHhcceeeccc
Q 004790          401 ETDRFSCLVMEYCPGGDLHTLRQRQPG---------------------KHFSEYAARFYAAEVLLALEYLHMLGVVYRDL  459 (730)
Q Consensus       401 ~~~~~l~LVmEy~~GGsL~~ll~~~~~---------------------~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDL  459 (730)
                      .+.+.+|||||||+||+|.++++....                     ..+++..++.|+.||+.||+|||++|||||||
T Consensus       111 ~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDl  190 (325)
T d1rjba_         111 TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDL  190 (325)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTC
T ss_pred             eeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccC
Confidence            999999999999999999998865422                     35889999999999999999999999999999


Q ss_pred             CCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccc
Q 004790          460 KPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKK  539 (730)
Q Consensus       460 KPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~  539 (730)
                      ||+|||++.++++||+|||+|+......                                                    
T Consensus       191 Kp~Nill~~~~~~Kl~DFGla~~~~~~~----------------------------------------------------  218 (325)
T d1rjba_         191 AARNVLVTHGKVVKICDFGLARDIMSDS----------------------------------------------------  218 (325)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCGGGCT----------------------------------------------------
T ss_pred             chhccccccCCeEEEeeccccccccCCC----------------------------------------------------
Confidence            9999999999999999999995421100                                                    


Q ss_pred             cCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccce
Q 004790          540 TRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATL  618 (730)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l  618 (730)
                                            ......+.+||+.|||||++.+..|+.++|||||||+||||++ |+.||.+.+....+
T Consensus       219 ----------------------~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~~  276 (325)
T d1rjba_         219 ----------------------NYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANF  276 (325)
T ss_dssp             ----------------------TSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHH
T ss_pred             ----------------------ceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHHHH
Confidence                                  0011124578999999999999999999999999999999997 99999998877777


Q ss_pred             eeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       619 ~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      .+++....+++.+..++.++++||.+||+.||++|||    ++||++|
T Consensus       277 ~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt----~~ei~~~  320 (325)
T d1rjba_         277 YKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPS----FPNLTSF  320 (325)
T ss_dssp             HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcC----HHHHHHH
Confidence            7887777777777788999999999999999999999    5777765

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.5e-53  Score=442.32  Aligned_cols=261  Identities=24%  Similarity=0.376  Sum_probs=214.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc----e
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR----F  405 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~----~  405 (730)
                      .++|++++.||+|+||+||+|++..+++.||||++++..........++.+|+++|+.++||||+++++++.++.    .
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            367999999999999999999999999999999998877666677788999999999999999999999997643    4


Q ss_pred             eeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccC
Q 004790          406 SCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAV  485 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~  485 (730)
                      +|||||||+|++|..++...  +.+++.+++.|+.||+.||+|||++|||||||||+||||+.++.++|+|||++.....
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~--~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~  163 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIAD  163 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC-
T ss_pred             EEEEEECCCCCEehhhhccc--CCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhcc
Confidence            89999999999999877665  5799999999999999999999999999999999999999999999999998743211


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      ...                                                                         ....
T Consensus       164 ~~~-------------------------------------------------------------------------~~~~  170 (277)
T d1o6ya_         164 SGN-------------------------------------------------------------------------SVTQ  170 (277)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc-------------------------------------------------------------------------cccc
Confidence            000                                                                         0112


Q ss_pred             ccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC--CCCCCChhHHHHHH
Q 004790          566 SMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP--DSPATSYASRDLIR  643 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p--~~~~~s~~~~dLI~  643 (730)
                      ..+.+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+..+.+.+++......+  ....+|.++++||.
T Consensus       171 ~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~  250 (277)
T d1o6ya_         171 TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVL  250 (277)
T ss_dssp             --------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHH
T ss_pred             cccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHH
Confidence            2356899999999999999999999999999999999999999998877776666665544433  23568999999999


Q ss_pred             hhhcCCCCCcCCchhcHHHHHcCCCC
Q 004790          644 GLLVKEPQHRLGVKRGATEIKQHPFF  669 (730)
Q Consensus       644 ~lL~~DP~~R~t~~~~a~elL~HPfF  669 (730)
                      +||.+||.+||+.   ++++ .|+|.
T Consensus       251 ~~L~~dp~~R~~s---a~~l-~~~l~  272 (277)
T d1o6ya_         251 KALAKNPENRYQT---AAEM-RADLV  272 (277)
T ss_dssp             HHTCSSGGGSCSS---HHHH-HHHHH
T ss_pred             HHccCCHhHCHhH---HHHH-HHHHH
Confidence            9999999999952   4444 34443

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.5e-53  Score=444.77  Aligned_cols=258  Identities=23%  Similarity=0.356  Sum_probs=211.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +++|+++++||+|+||+||+|+++ +++.||||++++.... .....++.+|+.+|+.++||||++++++|.+++..|+|
T Consensus         1 ~~~Y~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~   78 (286)
T d1ob3a_           1 MEKYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKED-EGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLV   78 (286)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEET-TSCEEEEEEECCSSGG-GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEE
T ss_pred             CCCceeccEEecCCCcEEEEEEeC-CCCEEEEEEEehhhcC-hHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEE
Confidence            478999999999999999999986 6789999999765432 23346788999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+.++.+..+.+..  +.+++..++.|+.||+.||+|||++|||||||||+||||+.+|.+||+|||+|.....    
T Consensus        79 ~e~~~~~~~~~~~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~----  152 (286)
T d1ob3a_          79 FEHLDQDLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGI----  152 (286)
T ss_dssp             EECCSEEHHHHHHTST--TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred             EEeehhhhHHHHHhhc--CCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceeccc----
Confidence            9999887777765544  6799999999999999999999999999999999999999999999999999854210    


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              ........
T Consensus       153 ------------------------------------------------------------------------~~~~~~~~  160 (286)
T d1ob3a_         153 ------------------------------------------------------------------------PVRKYTHE  160 (286)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------------------------------------------------------Ccccccee
Confidence                                                                                    00112235


Q ss_pred             ccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccc----------------------
Q 004790          570 VGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQL----------------------  626 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~----------------------  626 (730)
                      +||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+.+..+.+.++.....                      
T Consensus       161 ~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (286)
T d1ob3a_         161 IVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTV  240 (286)
T ss_dssp             -CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCC
T ss_pred             cccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhccccccc
Confidence            7999999999998765 69999999999999999999999987765444433221000                      


Q ss_pred             --c---CCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          627 --R---FPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       627 --~---~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                        .   .......+.+++|||++||++||++|||    ++|+|+||||++
T Consensus       241 ~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s----~~ell~Hp~f~~  286 (286)
T d1ob3a_         241 YEPLPWESFLKGLDESGIDLLSKMLKLDPNQRIT----AKQALEHAYFKE  286 (286)
T ss_dssp             CCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCC----HHHHHTSGGGGC
T ss_pred             ccCcchhhhcccCCHHHHHHHHHHccCChhHCcC----HHHHhcCcccCc
Confidence              0   0012456889999999999999999999    799999999974

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-52  Score=451.16  Aligned_cols=257  Identities=29%  Similarity=0.414  Sum_probs=208.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc-----
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR-----  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~-----  404 (730)
                      .++|++++.||+|+||+||+|+++.+++.||||++++... .....+.+.+|+++|+.++|||||+++++|...+     
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~   95 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF   95 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhc-ChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccccc
Confidence            4789999999999999999999999999999999976543 4456678899999999999999999999997654     


Q ss_pred             -eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          405 -FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       405 -~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                       .+||||||| |.+|..+.+.   ..|++..++.|++||+.||+|||++|||||||||+|||++.++++||+|||+|+..
T Consensus        96 ~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~  171 (346)
T d1cm8a_          96 TDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQA  171 (346)
T ss_dssp             CCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             ceEEEEEecc-cccHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceecc
Confidence             579999999 7788777654   46999999999999999999999999999999999999999999999999998532


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                              
T Consensus       172 ~~------------------------------------------------------------------------------  173 (346)
T d1cm8a_         172 DS------------------------------------------------------------------------------  173 (346)
T ss_dssp             CS------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             ccccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccc-----------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQ-----------------  625 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~-----------------  625 (730)
                       .....+||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+.+....+..+....                 
T Consensus       174 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (346)
T d1cm8a_         174 -EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAK  252 (346)
T ss_dssp             -SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHH
T ss_pred             -ccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhh
Confidence             012357999999999998754 6899999999999999999999998875544332221100                 


Q ss_pred             ------ccC------CCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          626 ------LRF------PDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       626 ------~~~------p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                            ...      ......+.++.|||++||.+||.+|||    ++|+|+||||+.+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~t----a~eiL~Hp~f~~~~~  309 (346)
T d1cm8a_         253 NYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVT----AGEALAHPYFESLHD  309 (346)
T ss_dssp             HHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCC----HHHHHHSGGGTTTC-
T ss_pred             hhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcC----HHHHhcChhhCcCCC
Confidence                  000      012356889999999999999999999    799999999998764

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=5.6e-52  Score=442.64  Aligned_cols=254  Identities=25%  Similarity=0.426  Sum_probs=208.5

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccc--cccee
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFE--TDRFS  406 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~--~~~~l  406 (730)
                      .++|+++++||+|+||+||+|+++.+++.||||++++..      .+++.+|+++|+.+ +||||++++++|.  ....+
T Consensus        34 ~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~------~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~  107 (328)
T d3bqca1          34 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK------KKKIKREIKILENLRGGPNIITLADIVKDPVSRTP  107 (328)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC------HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSE
T ss_pred             CcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH------HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCce
Confidence            468999999999999999999999999999999997643      24578899999999 5999999999987  45679


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC-ceEEecccccccccC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG-HIMLSDFDLSLRCAV  485 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g-~vKL~DFGlA~~~~~  485 (730)
                      |+|||||.+++|..+.     +.+++..++.+++||+.||+|||++|||||||||+||||+.++ .+||+|||+|+....
T Consensus       108 ~~v~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~  182 (328)
T d3bqca1         108 ALVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP  182 (328)
T ss_dssp             EEEEECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCT
T ss_pred             eEEEeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccC
Confidence            9999999999997763     3599999999999999999999999999999999999998755 699999999854210


Q ss_pred             CCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccc
Q 004790          486 SPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAAR  565 (730)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  565 (730)
                      .                                                                             ..
T Consensus       183 ~-----------------------------------------------------------------------------~~  185 (328)
T d3bqca1         183 G-----------------------------------------------------------------------------QE  185 (328)
T ss_dssp             T-----------------------------------------------------------------------------CC
T ss_pred             C-----------------------------------------------------------------------------Cc
Confidence            0                                                                             01


Q ss_pred             ccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccc-eeee----------------------
Q 004790          566 SMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRAT-LFNV----------------------  621 (730)
Q Consensus       566 ~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~-l~~i----------------------  621 (730)
                      ....+||+.|+|||++.+.. |+.++|||||||++|||++|+.||........ ...+                      
T Consensus       186 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~  265 (328)
T d3bqca1         186 YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDP  265 (328)
T ss_dssp             CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCG
T ss_pred             ccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCc
Confidence            12357999999999998765 79999999999999999999999976543211 1000                      


Q ss_pred             -----ec--------ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCcc
Q 004790          622 -----VG--------QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWA  675 (730)
Q Consensus       622 -----~~--------~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w~  675 (730)
                           ..        .....+....++.+++|||++||++||.+|||    ++|+|+||||+.+.|+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~t----a~e~L~Hp~F~~v~~~  328 (328)
T d3bqca1         266 RFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLT----AREAMEHPYFYTVVKD  328 (328)
T ss_dssp             GGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGTTSCCC
T ss_pred             ccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcC----HHHHhcCcccCCCCCC
Confidence                 00        00111122346789999999999999999999    7999999999999984

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-52  Score=438.33  Aligned_cols=260  Identities=21%  Similarity=0.318  Sum_probs=213.2

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      ++++..++|++++.||+|+||+||+|+++ ++..||||++++....    .+.+.+|+++|+.++|||||++++++.+ +
T Consensus         7 ~wei~~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~~~~~~~~----~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~   80 (272)
T d1qpca_           7 EWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSMS----PDAFLAEANLMKQLQHQRLVRLYAVVTQ-E   80 (272)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSSC----HHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             CeecCHHHeEEeEEEecCCCcEEEEEEEC-CCCEEEEEEEccCcCC----HHHHHHHHHHHHhCCCCCEeEEEeeecc-C
Confidence            34566789999999999999999999986 4678999999765432    2457899999999999999999998765 5


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|||||||++|+|.+++.......+++..+..|+.||+.||.|||++|||||||||+||||+.++++||+|||+|+.+.
T Consensus        81 ~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~  160 (272)
T d1qpca_          81 PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIE  160 (272)
T ss_dssp             SCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred             CeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEcc
Confidence            67999999999999987766555569999999999999999999999999999999999999999999999999996431


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ...                                                                           ..
T Consensus       161 ~~~---------------------------------------------------------------------------~~  165 (272)
T d1qpca_         161 DNE---------------------------------------------------------------------------YT  165 (272)
T ss_dssp             SSC---------------------------------------------------------------------------EE
T ss_pred             CCc---------------------------------------------------------------------------cc
Confidence            100                                                                           00


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCC-CCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGK-TPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~-~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ......||+.|||||++.+..|+.++|||||||+||||+||. +||......+.+.. +....+.+.+..++.++++||.
T Consensus       166 ~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~-i~~~~~~~~p~~~~~~l~~li~  244 (272)
T d1qpca_         166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQN-LERGYRMVRPDNCPEELYQLMR  244 (272)
T ss_dssp             CCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHH-HHTTCCCCCCTTCCHHHHHHHH
T ss_pred             cccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHH-HHhcCCCCCcccChHHHHHHHH
Confidence            112347899999999999999999999999999999999954 45554443333333 3334444555678999999999


Q ss_pred             hhhcCCCCCcCCchhcHHHHHc--CCCCC
Q 004790          644 GLLVKEPQHRLGVKRGATEIKQ--HPFFE  670 (730)
Q Consensus       644 ~lL~~DP~~R~t~~~~a~elL~--HPfF~  670 (730)
                      +||..||++|||    +++|++  |+||.
T Consensus       245 ~cl~~~P~~Rpt----~~ei~~~L~~~ft  269 (272)
T d1qpca_         245 LCWKERPEDRPT----FDYLRSVLEDFFT  269 (272)
T ss_dssp             HHTCSSGGGSCC----HHHHHHHHHHHHH
T ss_pred             HHcCCCHhHCcC----HHHHHHHhhhhhh
Confidence            999999999999    578877  77775

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-53  Score=441.64  Aligned_cols=258  Identities=22%  Similarity=0.319  Sum_probs=210.2

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      ++++..++|++++.||+|+||+||+|++++   .||||+++...... ...+.+++|+++|+.++|||||++++++. +.
T Consensus         2 dwei~~~~~~~~~~lG~G~fg~Vy~~~~~~---~vAvK~~~~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~~~~~-~~   76 (276)
T d1uwha_           2 DWEIPDGQITVGQRIGSGSFGTVYKGKWHG---DVAVKMLNVTAPTP-QQLQAFKNEVGVLRKTRHVNILLFMGYST-AP   76 (276)
T ss_dssp             CCBCCTTCCCCCSEEEECSSCEEEEEESSS---EEEEEECCCSSCCT-THHHHHHHHHHHHTTCCCTTBCCEEEEEC-SS
T ss_pred             CcccccccEEEEEEEeeCCCcEEEEEEECC---EEEEEEEEcccCCH-HHHHHHHHHHHHHHhCCCCCEeeeeEEEe-cc
Confidence            345677899999999999999999998754   49999997654333 45677899999999999999999999765 45


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|||||||+||+|.+++... ...+++..+..|+.||+.||+|||++|||||||||+||||+.++++||+|||+|+...
T Consensus        77 ~~~lv~Ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~  155 (276)
T d1uwha_          77 QLAIVTQWCEGSSLYHHLHII-ETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKS  155 (276)
T ss_dssp             SCEEEEECCCEEEHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC--
T ss_pred             EEEEEEecCCCCCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeecc
Confidence            689999999999999988654 2469999999999999999999999999999999999999999999999999985421


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ...                                                                          ...
T Consensus       156 ~~~--------------------------------------------------------------------------~~~  161 (276)
T d1uwha_         156 RWS--------------------------------------------------------------------------GSH  161 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccC--------------------------------------------------------------------------Ccc
Confidence            000                                                                          001


Q ss_pred             cccccccCcccCChhhhccC---CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCC----CCCCCChh
Q 004790          565 RSMSFVGTHEYLAPEIIKGE---GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFP----DSPATSYA  637 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~---~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p----~~~~~s~~  637 (730)
                      ...+.+||+.|||||++.+.   .|+.++|||||||+||||++|+.||.+.+....+..++......|    ....++.+
T Consensus       162 ~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  241 (276)
T d1uwha_         162 QFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKA  241 (276)
T ss_dssp             ----CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHH
T ss_pred             cccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccchHH
Confidence            12345899999999999754   478999999999999999999999998776666555554443333    23467899


Q ss_pred             HHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          638 SRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      +++||.+||..||++|||    +++|++|
T Consensus       242 l~~li~~cl~~dp~~RPt----~~~il~~  266 (276)
T d1uwha_         242 MKRLMAECLKKKRDERPL----FPQILAS  266 (276)
T ss_dssp             HHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcC----HHHHHHH
Confidence            999999999999999999    5677664

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-52  Score=438.13  Aligned_cols=256  Identities=22%  Similarity=0.323  Sum_probs=204.3

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCCe---EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTRC---YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~---~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      .+..++|++.+.||+|+||+||+|+++.+++   .||||++....  .....+.+.+|+++|+.++|||||++++++.++
T Consensus        22 ~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~   99 (299)
T d1jpaa_          22 EIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY--TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKS   99 (299)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS
T ss_pred             hhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECccc--CHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeC
Confidence            4566889999999999999999999987654   58999886543  234456789999999999999999999999999


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      +.+|||||||+||+|..++... .+.+++.++..|+.||+.||.|||++|||||||||+||||+.++++||+|||+|+.+
T Consensus       100 ~~~~iv~Ey~~~g~L~~~~~~~-~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~  178 (299)
T d1jpaa_         100 TPVMIITEFMENGSLDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFL  178 (299)
T ss_dssp             SSCEEEEECCTTEEHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             CEEEEEEEecCCCcceeeeccc-cCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceEc
Confidence            9999999999999999877654 356999999999999999999999999999999999999999999999999999643


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ......                                                                       ...
T Consensus       179 ~~~~~~-----------------------------------------------------------------------~~~  187 (299)
T d1jpaa_         179 EDDTSD-----------------------------------------------------------------------PTY  187 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCCc-----------------------------------------------------------------------cee
Confidence            211000                                                                       000


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      .......||+.|||||++.+..|+.++|||||||+||||++ |+.||.+....+.+..+. ...+.+.+..++.++++||
T Consensus       188 ~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~li  266 (299)
T d1jpaa_         188 TSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIE-QDYRLPPPMDCPSALHQLM  266 (299)
T ss_dssp             --------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHH-TTCCCCCCTTCCHHHHHHH
T ss_pred             eecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCccchHHHHHHH
Confidence            11123468999999999999999999999999999999997 899999876655554443 3445566677899999999


Q ss_pred             HhhhcCCCCCcCCch
Q 004790          643 RGLLVKEPQHRLGVK  657 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~  657 (730)
                      .+||..||.+||++.
T Consensus       267 ~~cl~~~P~~RPs~~  281 (299)
T d1jpaa_         267 LDCWQKDRNHRPKFG  281 (299)
T ss_dssp             HHHTCSSTTTSCCHH
T ss_pred             HHHcCCCHhHCcCHH
Confidence            999999999999954

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-52  Score=445.94  Aligned_cols=254  Identities=27%  Similarity=0.458  Sum_probs=206.7

Q ss_pred             CeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc------ccce
Q 004790          332 HFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE------TDRF  405 (730)
Q Consensus       332 ~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~------~~~~  405 (730)
                      +|+.+++||+|+||+||+|+++.+++.||||++.+...       ...+|+++|+.++||||++++++|.      +..+
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~-------~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~   93 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVY   93 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-------SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch-------HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceE
Confidence            69999999999999999999999999999999976532       1347999999999999999999984      3456


Q ss_pred             eeEEeeecCCCCccccccc-cCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC-ceEEecccccccc
Q 004790          406 SCLVMEYCPGGDLHTLRQR-QPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG-HIMLSDFDLSLRC  483 (730)
Q Consensus       406 l~LVmEy~~GGsL~~ll~~-~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g-~vKL~DFGlA~~~  483 (730)
                      +|||||||+++.+..+... .....+++.+++.|++||+.||+|||++|||||||||+||||+.++ .+||+|||+++.+
T Consensus        94 ~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~  173 (350)
T d1q5ka_          94 LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL  173 (350)
T ss_dssp             EEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEEC
T ss_pred             EEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhc
Confidence            8999999976654444321 2345799999999999999999999999999999999999999875 8999999998542


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                             .
T Consensus       174 ~~-----------------------------------------------------------------------------~  176 (350)
T d1q5ka_         174 VR-----------------------------------------------------------------------------G  176 (350)
T ss_dssp             CT-----------------------------------------------------------------------------T
T ss_pred             cC-----------------------------------------------------------------------------C
Confidence            10                                                                             0


Q ss_pred             ccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc-----------------c
Q 004790          564 ARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ-----------------Q  625 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~-----------------~  625 (730)
                      ....+.+||+.|+|||++.+. .|+.++|||||||++|||++|+.||.+.+..+.+.+++..                 .
T Consensus       177 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~  256 (350)
T d1q5ka_         177 EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTE  256 (350)
T ss_dssp             SCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---C
T ss_pred             cccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhh
Confidence            011235899999999998765 6899999999999999999999999887655544433210                 0


Q ss_pred             ccCC----------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCC
Q 004790          626 LRFP----------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVN  673 (730)
Q Consensus       626 ~~~p----------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~  673 (730)
                      ..++          .....+.++.|||.+||.+||++|||    |+|+|+||||+++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t----a~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         257 FKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLT----PLEACAHSFFDELR  310 (350)
T ss_dssp             CCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGGGGG
T ss_pred             ccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcC----HHHHhcCHhhcccc
Confidence            1111          12356889999999999999999999    79999999998753

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-52  Score=429.39  Aligned_cols=253  Identities=22%  Similarity=0.330  Sum_probs=203.4

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceee
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSC  407 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~  407 (730)
                      +..++|++++.||+|+||+||+|+++. +..||||++++.....    +.+.+|+++|+.++|||||++++++.+++.+|
T Consensus         2 idp~~~~~~~~iG~G~fg~Vy~~~~~~-~~~vAvK~i~~~~~~~----~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~   76 (263)
T d1sm2a_           2 IDPSELTFVQEIGSGQFGLVHLGYWLN-KDKVAIKTIREGAMSE----EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC   76 (263)
T ss_dssp             BCCSCEEEEEEEECCSSCCEEEEEETT-TEEEEEEECCSSSSCH----HHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             CChHHcEEEEEEeeCCCeEEEEEEECC-CCEEEEEEECCCcCcH----HHHHHHHHHHHhcCCCCcccccceeccCCceE
Confidence            345789999999999999999999874 5689999998654332    35788999999999999999999999999999


Q ss_pred             EEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCC
Q 004790          408 LVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSP  487 (730)
Q Consensus       408 LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~  487 (730)
                      ||||||++|+|.+++... ...+++..+..|+.||+.||+|||+++|+||||||+||||+.++++||+|||+|+.+... 
T Consensus        77 lv~E~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~-  154 (263)
T d1sm2a_          77 LVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD-  154 (263)
T ss_dssp             EEEECCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC---------
T ss_pred             EEEEecCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCC-
Confidence            999999999999987654 356889999999999999999999999999999999999999999999999998542100 


Q ss_pred             cccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccc
Q 004790          488 TLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSM  567 (730)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  567 (730)
                                                                                                ......
T Consensus       155 --------------------------------------------------------------------------~~~~~~  160 (263)
T d1sm2a_         155 --------------------------------------------------------------------------QYTSST  160 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------Cceeec
Confidence                                                                                      000112


Q ss_pred             ccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhh
Q 004790          568 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLL  646 (730)
Q Consensus       568 s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL  646 (730)
                      ...||+.|+|||++.+..|+.++|||||||+||||++ |++||.+......+..+. ...+.+.+...+.++.+||.+||
T Consensus       161 ~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~-~~~~~~~p~~~~~~l~~li~~cl  239 (263)
T d1sm2a_         161 GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDIS-TGFRLYKPRLASTHVYQIMNHCW  239 (263)
T ss_dssp             ----CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHH-HTCCCCCCTTSCHHHHHHHHHHT
T ss_pred             ceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHH-hcCCCCCccccCHHHHHHHHHHc
Confidence            3479999999999999999999999999999999998 566666554444444333 33344445577899999999999


Q ss_pred             cCCCCCcCCchhcHHHHHcC
Q 004790          647 VKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       647 ~~DP~~R~t~~~~a~elL~H  666 (730)
                      ..||++||+    ++||++|
T Consensus       240 ~~~p~~Rps----~~~il~~  255 (263)
T d1sm2a_         240 KERPEDRPA----FSRLLRQ  255 (263)
T ss_dssp             CSSGGGSCC----HHHHHHH
T ss_pred             cCCHhHCcC----HHHHHHH
Confidence            999999999    5777765

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-52  Score=439.05  Aligned_cols=263  Identities=25%  Similarity=0.327  Sum_probs=206.6

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc-------
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET-------  402 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~-------  402 (730)
                      .++|+++++||+|+||+||+|+++.+++.||||++.+.... .....++.+|+++|+.++||||++++++|..       
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~-~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~   87 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEK-EGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   87 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CT-TSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc-hHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccc
Confidence            47899999999999999999999999999999999765432 2334567899999999999999999998754       


Q ss_pred             -cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccc
Q 004790          403 -DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       403 -~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                       +..+|+|||||.++.+..+...  ...+++..++.+++||+.||.|||++|||||||||+||||+.++.+||+|||+++
T Consensus        88 ~~~~~~iv~e~~~~~~~~~~~~~--~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~  165 (318)
T d3blha1          88 CKGSIYLVFDFCEHDLAGLLSNV--LVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR  165 (318)
T ss_dssp             ---CEEEEEECCCEEHHHHHTCT--TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             cCceEEEEEeccCCCccchhhhc--ccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceee
Confidence             4578999999987776654433  3679999999999999999999999999999999999999999999999999985


Q ss_pred             cccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccc
Q 004790          482 RCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEP  561 (730)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  561 (730)
                      ........                                                                        
T Consensus       166 ~~~~~~~~------------------------------------------------------------------------  173 (318)
T d3blha1         166 AFSLAKNS------------------------------------------------------------------------  173 (318)
T ss_dssp             ECCC----------------------------------------------------------------------------
T ss_pred             eccccccc------------------------------------------------------------------------
Confidence            43110000                                                                        


Q ss_pred             ccccccccccCcccCChhhhccC-CCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCC----------
Q 004790          562 TAARSMSFVGTHEYLAPEIIKGE-GHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPD----------  630 (730)
Q Consensus       562 ~~~~~~s~vGT~~Y~APEvl~g~-~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~----------  630 (730)
                      ......+.+||+.|+|||++.+. .|+.++|||||||++|||++|+.||.+.+....+..+......++.          
T Consensus       174 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  253 (318)
T d3blha1         174 QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYE  253 (318)
T ss_dssp             -CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-
T ss_pred             ccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhh
Confidence            00111245899999999999876 5899999999999999999999999876554443322211100000          


Q ss_pred             ---------C-----------CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCC
Q 004790          631 ---------S-----------PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEG  671 (730)
Q Consensus       631 ---------~-----------~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~  671 (730)
                               .           ...+.+++|||.+||++||++|+|    ++|+|+||||+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~s----a~elL~Hpff~~  310 (318)
T d3blha1         254 LYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRID----SDDALNHDFFWS  310 (318)
T ss_dssp             ------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCC----HHHHHHSGGGSS
T ss_pred             hhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcC----HHHHHcChhhcc
Confidence                     0           012567889999999999999999    799999999984

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-51  Score=429.56  Aligned_cols=260  Identities=23%  Similarity=0.364  Sum_probs=214.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      +++|+++++||+|+||+||+|+++.+++.||||++++... ......++++|+.+|+.++||||++++++|.+...+++|
T Consensus         1 ~~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv   79 (292)
T d1unla_           1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCS-STTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhC-ChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEE
Confidence            4789999999999999999999999999999999976543 335567789999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+.|++|..++...  +.+++..++.+++|++.||+|||++|||||||||+||||+.++++||+|||+|+......  
T Consensus        80 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~--  155 (292)
T d1unla_          80 FEFCDQDLKKYFDSCN--GDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV--  155 (292)
T ss_dssp             EECCSEEHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCC--
T ss_pred             eeeccccccccccccc--cccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCCC--
Confidence            9999999998877654  678999999999999999999999999999999999999999999999999985431100  


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                                ......
T Consensus       156 --------------------------------------------------------------------------~~~~~~  161 (292)
T d1unla_         156 --------------------------------------------------------------------------RCYSAE  161 (292)
T ss_dssp             --------------------------------------------------------------------------SCCCSC
T ss_pred             --------------------------------------------------------------------------ccceee
Confidence                                                                                      001123


Q ss_pred             ccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCcc-ceeeeec------------------------
Q 004790          570 VGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRA-TLFNVVG------------------------  623 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~-~l~~i~~------------------------  623 (730)
                      .+++.|+|||++.+.. ++.++|||||||++|||++|+.||....+.. .+.++..                        
T Consensus       162 ~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (292)
T d1unla_         162 VVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPM  241 (292)
T ss_dssp             CSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCC
T ss_pred             ccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhccccccccc
Confidence            6788999999998776 6899999999999999999999975433322 2211110                        


Q ss_pred             ---ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          624 ---QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       624 ---~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                         ...........+.+++|||++||++||.+|||    |+|+|+||||+++
T Consensus       242 ~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~s----a~e~L~Hp~f~~~  289 (292)
T d1unla_         242 YPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRIS----AEEALQHPYFSDF  289 (292)
T ss_dssp             CCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCC----HHHHTTSGGGSSC
T ss_pred             ccccchhhhccccCCHHHHHHHHHHccCChhHCcC----HHHHhcChhhcCC
Confidence               00001112456789999999999999999999    7999999999864

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-52  Score=435.26  Aligned_cols=259  Identities=22%  Similarity=0.282  Sum_probs=207.6

Q ss_pred             eEEccCCcEEEEEEEEC--CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEEeeecC
Q 004790          337 KRLGCGDIGSVYLSELS--STRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCP  414 (730)
Q Consensus       337 ~~LG~G~fG~Vyla~~~--~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LVmEy~~  414 (730)
                      ++||+|+||+||+|.++  .+++.||||+++.... .....+.+.+|+++|+.++|||||+++++++++ .+|||||||+
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~-~~~lvmE~~~   90 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN-DPALKDELLAEANVMQQLDNPYIVRMIGICEAE-SWMLVMEMAE   90 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS-SEEEEEECCT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhC-CHHHHHHHHHHHHHHHhCCCCCCceEEEEeccC-CEEEEEEcCC
Confidence            57999999999999864  4567899999976543 334456789999999999999999999999765 5789999999


Q ss_pred             CCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcccccCC
Q 004790          415 GGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSS  494 (730)
Q Consensus       415 GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~  494 (730)
                      ||+|.+++...  ..+++..+..|+.||+.||+|||++|||||||||+||||+.+|++||+|||+|+.+.....      
T Consensus        91 ~g~L~~~l~~~--~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~------  162 (277)
T d1xbba_          91 LGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN------  162 (277)
T ss_dssp             TEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCS------
T ss_pred             CCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhcccccc------
Confidence            99999988765  5799999999999999999999999999999999999999999999999999964321000      


Q ss_pred             CCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccccccccCcc
Q 004790          495 LDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHE  574 (730)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~  574 (730)
                                                                                         .........||+.
T Consensus       163 -------------------------------------------------------------------~~~~~~~~~gt~~  175 (277)
T d1xbba_         163 -------------------------------------------------------------------YYKAQTHGKWPVK  175 (277)
T ss_dssp             -------------------------------------------------------------------EEEC----CCCGG
T ss_pred             -------------------------------------------------------------------ccccccccCCCce
Confidence                                                                               0001123479999


Q ss_pred             cCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCCCCCc
Q 004790          575 YLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHR  653 (730)
Q Consensus       575 Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R  653 (730)
                      |||||++.+..|+.++|||||||++|||++ |+.||.+.+..+....+.. ..+.+.+..++.++++||.+||..||++|
T Consensus       176 y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~-~~~~~~p~~~~~~~~~li~~cl~~dp~~R  254 (277)
T d1xbba_         176 WYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEK-GERMGCPAGCPREMYDLMNLCWTYDVENR  254 (277)
T ss_dssp             GCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHT-TCCCCCCTTCCHHHHHHHHHHTCSSTTTS
T ss_pred             ecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHc-CCCCCCCcccCHHHHHHHHHHcCCCHhHC
Confidence            999999999999999999999999999997 9999998766544443433 33445556789999999999999999999


Q ss_pred             CCchhcHHHHHcCCCCCCCCc
Q 004790          654 LGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       654 ~t~~~~a~elL~HPfF~~v~w  674 (730)
                      |++.+ ..+.|+|+||+-+++
T Consensus       255 Ps~~~-i~~~L~~~~~~~~~e  274 (277)
T d1xbba_         255 PGFAA-VELRLRNYYYDVVNE  274 (277)
T ss_dssp             CCHHH-HHHHHHHHHHHHHHH
T ss_pred             cCHHH-HHHHhhCHHhhcCCC
Confidence            99532 223467888765543

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-51  Score=432.09  Aligned_cols=264  Identities=22%  Similarity=0.308  Sum_probs=215.4

Q ss_pred             cccCCeEEEeE-EccCCcEEEEEEEECC--CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          328 LGMSHFRLLKR-LGCGDIGSVYLSELSS--TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       328 l~~~~y~il~~-LG~G~fG~Vyla~~~~--t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      +..++|.+.+. ||+|+||+||+|.++.  ++..||||++++..  .....+++.+|+++|+.++|||||+++++++++ 
T Consensus         5 l~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~-   81 (285)
T d1u59a_           5 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE-   81 (285)
T ss_dssp             CCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESS-
T ss_pred             ecccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhc--CHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccC-
Confidence            44567888884 9999999999998764  45579999997643  334567789999999999999999999998764 


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|||||||+||+|.+++... ...+++..++.|+.||+.||.|||++|||||||||+||||+.++++||+|||+|+.+.
T Consensus        82 ~~~lvmE~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~  160 (285)
T d1u59a_          82 ALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALG  160 (285)
T ss_dssp             SEEEEEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECT
T ss_pred             eEEEEEEeCCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhccc
Confidence            589999999999999876543 3579999999999999999999999999999999999999999999999999996532


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ....                                                                         ...
T Consensus       161 ~~~~-------------------------------------------------------------------------~~~  167 (285)
T d1u59a_         161 ADDS-------------------------------------------------------------------------YYT  167 (285)
T ss_dssp             TCSC-------------------------------------------------------------------------EEC
T ss_pred             cccc-------------------------------------------------------------------------ccc
Confidence            1000                                                                         000


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      .....+||+.|+|||++.+..++.++|||||||++|||++ |+.||.+.+..+.+..+.. ..+.+.+..++.++.+||.
T Consensus       168 ~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~-~~~~~~p~~~~~~l~~li~  246 (285)
T d1u59a_         168 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQ-GKRMECPPECPPELYALMS  246 (285)
T ss_dssp             CCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHT-TCCCCCCTTCCHHHHHHHH
T ss_pred             cccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHc-CCCCCCCCcCCHHHHHHHH
Confidence            1123478999999999999999999999999999999997 9999998776555544443 3334445678999999999


Q ss_pred             hhhcCCCCCcCCchhcHHHHHcCCCCC
Q 004790          644 GLLVKEPQHRLGVKRGATEIKQHPFFE  670 (730)
Q Consensus       644 ~lL~~DP~~R~t~~~~a~elL~HPfF~  670 (730)
                      +||..||++||++.. +.+.|+|+|+.
T Consensus       247 ~cl~~~p~~RPs~~~-i~~~L~~~~~~  272 (285)
T d1u59a_         247 DCWIYKWEDRPDFLT-VEQRMRACYYS  272 (285)
T ss_dssp             HTTCSSGGGSCCHHH-HHHHHHHHHHH
T ss_pred             HHcCCCHhHCcCHHH-HHHHHHHHHHH
Confidence            999999999999643 34457888874

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-51  Score=440.88  Aligned_cols=260  Identities=24%  Similarity=0.380  Sum_probs=206.8

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc----ee
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR----FS  406 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~----~l  406 (730)
                      ++|++++.||+|+||+||+|+++.+++.||||++++..  .....+++++|+++|+.|+||||+++++++....    ..
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~   85 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE--HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD   85 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTT--CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc--ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccce
Confidence            57999999999999999999999999999999997643  3345567899999999999999999999987543    23


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCC
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~  486 (730)
                      +++|+|+.||+|.++++..   .+++..++.++.||+.||+|||++|||||||||+||||+.+|++||+|||+|+.....
T Consensus        86 ~~l~~~~~~g~L~~~l~~~---~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~  162 (345)
T d1pmea_          86 VYLVTHLMGADLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPD  162 (345)
T ss_dssp             EEEEEECCCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGG
T ss_pred             EEEEEeecCCchhhhhhcC---CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCC
Confidence            4445566699999998764   6999999999999999999999999999999999999999999999999998543110


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      ..                                                                         .....
T Consensus       163 ~~-------------------------------------------------------------------------~~~~~  169 (345)
T d1pmea_         163 HD-------------------------------------------------------------------------HTGFL  169 (345)
T ss_dssp             GC-------------------------------------------------------------------------BCCTT
T ss_pred             Cc-------------------------------------------------------------------------cceee
Confidence            00                                                                         00112


Q ss_pred             cccccCcccCChhhhcc-CCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecc--------------------c
Q 004790          567 MSFVGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQ--------------------Q  625 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g-~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~--------------------~  625 (730)
                      ...+||+.|+|||++.. ..++.++||||+||++|||++|+.||.+.+..++.......                    .
T Consensus       170 ~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (345)
T d1pmea_         170 TEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL  249 (345)
T ss_dssp             CCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHH
T ss_pred             ccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhccc
Confidence            24589999999999854 56789999999999999999999999876543333221100                    0


Q ss_pred             ccCC---------CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          626 LRFP---------DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       626 ~~~p---------~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                      ...+         ..+.++.++++||.+||++||.+||+    ++|+|+||||+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t----a~e~L~hpf~~~~  301 (345)
T d1pmea_         250 LSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIE----VEQALAHPYLEQY  301 (345)
T ss_dssp             HTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCC----HHHHHTSGGGTTT
T ss_pred             ccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcC----HHHHhcCHhhccC
Confidence            0011         12356789999999999999999999    7999999999854

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-51  Score=440.55  Aligned_cols=256  Identities=25%  Similarity=0.376  Sum_probs=210.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc-----cc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET-----DR  404 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~-----~~  404 (730)
                      .++|+++++||+|+||+||+|+++.+++.||||++++... ......++.+|+++|+.|+|||||+++++|..     +.
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~   95 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ-SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF   95 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhc-ChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccC
Confidence            4789999999999999999999999999999999986543 33455678899999999999999999999863     33


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      ..++||+|+.||+|.+++...   .+++..++.|++||+.||+|||++|||||||||+|||++.+|++||+|||++....
T Consensus        96 ~~~~i~~~~~gg~L~~~~~~~---~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~  172 (348)
T d2gfsa1          96 NDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD  172 (348)
T ss_dssp             CCCEEEEECCSEEHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCT
T ss_pred             ceEEEEEeecCCchhhhcccc---cccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccC
Confidence            456677788899999988653   69999999999999999999999999999999999999999999999999983210


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                                                                                                     .
T Consensus       173 -------------------------------------------------------------------------------~  173 (348)
T d2gfsa1         173 -------------------------------------------------------------------------------D  173 (348)
T ss_dssp             -------------------------------------------------------------------------------G
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             cccccccCcccCChhhhccCC-CCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeeccccc----------------
Q 004790          565 RSMSFVGTHEYLAPEIIKGEG-HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLR----------------  627 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~-~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~----------------  627 (730)
                      ...+.+||+.|+|||++.+.. ++.++|||||||++|+|++|++||.+.+.......+......                
T Consensus       174 ~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  253 (348)
T d2gfsa1         174 EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARN  253 (348)
T ss_dssp             GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHH
T ss_pred             ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhh
Confidence            112357999999999988765 589999999999999999999999987654444333221110                


Q ss_pred             -------CCC------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCC
Q 004790          628 -------FPD------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGV  672 (730)
Q Consensus       628 -------~p~------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v  672 (730)
                             .+.      ....+.+++|||++||.+||.+|+|    |+|+|+||||+.+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~t----a~elL~Hp~f~~~  307 (348)
T d2gfsa1         254 YIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRIT----AAQALAHAYFAQY  307 (348)
T ss_dssp             HHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGTTT
T ss_pred             hhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcC----HHHHhcCHhhCCC
Confidence                   010      1356889999999999999999999    7999999999964

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-51  Score=429.66  Aligned_cols=262  Identities=22%  Similarity=0.281  Sum_probs=213.6

Q ss_pred             CCccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          325 DGILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       325 ~~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      .+++..++|++++.||+|+||+||+|+++.+. .||||++++....    .+.+.+|+.+|++++|||||++++++.+ +
T Consensus        11 ~~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~~~-~vAiK~l~~~~~~----~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~   84 (285)
T d1fmka3          11 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTT-RVAIKTLKPGTMS----PEAFLQEAQVMKKLRHEKLVQLYAVVSE-E   84 (285)
T ss_dssp             CSBCCGGGEEEEEEEEECSSCEEEEEEETTTE-EEEEEECCTTSSC----HHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred             ceEcCHHHEEEeeEEeeCCCeEEEEEEECCCC-EEEEEEECcccCC----HHHHHHHHHHHHhcccCCEeEEEEEEec-C
Confidence            45567789999999999999999999998764 6999999765432    2457899999999999999999999865 4


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|+|||||++|+|..++.......+++.+++.|+.||+.||.|||++||+||||||+||||+.++++||+|||+|+...
T Consensus        85 ~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~  164 (285)
T d1fmka3          85 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE  164 (285)
T ss_dssp             SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC---
T ss_pred             CeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhcc
Confidence            57899999999999888776555679999999999999999999999999999999999999999999999999985321


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ...                                                                           ..
T Consensus       165 ~~~---------------------------------------------------------------------------~~  169 (285)
T d1fmka3         165 DNE---------------------------------------------------------------------------YT  169 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCC---------------------------------------------------------------------------ce
Confidence            000                                                                           00


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHh
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRG  644 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~  644 (730)
                      ......||+.|+|||++.+..++.++|||||||+||||++|..||........+...+....+.+....++.++++||.+
T Consensus       170 ~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~  249 (285)
T d1fmka3         170 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQ  249 (285)
T ss_dssp             ------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHH
T ss_pred             eeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccCHHHHHHHHH
Confidence            11234799999999999999999999999999999999996555544444333334344445566667889999999999


Q ss_pred             hhcCCCCCcCCchhcHHHHHc--CCCCCC
Q 004790          645 LLVKEPQHRLGVKRGATEIKQ--HPFFEG  671 (730)
Q Consensus       645 lL~~DP~~R~t~~~~a~elL~--HPfF~~  671 (730)
                      ||..||++||+    +++|++  |+||..
T Consensus       250 cl~~dP~~Rps----~~~i~~~L~~~~~~  274 (285)
T d1fmka3         250 CWRKEPEERPT----FEYLQAFLEDYFTS  274 (285)
T ss_dssp             HTCSSGGGSCC----HHHHHHHHHTTTSC
T ss_pred             HcccCHhHCcC----HHHHHHHHhhhhcC
Confidence            99999999999    678877  888875

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-51  Score=441.66  Aligned_cols=258  Identities=25%  Similarity=0.393  Sum_probs=203.9

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc------cc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE------TD  403 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~------~~  403 (730)
                      +++|+++++||+|+||+||+|+++.+|+.||||++.+... ......++.+|+.+|+.++||||++++++|.      +.
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~-~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~   94 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF   94 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhc-CHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccC
Confidence            4789999999999999999999999999999999987653 3455677899999999999999999999995      44


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                      ..+|+|||||.|+.|. .+.    ..+++..++.+++||+.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus        95 ~~~~iv~Ey~~~~l~~-~~~----~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~  169 (355)
T d2b1pa1          95 QDVYLVMELMDANLCQ-VIQ----MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  169 (355)
T ss_dssp             CEEEEEEECCSEEHHH-HHT----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred             ceeEEEEeccchHHHH-hhh----cCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhcc
Confidence            7899999999665544 333    35899999999999999999999999999999999999999999999999987431


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ..                                                                             .
T Consensus       170 ~~-----------------------------------------------------------------------------~  172 (355)
T d2b1pa1         170 GT-----------------------------------------------------------------------------S  172 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc-----------------------------------------------------------------------------c
Confidence            10                                                                             0


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec--------------------
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG--------------------  623 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~--------------------  623 (730)
                      ......+||+.|+|||++.+..++.++||||+||++|||++|++||.+.+....+.+++.                    
T Consensus       173 ~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  252 (355)
T d2b1pa1         173 FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNY  252 (355)
T ss_dssp             --------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHH
T ss_pred             cccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHH
Confidence            011245799999999999999999999999999999999999999987654433322211                    


Q ss_pred             --cccc---------CCC---------CCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcCCCCCCCCc
Q 004790          624 --QQLR---------FPD---------SPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNW  674 (730)
Q Consensus       624 --~~~~---------~p~---------~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~HPfF~~v~w  674 (730)
                        ....         ++.         ....+.+++|||++||.+||++|||    |+|+|+||||+..-|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t----a~elL~Hpw~~~~~~  319 (355)
T d2b1pa1         253 VENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRIS----VDDALQHPYINVWYD  319 (355)
T ss_dssp             HHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCC----HHHHHTSTTTGGGCC
T ss_pred             hhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcC----HHHHhcCcccCCCCC
Confidence              0000         000         0113567899999999999999999    899999999997433

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-51  Score=424.10  Aligned_cols=251  Identities=23%  Similarity=0.313  Sum_probs=214.0

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccceeeEE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLV  409 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~~l~LV  409 (730)
                      .++|+++++||+|+||+||+|+++ +++.||||++++.....    +.+++|+.+++.++||||++++++|.+++.+|+|
T Consensus         3 ~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~l~~~~~~~----~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv   77 (258)
T d1k2pa_           3 PKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSE----DEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFII   77 (258)
T ss_dssp             CCCCCCCCCCCEETTEEEEEEEET-TTEEEEEEEEESSSSCH----HHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEE
T ss_pred             hHHCEEeEEEecCCCeEEEEEEEC-CCCEEEEEEECcCcCCH----HHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEE
Confidence            468999999999999999999985 67789999998765433    3578999999999999999999999999999999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      |||+++|+|..++... ...+++..++.|+.||+.||+|||++||+||||||+|||++.++++||+|||+++.....   
T Consensus        78 ~Ey~~~g~l~~~~~~~-~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~---  153 (258)
T d1k2pa_          78 TEYMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD---  153 (258)
T ss_dssp             EECCTTEEHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSS---
T ss_pred             EEccCCCcHHHhhhcc-ccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCC---
Confidence            9999999998876554 256889999999999999999999999999999999999999999999999998432100   


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              ........
T Consensus       154 ------------------------------------------------------------------------~~~~~~~~  161 (258)
T d1k2pa_         154 ------------------------------------------------------------------------EYTSSVGS  161 (258)
T ss_dssp             ------------------------------------------------------------------------SCCCCCCS
T ss_pred             ------------------------------------------------------------------------Cceeeccc
Confidence                                                                                    00011234


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVK  648 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~  648 (730)
                      .||+.|+|||++.+..|+.++|||||||++|||++ |+.||.+.+..+...++.. ..+.+.+...+.++++||++||+.
T Consensus       162 ~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~-~~~~~~p~~~~~~l~~li~~cl~~  240 (258)
T d1k2pa_         162 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQ-GLRLYRPHLASEKVYTIMYSCWHE  240 (258)
T ss_dssp             CCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHT-TCCCCCCTTCCHHHHHHHHHTTCS
T ss_pred             CCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHh-CCCCCCcccccHHHHHHHHHHccC
Confidence            79999999999999999999999999999999998 8999998877666655544 344555567899999999999999


Q ss_pred             CCCCcCCchhcHHHHHcC
Q 004790          649 EPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       649 DP~~R~t~~~~a~elL~H  666 (730)
                      ||++|||    +++|++|
T Consensus       241 dP~~RPt----~~eil~~  254 (258)
T d1k2pa_         241 KADERPT----FKILLSN  254 (258)
T ss_dssp             SGGGSCC----HHHHHHH
T ss_pred             CHhHCcC----HHHHHHH
Confidence            9999999    5677765

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-50  Score=422.87  Aligned_cols=254  Identities=21%  Similarity=0.240  Sum_probs=205.4

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCC----eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTR----CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~----~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      ++..+.|++.+.||+|+||+||+|.++.++    ..||||+++....  ......+.+|+++|+.++|||||++++++.+
T Consensus         3 ei~~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~   80 (283)
T d1mqba_           3 EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT--EKQRVDFLGEAGIMGQFSHHNIIRLEGVISK   80 (283)
T ss_dssp             BCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             cCCHHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccC--hHHHHHHHHHHHHHHhcCCCCEeeeeEEEec
Confidence            456678999999999999999999987654    4799999975432  2445568899999999999999999999999


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      ...+|+|||||.+++|..++... ...+++.++..++.||+.||+|||+++||||||||+||||+.++++||+|||+|+.
T Consensus        81 ~~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~  159 (283)
T d1mqba_          81 YKPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRV  159 (283)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             CCceEEEEEecccCcchhhhhcc-cccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhc
Confidence            99999999999999998876544 35799999999999999999999999999999999999999999999999999954


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      +.....                                                                         .
T Consensus       160 ~~~~~~-------------------------------------------------------------------------~  166 (283)
T d1mqba_         160 LEDDPE-------------------------------------------------------------------------A  166 (283)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCc-------------------------------------------------------------------------c
Confidence            311000                                                                         0


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      ........||+.|||||++.+..++.++|||||||+||||++|..||........+.+.+....+.+.+..++.++++||
T Consensus       167 ~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li  246 (283)
T d1mqba_         167 TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLM  246 (283)
T ss_dssp             -------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHH
T ss_pred             ceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCCCCCchhhHHHHHHHH
Confidence            00112346899999999999999999999999999999999966655544444444455555566666677899999999


Q ss_pred             HhhhcCCCCCcCCc
Q 004790          643 RGLLVKEPQHRLGV  656 (730)
Q Consensus       643 ~~lL~~DP~~R~t~  656 (730)
                      .+||..||++||++
T Consensus       247 ~~cl~~~p~~RPt~  260 (283)
T d1mqba_         247 MQCWQQERARRPKF  260 (283)
T ss_dssp             HHHTCSSTTTSCCH
T ss_pred             HHHCcCCHhHCcCH
Confidence            99999999999995

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-50  Score=422.93  Aligned_cols=257  Identities=26%  Similarity=0.342  Sum_probs=207.1

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCC---CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSST---RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFET  402 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t---~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~  402 (730)
                      +++..++|++++.||+|+||+||+|++..+   +..||||+++...  .....+.+.+|+++|+.++|||||+++++|. 
T Consensus         2 ~ei~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-   78 (273)
T d1mp8a_           2 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT--SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-   78 (273)
T ss_dssp             CBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT--SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-
T ss_pred             CCcCHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence            345668999999999999999999998654   3468899886543  3345567899999999999999999999996 


Q ss_pred             cceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccc
Q 004790          403 DRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLR  482 (730)
Q Consensus       403 ~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~  482 (730)
                      ++.+|+|||||++|+|..++... ...+++..++.++.||+.||.|||++|||||||||+|||++.++.+||+|||+|+.
T Consensus        79 ~~~~~iv~E~~~~g~l~~~~~~~-~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~  157 (273)
T d1mp8a_          79 ENPVWIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRY  157 (273)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC------
T ss_pred             cCeEEEEEEeccCCcHHhhhhcc-CCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhhee
Confidence            46789999999999999876654 35689999999999999999999999999999999999999999999999999854


Q ss_pred             ccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccc
Q 004790          483 CAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPT  562 (730)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  562 (730)
                      +...                                                                           .
T Consensus       158 ~~~~---------------------------------------------------------------------------~  162 (273)
T d1mp8a_         158 MEDS---------------------------------------------------------------------------T  162 (273)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCC---------------------------------------------------------------------------c
Confidence            2100                                                                           0


Q ss_pred             cccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHH
Q 004790          563 AARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDL  641 (730)
Q Consensus       563 ~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dL  641 (730)
                      ........||+.|+|||++.+..|+.++|||||||+||||++ |.+||.+.+..+.+.++..+. ..+.+..++.++++|
T Consensus       163 ~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~l  241 (273)
T d1mp8a_         163 YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGE-RLPMPPNCPPTLYSL  241 (273)
T ss_dssp             --------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC-CCCCCTTCCHHHHHH
T ss_pred             ceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-CCCCCCCCCHHHHHH
Confidence            011223478999999999999999999999999999999997 899999887776666655443 345556789999999


Q ss_pred             HHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          642 IRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       642 I~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      |.+||..||++|||    +.||++|
T Consensus       242 i~~cl~~dp~~Rps----~~ei~~~  262 (273)
T d1mp8a_         242 MTKCWAYDPSRRPR----FTELKAQ  262 (273)
T ss_dssp             HHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHcCCCHhHCcC----HHHHHHH
Confidence            99999999999999    5677654

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-50  Score=424.97  Aligned_cols=260  Identities=20%  Similarity=0.277  Sum_probs=205.3

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHF  400 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f  400 (730)
                      ++..++|+++++||+|+||+||+|++..     +++.||||++++...  ....+.+.+|..++.++ +|+||+.+++++
T Consensus         9 ei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~--~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~   86 (299)
T d1ywna1           9 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT--HSEHRALMSELKILIHIGHHLNVVNLLGAC   86 (299)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----C--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccC--cHHHHHHHHHHHHHHhhcCCCeEEEeeeee
Confidence            3556789999999999999999999754     457899999975432  23345567777777666 789999999986


Q ss_pred             cc-cceeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEE
Q 004790          401 ET-DRFSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVL  465 (730)
Q Consensus       401 ~~-~~~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNIL  465 (730)
                      .. +..+|+|||||+||+|.+++....              ...+++.+++.|+.||+.||.|||++|||||||||+|||
T Consensus        87 ~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NIL  166 (299)
T d1ywna1          87 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNIL  166 (299)
T ss_dssp             CSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             ccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCcccee
Confidence            54 567899999999999999876432              235899999999999999999999999999999999999


Q ss_pred             ecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCc
Q 004790          466 VRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRS  545 (730)
Q Consensus       466 l~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (730)
                      |+.++++||+|||+|+.+....                                                          
T Consensus       167 l~~~~~~Kl~DFGla~~~~~~~----------------------------------------------------------  188 (299)
T d1ywna1         167 LSEKNVVKICDFGLARDIYKDP----------------------------------------------------------  188 (299)
T ss_dssp             ECGGGCEEECC------CCSCT----------------------------------------------------------
T ss_pred             ECCCCcEEEccCcchhhccccc----------------------------------------------------------
Confidence            9999999999999995421100                                                          


Q ss_pred             cCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhC-CCCCCCCCCccceeeeecc
Q 004790          546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYG-KTPFKGSGNRATLFNVVGQ  624 (730)
Q Consensus       546 ~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG-~~PF~g~~~~~~l~~i~~~  624 (730)
                                      ......+.+||+.|+|||++.+..++.++|||||||++|||++| .+||.+......+..++..
T Consensus       189 ----------------~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~  252 (299)
T d1ywna1         189 ----------------DYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKE  252 (299)
T ss_dssp             ----------------TSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHH
T ss_pred             ----------------cccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHhc
Confidence                            00112345899999999999999999999999999999999986 5788887766666666666


Q ss_pred             cccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       625 ~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      ..+++....++.++++||.+||..||++|||    ++|+++|
T Consensus       253 ~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt----~~eil~~  290 (299)
T d1ywna1         253 GTRMRAPDYTTPEMYQTMLDCWHGEPSQRPT----FSELVEH  290 (299)
T ss_dssp             TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CCCCCCCccCCHHHHHHHHHHcCCChhHCcC----HHHHHHH
Confidence            6566666678999999999999999999999    6777776

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-50  Score=424.05  Aligned_cols=254  Identities=24%  Similarity=0.326  Sum_probs=206.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCC---CeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSST---RCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR  404 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t---~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~  404 (730)
                      ++.++|++++.||+|+||+||+|++...   ...||||++++......+..+.+.+|+++|+.++||||+++|++|.++ 
T Consensus         5 i~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~-   83 (273)
T d1u46a_           5 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP-   83 (273)
T ss_dssp             CCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-
T ss_pred             EchHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeec-
Confidence            5568899999999999999999987533   236899999877666666678899999999999999999999999764 


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+|+|||||++|+|.+++... .+.+++..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||+++...
T Consensus        84 ~~~lv~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~  162 (273)
T d1u46a_          84 PMKMVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALP  162 (273)
T ss_dssp             SCEEEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred             chheeeeeecCcchhhhhhcc-cCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcc
Confidence            678999999999998876654 3569999999999999999999999999999999999999999999999999986432


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      ....                                                                         ...
T Consensus       163 ~~~~-------------------------------------------------------------------------~~~  169 (273)
T d1u46a_         163 QNDD-------------------------------------------------------------------------HYV  169 (273)
T ss_dssp             C-CC-------------------------------------------------------------------------EEE
T ss_pred             cCCC-------------------------------------------------------------------------cce
Confidence            1100                                                                         001


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ......||..|+|||++.+..++.++|||||||++|||++ |+.||.+.+..+.+.++.....+++....++.++++||+
T Consensus       170 ~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~  249 (273)
T d1u46a_         170 MQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMV  249 (273)
T ss_dssp             C-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHH
T ss_pred             ecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCCCCCCCcccccHHHHHHHH
Confidence            1223468899999999999999999999999999999997 899999988877777777777777777789999999999


Q ss_pred             hhhcCCCCCcCCc
Q 004790          644 GLLVKEPQHRLGV  656 (730)
Q Consensus       644 ~lL~~DP~~R~t~  656 (730)
                      +||..||++|||+
T Consensus       250 ~cl~~dp~~RPt~  262 (273)
T d1u46a_         250 QCWAHKPEDRPTF  262 (273)
T ss_dssp             HHTCSSGGGSCCH
T ss_pred             HHcCCChhHCcCH
Confidence            9999999999995

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-49  Score=423.91  Aligned_cols=256  Identities=21%  Similarity=0.280  Sum_probs=206.3

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCe----EEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRC----YFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETD  403 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~----~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~  403 (730)
                      +..++|++++.||+|+||+||+|++..+++    .||+|.++...  ..+..+.+.+|+++|+.++|||||++++++.++
T Consensus         6 ~k~~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~   83 (317)
T d1xkka_           6 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT--SPKANKEILDEAYVMASVDNPHVCRLLGICLTS   83 (317)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC------CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred             CCHHHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC
Confidence            344689999999999999999999988876    47788775432  223456789999999999999999999999865


Q ss_pred             ceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccc
Q 004790          404 RFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRC  483 (730)
Q Consensus       404 ~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~  483 (730)
                       ..++||||+.+|+|..++... ...+++..++.|+.||+.||+|||++|||||||||+||||+.++++||+|||+|+..
T Consensus        84 -~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~  161 (317)
T d1xkka_          84 -TVQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  161 (317)
T ss_dssp             -SEEEEEECCTTCBHHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHT
T ss_pred             -CeeEEEEeccCCccccccccc-ccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceec
Confidence             567889999999998876654 467999999999999999999999999999999999999999999999999999643


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ....                                                                          ..
T Consensus       162 ~~~~--------------------------------------------------------------------------~~  167 (317)
T d1xkka_         162 GAEE--------------------------------------------------------------------------KE  167 (317)
T ss_dssp             TTTC--------------------------------------------------------------------------C-
T ss_pred             cccc--------------------------------------------------------------------------cc
Confidence            1100                                                                          00


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHH
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLI  642 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI  642 (730)
                      .......||+.|+|||++.+..|+.++|||||||+||||+| |.+||.+.+..+. ..++....+.+.+..++.++++||
T Consensus       168 ~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~-~~~i~~~~~~~~p~~~~~~~~~li  246 (317)
T d1xkka_         168 YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI-SSILEKGERLPQPPICTIDVYMIM  246 (317)
T ss_dssp             -------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGH-HHHHHHTCCCCCCTTBCHHHHHHH
T ss_pred             ccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHH-HHHHHcCCCCCCCcccCHHHHHHH
Confidence            01123478999999999999999999999999999999998 8999988655443 444444455566667899999999


Q ss_pred             HhhhcCCCCCcCCchhcHHHHHcC
Q 004790          643 RGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       643 ~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      .+||..||.+||+    +.||++|
T Consensus       247 ~~cl~~dP~~RPs----~~eil~~  266 (317)
T d1xkka_         247 VKCWMIDADSRPK----FRELIIE  266 (317)
T ss_dssp             HHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHhCCCChhhCcC----HHHHHHH
Confidence            9999999999999    5788777

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-50  Score=417.10  Aligned_cols=244  Identities=22%  Similarity=0.309  Sum_probs=203.3

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc-ccc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE-TDR  404 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~-~~~  404 (730)
                      +++.+++|++++.||+|+||.||+|+++  +..||||++++..     ..+.+++|+++|++++||||+++++++. ..+
T Consensus         2 w~i~~~~~~~~~~lG~G~fg~Vy~~~~~--~~~vAvK~i~~~~-----~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~   74 (262)
T d1byga_           2 WALNMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG   74 (262)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEET--TEEEEEEECCCCC-------HHHHHTHHHHTTCCCTTBCCEEEEECCC--
T ss_pred             CccCHHHeEEeEEEecCCCeEEEEEEEC--CeEEEEEEECcHH-----HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCC
Confidence            4678899999999999999999999985  5679999997653     2356889999999999999999999874 556


Q ss_pred             eeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEeccccccccc
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCA  484 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~  484 (730)
                      .+||||||+++|+|.+++.......+++..++.++.||+.||.|||+++||||||||+|||++.+|++||+|||+++...
T Consensus        75 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~  154 (262)
T d1byga_          75 GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS  154 (262)
T ss_dssp             CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-----
T ss_pred             cEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceecC
Confidence            78999999999999999876544468999999999999999999999999999999999999999999999999984311


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccc
Q 004790          485 VSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAA  564 (730)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  564 (730)
                      .                                                                               
T Consensus       155 ~-------------------------------------------------------------------------------  155 (262)
T d1byga_         155 S-------------------------------------------------------------------------------  155 (262)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHH
Q 004790          565 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIR  643 (730)
Q Consensus       565 ~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~  643 (730)
                      ......+|+.|+|||++.+..++.++|||||||++|||++ |++||.+....+.+.++.. ..+.+....++.++++||+
T Consensus       156 ~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~li~  234 (262)
T d1byga_         156 TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEK-GYKMDAPDGCPPAVYEVMK  234 (262)
T ss_dssp             ------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTT-TCCCCCCTTCCHHHHHHHH
T ss_pred             CCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHc-CCCCCCCccCCHHHHHHHH
Confidence            0112367899999999999999999999999999999998 7999988766655555443 3444555678999999999


Q ss_pred             hhhcCCCCCcCCc
Q 004790          644 GLLVKEPQHRLGV  656 (730)
Q Consensus       644 ~lL~~DP~~R~t~  656 (730)
                      +||..||.+||++
T Consensus       235 ~cl~~dP~~Rps~  247 (262)
T d1byga_         235 NCWHLDAAMRPSF  247 (262)
T ss_dssp             HHTCSSGGGSCCH
T ss_pred             HHcccCHhHCcCH
Confidence            9999999999995

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-49  Score=420.78  Aligned_cols=255  Identities=22%  Similarity=0.307  Sum_probs=210.2

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeE--EEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCY--FAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFETDR  404 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~--vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~~~~  404 (730)
                      +..++|++.++||+|+||+||+|+++.++..  ||||.+++..  ..+..+.+.+|+++|+.+ +|||||++++++.+++
T Consensus         7 i~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~   84 (309)
T d1fvra_           7 LDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA--SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG   84 (309)
T ss_dssp             CCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT
T ss_pred             cCHHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECccc--ChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCC
Confidence            5668999999999999999999999888765  6677765432  334456789999999998 7999999999999999


Q ss_pred             eeeEEeeecCCCCcccccccc--------------CCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCC
Q 004790          405 FSCLVMEYCPGGDLHTLRQRQ--------------PGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDG  470 (730)
Q Consensus       405 ~l~LVmEy~~GGsL~~ll~~~--------------~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g  470 (730)
                      .+|+|||||+||+|.++++..              ....+++..+..|+.||+.||.|||++|||||||||+|||++.++
T Consensus        85 ~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~  164 (309)
T d1fvra_          85 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENY  164 (309)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGG
T ss_pred             eeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCC
Confidence            999999999999999988653              235789999999999999999999999999999999999999999


Q ss_pred             ceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCC
Q 004790          471 HIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLP  550 (730)
Q Consensus       471 ~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (730)
                      .+||+|||+|+....                                                                 
T Consensus       165 ~~kl~DfG~a~~~~~-----------------------------------------------------------------  179 (309)
T d1fvra_         165 VAKIADFGLSRGQEV-----------------------------------------------------------------  179 (309)
T ss_dssp             CEEECCTTCEESSCE-----------------------------------------------------------------
T ss_pred             ceEEccccccccccc-----------------------------------------------------------------
Confidence            999999999843210                                                                 


Q ss_pred             CCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCC-CCCCCCCCccceeeeecccccCC
Q 004790          551 SSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGK-TPFKGSGNRATLFNVVGQQLRFP  629 (730)
Q Consensus       551 ~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~-~PF~g~~~~~~l~~i~~~~~~~p  629 (730)
                                  ........||+.|+|||.+.+..|+.++|||||||++|||++|. +||.+.+..+.+..+.. ..+++
T Consensus       180 ------------~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~-~~~~~  246 (309)
T d1fvra_         180 ------------YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQ-GYRLE  246 (309)
T ss_dssp             ------------ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGG-TCCCC
T ss_pred             ------------cccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHh-cCCCC
Confidence                        00112347899999999999999999999999999999999965 57877665555544443 34555


Q ss_pred             CCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHcC
Q 004790          630 DSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQH  666 (730)
Q Consensus       630 ~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~H  666 (730)
                      .+..++.++++||.+||..||++||+    +++|++|
T Consensus       247 ~~~~~~~~~~~li~~cl~~dP~~RPs----~~eil~~  279 (309)
T d1fvra_         247 KPLNCDDEVYDLMRQCWREKPYERPS----FAQILVS  279 (309)
T ss_dssp             CCTTBCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CCccCCHHHHHHHHHHcCCChhHCcC----HHHHHHH
Confidence            55678999999999999999999999    6777776

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.3e-49  Score=414.79  Aligned_cols=254  Identities=20%  Similarity=0.275  Sum_probs=211.3

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE  401 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~  401 (730)
                      ++..++|++++.||+|+||+||+|++++     +++.||||++++..  ..+...++++|+++|+.++||||+++++++.
T Consensus         9 e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~E~~il~~l~h~niv~~~~~~~   86 (301)
T d1lufa_           9 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDNPNIVKLLGVCA   86 (301)
T ss_dssp             BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             cCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhc--ChHHHHHHHHHHHHHHhcCCCCcccceeeec
Confidence            3455789999999999999999999864     56789999997643  2345567899999999999999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccC----------------------CCCccHHHHHHhHHHHHHHHHHhHhcceeeccc
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQP----------------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDL  459 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~----------------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDL  459 (730)
                      +...+++||||+++|+|.+++....                      ...+++..+..|+.||+.||+|||++|||||||
T Consensus        87 ~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDl  166 (301)
T d1lufa_          87 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDL  166 (301)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEE
Confidence            9999999999999999999875421                      234888999999999999999999999999999


Q ss_pred             CCccEEecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccc
Q 004790          460 KPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKK  539 (730)
Q Consensus       460 KPeNILl~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~  539 (730)
                      ||+||||+.++++||+|||+|+......                                                    
T Consensus       167 Kp~NILld~~~~~Kl~DFGls~~~~~~~----------------------------------------------------  194 (301)
T d1lufa_         167 ATRNCLVGENMVVKIADFGLSRNIYSAD----------------------------------------------------  194 (301)
T ss_dssp             SGGGEEECGGGCEEECCCSCHHHHTGGG----------------------------------------------------
T ss_pred             cccceEECCCCcEEEccchhheeccCCc----------------------------------------------------
Confidence            9999999999999999999985431100                                                    


Q ss_pred             cCCCCccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCC-CCCCCCCCccce
Q 004790          540 TRKPRSELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGK-TPFKGSGNRATL  618 (730)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~-~PF~g~~~~~~l  618 (730)
                                            ......+.+||+.|+|||++.+..|+.++|||||||++|||++|. +||.+.+..+.+
T Consensus       195 ----------------------~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~  252 (301)
T d1lufa_         195 ----------------------YYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVI  252 (301)
T ss_dssp             ----------------------CBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH
T ss_pred             ----------------------cccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHHHH
Confidence                                  001123457999999999999999999999999999999999985 678887766666


Q ss_pred             eeeecccccCCCCCCCChhHHHHHHhhhcCCCCCcCCch
Q 004790          619 FNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       619 ~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~  657 (730)
                      ..+..+. ..+.+..++.++.+||++||..||.+|||+.
T Consensus       253 ~~v~~~~-~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~  290 (301)
T d1lufa_         253 YYVRDGN-ILACPENCPLELYNLMRLCWSKLPADRPSFC  290 (301)
T ss_dssp             HHHHTTC-CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHHcCC-CCCCCccchHHHHHHHHHHcCCChhHCcCHH
Confidence            5555443 3344557899999999999999999999953

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-48  Score=413.50  Aligned_cols=258  Identities=20%  Similarity=0.292  Sum_probs=218.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEEC-----CCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCcccccccc
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELS-----STRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHFE  401 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~-----~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f~  401 (730)
                      +..++|+++++||+|+||.||+|++.     .+++.||||++++...  ......+.+|+.+++.+ +|||||++++++.
T Consensus        20 ~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~--~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~   97 (311)
T d1t46a_          20 FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH--LTEREALMSELKVLSYLGNHMNIVNLLGACT   97 (311)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             CCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccC--HHHHHHHHHHHHHHHhccCCCCEEEEEEEEe
Confidence            55689999999999999999999863     4677899999976543  23455788999999998 7999999999999


Q ss_pred             ccceeeEEeeecCCCCccccccccC----------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEE
Q 004790          402 TDRFSCLVMEYCPGGDLHTLRQRQP----------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVL  465 (730)
Q Consensus       402 ~~~~l~LVmEy~~GGsL~~ll~~~~----------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNIL  465 (730)
                      ++..+|||||||++|+|..++.+..                ...+++..++.|+.||+.||+|||++|||||||||+|||
T Consensus        98 ~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl  177 (311)
T d1t46a_          98 IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNIL  177 (311)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             eCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccccccc
Confidence            9999999999999999999876542                235889999999999999999999999999999999999


Q ss_pred             ecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCc
Q 004790          466 VRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRS  545 (730)
Q Consensus       466 l~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (730)
                      ++.++++||+|||+++.+....                                                          
T Consensus       178 ~~~~~~~ki~DfG~~~~~~~~~----------------------------------------------------------  199 (311)
T d1t46a_         178 LTHGRITKICDFGLARDIKNDS----------------------------------------------------------  199 (311)
T ss_dssp             EETTTEEEECCCGGGSCTTSCT----------------------------------------------------------
T ss_pred             ccccCcccccccchheeccCCC----------------------------------------------------------
Confidence            9999999999999985421000                                                          


Q ss_pred             cCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeecc
Q 004790          546 ELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVGQ  624 (730)
Q Consensus       546 ~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~~  624 (730)
                                      ........+||+.|+|||++.+..++.++|||||||++|||++ |.+||.+......+.+++..
T Consensus       200 ----------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~  263 (311)
T d1t46a_         200 ----------------NYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKE  263 (311)
T ss_dssp             ----------------TSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHH
T ss_pred             ----------------cceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhc
Confidence                            0011123589999999999999999999999999999999998 77777777777777777777


Q ss_pred             cccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          625 QLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       625 ~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      ..+.......+.++.+||.+||..||.+||++    ++|++
T Consensus       264 ~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~----~~il~  300 (311)
T d1t46a_         264 GFRMLSPEHAPAEMYDIMKTCWDADPLKRPTF----KQIVQ  300 (311)
T ss_dssp             TCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCH----HHHHH
T ss_pred             CCCCCCcccccHHHHHHHHHHcCCChhHCcCH----HHHHH
Confidence            77666667789999999999999999999994    56553

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-48  Score=410.05  Aligned_cols=258  Identities=23%  Similarity=0.327  Sum_probs=209.3

Q ss_pred             ccccCCeEEEeEEccCCcEEEEEEEECCCC-------eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccc
Q 004790          327 ILGMSHFRLLKRLGCGDIGSVYLSELSSTR-------CYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYT  398 (730)
Q Consensus       327 ~l~~~~y~il~~LG~G~fG~Vyla~~~~t~-------~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~  398 (730)
                      .+..++|++++.||+|+||.||+|++..++       ..||||++++...  ......+.+|..++.++ +|||||++++
T Consensus         9 ~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~~e~~~l~~~~~HpnIv~~~~   86 (299)
T d1fgka_           9 ELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDAT--EKDLSDLISEMEMMKMIGKHKNIINLLG   86 (299)
T ss_dssp             BCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccC--hHHHHHHHHHHHHHHHhcCCCeEEeccc
Confidence            466789999999999999999999986654       4799999976542  24456678888888877 8999999999


Q ss_pred             cccccceeeEEeeecCCCCccccccccC--------------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccE
Q 004790          399 HFETDRFSCLVMEYCPGGDLHTLRQRQP--------------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENV  464 (730)
Q Consensus       399 ~f~~~~~l~LVmEy~~GGsL~~ll~~~~--------------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNI  464 (730)
                      +|.++..+|+|||||++|+|.+++....              ...+++.+++.|+.||+.||.|||++|||||||||+||
T Consensus        87 ~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~Ni  166 (299)
T d1fgka_          87 ACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNV  166 (299)
T ss_dssp             EECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             ccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccce
Confidence            9999999999999999999999886442              24689999999999999999999999999999999999


Q ss_pred             EecCCCceEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCC
Q 004790          465 LVRDDGHIMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPR  544 (730)
Q Consensus       465 Ll~~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (730)
                      |++.+|.+||+|||+++......                                                         
T Consensus       167 Ll~~~~~~kl~dfg~~~~~~~~~---------------------------------------------------------  189 (299)
T d1fgka_         167 LVTEDNVMKIADFGLARDIHHID---------------------------------------------------------  189 (299)
T ss_dssp             EECTTCCEEECSTTCCCCGGGCC---------------------------------------------------------
T ss_pred             eecCCCCeEeccchhhccccccc---------------------------------------------------------
Confidence            99999999999999985421100                                                         


Q ss_pred             ccCCCCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhh-CCCCCCCCCCccceeeeec
Q 004790          545 SELGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLY-GKTPFKGSGNRATLFNVVG  623 (730)
Q Consensus       545 ~~~~~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELlt-G~~PF~g~~~~~~l~~i~~  623 (730)
                                       ........+||+.|+|||++.+..|+.++|||||||++|||++ |++||.+.+... +.+.+.
T Consensus       190 -----------------~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~-~~~~i~  251 (299)
T d1fgka_         190 -----------------YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-LFKLLK  251 (299)
T ss_dssp             -----------------TTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH-HHHHHH
T ss_pred             -----------------cccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHH-HHHHHH
Confidence                             0011234579999999999999999999999999999999997 799998765544 334444


Q ss_pred             ccccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          624 QQLRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       624 ~~~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                      ...+++.+..++.++++||.+||++||.+|||    +.||++
T Consensus       252 ~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps----~~eil~  289 (299)
T d1fgka_         252 EGHRMDKPSNCTNELYMMMRDCWHAVPSQRPT----FKQLVE  289 (299)
T ss_dssp             TTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             cCCCCCCCccchHHHHHHHHHHccCCHhHCcC----HHHHHH
Confidence            45555666678999999999999999999999    466654

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-48  Score=415.26  Aligned_cols=272  Identities=20%  Similarity=0.249  Sum_probs=222.5

Q ss_pred             CccccCCeEEEeEEccCCcEEEEEEEECC-----CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 004790          326 GILGMSHFRLLKRLGCGDIGSVYLSELSS-----TRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHF  400 (730)
Q Consensus       326 ~~l~~~~y~il~~LG~G~fG~Vyla~~~~-----t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f  400 (730)
                      +++..++|+++++||+|+||+||+|+++.     ++..||||++++..  ..+....+.+|+++|++++||||+++++++
T Consensus        15 ~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~--~~~~~~~~~~E~~il~~l~h~nIv~~~~~~   92 (308)
T d1p4oa_          15 WEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEASVMKEFNCHHVVRLLGVV   92 (308)
T ss_dssp             TBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS--CHHHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred             eeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECccc--ChHHHHHHHHHHHHHHHcCCCCEeeeeeEE
Confidence            45667899999999999999999998853     35689999997653  334456789999999999999999999999


Q ss_pred             cccceeeEEeeecCCCCccccccccC--------CCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCce
Q 004790          401 ETDRFSCLVMEYCPGGDLHTLRQRQP--------GKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHI  472 (730)
Q Consensus       401 ~~~~~l~LVmEy~~GGsL~~ll~~~~--------~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~v  472 (730)
                      ..+..+|+|||||++|+|..++....        ...+++..+..|+.||+.||.|||+++||||||||+||||+.++++
T Consensus        93 ~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~  172 (308)
T d1p4oa_          93 SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTV  172 (308)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCE
T ss_pred             ecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceE
Confidence            99999999999999999998776431        1346888899999999999999999999999999999999999999


Q ss_pred             EEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCC
Q 004790          473 MLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSS  552 (730)
Q Consensus       473 KL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (730)
                      ||+|||+|+......                                                                 
T Consensus       173 Kl~DFGla~~~~~~~-----------------------------------------------------------------  187 (308)
T d1p4oa_         173 KIGDFGMTRDIYETD-----------------------------------------------------------------  187 (308)
T ss_dssp             EECCTTCCCGGGGGG-----------------------------------------------------------------
T ss_pred             EEeecccceeccCCc-----------------------------------------------------------------
Confidence            999999985431100                                                                 


Q ss_pred             CCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhC-CCCCCCCCCccceeeeecccccCCCC
Q 004790          553 TLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYG-KTPFKGSGNRATLFNVVGQQLRFPDS  631 (730)
Q Consensus       553 ~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG-~~PF~g~~~~~~l~~i~~~~~~~p~~  631 (730)
                               ........+||+.|+|||.+.+..++.++|||||||+||||++| .+||.+.+..+.+..+..+. ..+..
T Consensus       188 ---------~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~-~~~~p  257 (308)
T d1p4oa_         188 ---------YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGG-LLDKP  257 (308)
T ss_dssp             ---------CEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTC-CCCCC
T ss_pred             ---------ceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhCC-CCCCc
Confidence                     00112335799999999999999999999999999999999998 58888876666665555433 34444


Q ss_pred             CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc--CCCCCCCCc
Q 004790          632 PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ--HPFFEGVNW  674 (730)
Q Consensus       632 ~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~--HPfF~~v~w  674 (730)
                      ..++..+.+||.+||+.||++||++.+.++.|.+  +|+|+.++.
T Consensus       258 ~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~~~~~~~~~  302 (308)
T d1p4oa_         258 DNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF  302 (308)
T ss_dssp             TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHHHCS
T ss_pred             ccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCcCCCC
Confidence            6788999999999999999999996444443333  888876553

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.2e-48  Score=404.77  Aligned_cols=271  Identities=18%  Similarity=0.257  Sum_probs=206.5

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCC-ccccccccccceeeEE
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFL-PTLYTHFETDRFSCLV  409 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnI-V~L~~~f~~~~~l~LV  409 (730)
                      ++|++++.||+|+||+||+|++..+++.||||++......     ..+.+|+++++.++|+|+ +.++.++.++...|+|
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-----~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~iv   81 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH-----PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV   81 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTS-----CCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccC-----HHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEE
Confidence            5799999999999999999999999999999998765322     246789999999987765 4556667788899999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC---CCceEEecccccccccCC
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD---DGHIMLSDFDLSLRCAVS  486 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~---~g~vKL~DFGlA~~~~~~  486 (730)
                      |||+ +++|...+... .+.+++..++.++.||+.||+|||++|||||||||+|||++.   +..+||+|||+|+.....
T Consensus        82 me~~-~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~  159 (299)
T d1ckia_          82 MELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  159 (299)
T ss_dssp             EECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCT
T ss_pred             EEEc-CCchhhhhhhc-cCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceecccc
Confidence            9999 66665554432 367999999999999999999999999999999999999864   457999999999654211


Q ss_pred             CcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccccccccccc
Q 004790          487 PTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARS  566 (730)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  566 (730)
                      .....                                                                     ......
T Consensus       160 ~~~~~---------------------------------------------------------------------~~~~~~  170 (299)
T d1ckia_         160 RTHQH---------------------------------------------------------------------IPYREN  170 (299)
T ss_dssp             TTCCB---------------------------------------------------------------------CCCCBC
T ss_pred             ccccc---------------------------------------------------------------------eecccc
Confidence            00000                                                                     001122


Q ss_pred             cccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeec---ccccCC---CCCCCChhHHH
Q 004790          567 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVG---QQLRFP---DSPATSYASRD  640 (730)
Q Consensus       567 ~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~---~~~~~p---~~~~~s~~~~d  640 (730)
                      .+.+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.........+..   .....+   ....++.++.+
T Consensus       171 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  250 (299)
T d1ckia_         171 KNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFAT  250 (299)
T ss_dssp             CSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHH
T ss_pred             CCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHH
Confidence            356899999999999999999999999999999999999999988665544433321   111222   12467899999


Q ss_pred             HHHhhhcCCCCCcCCchhcHHHHHcCCCCC-------CCCcchhc
Q 004790          641 LIRGLLVKEPQHRLGVKRGATEIKQHPFFE-------GVNWALIR  678 (730)
Q Consensus       641 LI~~lL~~DP~~R~t~~~~a~elL~HPfF~-------~v~w~~~r  678 (730)
                      ||.+||..||++||++.. +.++|+|+|.+       .+||..++
T Consensus       251 li~~cl~~~p~~RP~~~~-i~~~l~~~~~~~~~~~~~~~Dw~~~~  294 (299)
T d1ckia_         251 YLNFCRSLRFDDKPDYSY-LRQLFRNLFHRQGFSYDYVFDWNMLK  294 (299)
T ss_dssp             HHHHHHHSCTTCCCCHHH-HHHHHHHHHHHHTCCCSCCCHHHHGG
T ss_pred             HHHHHccCChhHCcCHHH-HHHHHHHHHHHcCCCCCCCcCchhhc
Confidence            999999999999999632 34667776653       25777665

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-46  Score=399.86  Aligned_cols=254  Identities=17%  Similarity=0.219  Sum_probs=200.9

Q ss_pred             EEEeEEccCCcEEEEEEEECCCC---eEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCcccccccc-ccceeeEE
Q 004790          334 RLLKRLGCGDIGSVYLSELSSTR---CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE-TDRFSCLV  409 (730)
Q Consensus       334 ~il~~LG~G~fG~Vyla~~~~t~---~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~-~~~~l~LV  409 (730)
                      .+.++||+|+||+||+|++..++   ..||||++++.  .......++.+|+++|++++||||+++++++. .+..+|+|
T Consensus        30 ~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv  107 (311)
T d1r0pa_          30 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  107 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEECC----CEEEEEEEECCC--CCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEE
T ss_pred             ccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcc--cCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEE
Confidence            34678999999999999986643   36899999753  24456678999999999999999999999875 46789999


Q ss_pred             eeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecccccccccCCCcc
Q 004790          410 MEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTL  489 (730)
Q Consensus       410 mEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~~~~~~~~~  489 (730)
                      ||||++|+|.+++... ...+++..+..++.||+.||.|||+.+|+||||||+||||+.++.+||+|||+++........
T Consensus       108 ~E~~~~g~l~~~~~~~-~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~  186 (311)
T d1r0pa_         108 LPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFD  186 (311)
T ss_dssp             EECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCC
T ss_pred             EEEeecCchhhhhccc-cccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccccccc
Confidence            9999999999987654 356778888999999999999999999999999999999999999999999999543110000


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccccccccc
Q 004790          490 IKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTAARSMSF  569 (730)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~  569 (730)
                                                                                              ........
T Consensus       187 ------------------------------------------------------------------------~~~~~~~~  194 (311)
T d1r0pa_         187 ------------------------------------------------------------------------SVHNKTGA  194 (311)
T ss_dssp             ------------------------------------------------------------------------CTTCTTCS
T ss_pred             ------------------------------------------------------------------------cceecccc
Confidence                                                                                    00011234


Q ss_pred             ccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCccceeeeecccccCCCCCCCChhHHHHHHhhhcCC
Q 004790          570 VGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKE  649 (730)
Q Consensus       570 vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~i~~~~~~~p~~~~~s~~~~dLI~~lL~~D  649 (730)
                      .||+.|+|||++.+..++.++|||||||+||||++|..||........+...+....+.+.+..++.++.+||.+||..|
T Consensus       195 ~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~d  274 (311)
T d1r0pa_         195 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPK  274 (311)
T ss_dssp             SCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             cccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCC
Confidence            78999999999999999999999999999999999888877654433333322223344455678899999999999999


Q ss_pred             CCCcCCchhcHHHHHcC
Q 004790          650 PQHRLGVKRGATEIKQH  666 (730)
Q Consensus       650 P~~R~t~~~~a~elL~H  666 (730)
                      |++||+    +.||++|
T Consensus       275 P~~RPs----~~ei~~~  287 (311)
T d1r0pa_         275 AEMRPS----FSELVSR  287 (311)
T ss_dssp             GGGSCC----HHHHHHH
T ss_pred             HhHCcC----HHHHHHH
Confidence            999999    5677766

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=5.1e-46  Score=391.67  Aligned_cols=252  Identities=19%  Similarity=0.237  Sum_probs=203.3

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC-CCCccccccccccceeeE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH-PFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H-PnIV~L~~~f~~~~~l~L  408 (730)
                      .++|++++.||+|+||+||+|++..+++.||||++.+....     ..+++|+++++.|.| +||+.+++++.++...|+
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-----~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~   78 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA-----PQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL   78 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTS-----CCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCc-----HHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEE
Confidence            47899999999999999999999999999999998764321     236789999999965 899999999999999999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecC-----CCceEEecccccccc
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRD-----DGHIMLSDFDLSLRC  483 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~-----~g~vKL~DFGlA~~~  483 (730)
                      ||||+ |++|..+++.. +..+++..+..++.|++.||+|||++|||||||||+||||+.     ++.+||+|||+|+..
T Consensus        79 vme~~-~~~l~~~~~~~-~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~  156 (293)
T d1csna_          79 VIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFY  156 (293)
T ss_dssp             EEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEES
T ss_pred             EEEec-CCCHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEc
Confidence            99999 88998877654 457999999999999999999999999999999999999964     578999999999653


Q ss_pred             cCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCccccccccc
Q 004790          484 AVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELVAEPTA  563 (730)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  563 (730)
                      ........                                                                     ...
T Consensus       157 ~~~~~~~~---------------------------------------------------------------------~~~  167 (293)
T d1csna_         157 RDPVTKQH---------------------------------------------------------------------IPY  167 (293)
T ss_dssp             BCTTTCCB---------------------------------------------------------------------CCC
T ss_pred             ccCccccc---------------------------------------------------------------------eee
Confidence            21100000                                                                     000


Q ss_pred             ccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcccee---eeecccccCC---CCCCCChh
Q 004790          564 ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF---NVVGQQLRFP---DSPATSYA  637 (730)
Q Consensus       564 ~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~---~i~~~~~~~p---~~~~~s~~  637 (730)
                      ....+++||+.|||||++.+..++.++|||||||++|||++|+.||.+........   .+.......+   ....++.+
T Consensus       168 ~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~  247 (293)
T d1csna_         168 REKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEE  247 (293)
T ss_dssp             CCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHH
T ss_pred             cccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHH
Confidence            12235689999999999999999999999999999999999999998765443322   2222111111   11357889


Q ss_pred             HHHHHHhhhcCCCCCcCCch
Q 004790          638 SRDLIRGLLVKEPQHRLGVK  657 (730)
Q Consensus       638 ~~dLI~~lL~~DP~~R~t~~  657 (730)
                      +.+||..|+..+|++||+++
T Consensus       248 l~~ii~~~~~~~~~~rP~y~  267 (293)
T d1csna_         248 FYKYMHYARNLAFDATPDYD  267 (293)
T ss_dssp             HHHHHHHHHHCCTTCCCCHH
T ss_pred             HHHHHHHHhcCCcccCcCHH
Confidence            99999999999999999853

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-45  Score=391.37  Aligned_cols=257  Identities=22%  Similarity=0.376  Sum_probs=196.8

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-----------CCCCccccc
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-----------HPFLPTLYT  398 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-----------HPnIV~L~~  398 (730)
                      .++|+++++||+|+||+||+|+++.+|+.||||++++...    ..+.+++|+.+|+.++           |+||+++++
T Consensus        12 ~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~----~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~   87 (362)
T d1q8ya_          12 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKV----YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLD   87 (362)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH----HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCE
T ss_pred             CCcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecccc----chHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEE
Confidence            3579999999999999999999999999999999987643    2345678888888775           578999999


Q ss_pred             cccc--cceeeEEeeecCCCCccc-cccccCCCCccHHHHHHhHHHHHHHHHHhHh-cceeecccCCccEEecCCCc---
Q 004790          399 HFET--DRFSCLVMEYCPGGDLHT-LRQRQPGKHFSEYAARFYAAEVLLALEYLHM-LGVVYRDLKPENVLVRDDGH---  471 (730)
Q Consensus       399 ~f~~--~~~l~LVmEy~~GGsL~~-ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-~gIVHRDLKPeNILl~~~g~---  471 (730)
                      ++..  ....++||+++..+.... .........+++..++.++.||+.||.|||+ +||+||||||+||||+.++.   
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~  167 (362)
T d1q8ya_          88 HFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPEN  167 (362)
T ss_dssp             EEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTT
T ss_pred             EeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccc
Confidence            8864  356677777776655432 3333445688999999999999999999997 89999999999999987654   


Q ss_pred             ---eEEecccccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCC
Q 004790          472 ---IMLSDFDLSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELG  548 (730)
Q Consensus       472 ---vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (730)
                         +||+|||.|....                                                                
T Consensus       168 ~~~~kl~dfg~s~~~~----------------------------------------------------------------  183 (362)
T d1q8ya_         168 LIQIKIADLGNACWYD----------------------------------------------------------------  183 (362)
T ss_dssp             EEEEEECCCTTCEETT----------------------------------------------------------------
T ss_pred             cceeeEeecccccccc----------------------------------------------------------------
Confidence               9999999984310                                                                


Q ss_pred             CCCCCCcccccccccccccccccCcccCChhhhccCCCCCcceeechhHHHHHHhhCCCCCCCCCCcccee------e--
Q 004790          549 LPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLF------N--  620 (730)
Q Consensus       549 ~~~~~~~~~~~e~~~~~~~s~vGT~~Y~APEvl~g~~~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~------~--  620 (730)
                                     ......+||+.|+|||++.+..|+.++|||||||++++|++|+.||..........      .  
T Consensus       184 ---------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~  248 (362)
T d1q8ya_         184 ---------------EHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQII  248 (362)
T ss_dssp             ---------------BCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHH
T ss_pred             ---------------cccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHH
Confidence                           01123579999999999999999999999999999999999999998643211100      0  


Q ss_pred             -eec------------------------c--c-----------ccCCCCCCCChhHHHHHHhhhcCCCCCcCCchhcHHH
Q 004790          621 -VVG------------------------Q--Q-----------LRFPDSPATSYASRDLIRGLLVKEPQHRLGVKRGATE  662 (730)
Q Consensus       621 -i~~------------------------~--~-----------~~~p~~~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~e  662 (730)
                       ++.                        .  .           ..+......+.+++|||.+||++||.+|||    |+|
T Consensus       249 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpt----a~e  324 (362)
T d1q8ya_         249 ELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRAD----AGG  324 (362)
T ss_dssp             HHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBC----HHH
T ss_pred             HHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcC----HHH
Confidence             000                        0  0           001111223567899999999999999999    799


Q ss_pred             HHcCCCCCCCC
Q 004790          663 IKQHPFFEGVN  673 (730)
Q Consensus       663 lL~HPfF~~v~  673 (730)
                      +|+||||+++.
T Consensus       325 ~L~Hp~f~~~~  335 (362)
T d1q8ya_         325 LVNHPWLKDTL  335 (362)
T ss_dssp             HHTCGGGTTCT
T ss_pred             HhcCcccCCCC
Confidence            99999999654

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-45  Score=389.72  Aligned_cols=250  Identities=21%  Similarity=0.250  Sum_probs=186.7

Q ss_pred             CCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCCccccccccccc----ee
Q 004790          331 SHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDR----FS  406 (730)
Q Consensus       331 ~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnIV~L~~~f~~~~----~l  406 (730)
                      .+|.+.++||+|+||+||+|++  +|+.||||+++.....    ......|+..+..++||||+++++++.+++    .+
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~--~g~~vAvK~~~~~~~~----~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~   76 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREER----SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQL   76 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE--TTEEEEEEEECGGGHH----HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccchh----HHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEE
Confidence            4689999999999999999997  4779999999754321    111223444556789999999999987643    68


Q ss_pred             eEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh--------cceeecccCCccEEecCCCceEEeccc
Q 004790          407 CLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM--------LGVVYRDLKPENVLVRDDGHIMLSDFD  478 (730)
Q Consensus       407 ~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~--------~gIVHRDLKPeNILl~~~g~vKL~DFG  478 (730)
                      |||||||++|+|..++++.   .+++.....++.|++.||.|||.        +|||||||||+||||+.+|++||+|||
T Consensus        77 ~lv~Ey~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFG  153 (303)
T d1vjya_          77 WLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG  153 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCT
T ss_pred             EEEEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecC
Confidence            9999999999999999864   68899999999999999999996        599999999999999999999999999


Q ss_pred             ccccccCCCcccccCCCCCCCCCCCCCCCcccCCCcCCCCccccCCCCccCcccccccccccCCCCccCCCCCCCCcccc
Q 004790          479 LSLRCAVSPTLIKTSSLDSDPSRRGPGGSFCVQPACIEPSSVCIQPACFIPRIFPQKNKKKTRKPRSELGLPSSTLPELV  558 (730)
Q Consensus       479 lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (730)
                      +++.+......                                                                     
T Consensus       154 l~~~~~~~~~~---------------------------------------------------------------------  164 (303)
T d1vjya_         154 LAVRHDSATDT---------------------------------------------------------------------  164 (303)
T ss_dssp             TCEEEETTTTE---------------------------------------------------------------------
T ss_pred             ccccccCCCcc---------------------------------------------------------------------
Confidence            98654211000                                                                     


Q ss_pred             cccccccccccccCcccCChhhhccCC------CCCcceeechhHHHHHHhhCCCCCCCCCCccceee------------
Q 004790          559 AEPTAARSMSFVGTHEYLAPEIIKGEG------HGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFN------------  620 (730)
Q Consensus       559 ~e~~~~~~~s~vGT~~Y~APEvl~g~~------~~~~sDIWSLG~iLyELltG~~PF~g~~~~~~l~~------------  620 (730)
                         ........+||+.|||||++.+..      ++.++|||||||+||||++|..||.........+.            
T Consensus       165 ---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (303)
T d1vjya_         165 ---IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEM  241 (303)
T ss_dssp             ---ECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHH
T ss_pred             ---eeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHH
Confidence               001122458999999999998753      46789999999999999999988854332211110            


Q ss_pred             --e-eccccc--CCCC---CCCChhHHHHHHhhhcCCCCCcCCchhcHHHHHc
Q 004790          621 --V-VGQQLR--FPDS---PATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQ  665 (730)
Q Consensus       621 --i-~~~~~~--~p~~---~~~s~~~~dLI~~lL~~DP~~R~t~~~~a~elL~  665 (730)
                        . ..+..+  +|..   ......+.+||.+||..||.+||++    .||++
T Consensus       242 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~----~ei~~  290 (303)
T d1vjya_         242 RKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTA----LRIKK  290 (303)
T ss_dssp             HHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCH----HHHHH
T ss_pred             HHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCH----HHHHH
Confidence              0 111111  1111   1112357899999999999999995    55543

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=2.8e-25  Score=217.78  Aligned_cols=135  Identities=21%  Similarity=0.193  Sum_probs=106.9

Q ss_pred             eEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh---------------hHHHHHHHHHHHHHHHhcCCCCCcccc
Q 004790          333 FRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA---------------SRKKLTRAQTEREILQLLDHPFLPTLY  397 (730)
Q Consensus       333 y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~---------------~~~~~~~~~~E~~IL~~L~HPnIV~L~  397 (730)
                      +.+.++||+|+||+||+|++. +|+.||||+++.....               .......+.+|..+|..+.|++++..+
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~-~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~   80 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSE-KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVY   80 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEET-TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred             chhCCEeeeCcceEEEEEECC-CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEE
Confidence            467899999999999999985 6889999987532110               112234456788999999999999988


Q ss_pred             ccccccceeeEEeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHhcceeecccCCccEEecCCCceEEecc
Q 004790          398 THFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDF  477 (730)
Q Consensus       398 ~~f~~~~~l~LVmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~~gIVHRDLKPeNILl~~~g~vKL~DF  477 (730)
                      ++..    .+|||||+++..+..         +++..+..++.||+.+|.|||++||+||||||+|||++.+ .++|+||
T Consensus        81 ~~~~----~~lvme~~~~~~~~~---------l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~-~~~liDF  146 (191)
T d1zara2          81 AWEG----NAVLMELIDAKELYR---------VRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDF  146 (191)
T ss_dssp             EEET----TEEEEECCCCEEGGG---------CCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETT-EEEECCC
T ss_pred             EecC----CEEEEEeeccccccc---------hhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCC-CEEEEEC
Confidence            6533    379999998766543         3444567799999999999999999999999999999865 5899999


Q ss_pred             ccccc
Q 004790          478 DLSLR  482 (730)
Q Consensus       478 GlA~~  482 (730)
                      |+|..
T Consensus       147 G~a~~  151 (191)
T d1zara2         147 PQSVE  151 (191)
T ss_dssp             TTCEE
T ss_pred             CCccc
Confidence            99853

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.45  E-value=1.9e-07  Score=92.76  Aligned_cols=140  Identities=16%  Similarity=0.139  Sum_probs=92.4

Q ss_pred             cCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC-CCCCccccccccccceeeE
Q 004790          330 MSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD-HPFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       330 ~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~-HPnIV~L~~~f~~~~~l~L  408 (730)
                      ++.|++.+..+-++.+.||+...  ++..+.+|+........   ...+.+|..+|+.|. +--+++++.++.+++..|+
T Consensus        13 ~~~~~~~~~~~G~s~~~v~rv~~--~~~~~vlk~~~~~~~~~---~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~l   87 (263)
T d1j7la_          13 IEKYRCVKDTEGMSPAKVYKLVG--ENENLYLKMTDSRYKGT---TYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNL   87 (263)
T ss_dssp             HTTSEEEECSCCCSSSEEEEEEC--SSCEEEEEEECGGGTTS---TTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEE
T ss_pred             hhceEEEEcCCCCCCCcEEEEEe--CCCeEEEEEcCCCcccc---hhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEE
Confidence            36788888766666689998863  44457888876543222   223567888888773 4446888888888899999


Q ss_pred             EeeecCCCCccccccccCCCCccHHHHHHhHHHHHHHHHHhHh-------------------------------------
Q 004790          409 VMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHM-------------------------------------  451 (730)
Q Consensus       409 VmEy~~GGsL~~ll~~~~~~~lse~~a~~~~~qIl~AL~yLH~-------------------------------------  451 (730)
                      ||++++|..+.......       .....++.++...|..||+                                     
T Consensus        88 v~~~l~G~~~~~~~~~~-------~~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (263)
T d1j7la_          88 LMSEADGVLCSEEYEDE-------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE  160 (263)
T ss_dssp             EEECCSSEEHHHHTTTC-------SCHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGST
T ss_pred             EEEeccccccccccccc-------ccHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccc
Confidence            99999987774322110       0011112222222222221                                     


Q ss_pred             ----------------------cceeecccCCccEEecCCCceEEecccccc
Q 004790          452 ----------------------LGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       452 ----------------------~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                                            ..++|+|+.|.|||++.++.+-|+||+.+.
T Consensus       161 ~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         161 DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             TCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             cccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence                                  238999999999999977667799999874

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.97  E-value=1.6e-05  Score=78.04  Aligned_cols=76  Identities=18%  Similarity=0.144  Sum_probs=53.6

Q ss_pred             EEccCCc-EEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcC--CCCCccccccccccceeeEEeeecC
Q 004790          338 RLGCGDI-GSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLD--HPFLPTLYTHFETDRFSCLVMEYCP  414 (730)
Q Consensus       338 ~LG~G~f-G~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~--HPnIV~L~~~f~~~~~l~LVmEy~~  414 (730)
                      .+..|.. +.||+..... +..+.+|.......      ..+.+|...|+.|.  .-.+++++.+..+++..++||+|++
T Consensus        17 ~~~~G~s~~~v~r~~~~~-~~~~vlK~~~~~~~------~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~   89 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQG-RPVLFVKTDLSGAL------NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVP   89 (255)
T ss_dssp             ECSCTTSSCEEEEEECTT-SCCEEEEEECSCTT------SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCS
T ss_pred             EcCCcccCCeEEEEEeCC-CCEEEEEeCCccCH------hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeee
Confidence            4455553 6899998654 55688898654422      23667888888773  2346788888888889999999999


Q ss_pred             CCCccc
Q 004790          415 GGDLHT  420 (730)
Q Consensus       415 GGsL~~  420 (730)
                      |.++..
T Consensus        90 G~~~~~   95 (255)
T d1nd4a_          90 GQDLLS   95 (255)
T ss_dssp             SEETTT
T ss_pred             cccccc
Confidence            877643

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.92  E-value=9.9e-06  Score=86.17  Aligned_cols=81  Identities=16%  Similarity=0.199  Sum_probs=51.0

Q ss_pred             EeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhh-h---HHHHHHHHHHHHHHHhc-CC--CCCccccccccccceeeE
Q 004790          336 LKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLA-S---RKKLTRAQTEREILQLL-DH--PFLPTLYTHFETDRFSCL  408 (730)
Q Consensus       336 l~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~-~---~~~~~~~~~E~~IL~~L-~H--PnIV~L~~~f~~~~~l~L  408 (730)
                      .+.||.|....||++....+++.|++|.-...... .   .....+..+|.+.|+.+ .+  ..+++++.+  ++...++
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~l  108 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  108 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEE
Confidence            56799999999999998877888999964321100 0   01233456788888776 23  356677654  3445679


Q ss_pred             EeeecCCCCc
Q 004790          409 VMEYCPGGDL  418 (730)
Q Consensus       409 VmEy~~GGsL  418 (730)
                      |||++.+..+
T Consensus       109 vmE~L~~~~~  118 (392)
T d2pula1         109 VMEDLSHLKI  118 (392)
T ss_dssp             EECCCTTSEE
T ss_pred             EEeccCCccc
Confidence            9999976543

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.35  E-value=0.00038  Score=73.30  Aligned_cols=81  Identities=25%  Similarity=0.368  Sum_probs=56.3

Q ss_pred             ccCCeEEEeEEccCCcEEEEEEEECC-------CCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhc-CCCCCccccccc
Q 004790          329 GMSHFRLLKRLGCGDIGSVYLSELSS-------TRCYFAMKVMDKASLASRKKLTRAQTEREILQLL-DHPFLPTLYTHF  400 (730)
Q Consensus       329 ~~~~y~il~~LG~G~fG~Vyla~~~~-------t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L-~HPnIV~L~~~f  400 (730)
                      ..+.+++ +.|+-|-.-.+|++....       ..+.|.+++......     .....+|..+++.+ .+.-.++++++|
T Consensus        41 ~~~~l~v-~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~-----~idr~~E~~i~~~ls~~gl~Pkll~~~  114 (395)
T d1nw1a_          41 PLEHLRI-SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET-----ESHLVAESVIFTLLSERHLGPKLYGIF  114 (395)
T ss_dssp             CGGGEEE-EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC-----HHHHHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred             CccceEE-EEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcch-----hhHHHHHHHHHHHHHhCCCCCeEEEEc
Confidence            3455654 678889999999998753       235677888753221     12245788898887 465567888888


Q ss_pred             cccceeeEEeeecCCCCcc
Q 004790          401 ETDRFSCLVMEYCPGGDLH  419 (730)
Q Consensus       401 ~~~~~l~LVmEy~~GGsL~  419 (730)
                      ..    .+||||++|..|.
T Consensus       115 ~~----g~I~efi~g~~l~  129 (395)
T d1nw1a_         115 SG----GRLEEYIPSRPLS  129 (395)
T ss_dssp             TT----EEEECCCCEEECC
T ss_pred             CC----ceEEEEeccccCC
Confidence            64    5899999886553

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.89  E-value=0.0034  Score=63.14  Aligned_cols=147  Identities=17%  Similarity=0.092  Sum_probs=80.1

Q ss_pred             cccCCeEEEeEEccCCcEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCC-----CCCcccc-c--c
Q 004790          328 LGMSHFRLLKRLGCGDIGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDH-----PFLPTLY-T--H  399 (730)
Q Consensus       328 l~~~~y~il~~LG~G~fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~H-----PnIV~L~-~--~  399 (730)
                      .+++...-++.|..|---+.|+.+... + .|++|+..+..     ....+..|.++|..|..     |..+... +  +
T Consensus        15 Y~lg~~~~~~~i~~G~~N~ny~v~t~~-g-~yVLri~~~~~-----~~~~l~~~~~~l~~L~~~g~pvp~pi~~~~g~~~   87 (316)
T d2ppqa1          15 YDVGSLTSYKGIAEGVENSNFLLHTTK-D-PLILTLYEKRV-----EKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELL   87 (316)
T ss_dssp             BCCCCEEEEEEECC---EEEEEEEESS-C-CEEEEEECC--------CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSC
T ss_pred             CCCCCceEeecCCCCcccCeEEEEECC-C-cEEEEEcCCCC-----CHHHHHHHHHHHHhhhhccccccccceecCCCcc
Confidence            345566667778888889999998764 3 48999986531     12334556777776632     2222211 1  1


Q ss_pred             ccccceeeEEeeecCCCCccccccc------------------c----CCCC-----------------ccHHHHHHhHH
Q 004790          400 FETDRFSCLVMEYCPGGDLHTLRQR------------------Q----PGKH-----------------FSEYAARFYAA  440 (730)
Q Consensus       400 f~~~~~l~LVmEy~~GGsL~~ll~~------------------~----~~~~-----------------lse~~a~~~~~  440 (730)
                      .......+.++.++.|.........                  .    ....                 .........+.
T Consensus        88 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  167 (316)
T d2ppqa1          88 GELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIR  167 (316)
T ss_dssp             EEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHH
T ss_pred             eeeecccceeeeecccccccccchhHHHHHHHHHHhhhhhhhhcccccccccchhhcchhhhHHHHhhhhcchhHHHHHH
Confidence            1223455667777766544221000                  0    0000                 00011112222


Q ss_pred             HHHHHHHHhH----hcceeecccCCccEEecCCCceEEecccccc
Q 004790          441 EVLLALEYLH----MLGVVYRDLKPENVLVRDDGHIMLSDFDLSL  481 (730)
Q Consensus       441 qIl~AL~yLH----~~gIVHRDLKPeNILl~~~g~vKL~DFGlA~  481 (730)
                      .+...+.-.+    ..|+||+|+.++|||++.+...-|+||+.+.
T Consensus       168 ~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         168 PEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             HHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHHhhhccCccccccccccCCcchhhhhcccccceeEecccccc
Confidence            3333333333    2679999999999999988778999999874

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0016  Score=66.47  Aligned_cols=70  Identities=16%  Similarity=0.142  Sum_probs=44.1

Q ss_pred             cEEEEEEEECCCCeEEEEEEeehhhhhhHHHHHHHHHHHHHHHhcCCCCC-----cccc--ccccccceeeEEeeecCCC
Q 004790          344 IGSVYLSELSSTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFL-----PTLY--THFETDRFSCLVMEYCPGG  416 (730)
Q Consensus       344 fG~Vyla~~~~t~~~vAvKvi~k~~~~~~~~~~~~~~E~~IL~~L~HPnI-----V~L~--~~f~~~~~l~LVmEy~~GG  416 (730)
                      --.||+++.. +|..|++|+.+.... +   .+.+..|...|..|..-.|     +..-  ..++.+...+.|+++++|.
T Consensus        35 EN~vy~v~~~-dg~~~VlK~~rp~~~-s---~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~  109 (325)
T d1zyla1          35 ENRVYQFQDE-DRRRFVVKFYRPERW-T---ADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGR  109 (325)
T ss_dssp             SSEEEEECCT-TCCCEEEEEECTTTS-C---HHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCE
T ss_pred             cceeEEEEcC-CCCEEEEEEeCCCCC-C---HHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCc
Confidence            4689999874 466799999865432 2   2335678888877732222     1111  2334567788999999875


Q ss_pred             Cc
Q 004790          417 DL  418 (730)
Q Consensus       417 sL  418 (730)
                      .+
T Consensus       110 ~~  111 (325)
T d1zyla1         110 QF  111 (325)
T ss_dssp             EC
T ss_pred             CC
Confidence            44

>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase c-gamma
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=94.57  E-value=0.0062  Score=47.82  Aligned_cols=33  Identities=15%  Similarity=0.144  Sum_probs=30.1

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCCCCCCcc
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHSSIDSTG  231 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~~i~s~~  231 (730)
                      +.+||++|.+|++.+|+.|...+...|+++++.
T Consensus        32 ~~~~g~~C~~C~~~~H~~C~~~v~~~C~~~~~~   64 (66)
T d1tbna_          32 LVHQGMKCSCCEMNVHRRCVRSVPSLCGVDHTE   64 (66)
T ss_dssp             TSSSCEEETTTCCEECTTTTTTSCCCSSCCCCC
T ss_pred             cccCccccCcccCeEChHHhccccccCCCCccc
Confidence            468999999999999999999999999988764

>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Beta-chimaerin, middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.25  E-value=0.019  Score=44.32  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=28.2

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCCCCCCc
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHSSIDST  230 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~~i~s~  230 (730)
                      +.+||++|.+|++.+|++|..++...|+.+..
T Consensus        28 ~~~~g~~C~~C~~~~H~~C~~~v~~~C~~~~~   59 (62)
T d1xa6a3          28 LIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLK   59 (62)
T ss_dssp             TTTCEECCSSSCCCBCTGGGTTSCSCCCTTTT
T ss_pred             cccCeEEcCCCCchhhHHHHhhCCCcCCCChh
Confidence            35899999999999999999999999986543

>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Kinase suppressor of Ras, Ksr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.25  E-value=0.024  Score=41.85  Aligned_cols=28  Identities=11%  Similarity=0.088  Sum_probs=23.7

Q ss_pred             CCCCCCCcccceeEeeccCCCCCCCCCCC
Q 004790          197 NSLLPPDSEEKECVWDASLPPSGNVSPHS  225 (730)
Q Consensus       197 ~~~~~~~~~~~~c~~~~~~~~~~~~sp~~  225 (730)
                      +.+|.||++|++|++.+|++|...+ |.|
T Consensus        21 ~~~l~qg~~C~~C~~~~Hk~C~~~~-P~C   48 (49)
T d1kbea_          21 QKSMIFGVKCKHCRLKCHNKCTKEA-PAC   48 (49)
T ss_dssp             CCSSCCEEEETTTTEEESSSCTTTS-CCC
T ss_pred             chhhhCcCCcCCCCChHhHhhcccC-CCC
Confidence            3567899999999999999998876 444

>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: RAF-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.036  Score=41.21  Aligned_cols=28  Identities=14%  Similarity=0.071  Sum_probs=24.3

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCCC
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHSS  226 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~~  226 (730)
                      ++.||++|++|++.+|++|...+...|-
T Consensus        23 ~i~~g~~C~~C~~~~H~~C~~~v~~~C~   50 (52)
T d1faqa_          23 FLLNGFRCQTCGYKFHEHCSTKVPTMCV   50 (52)
T ss_dssp             EECSEEECTTTTCCBCSTTSSSSSSCCC
T ss_pred             ccccCCCcCCCCChhhhhhhcccccccc
Confidence            4569999999999999999999976663

>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase C-delta (PKCdelta)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.69  E-value=0.022  Score=42.01  Aligned_cols=27  Identities=11%  Similarity=0.130  Sum_probs=23.5

Q ss_pred             CCCCCcccceeEeeccCCCCCCCCCCC
Q 004790          199 LLPPDSEEKECVWDASLPPSGNVSPHS  225 (730)
Q Consensus       199 ~~~~~~~~~~c~~~~~~~~~~~~sp~~  225 (730)
                      +.+||++|.+|++.+|++|...++..|
T Consensus        24 ~~~qg~~C~~C~~~~H~~C~~~v~~~C   50 (50)
T d1ptqa_          24 LVKQGLKCEDCGMNVHHKCREKVANLC   50 (50)
T ss_dssp             SSSCEEEETTTCCEECHHHHTTSCSCC
T ss_pred             cccCcEECCCCCCeeChhHcccccCCC
Confidence            468999999999999999998886554